Citrus Sinensis ID: 044888

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQEDIVSTCGHPYIANINGNCNSDMSPW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccEEEEcccccHEEcccccEEEEHccccccccccccEEEEEEEcccccccHHHHHcccccccHHHHHHEHHHHHcccccccccccHHHHHHHHHHHHcccHHHHccHHHcccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MWRLKICIGAARGLHylrtgtrniiihrdvkstnilldenwvakvsdlglakvgpnmltlccyqsgtlglvvdpflrgkidpgcfkTFTDIAKKCladrgcdrpqmgDVLCNLGLAWRQQGAVDHYIQEDivstcghpyianingncnsdmspw
Flexible Loop (DISEMBL)
mwrlkicigaarglhylrtgtrniiihrdVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQEDIVSTCGHPYIANIngncnsdmspw
Low Complexity Region (SEG)
MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQEDIVSTCGHPYIANINGNCNSDMSPW
Disordered region (IsUnstruct)
*WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQEDIVSTCGHPYIANINGNC*******
Disordered Region (DISOPRED)
MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGA****I****V*TCGHPYIANINGNCNSDM*P*
Disordered Region (DISEMBL)
MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQEDIVSTCGHPYIANINGNCNSDMSPW
Disordered Region (DISPRO)
*WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQEDIVSTCGHPYIANINGNCNSDMSPW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQEDIVSTCGHPYIANINGNCNSDMSPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q9LK35	855	Receptor-like protein kin	yes	no	0.896	0.161	0.38	2e-27
Q9LX66	830	Receptor-like protein kin	no	no	0.785	0.145	0.377	1e-23
Q9FID8	873	Putative receptor-like pr	no	no	0.740	0.130	0.350	4e-22
Q9FN92	829	Probable receptor-like pr	no	no	0.870	0.161	0.367	8e-22
Q9FID9	880	Probable receptor-like pr	no	no	0.740	0.129	0.355	5e-21
Q3E8W4	858	Receptor-like protein kin	no	no	0.357	0.064	0.8	2e-20
Q9SR05	850	Receptor-like protein kin	no	no	0.357	0.064	0.781	4e-20
Q9SCZ4	895	Receptor-like protein kin	no	no	0.357	0.061	0.763	4e-20
O80623	815	Probable receptor-like pr	no	no	0.720	0.136	0.375	8e-20
Q9FLW0	824	Probable receptor-like pr	no	no	0.915	0.171	0.375	7e-19

>sp|Q9LK35|THE1_ARATH Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 93/200 (46%), Gaps = 62/200 (31%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN------ 56
           RL+ICIGAARGLHYL TG    IIHRDVK+TNILLDEN VAKV+D GL+K GP+      
Sbjct: 608 RLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQTHV 667

Query: 57  ----------------------------------MLTLCC-------------------- 62
                                             M  LCC                    
Sbjct: 668 STAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCCRPALNPVLPREQVNIAEWAM 727

Query: 63  --YQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
              + G L  ++D  L GK++P   K F + A+KCLA+ G DRP MGDVL NL  A + +
Sbjct: 728 AWQKKGLLDQIMDSNLTGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLE 787

Query: 121 GAVDHYIQEDIVSTCGHPYI 140
                 ++ D  ST   P I
Sbjct: 788 ETSSALMEPDDNSTNHIPGI 807

Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner. Mediates the response of growing plant cells to the perturbation of cellulose synthesis and may act as a cell-wall-integrity sensor. Controls ectopic-lignin accumulation in cellulose-deficient mutant backgrounds.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9LX66|HERK_ARATH Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 86/183 (46%), Gaps = 62/183 (33%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
           RL+ICIGAARGLHYL TG    +IHRDVKS NILLDEN++AKV+D GL+K GP +    +
Sbjct: 583 RLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHV 642

Query: 61  CCYQSGTLGL--------------------------------VVDPFL------------ 76
                G+ G                                 V+DP L            
Sbjct: 643 STAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAM 702

Query: 77  ----RGKID------------PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
               +G++D            P   + F +  +KCLAD G DRP MGDVL NL  A + Q
Sbjct: 703 KWQKKGQLDQIIDQSLRGNIRPDSLRKFAETGEKCLADYGVDRPSMGDVLWNLEYALQLQ 762

Query: 121 GAV 123
            AV
Sbjct: 763 EAV 765

Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FID8|Y5900_ARATH Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1

 Score =  103 bits (257), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 80/177 (45%), Gaps = 63/177 (35%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN------ 56
           RL+ICIGAARGL YL TG +  IIHRD+K+TNILLDEN+V KVSD GL++VGP       
Sbjct: 620 RLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGLSRVGPTSASQTH 679

Query: 57  -----------------------------------MLTLCC------------------- 62
                                              +  LCC                   
Sbjct: 680 VSTVVKGTFGYLDPEYYRRQVLTEKSDVYSFGVVLLEVLCCRPIRMQSVPPEQADLIRWV 739

Query: 63  ---YQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA 116
              Y+ GT+  ++D  L   I     + F +IA +C+ DRG +RP M DV+  L  A
Sbjct: 740 KSNYRRGTVDQIIDSDLSADITSTSLEKFCEIAVRCVQDRGMERPPMNDVVWALEFA 796

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FN92|Y5597_ARATH Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=1 SV=1

 Score =  102 bits (254), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 89/196 (45%), Gaps = 62/196 (31%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
           RL+ICIG+ARGLHYL TG    +IHRDVKS NILLDEN +AKV+D GL+K GP +    +
Sbjct: 580 RLEICIGSARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHV 639

Query: 61  CCYQSGTLGL--------------------------------VVDPFL------------ 76
                G+ G                                 V+DP L            
Sbjct: 640 STAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVMFEVLCARPVIDPTLTREMVNLAEWAM 699

Query: 77  ----RGK----IDPG--------CFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
               +G+    IDP           + F +  +KCLAD G DRP MGDVL NL  A + Q
Sbjct: 700 KWQKKGQLEHIIDPSLRGKIRPDSLRKFGETGEKCLADYGVDRPSMGDVLWNLEYALQLQ 759

Query: 121 GAVDHYIQEDIVSTCG 136
            AV     ED  +  G
Sbjct: 760 EAVVDGDPEDSTNMIG 775

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FID9|Y5389_ARATH Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 81/177 (45%), Gaps = 63/177 (35%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP------- 55
           RL+ICIGAARGL YL TG +  IIHRD+K+TNILLDEN+VAKVSD GL++VGP       
Sbjct: 627 RLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSRVGPTSASQTH 686

Query: 56  -------------------NMLT---------------LCC------------------- 62
                               +LT               LCC                   
Sbjct: 687 VSTVVKGTFGYLDPEYYRRQILTEKSDVYSFGVVLLEVLCCRPIRMQSVPPEQADLIRWV 746

Query: 63  ---YQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA 116
              +   T+  ++D  L   I     + F +IA +C+ DRG +RP M DV+  L  A
Sbjct: 747 KSNFNKRTVDQIIDSDLTADITSTSMEKFCEIAIRCVQDRGMERPPMNDVVWALEFA 803

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q3E8W4|ANX2_ARATH Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/55 (80%), Positives = 48/55 (87%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM 57
           RL+I IGAARGLHYL TG +  IIHRDVK+TNILLDENWVAKVSD GL+K GPNM
Sbjct: 619 RLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNM 673

Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SR05|ANX1_ARATH Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/55 (78%), Positives = 48/55 (87%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM 57
           RL+I IGAARGLHYL TG +  IIHRDVK+TNIL+DENWVAKVSD GL+K GPNM
Sbjct: 615 RLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILVDENWVAKVSDFGLSKTGPNM 669

Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SCZ4|FERON_ARATH Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/55 (76%), Positives = 48/55 (87%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM 57
           RL+ICIGAARGLHYL TG ++ IIHRDVK+TNILLDE WVAKVSD GL+K GP +
Sbjct: 635 RLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTL 689

Receptor-like protein kinase that mediates the female control of male gamete delivery during fertilization, including growth cessation of compatible pollen tubes ensuring a reproductive isolation barriers. Required for cell elongation during vegetative growth, mostly in a brassinosteroids- (BR-) independent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O80623|Y2393_ARATH Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 85/173 (49%), Gaps = 62/173 (35%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM----- 57
           RL+IC+GAARGLHYL TG+   IIHRDVKS NILLD+N++AKV+D GL+K GP++     
Sbjct: 586 RLEICVGAARGLHYLHTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSKTGPDLDQTHV 645

Query: 58  ---------------LTLC-------CYQSGTLGL-------VVDPFL------------ 76
                          LT          Y  G + L       V+DP L            
Sbjct: 646 STAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREKVNLIEWAM 705

Query: 77  ----RGK----IDPGC--------FKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
               +GK    IDP           K + ++ +KCL+  G +RP MGD+L NL
Sbjct: 706 KLVKKGKLEDIIDPFLVGKVKLEEVKKYCEVTEKCLSQNGIERPAMGDLLWNL 758

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FLW0|Y5241_ARATH Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 87/165 (52%), Gaps = 24/165 (14%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC 62
           RL++CIGAARGLHYL TG+   IIHRD+KSTNILLD N+VAKV+D GL++ GP     C 
Sbjct: 587 RLEVCIGAARGLHYLHTGSSQGIIHRDIKSTNILLDNNYVAKVADFGLSRSGP-----CI 641

Query: 63  YQSGTLGLVVDPFLRGKIDPGCFK--TFTDIAK-----KCLADRGCDRPQMGDVL----C 111
            ++     V   F  G +DP  F+    TD +        L +  C RP +  +L     
Sbjct: 642 DETHVSTGVKGSF--GYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLVREQV 699

Query: 112 NL---GLAWRQQGAVDHYIQEDI---VSTCGHPYIANINGNCNSD 150
           NL    + W+++G +D  +  +I   +  C     A     C +D
Sbjct: 700 NLAEWAIEWQRKGMLDQIVDPNIADEIKPCSLKKFAETAEKCCAD 744

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
125527857	859	hypothetical protein OsI_03893 [Oryza sa	0.792	0.142	0.517	1e-34
15239630	855	receptor-like protein kinase THESEUS 1 [	0.896	0.161	0.38	1e-25
297796311	852	hypothetical protein ARALYDRAFT_495518 [	0.896	0.161	0.375	2e-25
356502651	842	PREDICTED: receptor-like protein kinase	0.766	0.140	0.395	1e-24
357443861	814	Pto disease resistance protein [Medicago	0.766	0.144	0.436	1e-24
225735180	303	protein kinase-coding resistance protein	0.720	0.366	0.406	2e-22
225735184	303	protein kinase-coding resistance protein	0.720	0.366	0.406	3e-22
225735178	302	protein kinase-coding resistance protein	0.701	0.357	0.407	4e-22
449441067	880	PREDICTED: probable receptor-like protei	0.785	0.137	0.398	6e-22
15231393	830	receptor-like protein kinase HERK 1 [Ara	0.785	0.145	0.377	8e-22

>gi|125527857|gb|EAY75971.1| hypothetical protein OsI_03893 [Oryza sativa Indica Group]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/147 (51%), Positives = 92/147 (62%), Gaps = 25/147 (17%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM----- 57
           RL+ICIGAARGLHYL TG ++ IIHRDVK+TNILLDE WVAKVSD GL+K GP+M     
Sbjct: 642 RLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHV 701

Query: 58  --------------------LTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLA 97
                                 L C + G L  +VDP L+GKI P CFK F + A+KC++
Sbjct: 702 LCARPALNPTLAKEEVSLAEWALHCQKKGILDQIVDPHLKGKIAPQCFKKFAETAEKCVS 761

Query: 98  DRGCDRPQMGDVLCNLGLAWRQQGAVD 124
           D G DRP MGDVL NL  A + Q + +
Sbjct: 762 DEGIDRPSMGDVLWNLEFALQMQESAE 788

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239630|ref|NP_200249.1| receptor-like protein kinase THESEUS 1 [Arabidopsis thaliana] gi|75335100|sp|Q9LK35.1|THE1_ARATH RecName: Full=Receptor-like protein kinase THESEUS 1; Flags: Precursor gi|8953753|dbj|BAA98098.1| receptor-protein kinase-like protein [Arabidopsis thaliana] gi|332009107|gb|AED96490.1| receptor-like protein kinase THESEUS 1 [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 93/200 (46%), Gaps = 62/200 (31%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN------ 56
           RL+ICIGAARGLHYL TG    IIHRDVK+TNILLDEN VAKV+D GL+K GP+      
Sbjct: 608 RLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQTHV 667

Query: 57  ----------------------------------MLTLCC-------------------- 62
                                             M  LCC                    
Sbjct: 668 STAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCCRPALNPVLPREQVNIAEWAM 727

Query: 63  --YQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
              + G L  ++D  L GK++P   K F + A+KCLA+ G DRP MGDVL NL  A + +
Sbjct: 728 AWQKKGLLDQIMDSNLTGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLE 787

Query: 121 GAVDHYIQEDIVSTCGHPYI 140
                 ++ D  ST   P I
Sbjct: 788 ETSSALMEPDDNSTNHIPGI 807

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796311|ref|XP_002866040.1| hypothetical protein ARALYDRAFT_495518 [Arabidopsis lyrata subsp. lyrata] gi|297311875|gb|EFH42299.1| hypothetical protein ARALYDRAFT_495518 [Arabidopsis lyrata subsp. lyrata]

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/200 (37%), Positives = 93/200 (46%), Gaps = 62/200 (31%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN------ 56
           RL++CIGAARGLHYL TG    IIHRDVK+TNILLDEN VAKV+D GL+K GP+      
Sbjct: 606 RLEVCIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQTHV 665

Query: 57  ----------------------------------MLTLCC-------------------- 62
                                             M  LCC                    
Sbjct: 666 STAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCCRPALNPVLPREQVNIAEWAM 725

Query: 63  --YQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
              + G L  ++D  L GK++P   K F + A+KCLA+ G DRP MGDVL NL  A + +
Sbjct: 726 VWQKKGLLDQIMDSNLTGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLE 785

Query: 121 GAVDHYIQEDIVSTCGHPYI 140
                 ++ D  ST   P I
Sbjct: 786 ETSSALMEPDDNSTNHIPGI 805

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502651|ref|XP_003520131.1| PREDICTED: receptor-like protein kinase FERONIA-like [Glycine max]

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 88/177 (49%), Gaps = 59/177 (33%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG-PNMLTLC 61
           RL+ICIG ARGLHYL TGT++ IIHRD+K+TNILLD NWV K+SD GL+K G P++L   
Sbjct: 626 RLEICIGVARGLHYLHTGTKHRIIHRDIKTTNILLDHNWVPKISDFGLSKAGYPSILITN 685

Query: 62  -----------CYQS--------------------------------------------- 65
                      C+QS                                             
Sbjct: 686 VKGSIGYLDPECFQSHKLTEKSDLYSLGVVLLEILSTRPAVIVGEDDEHVNLAEWAMLCF 745

Query: 66  --GTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
             G L  +VDP L+G I   CF+ +   A KCLA+RG +RP +G+VL NL LA   Q
Sbjct: 746 ENGNLEQIVDPNLKGNIVEECFELYLGFAMKCLAERGVERPSIGEVLQNLVLAMHLQ 802

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443861|ref|XP_003592208.1| Pto disease resistance protein [Medicago truncatula] gi|355481256|gb|AES62459.1| Pto disease resistance protein [Medicago truncatula]

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 85/165 (51%), Gaps = 47/165 (28%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP------- 55
           RL+ICIG+ARGLHYL TG    IIHRD+KSTNIL+DE+ VAKV+D GL++ GP       
Sbjct: 599 RLEICIGSARGLHYLHTGFAQGIIHRDIKSTNILIDEDNVAKVADFGLSRSGPSLDETHV 658

Query: 56  ---NMLT---------------LC----------------------CYQSGTLGLVVDPF 75
              N LT               LC                        Q G L  +VDP 
Sbjct: 659 STGNQLTDKSDVYSFGVVLFEVLCGRPAVDPQLTREQVNLAEWAIEWLQKGMLDHIVDPH 718

Query: 76  LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
           L G I P   K F + A+KCLA+ G DRP MGDVL NL  A + Q
Sbjct: 719 LVGDIKPRSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEYALQLQ 763

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225735180|gb|ACO25567.1| protein kinase-coding resistance protein [Nicotiana repanda] gi|225735186|gb|ACO25570.1| protein kinase-coding resistance protein [Nicotiana repanda]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 83/165 (50%), Gaps = 54/165 (32%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG-------- 54
           RL+ICIGAARGLHYL TG  N  IHRDVKS NILLDEN+VAKV+D GL+K+G        
Sbjct: 139 RLEICIGAARGLHYLHTGYVNAAIHRDVKSANILLDENFVAKVTDFGLSKIGLELDQTHI 198

Query: 55  -------------------------------------------PNMLTLCCY---QSGTL 68
                                                      P +++L  +   + G L
Sbjct: 199 STTTRVVGTFGYIDPEYYRNGRLSEKSDVYSFGVVLLEVLCARPTVVSLTEWAIKKKGQL 258

Query: 69  GLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
             ++DP L GKI P   + F +IA+KC+A  G DRP MGDVL  L
Sbjct: 259 EQIIDPNLVGKIRPDSLRKFGEIAEKCIAIYGEDRPSMGDVLWKL 303

Source: Nicotiana repanda

Species: Nicotiana repanda

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225735184|gb|ACO25569.1| protein kinase-coding resistance protein [Nicotiana repanda]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 83/165 (50%), Gaps = 54/165 (32%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG-------- 54
           RL+ICIGAARGLHYL TG  N  IHRDVKS NILLDEN+VAKV+D GL+K+G        
Sbjct: 139 RLEICIGAARGLHYLHTGYVNAAIHRDVKSANILLDENFVAKVTDFGLSKIGLELDQTHI 198

Query: 55  -------------------------------------------PNMLTLCCY---QSGTL 68
                                                      P +++L  +   + G L
Sbjct: 199 STTTRVVGTFGYIDPEYYRNGRLSEKSDVYSFGVVLLEVLCARPTVVSLTEWGNKKKGQL 258

Query: 69  GLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
             ++DP L GKI P   + F +IA+KC+A  G DRP MGDVL  L
Sbjct: 259 EQIIDPNLVGKIRPDSLRKFGEIAEKCIAIYGEDRPSMGDVLWKL 303

Source: Nicotiana repanda

Species: Nicotiana repanda

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225735178|gb|ACO25566.1| protein kinase-coding resistance protein [Nicotiana repanda]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 82/162 (50%), Gaps = 54/162 (33%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG-------- 54
           RL+ICIGAARGLHYL TG  N  IHRDVKS NILLDEN+VAKV+D GL+K+G        
Sbjct: 139 RLEICIGAARGLHYLHTGYVNAAIHRDVKSANILLDENFVAKVTDFGLSKIGLELDQTHI 198

Query: 55  -------------------------------------------PNMLTLCCY---QSGTL 68
                                                      P +++L  +   + G L
Sbjct: 199 STTTRVVGTFGYIDPEYYRNGRLSEKSDVYSFGVVLLEVLCARPTVVSLTEWGNKKKGQL 258

Query: 69  GLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
             ++DP L GKI P   + F +IA+KC+A  G DRP MGDVL
Sbjct: 259 EQIIDPNLVGKIRPDSLRKFGEIAEKCIAIYGEDRPSMGDVL 300

Source: Nicotiana repanda

Species: Nicotiana repanda

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441067|ref|XP_004138305.1| PREDICTED: probable receptor-like protein kinase At5g61350-like [Cucumis sativus] gi|449477567|ref|XP_004155059.1| PREDICTED: probable receptor-like protein kinase At5g61350-like [Cucumis sativus]

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 73/183 (39%), Positives = 89/183 (48%), Gaps = 62/183 (33%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
           RL+ICIGAARGLHYL TG    IIHRDVK+TNILLDEN+VAKV+D GL+K  P++    +
Sbjct: 641 RLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAAPSLEQTHV 700

Query: 61  CCYQSGTLGL--------------------------------VVDPFL------------ 76
                G+ G                                 V++P L            
Sbjct: 701 STAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARQVINPTLPREQVNLAEWAM 760

Query: 77  ----RGK----IDP--------GCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
               +GK    IDP        G  K F + A+KCLA+ G DRP MGDVL NL  A + Q
Sbjct: 761 QNYRKGKLEKIIDPKISSSIVEGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQ 820

Query: 121 GAV 123
            AV
Sbjct: 821 EAV 823

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231393|ref|NP_190214.1| receptor-like protein kinase HERK 1 [Arabidopsis thaliana] gi|75335601|sp|Q9LX66.1|HERK_ARATH RecName: Full=Receptor-like protein kinase HERK 1; AltName: Full=Protein HERCULES RECEPTOR KINASE 1; Flags: Precursor gi|7799017|emb|CAB90956.1| receptor protein kinase-like [Arabidopsis thaliana] gi|332644622|gb|AEE78143.1| receptor-like protein kinase HERK 1 [Arabidopsis thaliana]

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 86/183 (46%), Gaps = 62/183 (33%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
           RL+ICIGAARGLHYL TG    +IHRDVKS NILLDEN++AKV+D GL+K GP +    +
Sbjct: 583 RLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHV 642

Query: 61  CCYQSGTLGL--------------------------------VVDPFL------------ 76
                G+ G                                 V+DP L            
Sbjct: 643 STAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAM 702

Query: 77  ----RGKID------------PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ 120
               +G++D            P   + F +  +KCLAD G DRP MGDVL NL  A + Q
Sbjct: 703 KWQKKGQLDQIIDQSLRGNIRPDSLRKFAETGEKCLADYGVDRPSMGDVLWNLEYALQLQ 762

Query: 121 GAV 123
            AV
Sbjct: 763 EAV 765

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:2148830	858	ANX2 "ANXUR2" [Arabidopsis tha	0.357	0.064	0.8	4e-18
TAIR|locus:2075346	830	HERK1 "hercules receptor kinas	0.831	0.154	0.408	6.2e-18
TAIR|locus:2151349	855	THE1 "THESEUS1" [Arabidopsis t	0.805	0.145	0.418	6.5e-18
TAIR|locus:2084953	850	ANX1 "ANXUR1" [Arabidopsis tha	0.357	0.064	0.781	8.3e-18
TAIR|locus:2081895	895	FER "FERONIA" [Arabidopsis tha	0.357	0.061	0.763	8.9e-18
TAIR|locus:2050080	871	AT2G21480 [Arabidopsis thalian	0.824	0.145	0.438	1.1e-17
TAIR|locus:2178707	824	AT5G24010 [Arabidopsis thalian	0.954	0.178	0.371	3.5e-17
TAIR|locus:2136338	878	AT4G39110 [Arabidopsis thalian	0.837	0.146	0.418	4.9e-17
TAIR|locus:2204564	849	HERK2 "hercules receptor kinas	0.831	0.150	0.401	5.9e-17
TAIR|locus:2174249	829	AT5G59700 [Arabidopsis thalian	0.831	0.154	0.394	7.3e-17

TAIR|locus:2148830 ANX2 "ANXUR2" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 4.0e-18, P = 4.0e-18
 Identities = 44/55 (80%), Positives = 48/55 (87%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM 57
             RL+I IGAARGLHYL TG +  IIHRDVK+TNILLDENWVAKVSD GL+K GPNM
Sbjct:   619 RLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNM 673

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009860 "pollen tube growth" evidence=IGI

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2075346 HERK1 "hercules receptor kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 6.2e-18, P = 6.2e-18
 Identities = 56/137 (40%), Positives = 80/137 (58%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
             RL+ICIGAARGLHYL TG    +IHRDVKS NILLDEN++AKV+D GL+K GP +    +
Sbjct:   583 RLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHV 642

Query:    61 CCYQSGTLGLVVDP--FLRGKI-DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG--- 114
                  G+ G + DP  F R ++ D     +F  +  + L  R    P +   + NL    
Sbjct:   643 STAVKGSFGYL-DPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWA 701

Query:   115 LAWRQQGAVDHYIQEDI 131
             + W+++G +D  I + +
Sbjct:   702 MKWQKKGQLDQIIDQSL 718

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009791 "post-embryonic development" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=IGI;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2151349 THE1 "THESEUS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 6.5e-18, P = 6.5e-18
 Identities = 59/141 (41%), Positives = 84/141 (59%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
             RL+ICIGAARGLHYL TG    IIHRDVK+TNILLDEN VAKV+D GL+K GP++    +
Sbjct:   608 RLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQTHV 667

Query:    61 CCYQSGTLGLVVDP--FLRGKI-DPGCFKTFTDIAKKCLADRGCDRPQMGDVL----CNL 113
                  G+ G + DP  F R ++ +     +F  +  + L    C RP +  VL     N+
Sbjct:   668 STAVKGSFGYL-DPEYFRRQQLTEKSDVYSFGVVLMEVL----CCRPALNPVLPREQVNI 722

Query:   114 G---LAWRQQGAVDHYIQEDI 131
                 +AW+++G +D  +  ++
Sbjct:   723 AEWAMAWQKKGLLDQIMDSNL 743

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009791 "post-embryonic development" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=IGI;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2084953 ANX1 "ANXUR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 8.3e-18, P = 8.3e-18
 Identities = 43/55 (78%), Positives = 48/55 (87%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM 57
             RL+I IGAARGLHYL TG +  IIHRDVK+TNIL+DENWVAKVSD GL+K GPNM
Sbjct:   615 RLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILVDENWVAKVSDFGLSKTGPNM 669

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2081895 FER "FERONIA" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 42/55 (76%), Positives = 48/55 (87%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM 57
             RL+ICIGAARGLHYL TG ++ IIHRDVK+TNILLDE WVAKVSD GL+K GP +
Sbjct:   635 RLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTL 689

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0010483 "pollen tube reception" evidence=IMP

GO:0043680 "filiform apparatus" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010193 "response to ozone" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2050080 AT2G21480 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 61/139 (43%), Positives = 80/139 (57%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK---VGPNMLT 59
             RL+ICIGAARGLHYL TGT   IIHRDVKSTNILLDE  VAKV+D GL+K    G N ++
Sbjct:   623 RLEICIGAARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVS 682

Query:    60 LCCYQSGTLGLVVDP--FLRGKI-DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG-- 114
                   G+ G + DP  F R ++ D     +F  +  + L  R    PQ+     NL   
Sbjct:   683 TAV--KGSFGYL-DPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQVNLAEW 739

Query:   115 -LAWRQQGAVDHYIQEDIV 132
              + W+Q+G ++  I   +V
Sbjct:   740 AMLWKQKGLLEKIIDPHLV 758

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2178707 AT5G24010 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 59/159 (37%), Positives = 86/159 (54%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP--NMLTL 60
             RL++CIGAARGLHYL TG+   IIHRD+KSTNILLD N+VAKV+D GL++ GP  +   +
Sbjct:   587 RLEVCIGAARGLHYLHTGSSQGIIHRDIKSTNILLDNNYVAKVADFGLSRSGPCIDETHV 646

Query:    61 CCYQSGTLGLVVDP--FLRGKI-DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG--- 114
                  G+ G + DP  F R ++ D     +F  +  + L  R    P +     NL    
Sbjct:   647 STGVKGSFGYL-DPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLVREQVNLAEWA 705

Query:   115 LAWRQQGAVDHYIQEDI---VSTCGHPYIANINGNCNSD 150
             + W+++G +D  +  +I   +  C     A     C +D
Sbjct:   706 IEWQRKGMLDQIVDPNIADEIKPCSLKKFAETAEKCCAD 744

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2136338 AT4G39110 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 4.9e-17, P = 4.9e-17
 Identities = 59/141 (41%), Positives = 80/141 (56%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK---VGPNMLT 59
             RL+ICIG+ARGLHYL TGT   IIHRDVKSTNILLDE  VAKV+D GL+K    G N ++
Sbjct:   624 RLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVS 683

Query:    60 LCCYQSGTLGLVVDP--FLRGKI-DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG-- 114
                   G+ G + DP  F R ++ D     +F  +  + L  R    PQ+     NL   
Sbjct:   684 TAV--KGSFGYL-DPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQVNLAEW 740

Query:   115 -LAWRQQGAVDHYIQEDIVST 134
              + W+++G ++  I   +  T
Sbjct:   741 AMQWKRKGLLEKIIDPHLAGT 761

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2204564 HERK2 "hercules receptor kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 5.9e-17, P = 5.9e-17
 Identities = 55/137 (40%), Positives = 81/137 (59%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
             RL+ CIG+ARGLHYL TG+   IIHRDVK+TNILLDEN+VAK+SD GL+K GP+M    +
Sbjct:   618 RLEACIGSARGLHYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGLSKAGPSMDHTHV 677

Query:    61 CCYQSGTLGLVVDP--FLRGKI-DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG--- 114
                  G+ G + DP  F R ++ +     +F  +  + +  R    P +     NL    
Sbjct:   678 STAVKGSFGYL-DPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWA 736

Query:   115 LAWRQQGAVDHYIQEDI 131
             L+W++Q  ++  I  ++
Sbjct:   737 LSWQKQRNLESIIDSNL 753

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2174249 AT5G59700 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 7.3e-17, P = 7.3e-17
 Identities = 54/137 (39%), Positives = 79/137 (57%)

Query:     3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
             RL+ICIG+ARGLHYL TG    +IHRDVKS NILLDEN +AKV+D GL+K GP +    +
Sbjct:   580 RLEICIGSARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHV 639

Query:    61 CCYQSGTLGLVVDP--FLRGKI-DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG--- 114
                  G+ G + DP  F R ++ +     +F  +  + L  R    P +   + NL    
Sbjct:   640 STAVKGSFGYL-DPEYFRRQQLTEKSDVYSFGVVMFEVLCARPVIDPTLTREMVNLAEWA 698

Query:   115 LAWRQQGAVDHYIQEDI 131
             + W+++G ++H I   +
Sbjct:   699 MKWQKKGQLEHIIDPSL 715

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-12
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	8e-11
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-10
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-10
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	6e-10
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	6e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-08
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-08
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-08
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	3e-08
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-08
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	4e-08
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	6e-08
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	7e-08
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	9e-08
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-07
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-07
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	3e-07
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	6e-07
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	7e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	7e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	9e-07
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-06
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	1e-06
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	1e-06
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-06
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-06
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	3e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	3e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	4e-06
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	4e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	4e-06
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-06
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	5e-06
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	5e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	5e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	6e-06
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	7e-06
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	7e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	7e-06
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	9e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	9e-06
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-05
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	2e-05
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-05
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-05
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	3e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	4e-05
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	4e-05
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	4e-05
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	4e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	5e-05
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	5e-05
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	5e-05
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	5e-05
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	5e-05
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	6e-05
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	6e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	6e-05
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	6e-05
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	6e-05
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	6e-05
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	7e-05
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	9e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	1e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	1e-04
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	1e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	1e-04
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-04
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	1e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	1e-04
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	2e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	2e-04
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	2e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-04
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	2e-04
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	2e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	2e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	2e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-04
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	3e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	3e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	3e-04
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	3e-04
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	3e-04
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	3e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	3e-04
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-04
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	4e-04
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	4e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	4e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	4e-04
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	4e-04
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	4e-04
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	4e-04
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	4e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	4e-04
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	5e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	5e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	5e-04
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	5e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	5e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	6e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	6e-04
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	6e-04
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	6e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	6e-04
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	6e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	6e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	7e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	8e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	8e-04
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	8e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	8e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	8e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	8e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	8e-04
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	9e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	9e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	9e-04
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	9e-04
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.001
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	0.001
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	0.001
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	0.001
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	0.001
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	0.001
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	0.001
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	0.001
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.001
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.001
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	0.001
cd08226	328	cd08226, PK_STRAD_beta, Pseudokinase domain of STE	0.001
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	0.001
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.001
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	0.002
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	0.002
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.002
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	0.002
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.002
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	0.002
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	0.002
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.002
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.002
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	0.002
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.002
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	0.002
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	0.002
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	0.002
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	0.002
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.002
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	0.002
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	0.003
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	0.003
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	0.003
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.003
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.003
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	0.003
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.004
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.004
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	0.004
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	0.004
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVGPNMLT 59
              L+I +    GL YL     N IIHRD+K  NILLD  N   K++D GL+K+  +  +
Sbjct: 92  DEILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS 148

Query: 60  LCCYQSGTLG 69
           L     GT  
Sbjct: 149 LLKTIVGTPA 158

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 57.9 bits (141), Expect = 8e-11
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
             L   I  A+G+ YL        +HRD+ + N L+ E+ V K+SD GL++   +
Sbjct: 106 DLLSFAIQIAKGMEYL---ASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD 157

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 56.4 bits (137), Expect = 3e-10
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
           L   +  ARG+ YL        IHRD+ + N L+ EN V K+SD GL++   +
Sbjct: 105 LSFALQIARGMEYL---ESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYD 154

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 56.0 bits (136), Expect = 4e-10
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
             L++ +  A+G+ YL   ++N + HRD+ + N L+ EN V K+SD GL++
Sbjct: 103 DLLQMALQIAKGMEYL--ESKNFV-HRDLAARNCLVTENLVVKISDFGLSR 150

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
           L   +  ARG+ YL        IHRD+ + N L+ EN V K+SD GL++   +
Sbjct: 106 LSFALQIARGMEYL---ESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYD 155

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 11/63 (17%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV----GPNMLTLCCYQSG 66
            RGL YL     N IIHRD+K  NILLDEN V K++D GLAK       ++ T      G
Sbjct: 108 LRGLEYLH---SNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFV----G 160

Query: 67  TLG 69
           T  
Sbjct: 161 TPW 163

Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +C    +GL YL +   N IIHRD+K+ NILL  +   K+ D GL+ 
Sbjct: 103 VCKELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSA 146

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +L   +    G+ YL        +HRD+ + N+L+ E+ VAKVSD GLAK
Sbjct: 104 QLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV---GPNMLTLCCYQSGT 67
              L YL       I+HRD+K  NILLDE+   K++D GLA+    G  + T      GT
Sbjct: 107 LSALEYLH---SKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFV----GT 159

Query: 68  L 68
            
Sbjct: 160 P 160

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLTLCCYQ-SGT 67
            GL YL     N I+HRD+K  NIL+D + V K++D G AK +G            GT
Sbjct: 112 EGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGT 166

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           IC GA +GL YL +  R   IHRD+K+ NILL E    K++D G A +
Sbjct: 120 ICHGALQGLAYLHSHER---IHRDIKAGNILLTEPGTVKLADFGSASL 164

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT 59
           +WR  I I   RGL  L       I+HRD+KS NILL  N + K+ DLG++KV    + 
Sbjct: 105 IWR--IFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMA 158

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP 55
           L+  +  A G+ YL +     ++HRD+ + NIL+ E+ VAKVSD GLA+VG 
Sbjct: 103 LQFSLDVAEGMEYLESKK---LVHRDLAARNILVSEDGVAKVSDFGLARVGS 151

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 49.8 bits (120), Expect = 6e-08
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L   +     L YL +  R I+ HRD+K  NI L  N + K+ D G++KV
Sbjct: 106 LDWFVQLCLALKYLHS--RKIL-HRDIKPQNIFLTSNGLVKLGDFGISKV 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           I     +GL YL     N  IHRD+K+ NILL+E   AK++D G++
Sbjct: 104 ILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 49.5 bits (119), Expect = 9e-08
 Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 3/40 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           GL YL     N I+HRD+K +NIL++ + V K++D GLA+
Sbjct: 112 GLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLAR 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
            I     +GL YL T  R+II HRD+K +N+L++     K++D G++KV  N L  C
Sbjct: 103 YIARQILKGLDYLHT-KRHII-HRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC 157

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 9/54 (16%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV------GPNMLT 59
           RGL YL +     +IHRD+K +NIL++ N   K+ D GLA+           LT
Sbjct: 114 RGLKYLHSAN---VIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLT 164

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL YL     N I+HRD+K  N+L+  + V K++D GLA+
Sbjct: 113 RGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLAR 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           K+ +   + LHYL+   ++ +IHRDVK +NILLD +   K+ D G++
Sbjct: 118 KMTVAIVKALHYLKE--KHGVIHRDVKPSNILLDASGNVKLCDFGIS 162

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSG 66
           G+ YL     N+I+HRD+K  NIL D     K+ D G +K    + T+C   +G
Sbjct: 116 GVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASK---RLQTICSSGTG 163

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 15  HYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           H  R+   N ++HRD+K  NI LD N   K+ D GLAK+
Sbjct: 122 HN-RSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKI 159

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           GL YL        +HRD+K  NIL+D N V K++D G+AK 
Sbjct: 114 GLEYLHD---RNTVHRDIKGANILVDTNGVVKLADFGMAKQ 151

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
            L YL     N IIHRD+K  NIL+D N   K++D GL+KVG
Sbjct: 105 ALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVG 143

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP 55
            +G+ YL  G++  I HRD+ + NIL++   + K+SD GLAKV P
Sbjct: 119 CKGMDYL--GSQRYI-HRDLAARNILVESEDLVKISDFGLAKVLP 160

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y      + I+HRD+K  NIL++ + V K++D GLA+
Sbjct: 109 RGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLAR 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           KI +   + L+YL+   +  IIHRDVK +NILLD N   K+ D G++
Sbjct: 111 KIAVATVKALNYLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGIS 155

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT 59
           RGL Y+ +     ++HRD+K +NIL++EN   K+ D GLA++    +T
Sbjct: 119 RGLKYVHSAG---VVHRDLKPSNILINENCDLKICDFGLARIQDPQMT 163

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLTLCCYQSGTLG 69
            GL YL +   + I+HRD+K  NI LD N V K+ D G A  +  N  T+        G
Sbjct: 110 EGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAG 165

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 7   CIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA-KVGPNMLTLCCYQS 65
            I  A  L YL +     IIHRD+K  NILLDE     ++D  +A KV P+ LT     S
Sbjct: 108 EIVLA--LEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTS--TS 160

Query: 66  GTLG 69
           GT G
Sbjct: 161 GTPG 164

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 11/63 (17%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV--------GPNM 57
           + +   RGL YL     N IIHRD+K +N+LL +    K++D GLA+          P +
Sbjct: 113 LMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKV 169

Query: 58  LTL 60
           +TL
Sbjct: 170 VTL 172

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +GL YL       +IHRD+K+ NIL  ++ V K++D G+A
Sbjct: 110 QGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVA 146

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLG 49
           KI     +GL YL +  R II HRD+K +NILL      K+ D G
Sbjct: 109 KIAESVLKGLSYLHS--RKII-HRDIKPSNILLTRKGQVKLCDFG 150

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           GL+Y+    RN I+HRD+K+ NIL+ ++ + K++D GLA+ 
Sbjct: 131 GLYYIH---RNKILHRDMKAANILITKDGILKLADFGLARA 168

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLAKVGPNML 58
           G+HYL +   N ++HRD+K  NIL+     E  V K+ DLGLA++    L
Sbjct: 120 GVHYLHS---NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPL 166

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ARG+ YL   ++   IHRD+ + NIL+ EN+VAK++D GL++
Sbjct: 134 ARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 172

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
           IIHRD+K  NILLD++   K++D G AKV   
Sbjct: 123 IIHRDLKPENILLDKDMHIKITDFGTAKVLDP 154

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 9/52 (17%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +W+L       + + Y      + IIHRD+K  NIL+ E+ V K+ D G A+
Sbjct: 106 IWQL------LQAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV-GPN 56
           +WR  I I    GL +L +     I+HRD+KS N+ LD     K+ DLG+AK+   N
Sbjct: 103 VWRFFIQI--LLGLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN 154

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ YL        IHRD+ + NIL+ E+ V KV+D GLA++
Sbjct: 114 AEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLARL 153

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           W L +C      + YL     N  IHRD+ + N L+ E+ V KVSD GLA+
Sbjct: 101 WLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLAR 148

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           RGL YL +     I+HRD+K  N+L++ N V K+ D GLA+V
Sbjct: 114 RGLKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLARV 152

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           G++YL     N I+HRD+K+ NIL+D   + K++D GLA+ 
Sbjct: 127 GINYLH---ENHILHRDIKAANILIDNQGILKIADFGLARP 164

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 44.2 bits (104), Expect = 6e-06
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L+     A G+ YL   +    IHRD+ + N+L+ EN  +K++D GL++
Sbjct: 122 LQFASDVATGMQYL---SEKQFIHRDLAARNVLVGENLASKIADFGLSR 167

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +GL +      + I+HRD+K  N+L++   V K++D GLA+ 
Sbjct: 109 QGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARS 147

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ YL +  RN I HRD+ + NIL+ EN V K++D GLA++
Sbjct: 113 AEGMAYLES--RNYI-HRDLAARNILVGENLVCKIADFGLARL 152

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           KI +   + L YL +     +IHRDVK +N+L++ N   K+ D G++
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGIS 151

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           I     RGL YL     N +IHRD+K  NILL +N   K+ D G++
Sbjct: 118 ILRETLRGLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L +C+    G+ YL +   + +IHRD+ + N L+ EN V KVSD G+ + 
Sbjct: 103 LGMCLDVCEGMAYLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTRF 149

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV-GPNM-LTLC 61
           RG+ +L +   + I+HRD+K  NIL+  +   K++D GLA++    M LT  
Sbjct: 118 RGVDFLHS---HRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSV 166

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +GL YL       +IHRD+KS NILL ++   K++D G A
Sbjct: 127 QGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFA 163

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L++ + AA G+ YL +  +N I HRD+ + N L+ EN V K+SD G+++
Sbjct: 96  LQMSLDAAAGMEYLES--KNCI-HRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           KI +   +GL YL      II HRDVK +NIL++     K+ D G++  
Sbjct: 104 KIAVAVLKGLTYLHE-KHKII-HRDVKPSNILVNSRGQIKLCDFGVSGQ 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVV 72
           G+ YL +   N+I+HRD+K  NIL D     K+ D G +K    + T+C   +G   +  
Sbjct: 118 GVSYLHS---NMIVHRDIKGANILRDSVGNVKLGDFGASK---RLQTICLSGTGMKSVTG 171

Query: 73  DPF 75
            P+
Sbjct: 172 TPY 174

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
           II+RD+K  NILLD +   K++D GLAK   +
Sbjct: 114 IIYRDLKPENILLDADGHIKLTDFGLAKELSS 145

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKV------GPN 56
           L I       L YL       IIHRD+K  NILLD +  V K+ D GLAK+        +
Sbjct: 104 LFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSS 160

Query: 57  MLTLCCYQSGTLGL 70
           +  L     GT G 
Sbjct: 161 IPALPSTSVGTPGY 174

Length = 384

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ARG+ +L +      IHRD+ + N+L+ E+ V K++D GLA+
Sbjct: 142 ARGMEFLASKK---CIHRDLAARNVLVTEDHVMKIADFGLAR 180

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           LK  +     + YL     N  +HRD+ + N+L+ E+ VAKVSD GL K
Sbjct: 105 LKFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L +C     G+ YL    RN  IHRD+ + N L+    V KVSD G+ +
Sbjct: 103 LSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTR 148

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 3/40 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           GL YL +     I+HRD+K+ N+L+D + + K+SD G++K
Sbjct: 120 GLAYLHSKG---ILHRDLKADNLLVDADGICKISDFGISK 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
           RGL Y+ +     ++HRD+K +N+LL+ N   K+ D GLA+  
Sbjct: 119 RGLKYIHSAN---VLHRDLKPSNLLLNANCDLKICDFGLARTT 158

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 10  AARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
            A+G+ YL +      +HRD+ + N +LDE++  KV+D GLA+
Sbjct: 107 VAKGMEYLASKK---FVHRDLAARNCMLDESFTVKVADFGLAR 146

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           KI I   RGL YLR   ++ I+HRDVK +NIL++     K+ D G++
Sbjct: 103 KISIAVLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVS 147

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +GL+YL       IIHRD+K  NIL+D     K+SD G++K
Sbjct: 117 KGLNYLHNRG---IIHRDIKGANILVDNKGGIKISDFGISK 154

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           + L Y+ +G    +IHRD+K +NILL+ +   K++D GLA+
Sbjct: 118 KALKYIHSGN---VIHRDLKPSNILLNSDCRVKLADFGLAR 155

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
            G+ +L     N I+HRD+K++N+LL+   + K+ D GLA+
Sbjct: 117 SGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAR 154

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +C    +GL YL    +   IHRD+K  NILL E+   K++D G++
Sbjct: 106 VCRETLKGLAYLHETGK---IHRDIKGANILLTEDGDVKLADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
           W +++C+G  + +H  R      ++HRD+KS NI L +N   K+ D G A++  +     
Sbjct: 105 WFVQMCLGV-QHIHEKR------VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYA 157

Query: 62  CYQSGT 67
           C   GT
Sbjct: 158 CTYVGT 163

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           RGL Y+ +     ++HRD+K +N+LL+ N   K+ D GLA++
Sbjct: 117 RGLKYIHSAN---VLHRDLKPSNLLLNTNCDLKICDFGLARI 155

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +G+ Y+     N I+HRD+K  N+L+  + V K++D GLA++
Sbjct: 110 KGVAYMHA---NGIMHRDLKPANLLISADGVLKIADFGLARL 148

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ARG+ +L   +R  I HRD+ + NILL EN V K+ D GLA+
Sbjct: 183 ARGMEFL--ASRKCI-HRDLAARNILLSENNVVKICDFGLAR 221

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           GL YL     N  IHRD+K+ NILL E+   K++D G++
Sbjct: 114 GLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y+ +     +IHRD+K +N+L++E+   ++ D G+A+
Sbjct: 118 RGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMAR 155

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ARG+ +L   +R  I HRD+ + NILL EN V K+ D GLA+
Sbjct: 184 ARGMEFL--ASRKCI-HRDLAARNILLSENNVVKICDFGLAR 222

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLA-KVGPNMLTLCCYQ-SGTLGLVVDPFLRGKIDP 82
           IIHRDVK+ NI LDE   A + D G A K+  +  T  CY  SGTL       L   +DP
Sbjct: 206 IIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELL--ALDP 263

Query: 83  GCFKT 87
            C KT
Sbjct: 264 YCAKT 268

Length = 392

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 40.8 bits (95), Expect = 9e-05
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           K+ I   RGL YLR   ++ I+HRDVK +NIL++     K+ D G++
Sbjct: 107 KVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVS 151

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 9   GAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           G A G+ YL        +HRD+ + NIL++ N V KVSD GL++V
Sbjct: 114 GIASGMKYLSDMG---YVHRDLAARNILVNSNLVCKVSDFGLSRV 155

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ++  I  A G+ YL   ++N I HRD+ + N +L+EN    V+D GL+K
Sbjct: 116 VRFMIDIASGMEYL--SSKNFI-HRDLAARNCMLNENMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 9   GAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           GA +GL YL +     +IHRD+K+ NILL E    K++D G A +
Sbjct: 133 GALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASI 174

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ Y+    R   +HRD+++ NIL+ EN V KV+D GLA++
Sbjct: 112 ASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARL 151

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           LK  +  A G+ YL    RN I HRD+ + N +L E+    V+D GL+K
Sbjct: 116 LKFMVDIALGMEYL--SNRNFI-HRDLAARNCMLREDMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
            GL YL    +   IHRD+K+ NILL E    K++D G++
Sbjct: 109 LGLEYLHEEGK---IHRDIKAANILLSEEGDVKLADFGVS 145

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ YL    +N I HRD+ + N+L+ EN + KV+D GLA+V
Sbjct: 113 ASGMAYLEA--QNYI-HRDLAARNVLVGENNICKVADFGLARV 152

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 9   GAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           G A G+ YL        +HRD+ + NIL++ N   KVSD GL++V
Sbjct: 115 GIAAGMKYLSDMN---YVHRDLAARNILVNSNLECKVSDFGLSRV 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ARG+ YL +      IHRD+ + N+L+ EN V K++D GLA+
Sbjct: 147 ARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLAR 185

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLG 49
           +C+   + L +L       +IHRD+KS +ILL  +   K+SD G
Sbjct: 120 VCLAVLKALSFLHAQG---VIHRDIKSDSILLTSDGRVKLSDFG 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLTLC 61
           I++RD+K  N+LLD +   K++D G AK V     TLC
Sbjct: 122 IVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLC 159

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L      ARG+ YL   ++   IHRD+ + NIL+ EN+VAK++D GL++
Sbjct: 115 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 160

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 22/27 (81%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLA 51
           +++RD+K  NILLDE+   ++SDLGLA
Sbjct: 118 VVYRDLKPANILLDEHGHVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 9   GAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           G A G+ YL        +HRD+ + NIL++ N V KVSD GL++
Sbjct: 114 GIAAGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSR 154

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           A+G+ +L   +R  I HRD+ + NILL EN V K+ D GLA+
Sbjct: 189 AKGMEFL--ASRKCI-HRDLAARNILLSENNVVKICDFGLAR 227

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
           R L Y+ T     + HRD+K  NIL + +   K+ D GLA+V  N
Sbjct: 114 RALKYIHTAN---VFHRDLKPKNILANADCKLKICDFGLARVAFN 155

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 9   GAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           GA +GL YL +     +IHRDVK+ NILL E  + K+ D G A +
Sbjct: 123 GALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASI 164

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           K+ I   +GL YLR   ++ I+HRDVK +NIL++     K+ D G++
Sbjct: 107 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVS 151

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RG+ +      + IIHRD+K  NIL+ ++ V K+ D G A+
Sbjct: 111 RGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           W   IC    RGL +L    ++ +IHRD+K  N+LL EN   K+ D G++
Sbjct: 112 WIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVS 158

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ Y+    R   IHRD+++ NIL+ +N V K++D GLA++
Sbjct: 112 ADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARL 151

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ Y+    R   IHRD+++ N+L+ E+ + K++D GLA+V
Sbjct: 113 AEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARV 152

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 26  IHRDVKSTNILLDENWVAKVSDLGLAK 52
           IHRD+K  N+LLD     K+SD GL  
Sbjct: 123 IHRDIKPDNLLLDAKGHIKLSDFGLCT 149

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           RGL +L     N I+HRD+K  NIL+      K++D GLA++
Sbjct: 119 RGLDFLHA---NCIVHRDLKPENILVTSGGQVKLADFGLARI 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ARG+ YL +      IHRD+ + N+L+ E+ V K++D GLA+
Sbjct: 144 ARGMEYLESRR---CIHRDLAARNVLVTEDNVMKIADFGLAR 182

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           I  GA +GL YL +   + +IHRD+K+ NILL E    K++D G A  
Sbjct: 126 ITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASK 170

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 9   GAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           G A G+ YL   +    +HRD+ + NIL++ N V KVSD GL++ 
Sbjct: 114 GIASGMKYL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRR 155

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           A+G+ +L   ++N I HRDV + N+LL +  VAK+ D GLA+
Sbjct: 222 AQGMDFL--ASKNCI-HRDVAARNVLLTDGRVAKICDFGLAR 260

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +IHRD+KS NILL  N + K+ D G +K
Sbjct: 164 MIHRDIKSANILLCSNGLVKLGDFGFSK 191

Length = 496

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLTLC 61
           II+RD+K  N+LLD     KV+D G AK V     TLC
Sbjct: 139 IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLC 176

Length = 329

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK 52
           II+RD+K  NILLDE    K++D GL+K
Sbjct: 119 IIYRDLKPENILLDEEGHIKLTDFGLSK 146

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK---VGPNMLTL 60
            GL YL    R  IIHRDVK+ NI +++     + DLG A+   V P  L L
Sbjct: 168 EGLRYLH-AQR--IIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGL 216

Length = 357

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +  + YL    +   IHRD+ + N L+ EN + KV+D GL+++
Sbjct: 114 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRL 153

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L I I  A G+ YL +   +  +H+D+ + NIL+ E    K+SDLGL++
Sbjct: 127 LHIAIQIAAGMEYLSS---HFFVHKDLAARNILIGEQLHVKISDLGLSR 172

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVV 72
           G+ YL +   N+I+HRD+K  NIL D     K+ D G +K    + T+C   +G   +  
Sbjct: 118 GMSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASK---RLQTICMSGTGIRSVTG 171

Query: 73  DPF 75
            P+
Sbjct: 172 TPY 174

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L++C     G+ YL +      IHRD+ + N L+D+    KVSD GL++
Sbjct: 103 LEMCKDVCEGMAYLESKQ---FIHRDLAARNCLVDDQGCVKVSDFGLSR 148

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
           GL YL     N I++RD+K  N+LLD     K++D GL K G
Sbjct: 113 GLQYLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEG 151

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +GL YL +  +   IHRD+K+ N+LL E+   K++D G+A
Sbjct: 112 KGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +I  G    LH  R      I++RD+K  N+LLD++   ++SDLGLA
Sbjct: 103 QIICGLEH-LHQRR------IVYRDLKPENVLLDDHGNVRISDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ Y+    R   IHRD++S NIL+ +  V K++D GLA++
Sbjct: 112 AAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARL 151

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + L  C+  A+G++YL       ++HRD+ + N+L+      K++D GLAK+
Sbjct: 110 YLLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKL 158

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ ++    RN I HRD+++ NIL+  + V K++D GLA+V
Sbjct: 112 AEGMAFIEQ--RNYI-HRDLRAANILVSASLVCKIADFGLARV 151

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +GL YL +  +   IHRD+K+ N+LL E    K++D G+A
Sbjct: 112 KGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 7/52 (13%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           W ++IC+ A + +H  +      I+HRD+KS NI L ++   K+ D G+A+V
Sbjct: 106 WFVQICL-ALKHVHDRK------ILHRDIKSQNIFLTKDGTIKLGDFGIARV 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           W   IC    RGL +L     + +IHRD+K  N+LL EN   K+ D G++
Sbjct: 122 WIAYICREILRGLAHLHA---HKVIHRDIKGQNVLLTENAEVKLVDFGVS 168

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ARG+ YL +      IHRD+ + N+L+ E+ V K++D GLA+
Sbjct: 150 ARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLAR 188

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 14  LHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV---GPNMLTLCCYQSGTLGL 70
             YL       II+RD+K  N+LLD N   K+ D G AK    G    T C    GT   
Sbjct: 106 FEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFC----GTPEY 158

Query: 71  V 71
           V
Sbjct: 159 V 159

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
           W ++I    A  L YL       I+HRD+K+ N+ L    + KV DLG+A+V  N   + 
Sbjct: 107 WFVQI----AMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMA 159

Query: 62  CYQSGT 67
               GT
Sbjct: 160 STLIGT 165

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
           IIHRD+K  N+L+D+    K++D GL++ G
Sbjct: 118 IIHRDIKPENLLIDQTGHLKLTDFGLSRNG 147

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK 52
           II+RD+K  NILLD      ++D GL+K
Sbjct: 126 IIYRDIKLENILLDSEGHVVLTDFGLSK 153

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 13/28 (46%), Positives = 21/28 (75%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ++HRD+K  N+L+D   V K++D GLA+
Sbjct: 122 VLHRDLKPQNLLIDNKGVIKLADFGLAR 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAK 52
           L      A+G  YL     N  IHRD+ + N LL       VAK++D G+A+
Sbjct: 119 LFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGPGRVAKIADFGMAR 167

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 10  AARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            A  L YL    R+ IIHRD+K  N+L+      K++D GL+KV
Sbjct: 113 VALALDYLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSKV 153

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGL 50
           +C+   R L YL       +IHRD+KS +ILL  +   K+SD G 
Sbjct: 123 VCLSVLRALSYLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGF 164

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L I I  A G+ YL   + +  +HRD+ + N L+ E    K+SD GL++
Sbjct: 127 LHIAIQIAAGMEYL---SSHHFVHRDLAARNCLVGEGLTVKISDFGLSR 172

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +K  + AA G+ YL +      IHRD+ + N L+ EN V K+SD G+++
Sbjct: 96  VKFALDAAAGMAYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +GL YL +  +   IHRD+K+ N+LL E    K++D G+A
Sbjct: 112 KGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 38.1 bits (88), Expect = 9e-04
 Identities = 15/27 (55%), Positives = 22/27 (81%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLA 51
           +++RD+K  NILLDE+   ++SDLGLA
Sbjct: 118 VVYRDLKPANILLDEHGHVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 38.1 bits (88), Expect = 9e-04
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ARG+ YL +      IHRD+ + N+L+ E+ V K++D GLA+
Sbjct: 144 ARGMEYLASQK---CIHRDLAARNVLVTEDNVMKIADFGLAR 182

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTL 68
           G+ YL    R  I+HRD+K +N+L++     K++D G++++    +  C    GT+
Sbjct: 180 GIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTI 232

Length = 353

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 37.7 bits (87), Expect = 9e-04
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +C    +GL YL +  +   +HRD+K  NILL +N   K++D G+A
Sbjct: 111 VCRETLQGLAYLHSKGK---MHRDIKGANILLTDNGDVKLADFGVA 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLV 71
           +G+ YL +   N+I+HRD+K  NIL D     K+ D G +K    + T+C   +G   + 
Sbjct: 117 QGVSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASK---RIQTICMSGTGIKSVT 170

Query: 72  VDPF 75
             P+
Sbjct: 171 GTPY 174

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 25  IIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPNMLTLCCYQSGT 67
           I+HRD+KS NI L +N  VAK+ D G+A+   + + L     GT
Sbjct: 122 ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGT 165

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y+ +     IIHRD+K +NI ++E+   K+ D GLA+
Sbjct: 129 RGLKYIHSAG---IIHRDLKPSNIAVNEDCELKILDFGLAR 166

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP 55
           +IC    +G+ YL    R   +HRD+ + NIL++     K+ D GL KV P
Sbjct: 116 QIC----KGMEYL-GSKR--YVHRDLATRNILVESENRVKIGDFGLTKVLP 159

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 3/39 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           GL +L    +  II+RD+K  N+LLD +   ++SDLGLA
Sbjct: 109 GLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +     +GL+YL +  +   +HRD+K  NILL +N   K++D G++
Sbjct: 111 VSRETLQGLYYLHSKGK---MHRDIKGANILLTDNGHVKLADFGVS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP 55
           +IC G A  LH          IHRD+ + N+LLD + + K+ D GLAK  P
Sbjct: 115 QICEGMAY-LHSQH------YIHRDLAARNVLLDNDRLVKIGDFGLAKAVP 158

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ ++    R   IHRD+++ NIL+ E    K++D GLA++
Sbjct: 112 AEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARL 151

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y+ +     IIHRD+K +N+ ++E+   K+ D GLA+
Sbjct: 131 RGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLAR 168

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           A G+ YL + +    IHRD+ + N +L+EN    V+D GL+K
Sbjct: 122 ASGMEYLSSKS---FIHRDLAARNCMLNENMNVCVADFGLSK 160

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKV 53
           RGL Y+ +     ++HRD+K  N+ ++ E+ V K+ D GLA++
Sbjct: 125 RGLKYIHSAN---VLHRDLKPANVFINTEDLVLKIGDFGLARI 164

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase adapter protein beta

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDL 48
           I  GA RGL+YL    +N  IHR++K+++IL+  + +  +S L
Sbjct: 106 ILFGALRGLNYLH---QNGYIHRNIKASHILISGDGLVSLSGL 145

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. STRAD-beta is also referred to as ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein), since the human gene encoding it is located within the juvenile ALS2 critical region on chromosome 2q33-q34. It is not linked to the development of ALS2. Length = 328

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 7   CIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           C+ A   +H L        IHRD+K  NIL+D     K+SD GL+
Sbjct: 110 CVLAIEAVHKLG------FIHRDIKPDNILIDRGGHIKLSDFGLS 148

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 16/75 (21%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLG----LAKVGPNMLTLCCYQSGT 67
           GL YL     N I+HRD+K  N+L++  + V K+SD G    LA + P   T     +GT
Sbjct: 120 GLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETF----TGT 172

Query: 68  LGL----VVDPFLRG 78
           L      V+D   RG
Sbjct: 173 LQYMAPEVIDKGPRG 187

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL+Y     R  ++HRD+K  N+L++E    K++D GLA+
Sbjct: 115 RGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           A+G+ +L   ++N I HRD+ + NILL    + K+ D GLA+
Sbjct: 224 AKGMSFL--ASKNCI-HRDLAARNILLTHGRITKICDFGLAR 262

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLA 51
           IIHRDVK TN+L++ N   K+ D G++
Sbjct: 124 IIHRDVKPTNVLVNGNGQVKLCDFGVS 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +++ + A R LH  +      I+HRD+   NI+L E+    ++D GLAK
Sbjct: 120 VQMVL-ALRYLHKEKR-----IVHRDLTPNNIMLGEDDKVTITDFGLAK 162

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 4/41 (9%)

Query: 14  LHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKV 53
           LH++ T    +I+HRD+K+ NILLD++  V K+ D G++K+
Sbjct: 114 LHHVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGISKI 151

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           L  C+  A+G++YL     + ++HR++ + NILL  + + +++D G+A
Sbjct: 112 LNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDSIVQIADFGVA 156

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG----PNMLTLC 61
            L YL +G    I++RD+K  N++LD++   K++D GL K G      M T C
Sbjct: 107 ALDYLHSGK---IVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFC 156

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           GL  L    R  I++RD+K  NILLD+    ++SDLGLA
Sbjct: 114 GLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 27  HRDVKSTNILLDENWVAKVSDLGLAK 52
           HRD+K  N+L+    V K++D GLA+
Sbjct: 122 HRDLKPENLLVSGPEVVKIADFGLAR 147

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 7/47 (14%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +IC G    LH  R      I++RD+K  NILLD++   ++SDLGLA
Sbjct: 110 EICCGL-EDLHQER------IVYRDLKPENILLDDHGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 22  RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG--PNMLT 59
           R+ +I+RD+K  NILLD     K++D G+ K G    + T
Sbjct: 114 RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTT 153

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 26  IHRDVKSTNILLDENWVAKVSDLGLAK 52
           IHRD+K  NIL+D +   K++D GL K
Sbjct: 123 IHRDIKPDNILIDADGHIKLADFGLCK 149

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLA 51
           I++RD+K  N+LLD+    ++SDLGLA
Sbjct: 116 IVYRDMKPENVLLDDQGNCRLSDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ++ +C   A G+ +L        +HRD+ + N L+      KVS L L+K
Sbjct: 119 KVALCTQIALGMDHLSNAR---FVHRDLAARNCLVSSQREVKVSLLSLSK 165

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y     R  ++HRD+K  N+L++E    K++D GLA+
Sbjct: 115 RGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ++HRD+K  N+L+D     K++D GLA+
Sbjct: 120 VLHRDLKPQNLLIDREGALKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT 59
           RGL Y+ +     IIHRD+K +N+ ++E+   ++ D GLA+   + +T
Sbjct: 129 RGLKYIHSAG---IIHRDLKPSNVAVNEDCELRILDFGLARQADDEMT 173

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +L I    A G+ YL   +    +HRD+ + N L+ EN V K++D GL++
Sbjct: 132 QLCIAKQVAAGMAYL---SERKFVHRDLATRNCLVGENMVVKIADFGLSR 178

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           A+G+ +L   ++N I HRD+ + N+LL    + K+ D GLA+
Sbjct: 151 AKGMAFL--ASKNCI-HRDLAARNVLLTHGKIVKICDFGLAR 189

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 26  IHRDVKSTNILLDENWVAKVSDLGLAKV 53
           IHRDVK  NIL+ +    K+ D G A++
Sbjct: 122 IHRDVKPENILITKQGQIKLCDFGFARI 149

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGL-AKVGP 55
           +C    + L +L +   N +IHRD+KS NILL  +   K++D G  A++ P
Sbjct: 120 VCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP 167

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGL-AKVGP 55
           +C    + L +L +   N +IHRD+KS NILL  +   K++D G  A++ P
Sbjct: 121 VCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP 168

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y     +  I+HRD+K  N+L++E    K++D GLA+
Sbjct: 114 RGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK-VGPN 56
           A G+ YL +      +HRD+ + N+LL     AK+SD G+++ +G  
Sbjct: 105 AMGMAYLESKH---FVHRDLAARNVLLVNRHQAKISDFGMSRALGAG 148

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           I+HRD+K+ NI L +  + K+ D G++K+
Sbjct: 122 ILHRDIKTLNIFLTKAGLIKLGDFGISKI 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 22  RNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           R  I++RD+K  NILLD+    ++SDLGLA
Sbjct: 120 RERIVYRDLKPENILLDDRGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 14  LHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK----VGPNMLTLC 61
           L YL +     +++RD+K  N++LD++   K++D GL K     G  M T C
Sbjct: 108 LGYLHSCD---VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFC 156

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLTLC 61
           I++RD+K  N+LLD++   K++D G AK V     TLC
Sbjct: 152 IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLC 189

Length = 340

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.92
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.91
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.89
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.88
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.84
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.84
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.83
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.81
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.81
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.79
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.79
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.79
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.79
PHA02988	283	hypothetical protein; Provisional	99.78
KOG0578	550	consensus p21-activated serine/threonine protein k	99.78
KOG0198	313	consensus MEKK and related serine/threonine protei	99.78
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.78
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.78
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.77
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.77
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.77
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.77
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.77
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.77
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.77
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.77
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.77
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.76
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.76
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.76
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.76
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.76
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.76
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.76
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.76
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.76
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.75
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.75
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.75
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.75
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.75
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.75
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.75
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.75
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.74
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.74
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.74
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.74
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.74
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.74
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.74
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.74
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.74
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.74
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.74
PHA02882	294	putative serine/threonine kinase; Provisional	99.74
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.74
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.74
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.74
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.74
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.73
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.73
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.73
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.73
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.73
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.73
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.73
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.73
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.73
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.73
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.73
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.73
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.72
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.72
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.72
PTZ00283	496	serine/threonine protein kinase; Provisional	99.72
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.72
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.72
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.72
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.72
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.72
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.71
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.71
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.71
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.71
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.71
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.71
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.71
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.71
KOG0589	426	consensus Serine/threonine protein kinase [General	99.71
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.71
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.71
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.71
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.71
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.71
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.71
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.71
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.71
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.71
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.7
PTZ00267	478	NIMA-related protein kinase; Provisional	99.7
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.7
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.7
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.7
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.7
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.7
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.7
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.7
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.7
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.7
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.7
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.7
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.7
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.7
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.7
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.69
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.69
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.69
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.69
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.69
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.69
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.69
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.69
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.69
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.69
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.69
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.69
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.69
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.69
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.68
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.68
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.68
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.68
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.68
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.68
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.68
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.68
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.68
KOG0584	632	consensus Serine/threonine protein kinase [General	99.68
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.68
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.68
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.68
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.68
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.68
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.68
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.67
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.67
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.67
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.67
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.67
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.67
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.67
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.67
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.67
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.67
PHA03209	357	serine/threonine kinase US3; Provisional	99.67
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.67
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.67
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.67
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.66
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.66
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.66
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.66
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.66
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.66
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.66
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.66
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.66
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.66
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.66
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.66
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.66
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.66
PHA03212	391	serine/threonine kinase US3; Provisional	99.66
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.66
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.65
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.65
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.65
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.65
PTZ00036	440	glycogen synthase kinase; Provisional	99.65
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.65
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.65
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.65
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.65
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.65
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.65
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.65
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.65
PHA03211	461	serine/threonine kinase US3; Provisional	99.65
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.65
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.65
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.65
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.65
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.65
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.64
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.64
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.64
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.64
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.64
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.64
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.64
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.64
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.64
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.64
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.64
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.64
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.64
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.64
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.64
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.64
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.64
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.63
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.63
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.63
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.63
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.63
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.63
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.63
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.63
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.63
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.63
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.62
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.62
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.62
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.62
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.62
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.62
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.62
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.62
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.62
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.62
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.62
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.62
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.62
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.62
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.61
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.61
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.61
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.61
PHA03207	392	serine/threonine kinase US3; Provisional	99.61
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.61
PHA03210	501	serine/threonine kinase US3; Provisional	99.61
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.61
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.61
KOG3653	534	consensus Transforming growth factor beta/activin	99.61
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.61
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.61
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.61
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.61
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.6
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.6
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.6
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.6
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.6
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.6
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.6
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.6
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.59
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.59
PTZ00284	467	protein kinase; Provisional	99.59
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.59
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.59
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.59
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.59
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.59
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.59
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.59
PLN00181	793	protein SPA1-RELATED; Provisional	99.59
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.58
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.58
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.58
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.58
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.58
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.58
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.58
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.58
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.58
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.58
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.58
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.57
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.57
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.57
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.57
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.57
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.57
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.57
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.57
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.57
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.57
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.57
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.57
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.57
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.57
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.57
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.56
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.56
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.56
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.56
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.56
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.56
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.56
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.56
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.56
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.56
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.56
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.55
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.55
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.55
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.55
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.55
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.55
PLN00009	294	cyclin-dependent kinase A; Provisional	99.55
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.55
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.55
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.55
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.54
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.54
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.54
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.54
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.54
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.54
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.53
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.53
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.53
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.53
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.53
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.53
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.53
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.52
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.52
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.52
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.52
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.52
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.52
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.52
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.52
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.51
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.51
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.51
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.51
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.51
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.51
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.51
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.51
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.5
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.5
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.5
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.5
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.5
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.49
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.49
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.48
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.48
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.47
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.47
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.47
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.46
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.46
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.46
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.45
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.45
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.45
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.44
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.44
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.44
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.43
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.43
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.43
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.43
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.42
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.42
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.42
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.42
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.42
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.41
KOG0586	596	consensus Serine/threonine protein kinase [General	99.41
KOG0605	550	consensus NDR and related serine/threonine kinases	99.4
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.4
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.39
KOG0610	459	consensus Putative serine/threonine protein kinase	99.36
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.35
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.32
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.3
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.27
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.26
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.25
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.25
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.23
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.23
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.23
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.19
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.15
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.1
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.08
PRK09188	365	serine/threonine protein kinase; Provisional	99.07
KOG1152	772	consensus Signal transduction serine/threonine kin	99.06
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.04
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.03
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.0
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.98
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	98.97
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	98.93
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.93
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.9
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.87
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.84
PRK12274	218	serine/threonine protein kinase; Provisional	98.82
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.76
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.73
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.71
smart00090	237	RIO RIO-like kinase.	98.68
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.67
PRK14879	211	serine/threonine protein kinase; Provisional	98.66
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.62
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.6
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.57
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	98.53
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.52
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.48
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.44
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.43
PRK10345	210	hypothetical protein; Provisional	98.3
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	98.23
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.21
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	98.2
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	98.15
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.11
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.08
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.07
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.92
KOG1167	418	consensus Serine/threonine protein kinase of the C	97.87
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.87
KOG3087	229	consensus Serine/threonine protein kinase [General	97.86
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	97.83
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.82
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.79
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.7
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.68
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.66
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.56
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.5
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.12
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	96.95
PRK09902	216	hypothetical protein; Provisional	96.91
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	96.74
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	96.51
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	96.47
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	96.36
KOG1290	590	consensus Serine/threonine protein kinase [Signal	95.98
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	95.98
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	95.92
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	95.74
KOG1243	690	consensus Protein kinase [General function predict	95.65
COG0478	304	RIO-like serine/threonine protein kinase fused to	93.9
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	93.79
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	93.04
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	92.96
PRK05231	319	homoserine kinase; Provisional	92.77
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	92.73
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	92.53
COG4248	637	Uncharacterized protein with protein kinase and he	92.24
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	92.05
PF01636	239	APH: Phosphotransferase enzyme family This family	90.54
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	90.51
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	90.51
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	90.42
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	90.33
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	90.32
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	89.86
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	89.7
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	89.47
COG2334	331	Putative homoserine kinase type II (protein kinase	89.12
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	88.13
PRK10271	188	thiK thiamine kinase; Provisional	88.12
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	87.79
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	86.35
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	85.56
PLN02236	344	choline kinase	84.45
KOG0606	1205	consensus Microtubule-associated serine/threonine	83.2
COG0661	517	AarF Predicted unusual protein kinase [General fun	82.12

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.92  E-value=1.6e-24  Score=162.87  Aligned_cols=119  Identities=29%  Similarity=0.436  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCCCcceeeecccccccccCcccc--C
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR--G   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~   78 (154)
                      +|++||.|||+||.|||+...  |+|||||+.|+|++.++ ++||+|||+++.............|++.+|+||.++  .
T Consensus       143 ~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~  220 (362)
T KOG0192|consen  143 VRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEK  220 (362)
T ss_pred             HHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCC
Confidence            579999999999999995432  99999999999999997 999999999988765322333368899999999988  2


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                   ..+..++..+..++.+||+.||++||+|.+|+..|
T Consensus       221 ~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l  300 (362)
T KOG0192|consen  221 SPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRL  300 (362)
T ss_pred             CcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHH
Confidence                                                         23445888999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 044888          114 GLAWRQQGA  122 (154)
Q Consensus       114 ~~~~~~~~~  122 (154)
                      +.+......
T Consensus       301 ~~~~~~~~~  309 (362)
T KOG0192|consen  301 ESIMSHISS  309 (362)
T ss_pred             HHHHHhhcc
Confidence            998874443

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=3.1e-24  Score=161.68  Aligned_cols=118  Identities=44%  Similarity=0.658  Sum_probs=92.4

Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC-Ccceeeec-cccc----------
Q 044888            1 MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN-MLTLCCYQ-SGTL----------   68 (154)
Q Consensus         1 ~~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~-~~~~~~~~-~g~~----------   68 (154)
                      ++|++||.++|.||+|||+.+.++|+|||+|++|||+|.++.+||+|||+++.... ... .... .|++          
T Consensus       174 ~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~-~~~~~~gt~gY~~PEy~~~  252 (361)
T KOG1187|consen  174 ETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTS-VSTTVMGTFGYLAPEYAST  252 (361)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccc-eeeecCCCCccCChhhhcc
Confidence            37999999999999999999888999999999999999999999999999977654 110 0001 3333          


Q ss_pred             --------------------------------------------------ccccCcccc-CCCCc-chHHHHHHHHHHhh
Q 044888           69 --------------------------------------------------GLVVDPFLR-GKIDP-GCFKTFTDIAKKCL   96 (154)
Q Consensus        69 --------------------------------------------------~~~~~~~~~-~~~~~-~~~~~~~~l~~~C~   96 (154)
                                                                        .+++|+.+. +.++. .....+..++.+|+
T Consensus       253 g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~  332 (361)
T KOG1187|consen  253 GKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCL  332 (361)
T ss_pred             CCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHc
Confidence                                                              334444443 33333 46778999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHHHHHh
Q 044888           97 ADRGCDRPQMGDVLCNLGLAWRQ  119 (154)
Q Consensus        97 ~~~p~~RP~~~~v~~~L~~~~~~  119 (154)
                      +.+|..||+|.||+++|+.+...
T Consensus       333 ~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  333 RPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             CcCCCcCcCHHHHHHHHHhhccc
Confidence            99999999999999999766554

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.89  E-value=2.3e-23  Score=152.55  Aligned_cols=104  Identities=28%  Similarity=0.471  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC------
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG------   78 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------   78 (154)
                      +|+.+|.+||.|||+  ...|+|||+||+|+|++..+.+||||||+++.+..+  ....+.|+..||+||++.+      
T Consensus       182 ~ia~~VL~GL~YLh~--~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS--~a~tfvGT~~YMsPERi~g~~Ys~~  257 (364)
T KOG0581|consen  182 KIARAVLRGLSYLHE--ERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS--IANTFVGTSAYMSPERISGESYSVK  257 (364)
T ss_pred             HHHHHHHHHHHHHhh--ccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh--hcccccccccccChhhhcCCcCCcc
Confidence            678999999999995  255999999999999999999999999999988765  4556789999999999876      


Q ss_pred             -------------------------------------------CCCcc-hHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -------------------------------------------KIDPG-CFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -------------------------------------------~~~~~-~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                 ..|.. ++.++..++..|+++||.+||+..|++..
T Consensus       258 sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  258 SDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             cceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                                                       12233 78889999999999999999999999753

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.88  E-value=1.2e-22  Score=154.20  Aligned_cols=116  Identities=28%  Similarity=0.380  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-c---------------------
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-T---------------------   59 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~---------------------   59 (154)
                      +-++++.|||.|++||.+   +.+|||||.+.|||++.+..+||+|||+++....+. +                     
T Consensus       304 ~Ll~~a~qIaeGM~YLes---~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~  380 (468)
T KOG0197|consen  304 QLLDFAAQIAEGMAYLES---KNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGK  380 (468)
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCC
Confidence            357899999999999995   559999999999999999999999999999654320 0                     


Q ss_pred             --------------eeeecccc----------cccccCccccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           60 --------------LCCYQSGT----------LGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        60 --------------~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                    +.....|.          ....+....+.+.|..|+..+++||..||+.+|++||||..+...|+.
T Consensus       381 FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~  460 (468)
T KOG0197|consen  381 FSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLED  460 (468)
T ss_pred             cccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHH
Confidence                          00000111          111233444557889999999999999999999999999999999988


Q ss_pred             HHHhc
Q 044888          116 AWRQQ  120 (154)
Q Consensus       116 ~~~~~  120 (154)
                      +....
T Consensus       461 ~~~~~  465 (468)
T KOG0197|consen  461 FFTST  465 (468)
T ss_pred             hhhcc
Confidence            76543

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.84  E-value=4.2e-21  Score=148.16  Aligned_cols=117  Identities=29%  Similarity=0.404  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC--cceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      +-++||.|||+|+.|||   .+.|+|+|||+.||++..++++||+|||++..-...  ........|.+.||+||.++. 
T Consensus       489 ~~idIAqQiaqGM~YLH---AK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmq  565 (678)
T KOG0193|consen  489 TTIDIAQQIAQGMDYLH---AKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQ  565 (678)
T ss_pred             HHHHHHHHHHHhhhhhh---hhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhc
Confidence            45789999999999999   455999999999999999999999999998543221  001111234455555555432 


Q ss_pred             --------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 --------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 --------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                                        ....+|+.++.+|+..||..++++||.|.+
T Consensus       566 d~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~  645 (678)
T KOG0193|consen  566 DDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQ  645 (678)
T ss_pred             ccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHH
Confidence                                                              123468999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 044888          109 VLCNLGLAWRQQG  121 (154)
Q Consensus       109 v~~~L~~~~~~~~  121 (154)
                      |+..|+.+....+
T Consensus       646 il~~l~~l~~~~p  658 (678)
T KOG0193|consen  646 LLSKLEELLPSLP  658 (678)
T ss_pred             HHHHHHHhhhccc
Confidence            9999998887543

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.84  E-value=2.1e-21  Score=149.56  Aligned_cols=108  Identities=30%  Similarity=0.492  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      ++|..+||.|+.|||..+   |||||||+.|||+..+..+||+|||.++..... +....+.|+..+|+||.++.     
T Consensus       215 v~Wsk~IA~GM~YLH~hK---IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~-STkMSFaGTVaWMAPEvIrnePcsE  290 (904)
T KOG4721|consen  215 VDWSKGIAGGMNYLHLHK---IIHRDLKSPNILISYDDVVKISDFGTSKELSDK-STKMSFAGTVAWMAPEVIRNEPCSE  290 (904)
T ss_pred             HHHHHHhhhhhHHHHHhh---HhhhccCCCceEeeccceEEeccccchHhhhhh-hhhhhhhhhHhhhCHHHhhcCCccc
Confidence            567899999999999554   999999999999999999999999999887664 55567889999999998875     


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                              +.|..|+.-+.-|+..||+..|.+||+|++|+..|+-
T Consensus       291 KVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldI  367 (904)
T KOG4721|consen  291 KVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDI  367 (904)
T ss_pred             ccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhh
Confidence                                                    4577899999999999999999999999999998874

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.83  E-value=4.1e-20  Score=138.11  Aligned_cols=113  Identities=24%  Similarity=0.266  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~--   78 (154)
                      .++++.|++.||.|||   ..+++||||||.||+++.++.+|++|||+++.......  ......++..+++||.+.+  
T Consensus       176 ~~~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  252 (338)
T cd05102         176 LICYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKV  252 (338)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCC
Confidence            4678999999999999   55699999999999999999999999999875422100  0000111122333332111  


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ..+..++..+.+|+.+||+.+|++||++.+|++.|+
T Consensus       253 ~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~  332 (338)
T cd05102         253 YTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVEILG  332 (338)
T ss_pred             CCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence                                                        112345678999999999999999999999999999


Q ss_pred             HHHH
Q 044888          115 LAWR  118 (154)
Q Consensus       115 ~~~~  118 (154)
                      .+..
T Consensus       333 ~~~~  336 (338)
T cd05102         333 DLLQ  336 (338)
T ss_pred             HHHh
Confidence            8775

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=4.4e-20  Score=146.84  Aligned_cols=115  Identities=22%  Similarity=0.309  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeeccc-----ccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSG-----TLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g-----~~~~~~~~~~   76 (154)
                      +-+.||.|||.|++||-+..   ++||||...|+|++.+..+||+|||+++-....   ..+..+     .+.+|.||.+
T Consensus       604 q~L~iA~QIAaGM~YLs~~~---FVHRDLATRNCLVge~l~VKIsDfGLsRdiYss---DYYk~~~~t~lPIRWMppEsI  677 (774)
T KOG1026|consen  604 QFLHIATQIAAGMEYLSSHH---FVHRDLATRNCLVGENLVVKISDFGLSRDIYSS---DYYKVRGNTLLPIRWMPPESI  677 (774)
T ss_pred             HHHHHHHHHHHHHHHHHhCc---ccccchhhhhceeccceEEEecccccchhhhhh---hhhcccCCceeeeecCCHHHh
Confidence            46889999999999999554   999999999999999999999999999875431   000000     0111111111


Q ss_pred             ---------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           77 ---------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        77 ---------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                   .-..|.+|+.++++||..||+.+|.+||+|+||-.
T Consensus       678 ly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~  757 (774)
T KOG1026|consen  678 LYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHS  757 (774)
T ss_pred             hcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                                                         12678899999999999999999999999999999


Q ss_pred             HHHHHHHhcCC
Q 044888          112 NLGLAWRQQGA  122 (154)
Q Consensus       112 ~L~~~~~~~~~  122 (154)
                      .|+......+.
T Consensus       758 ~L~~~~~~s~~  768 (774)
T KOG1026|consen  758 RLQAWAQASPK  768 (774)
T ss_pred             HHHHHHhcCcc
Confidence            99988776553

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=4.9e-20  Score=142.19  Aligned_cols=105  Identities=28%  Similarity=0.305  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      -.+..||+.||.|||   +.+|+|||||..|++++.+..+||+|||+|..+..+.......+|++.|++||.+..     
T Consensus       121 ry~l~QIv~GlkYLH---~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsf  197 (592)
T KOG0575|consen  121 RYFLRQIVEGLKYLH---SLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSF  197 (592)
T ss_pred             HHHHHHHHHHHHHHH---hcCceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCC
Confidence            357899999999999   556999999999999999999999999999998876667778899999999998854     


Q ss_pred             --------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 --------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 --------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                            ..|...+.+..+|+...|+.+|.+|||+.+|+.
T Consensus       198 EvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  198 EVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             chhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                                                  234556777889999999999999999999984

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.79  E-value=1.4e-19  Score=143.30  Aligned_cols=119  Identities=24%  Similarity=0.359  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-----------------------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-----------------------   59 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-----------------------   59 (154)
                      -+.+..+||.|+.||-   +.+.+||||...|||++.+..||++|||+++.+.++..                       
T Consensus       733 LVgMLrGIAsGMkYLs---dm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~R  809 (996)
T KOG0196|consen  733 LVGMLRGIASGMKYLS---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYR  809 (996)
T ss_pred             HHHHHHHHHHHhHHHh---hcCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhc
Confidence            3567899999999998   66799999999999999999999999999998754311                       


Q ss_pred             ---------------eeeecccc----------cccccCccccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           60 ---------------LCCYQSGT----------LGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        60 ---------------~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                     |+....|.          ....+.+.++.+.|.+|+..+++||..|||+|-.+||.|.+|+..|.
T Consensus       810 KFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lD  889 (996)
T KOG0196|consen  810 KFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLD  889 (996)
T ss_pred             ccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence                           22222121          11124555666889999999999999999999999999999999999


Q ss_pred             HHHHhcCCCc
Q 044888          115 LAWRQQGAVD  124 (154)
Q Consensus       115 ~~~~~~~~~~  124 (154)
                      +++.......
T Consensus       890 klIrnP~SLk  899 (996)
T KOG0196|consen  890 KLIRNPNSLK  899 (996)
T ss_pred             HHhcCchhhc
Confidence            9998766554

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.79  E-value=4.1e-19  Score=136.40  Aligned_cols=119  Identities=28%  Similarity=0.423  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcc------
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPF------   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~------   75 (154)
                      +|++++.++|.||+|||   .+.++||||.+.|+|++.++.+|++|||+++.............-.+.+++||.      
T Consensus       263 ek~~~~~~AA~Gl~YLh---~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~  339 (474)
T KOG0194|consen  263 EKLRFCYDAARGLEYLH---SKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIF  339 (474)
T ss_pred             HHHHHHHHHHhHHHHHH---HCCCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCcc
Confidence            58899999999999999   555999999999999999999999999998776421000000000111111111      


Q ss_pred             ----------------------------------------ccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           76 ----------------------------------------LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        76 ----------------------------------------~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                              .+...+...+.++..++..||..+|++||+|.+|.+.|+.
T Consensus       340 s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~  419 (474)
T KOG0194|consen  340 SFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEA  419 (474)
T ss_pred             ccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHH
Confidence                                                    1224556789999999999999999999999999999999


Q ss_pred             HHHhcCCC
Q 044888          116 AWRQQGAV  123 (154)
Q Consensus       116 ~~~~~~~~  123 (154)
                      +.......
T Consensus       420 ~~~~~~~~  427 (474)
T KOG0194|consen  420 LEKKKEAF  427 (474)
T ss_pred             HHhccccc
Confidence            99877754

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.6e-19  Score=133.19  Aligned_cols=102  Identities=27%  Similarity=0.318  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC---CcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN---WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~---~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ++.|++.|+.|||   +.+|+||||||.|||+..+   ..+||+|||+++..+. .+.....+|++.|++||.+..    
T Consensus       281 ~f~Qll~avkYLH---~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~-~sfm~TlCGTpsYvAPEVl~~kg~~  356 (475)
T KOG0615|consen  281 LFKQLLTAVKYLH---SQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGE-GSFMKTLCGTPSYVAPEVLASKGVE  356 (475)
T ss_pred             HHHHHHHHHHHHH---HcCcccccCCcceEEeccCCcceEEEecccchhhcccc-ceehhhhcCCccccChhheecCCee
Confidence            6789999999999   6679999999999999766   6789999999999874 455567789999999988754    


Q ss_pred             -----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                     ........+..+++.+++..||++||++.|++.
T Consensus       357 ~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  357 YYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             cccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence                                                           011234677889999999999999999999974

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.79  E-value=4.3e-19  Score=130.77  Aligned_cols=109  Identities=20%  Similarity=0.285  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~---   77 (154)
                      .++++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||+++........  .....++..+++||.+.   
T Consensus       140 ~~~i~~~i~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  216 (304)
T cd05096         140 LLHVALQIASGMKYLS---SLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGK  216 (304)
T ss_pred             HHHHHHHHHHHHHHHH---HCCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCC
Confidence            4689999999999999   556999999999999999999999999998754221000  00000111122222110   


Q ss_pred             --------------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           78 --------------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        78 --------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                        ...++.++..+.+++.+||+.+|++||++.
T Consensus       217 ~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~  296 (304)
T cd05096         217 FTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFS  296 (304)
T ss_pred             CCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHH
Confidence                                                              012345677899999999999999999999


Q ss_pred             HHHHHHH
Q 044888          108 DVLCNLG  114 (154)
Q Consensus       108 ~v~~~L~  114 (154)
                      +|.+.|+
T Consensus       297 ~i~~~l~  303 (304)
T cd05096         297 DIHAFLT  303 (304)
T ss_pred             HHHHHHh
Confidence            9998886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PHA02988 hypothetical protein; Provisional

Probab=99.78  E-value=7.6e-19  Score=128.62  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      ++++++.|++.||.|||..  .+++||||+|.|++++.++.+|++|||+++.......   ...++..+++||.+     
T Consensus       123 ~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~y~aPE~~~~~~~  197 (283)
T PHA02988        123 TKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPF---KNVNFMVYFSYKMLNDIFS  197 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhccccc---cccCcccccCHHHhhhccc
Confidence            4678999999999999952  3577999999999999999999999999875332100   11122222222222     


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                +...+..++..+.+++.+||+.||++||++.+|+..|+
T Consensus       198 ~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~  277 (283)
T PHA02988        198 EYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLS  277 (283)
T ss_pred             cccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHH
Confidence                                                      11233467889999999999999999999999999999


Q ss_pred             HHHH
Q 044888          115 LAWR  118 (154)
Q Consensus       115 ~~~~  118 (154)
                      .+..
T Consensus       278 ~~~~  281 (283)
T PHA02988        278 LYKF  281 (283)
T ss_pred             HHHh
Confidence            8754

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.78  E-value=4.8e-19  Score=135.76  Aligned_cols=104  Identities=26%  Similarity=0.321  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC------
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG------   78 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------   78 (154)
                      .|+.++++||+|||   ..+|+|||||+.|||++.++.+||+|||++..+....+......|+++||+||.+..      
T Consensus       373 ~Icre~l~aL~fLH---~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~K  449 (550)
T KOG0578|consen  373 AICREILQGLKFLH---ARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPK  449 (550)
T ss_pred             HHHHHHHHHHHHHH---hcceeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCcc
Confidence            46789999999999   666999999999999999999999999999988776666777789999999887643      


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ..+...+..+.++..+|++.|+++||++.|+++
T Consensus       450 VDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  450 VDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             ccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhc
Confidence                                                    223446778999999999999999999999985

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.78  E-value=1.1e-18  Score=128.44  Aligned_cols=111  Identities=29%  Similarity=0.331  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccCCCCc---ceeeecccccccccCcccc-C
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVGPNML---TLCCYQSGTLGLVVDPFLR-G   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~~~~~---~~~~~~~g~~~~~~~~~~~-~   78 (154)
                      .++..||+.||.|||   +.+++|+|||+.|||++. ++.+||+|||.++......   .......|+..+|+||.+. +
T Consensus       120 ~~ytr~iL~GL~ylH---s~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g  196 (313)
T KOG0198|consen  120 RRYTRQILEGLAYLH---SKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNG  196 (313)
T ss_pred             HHHHHHHHHHHHHHH---hCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCC
Confidence            467899999999999   566999999999999999 7999999999988765311   1123456777777777665 2


Q ss_pred             ----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                    ..|...+.+..+++..|++.+|++|||+.+++..
T Consensus       197 ~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~h  276 (313)
T KOG0198|consen  197 EVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEH  276 (313)
T ss_pred             CcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhC
Confidence                                                          1223345578899999999999999999999876


Q ss_pred             HHHHH
Q 044888          113 LGLAW  117 (154)
Q Consensus       113 L~~~~  117 (154)
                      .--..
T Consensus       277 pf~~~  281 (313)
T KOG0198|consen  277 PFLKQ  281 (313)
T ss_pred             hhhhc
Confidence            55443

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.78  E-value=2.6e-19  Score=129.37  Aligned_cols=109  Identities=32%  Similarity=0.437  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~---   76 (154)
                      ++++|+.|++.||.|||+   .+++|++|++.||+++.++.+||+|||++........  ..........+++||.+   
T Consensus       104 ~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  180 (259)
T PF07714_consen  104 QRLSIAIQIAEALSYLHS---NNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDG  180 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHS
T ss_pred             cccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999999999995   4599999999999999999999999999877622100  00001111122222111   


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                ....+..++..+++++..||+.+|++||+|.+|++.|
T Consensus       181 ~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  181 EYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             EESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence                                                      1133456788999999999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.78  E-value=1.4e-18  Score=128.76  Aligned_cols=115  Identities=23%  Similarity=0.329  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeee--cccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCY--QSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~--~~g~~~~~~~~~~----   76 (154)
                      .++++.|++.||.|||   ..+++|+||++.||+++.++.+||+|||+++...........  ..++..+++++.+    
T Consensus       111 ~~~~~~qi~~~L~~LH---~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~  187 (316)
T cd05108         111 LLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRI  187 (316)
T ss_pred             HHHHHHHHHHHHHHHH---hcCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCC
Confidence            4678999999999999   556999999999999999999999999999765431110000  0011112222211    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ..+.+..++.++.+++..||+.+|.+||++.+++..|..
T Consensus       188 ~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~  267 (316)
T cd05108         188 YTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSK  267 (316)
T ss_pred             CCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence                                                     012234466789999999999999999999999999988


Q ss_pred             HHHhc
Q 044888          116 AWRQQ  120 (154)
Q Consensus       116 ~~~~~  120 (154)
                      +....
T Consensus       268 ~~~~~  272 (316)
T cd05108         268 MARDP  272 (316)
T ss_pred             HHcCC
Confidence            86544

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.77  E-value=3.9e-19  Score=145.63  Aligned_cols=118  Identities=21%  Similarity=0.262  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC-Ccceeeec-ccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN-MLTLCCYQ-SGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~-~~~~~~~~-~g~~~~~~~~~~~---   77 (154)
                      -+.|+.|||.|+.||+   .+.++||||...|+|++....+||+|||+++-... ........ .-.+.+|.||.+.   
T Consensus       804 Ll~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~i  880 (1025)
T KOG1095|consen  804 LLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGI  880 (1025)
T ss_pred             HHHHHHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcc
Confidence            4689999999999999   55599999999999999999999999999983322 11000000 0112333333332   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                .+.|..|+..+++||..||+.+|++||+|..|+..+..
T Consensus       881 FtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~  960 (1025)
T KOG1095|consen  881 FTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPA  960 (1025)
T ss_pred             cccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhh
Confidence                                                      26778999999999999999999999999999999998


Q ss_pred             HHHhcCCC
Q 044888          116 AWRQQGAV  123 (154)
Q Consensus       116 ~~~~~~~~  123 (154)
                      +.......
T Consensus       961 i~~~~~~~  968 (1025)
T KOG1095|consen  961 ISNAALGT  968 (1025)
T ss_pred             hhhhhccC
Confidence            88754433

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.77  E-value=1.1e-18  Score=127.21  Aligned_cols=110  Identities=18%  Similarity=0.242  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~---   77 (154)
                      .++++.|++.||.|||   ..+++|+|+||.||+++.++.+|++|||+++........  .....++..+++||.+.   
T Consensus       126 ~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  202 (283)
T cd05091         126 FVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGK  202 (283)
T ss_pred             HHHHHHHHHHHHHHHH---HcCccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCC
Confidence            4678899999999999   556999999999999999999999999987654321100  00001111222222111   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++..+.+++..||+.+|++||++.+|+..|+.
T Consensus       203 ~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         203 FSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             CCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence                                                      12345678889999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=8e-19  Score=125.47  Aligned_cols=114  Identities=20%  Similarity=0.248  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCC-CCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTR-NIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~-~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      +-+++..|++.||..+|+..+ ..++||||||.||+++.++.+|++|||+++++....+......|++.||.||.+.+  
T Consensus       125 ~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~  204 (375)
T KOG0591|consen  125 TVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESG  204 (375)
T ss_pred             HHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCC
Confidence            457899999999999997321 23999999999999999999999999999999887777777889999999998864  


Q ss_pred             ---------------------------------------CC---C-cchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 ---------------------------------------KI---D-PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 ---------------------------------------~~---~-~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                             ++   | ...+.++.+|+..|+..||+.||+.-.++..++.
T Consensus       205 Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  205 YNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             CCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence                                                   12   2 3467889999999999999999986555544443

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.77  E-value=1.7e-18  Score=131.49  Aligned_cols=111  Identities=22%  Similarity=0.278  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~--   78 (154)
                      .++++.|++.||.|||   ..+++|+||||.||+++.+..+|++|||+++.........  ....++..+++||.+.+  
T Consensus       216 ~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  292 (375)
T cd05104         216 LLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCV  292 (375)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCC
Confidence            5678999999999999   5569999999999999999999999999986543211100  00011112222222111  


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ..+...+.++.+|+..||+.||++||++.+|++.|+
T Consensus       293 ~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~  372 (375)
T cd05104         293 YTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIE  372 (375)
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHH
Confidence                                                        112234678999999999999999999999999998


Q ss_pred             HH
Q 044888          115 LA  116 (154)
Q Consensus       115 ~~  116 (154)
                      +.
T Consensus       373 ~~  374 (375)
T cd05104         373 QQ  374 (375)
T ss_pred             hh
Confidence            63

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.77  E-value=2.4e-18  Score=128.91  Aligned_cols=114  Identities=25%  Similarity=0.286  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--   77 (154)
                      .+.+++.|++.||.|||   ..+++||||+|.||+++.++.++|+|||++..+.....  ......++..+++||.+.  
T Consensus       174 ~~~~~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  250 (337)
T cd05054         174 DLISYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDK  250 (337)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCC
Confidence            35778999999999999   55699999999999999999999999999876422100  000001112222222110  


Q ss_pred             ---------------------C-----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 ---------------------G-----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 ---------------------~-----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                           +                       ..+...+.++.+|+.+||+.+|++||++.||++.|
T Consensus       251 ~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l  330 (337)
T cd05054         251 VYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEIL  330 (337)
T ss_pred             CCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence                                 1                       11223456889999999999999999999999999


Q ss_pred             HHHHH
Q 044888          114 GLAWR  118 (154)
Q Consensus       114 ~~~~~  118 (154)
                      +.+.+
T Consensus       331 ~~~~~  335 (337)
T cd05054         331 GDLLQ  335 (337)
T ss_pred             HHHHh
Confidence            98775

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.77  E-value=3.4e-18  Score=126.01  Aligned_cols=115  Identities=23%  Similarity=0.317  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~--   78 (154)
                      +++++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||+++........  .....++..+++||.+.+  
T Consensus       139 ~~~~~~qi~~al~~LH---~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  215 (304)
T cd05101         139 LVSCTYQVARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRV  215 (304)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCC
Confidence            5678899999999999   566999999999999999999999999998765321100  000111122333322110  


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                 ..+..++..+.+++.+||+.+|++||++.+|++.|++
T Consensus       216 ~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  295 (304)
T cd05101         216 YTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDR  295 (304)
T ss_pred             CCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHH
Confidence                                                       1233466789999999999999999999999999999


Q ss_pred             HHHhc
Q 044888          116 AWRQQ  120 (154)
Q Consensus       116 ~~~~~  120 (154)
                      +....
T Consensus       296 ~~~~~  300 (304)
T cd05101         296 ILTLT  300 (304)
T ss_pred             HHHhh
Confidence            88754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.77  E-value=2.2e-18  Score=130.81  Aligned_cols=112  Identities=23%  Similarity=0.261  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~---   77 (154)
                      .++++.|++.||.|||   ..+++||||+|.||+++.++.++|+|||+++........  .....++..+++||.+.   
T Consensus       214 ~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  290 (374)
T cd05106         214 LLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCV  290 (374)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCC
Confidence            4678999999999999   566999999999999999999999999998654321110  00001112233333211   


Q ss_pred             --------------------C-----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 --------------------G-----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 --------------------~-----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                          +                       ..+...+.++.+++.+||+.+|++||++.+|++.|+
T Consensus       291 ~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~  370 (374)
T cd05106         291 YTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQ  370 (374)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                                1                       111234678999999999999999999999999999


Q ss_pred             HHH
Q 044888          115 LAW  117 (154)
Q Consensus       115 ~~~  117 (154)
                      ++.
T Consensus       371 ~~~  373 (374)
T cd05106         371 RQL  373 (374)
T ss_pred             HHh
Confidence            864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.77  E-value=3e-18  Score=123.41  Aligned_cols=111  Identities=23%  Similarity=0.261  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee---eecccccccccCccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC---CYQSGTLGLVVDPFL--   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~~~~g~~~~~~~~~~--   76 (154)
                      +.++++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||++..........   ....++..+++||.+  
T Consensus        96 ~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  172 (257)
T cd05116          96 NITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNY  172 (257)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhcc
Confidence            45788999999999999   5669999999999999999999999999987653321100   000011122222211  


Q ss_pred             -------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 -------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 -------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                 ....+..++.++.+++..||+.+|++||++.+|+..|
T Consensus       173 ~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l  252 (257)
T cd05116         173 YKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRL  252 (257)
T ss_pred             CCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHH
Confidence                                                       1123445788999999999999999999999999999


Q ss_pred             HH
Q 044888          114 GL  115 (154)
Q Consensus       114 ~~  115 (154)
                      ++
T Consensus       253 ~~  254 (257)
T cd05116         253 RN  254 (257)
T ss_pred             hc
Confidence            85

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.77  E-value=2.9e-18  Score=124.12  Aligned_cols=111  Identities=27%  Similarity=0.354  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~----   76 (154)
                      .+.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||+++........  .....++..+++++.+    
T Consensus       114 ~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~  190 (272)
T cd05075         114 LVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRV  190 (272)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCC
Confidence            4678899999999999   556999999999999999999999999998764321100  0000000111111100    


Q ss_pred             ------------------c-----------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 ------------------R-----------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 ------------------~-----------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                        .                       ...+..++..+.+++.+||+.+|++||++.+|++.|+.
T Consensus       191 ~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~  270 (272)
T cd05075         191 YTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEK  270 (272)
T ss_pred             cChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence                              0                       02234567889999999999999999999999999987


Q ss_pred             H
Q 044888          116 A  116 (154)
Q Consensus       116 ~  116 (154)
                      +
T Consensus       271 ~  271 (272)
T cd05075         271 A  271 (272)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.76  E-value=1.4e-18  Score=135.30  Aligned_cols=112  Identities=21%  Similarity=0.331  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee-ecccccccccCccc------
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC-YQSGTLGLVVDPFL------   76 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-~~~g~~~~~~~~~~------   76 (154)
                      +.++.|++.+|.|||+   ..++|||+...|||+.....+|++|||+++.+....-... ...-.+.+|+||.+      
T Consensus       494 ~ly~~Qi~talaYLeS---krfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFT  570 (974)
T KOG4257|consen  494 TLYCYQICTALAYLES---KRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFT  570 (974)
T ss_pred             HHHHHHHHHHHHHHHh---hchhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhccc
Confidence            4578999999999995   5599999999999999999999999999998865311000 01112233333333      


Q ss_pred             ---------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 044888           77 ---------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus        77 ---------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~  117 (154)
                                                             +.+.|++|+..++.|+.+||.++|.+||.|.++...|..+.
T Consensus       571 tASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~  650 (974)
T KOG4257|consen  571 TASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVL  650 (974)
T ss_pred             chhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHH
Confidence                                                   22678899999999999999999999999999999999887


Q ss_pred             H
Q 044888          118 R  118 (154)
Q Consensus       118 ~  118 (154)
                      +
T Consensus       651 q  651 (974)
T KOG4257|consen  651 Q  651 (974)
T ss_pred             H
Confidence            6

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.76  E-value=2.1e-18  Score=125.65  Aligned_cols=110  Identities=22%  Similarity=0.289  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~---   77 (154)
                      .+.++.|++.||.|||   ..+++|+||+|.||+++.++.++|+|||++........  ......++..+++||.+.   
T Consensus       126 ~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  202 (283)
T cd05048         126 FLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGK  202 (283)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCc
Confidence            4678999999999999   55699999999999999999999999998865422100  000001112222222111   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++.++.+|+.+||+.+|.+||++.+|++.|+.
T Consensus       203 ~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         203 FTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             CchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence                                                      12234567899999999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.76  E-value=3.7e-18  Score=123.27  Aligned_cols=112  Identities=21%  Similarity=0.328  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee-eecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC-CYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~g~~~~~~~~~~----   76 (154)
                      +++.++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||++.......... ....++..+++||.+    
T Consensus       105 ~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  181 (263)
T cd05052         105 VLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK  181 (263)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCC
Confidence            35778999999999999   5569999999999999999999999999887653311000 000001111222111    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ....+..++..+.+++.+||+.+|++||++.++++.|+.
T Consensus       182 ~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~  261 (263)
T cd05052         182 FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFET  261 (263)
T ss_pred             CCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHh
Confidence                                                     112344567889999999999999999999999999987


Q ss_pred             H
Q 044888          116 A  116 (154)
Q Consensus       116 ~  116 (154)
                      +
T Consensus       262 ~  262 (263)
T cd05052         262 M  262 (263)
T ss_pred             h
Confidence            5

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.76  E-value=3.4e-18  Score=125.20  Aligned_cols=112  Identities=21%  Similarity=0.357  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~----   76 (154)
                      .++++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||+++.........  ....+...+++||.+    
T Consensus       134 ~~~i~~qi~~al~~LH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  210 (293)
T cd05053         134 LVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRV  210 (293)
T ss_pred             HHHHHHHHHHHHHHHH---HCCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCC
Confidence            4678999999999999   5569999999999999999999999999887543210000  000011112222211    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ....+..++..+.+++.+||+.+|++|||+.++++.|+.
T Consensus       211 ~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~  290 (293)
T cd05053         211 YTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDR  290 (293)
T ss_pred             cCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHH
Confidence                                                     012234556789999999999999999999999999998


Q ss_pred             HH
Q 044888          116 AW  117 (154)
Q Consensus       116 ~~  117 (154)
                      +.
T Consensus       291 ~~  292 (293)
T cd05053         291 ML  292 (293)
T ss_pred             hh
Confidence            75

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.76  E-value=3.6e-18  Score=124.34  Aligned_cols=116  Identities=22%  Similarity=0.274  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee--ecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC--YQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~--~~~g~~~~~~~~~~---   76 (154)
                      ..+.++.|++.||.|||   +.+++|+||+|.||+++.++.+||+|||+++..........  ...++..++.||.+   
T Consensus       110 ~~~~~~~qi~~~L~~lH---~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  186 (279)
T cd05109         110 DLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHR  186 (279)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccC
Confidence            45788999999999999   55699999999999999999999999999875532110000  00001111111111   


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ....+..++.++.+++.+||+.||++||++.+++..|+
T Consensus       187 ~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~  266 (279)
T cd05109         187 RFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFS  266 (279)
T ss_pred             CCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                                                      01223346678899999999999999999999999988


Q ss_pred             HHHHhc
Q 044888          115 LAWRQQ  120 (154)
Q Consensus       115 ~~~~~~  120 (154)
                      .+....
T Consensus       267 ~~~~~~  272 (279)
T cd05109         267 RMARDP  272 (279)
T ss_pred             HhhcCC
Confidence            775544

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.76  E-value=1.4e-18  Score=132.98  Aligned_cols=104  Identities=30%  Similarity=0.343  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-------------eeeeccccccccc
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-------------LCCYQSGTLGLVV   72 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-------------~~~~~~g~~~~~~   72 (154)
                      ++.+|..||+|||   +.|||||||||.|||++.+++++|+|||.++.+.+...             ....+.|+..|+.
T Consensus       179 YAAeIldAleylH---~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVS  255 (604)
T KOG0592|consen  179 YAAEILDALEYLH---SNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVS  255 (604)
T ss_pred             HHHHHHHHHHHHH---hcCceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccC
Confidence            6889999999999   67799999999999999999999999999999865311             1245789999999


Q ss_pred             CccccC-------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           73 DPFLRG-------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        73 ~~~~~~-------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                      ||.+..                                           .+++..+..+.+|+.+-+..||.+|.+..+|
T Consensus       256 PElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qI  335 (604)
T KOG0592|consen  256 PELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQI  335 (604)
T ss_pred             HHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHccCccccccHHHH
Confidence            988854                                           5677888999999999999999999999988


Q ss_pred             HHH
Q 044888          110 LCN  112 (154)
Q Consensus       110 ~~~  112 (154)
                      -+.
T Consensus       336 k~H  338 (604)
T KOG0592|consen  336 KAH  338 (604)
T ss_pred             hhC
Confidence            654

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.76  E-value=6.1e-18  Score=123.36  Aligned_cols=115  Identities=19%  Similarity=0.290  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-e-eeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-L-CCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~-~~~~~g~~~~~~~~~~~--   77 (154)
                      ..+.++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||.++....... . .....++..++.||.+.  
T Consensus       110 ~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~  186 (279)
T cd05111         110 RLLNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFG  186 (279)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccC
Confidence            35678999999999999   55699999999999999999999999999875432100 0 00001111222222110  


Q ss_pred             ---------------------C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 ---------------------G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 ---------------------~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                           +                      ..+..++..+.+++.+||..+|++||++.|++..|.
T Consensus       187 ~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~  266 (279)
T cd05111         187 RYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKELANEFT  266 (279)
T ss_pred             CcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence                                 0                      112235667889999999999999999999999998


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      .+.+.
T Consensus       267 ~~~~~  271 (279)
T cd05111         267 RMARD  271 (279)
T ss_pred             HHHhC
Confidence            87753

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.76  E-value=5.4e-18  Score=124.25  Aligned_cols=115  Identities=19%  Similarity=0.200  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-   78 (154)
                      ++++++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++.........  .....++..+++||.+.+ 
T Consensus       124 ~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  200 (291)
T cd05094         124 QMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYR  200 (291)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccC
Confidence            46789999999999999   556999999999999999999999999998654321000  000011122222221110 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ..+..++..+.+++.+||+.+|++||++.+|++.|+
T Consensus       201 ~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~  280 (291)
T cd05094         201 KFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILH  280 (291)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHH
Confidence                                                        122345778999999999999999999999999999


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      .+...
T Consensus       281 ~~~~~  285 (291)
T cd05094         281 ALGKA  285 (291)
T ss_pred             HHHhh
Confidence            98764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.76  E-value=1.1e-17  Score=124.93  Aligned_cols=117  Identities=23%  Similarity=0.321  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeee--cccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCY--QSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~--~~g~~~~~~~~~~----   76 (154)
                      +++++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||+++...........  ..+...+++||.+    
T Consensus       136 ~~~~~~qi~~al~~LH---~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  212 (334)
T cd05100         136 LVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRV  212 (334)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCC
Confidence            4678999999999999   566999999999999999999999999988654321000000  0001112222211    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ....+..++..+.+++.+||+.+|++||++.+++..|+.
T Consensus       213 ~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~  292 (334)
T cd05100         213 YTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDR  292 (334)
T ss_pred             cCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHH
Confidence                                                     012234557789999999999999999999999999999


Q ss_pred             HHHhcCC
Q 044888          116 AWRQQGA  122 (154)
Q Consensus       116 ~~~~~~~  122 (154)
                      +......
T Consensus       293 ~~~~~~~  299 (334)
T cd05100         293 VLTVTST  299 (334)
T ss_pred             HhhhcCC
Confidence            9865544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.75  E-value=3.6e-18  Score=124.23  Aligned_cols=109  Identities=17%  Similarity=0.273  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee--ecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC--YQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~--~~~g~~~~~~~~~~~---   77 (154)
                      .+.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++...........  ...++..+++||.+.   
T Consensus       121 ~~~~~~~l~~~l~~lH---~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  197 (277)
T cd05062         121 MIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV  197 (277)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCC
Confidence            4678899999999999   55699999999999999999999999998865432111000  001112222222211   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ...+..++..+.+++.+||+.+|++||++.|+++.|+
T Consensus       198 ~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         198 FTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             cCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence                                                      0223446778999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.75  E-value=4.1e-18  Score=122.69  Aligned_cols=111  Identities=26%  Similarity=0.347  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcc------
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPF------   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~------   75 (154)
                      +.++++.|++.||.|||   ..+++|+|+++.||+++.++.+|++|||.+..............++..++.||.      
T Consensus       105 ~~~~~~~~i~~al~~lH---~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~  181 (261)
T cd05148         105 SLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTF  181 (261)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCC
Confidence            35678999999999999   556999999999999999999999999988654321100000000111111110      


Q ss_pred             ---------------------------------------ccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           76 ---------------------------------------LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        76 ---------------------------------------~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                             .....+..++..+.+++.+||+.+|++||++.++++.|+.
T Consensus       182 ~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         182 STKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDN  260 (261)
T ss_pred             CchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence                                                   1112334567889999999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.75  E-value=8.7e-18  Score=122.97  Aligned_cols=116  Identities=19%  Similarity=0.203  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-   78 (154)
                      +.++++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||++.........  .....++..+++||.+.+ 
T Consensus       121 ~~~~~~~ql~~aL~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  197 (288)
T cd05093         121 QMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYR  197 (288)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccC
Confidence            35778999999999999   566999999999999999999999999998654221100  000011122222222211 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ..+...+.++.+|+.+||+.+|.+||++.+|...|+
T Consensus       198 ~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~  277 (288)
T cd05093         198 KFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQ  277 (288)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHH
Confidence                                                        112345678999999999999999999999999999


Q ss_pred             HHHHhc
Q 044888          115 LAWRQQ  120 (154)
Q Consensus       115 ~~~~~~  120 (154)
                      .+....
T Consensus       278 ~~~~~~  283 (288)
T cd05093         278 NLAKAS  283 (288)
T ss_pred             HHHHhc
Confidence            988654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.75  E-value=7.3e-18  Score=121.84  Aligned_cols=112  Identities=22%  Similarity=0.321  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~---   76 (154)
                      +.++++.|++.||.|||   +.+++|+|++|.||+++.++.++++|||++.........  .....++..+++|+.+   
T Consensus       107 ~~~~~~~~l~~~l~~Lh---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~  183 (266)
T cd05033         107 QLVGMLRGIASGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYR  183 (266)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccC
Confidence            35778999999999999   566999999999999999999999999988765311000  0000001111111111   


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ..+.+..++..+.+++.+||+.+|++||++.+|++.|+
T Consensus       184 ~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~  263 (266)
T cd05033         184 KFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLD  263 (266)
T ss_pred             CCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence                                                      11223456789999999999999999999999999998


Q ss_pred             HH
Q 044888          115 LA  116 (154)
Q Consensus       115 ~~  116 (154)
                      ++
T Consensus       264 ~~  265 (266)
T cd05033         264 KM  265 (266)
T ss_pred             hh
Confidence            75

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.75  E-value=8.1e-18  Score=121.21  Aligned_cols=113  Identities=19%  Similarity=0.290  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc----eeeecccccccccCcccc-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT----LCCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~g~~~~~~~~~~~-   77 (154)
                      .+.++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||++........    ......++..+++||.+. 
T Consensus       100 ~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  176 (262)
T cd05058         100 LIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQT  176 (262)
T ss_pred             HHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhcc
Confidence            4678899999999999   55699999999999999999999999998864422100    000001111222222111 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+...+..+.+++..||+.+|++||++.+|+..|
T Consensus       177 ~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l  256 (262)
T cd05058         177 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRI  256 (262)
T ss_pred             CccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence                                                        011223467899999999999999999999999999


Q ss_pred             HHHHH
Q 044888          114 GLAWR  118 (154)
Q Consensus       114 ~~~~~  118 (154)
                      +.+..
T Consensus       257 ~~~~~  261 (262)
T cd05058         257 EQIFS  261 (262)
T ss_pred             HHHhc
Confidence            98753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.75  E-value=4.5e-18  Score=122.83  Aligned_cols=111  Identities=18%  Similarity=0.246  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      .+.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++..............++..+++||.+.+    
T Consensus       108 ~~~~~~~i~~~l~~LH---~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~  184 (267)
T cd08228         108 VWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYN  184 (267)
T ss_pred             HHHHHHHHHHHHHHHh---hCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccCCCC
Confidence            4678999999999999   556999999999999999999999999987664321110001112222222222110    


Q ss_pred             ---------------------------------------CC----CcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 ---------------------------------------KI----DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 ---------------------------------------~~----~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                             ..    ....+..+.+++.+||+.+|++||++.+|++.|++
T Consensus       185 ~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~  264 (267)
T cd08228         185 FKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQ  264 (267)
T ss_pred             chhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHH
Confidence                                                   01    11345679999999999999999999999999987


Q ss_pred             H
Q 044888          116 A  116 (154)
Q Consensus       116 ~  116 (154)
                      +
T Consensus       265 ~  265 (267)
T cd08228         265 M  265 (267)
T ss_pred             h
Confidence            5

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.75  E-value=8.8e-18  Score=121.15  Aligned_cols=112  Identities=22%  Similarity=0.272  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee---ecccccccccCccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC---YQSGTLGLVVDPFL--   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~---~~~g~~~~~~~~~~--   76 (154)
                      +.++++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||++...........   ...++..+++||.+  
T Consensus        96 ~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  172 (257)
T cd05115          96 NVVELMHQVSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINF  172 (257)
T ss_pred             HHHHHHHHHHHHHHHHH---hcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHcc
Confidence            45788999999999999   55699999999999999999999999999865432111000   00001112222111  


Q ss_pred             -------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 -------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 -------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                 ....+..++.++.+++.+||+.+|++||++.+|.+.|
T Consensus       173 ~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l  252 (257)
T cd05115         173 RKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERM  252 (257)
T ss_pred             CCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                                                       1122345678899999999999999999999999998


Q ss_pred             HHH
Q 044888          114 GLA  116 (154)
Q Consensus       114 ~~~  116 (154)
                      +.+
T Consensus       253 ~~~  255 (257)
T cd05115         253 RTY  255 (257)
T ss_pred             hhh
Confidence            864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.75  E-value=7e-18  Score=135.06  Aligned_cols=113  Identities=25%  Similarity=0.351  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee-eeccc--ccccccCccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC-CYQSG--TLGLVVDPFL---   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~g--~~~~~~~~~~---   76 (154)
                      -+.++.|||.|++||++   .+++||||...|||+..+..+|++|||+++......... ....+  .+.+|++|.+   
T Consensus       420 Llsfa~QIa~GMe~L~~---~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~  496 (609)
T KOG0200|consen  420 LLSFAYQIANGMEYLAS---VPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDR  496 (609)
T ss_pred             HHHHHHHHHHHHHHHhh---CCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccC
Confidence            47899999999999994   559999999999999999999999999998543311000 00000  1123333322   


Q ss_pred             -------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 -------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 -------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                 +...|..|..++++||..||+.+|++||+|.++++.+
T Consensus       497 ~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~  576 (609)
T KOG0200|consen  497 VFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFF  576 (609)
T ss_pred             cccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHH
Confidence                                                       2356778899999999999999999999999999999


Q ss_pred             HHHHH
Q 044888          114 GLAWR  118 (154)
Q Consensus       114 ~~~~~  118 (154)
                      +..+.
T Consensus       577 ~~~l~  581 (609)
T KOG0200|consen  577 EKHLQ  581 (609)
T ss_pred             HHHHH
Confidence            99644

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.74  E-value=8.5e-18  Score=124.13  Aligned_cols=116  Identities=22%  Similarity=0.294  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~---   76 (154)
                      ++++++.|++.||+|||   ..+++|+|++|.||+++.++.++++|||.+..........  ....+...+++||.+   
T Consensus       141 ~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  217 (307)
T cd05098         141 DLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDR  217 (307)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccC
Confidence            35678999999999999   5669999999999999999999999999886543210000  000011122222211   


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ....+..++.++.+++..||+.+|++||++.+|++.|+
T Consensus       218 ~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~  297 (307)
T cd05098         218 IYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD  297 (307)
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHH
Confidence                                                      11233456788999999999999999999999999999


Q ss_pred             HHHHhc
Q 044888          115 LAWRQQ  120 (154)
Q Consensus       115 ~~~~~~  120 (154)
                      .+....
T Consensus       298 ~~~~~~  303 (307)
T cd05098         298 RILALT  303 (307)
T ss_pred             HHHHHh
Confidence            988753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.74  E-value=5.3e-18  Score=127.64  Aligned_cols=107  Identities=21%  Similarity=0.384  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.+||+|||++..............|+..|+++|.+..    
T Consensus       170 ~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  246 (353)
T PLN00034        170 LADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNH  246 (353)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccCcccccccccc
Confidence            3578999999999999   556999999999999999999999999998765432221222345555665554310    


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                      ..+...+.++.+++..||+.||++||++.||+
T Consensus       247 ~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell  326 (353)
T PLN00034        247 GAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLL  326 (353)
T ss_pred             CcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence                                                            01223456889999999999999999999998


Q ss_pred             HH
Q 044888          111 CN  112 (154)
Q Consensus       111 ~~  112 (154)
                      +.
T Consensus       327 ~h  328 (353)
T PLN00034        327 QH  328 (353)
T ss_pred             cC
Confidence            63

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.74  E-value=6.8e-18  Score=121.40  Aligned_cols=109  Identities=27%  Similarity=0.386  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      ..++++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||++........   ...+...+++||.+     
T Consensus       103 ~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~y~aPE~~~~~~~  176 (256)
T cd05082         103 CLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---TGKLPVKWTAPEALREKKF  176 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEeccccchheEEEcCCCcEEecCCccceeccccCC---CCccceeecCHHHHccCCC
Confidence            35788999999999999   55699999999999999999999999998875432100   00000111111110     


Q ss_pred             ----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 044888           77 ----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        77 ----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~  116 (154)
                                                              ....+..++..+.+++.+||+.+|++||++.++++.|+.+
T Consensus       177 ~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         177 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             CchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence                                                    1112234567899999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.74  E-value=1.1e-17  Score=122.44  Aligned_cols=113  Identities=19%  Similarity=0.278  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPF-----   75 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~-----   75 (154)
                      .+.++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||+++........  .....++..+++|+.     
T Consensus       129 ~~~i~~~i~~~l~~LH---~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~  205 (290)
T cd05045         129 LISFAWQISRGMQYLA---EMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHI  205 (290)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCC
Confidence            4688999999999999   566999999999999999999999999998653211000  000000111111111     


Q ss_pred             ----------------------------------------ccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           76 ----------------------------------------LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        76 ----------------------------------------~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                              .....+..++.++.+++..||+.+|++||++.++++.|++
T Consensus       206 ~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~  285 (290)
T cd05045         206 YTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEK  285 (290)
T ss_pred             cchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence                                                    1112234567789999999999999999999999999998


Q ss_pred             HHH
Q 044888          116 AWR  118 (154)
Q Consensus       116 ~~~  118 (154)
                      +..
T Consensus       286 ~~~  288 (290)
T cd05045         286 MMV  288 (290)
T ss_pred             HHh
Confidence            764

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=5.1e-18  Score=127.43  Aligned_cols=104  Identities=29%  Similarity=0.352  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee----eecccccccccCccccC--
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC----CYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~--   78 (154)
                      .|..++..||.|||   ..|-+|||+|+.|||++.+|.+||+|||++..+.......    ....|++.+|+||.+..  
T Consensus       130 ~iLre~LkaL~YLH---~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~  206 (516)
T KOG0582|consen  130 TILREVLKALDYLH---QNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQL  206 (516)
T ss_pred             HHHHHHHHHHHHHH---hcCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcc
Confidence            35688999999999   6779999999999999999999999999987765543333    34478999999988321  


Q ss_pred             ---------------------------CC--------------------------CcchHHHHHHHHHHhhccCCCCCCC
Q 044888           79 ---------------------------KI--------------------------DPGCFKTFTDIAKKCLADRGCDRPQ  105 (154)
Q Consensus        79 ---------------------------~~--------------------------~~~~~~~~~~l~~~C~~~~p~~RP~  105 (154)
                                                 .+                          .......+.+++..|++.||.+|||
T Consensus       207 ~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRpt  286 (516)
T KOG0582|consen  207 HGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPT  286 (516)
T ss_pred             cCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCC
Confidence                                       00                          0123557889999999999999999


Q ss_pred             HHHHHH
Q 044888          106 MGDVLC  111 (154)
Q Consensus       106 ~~~v~~  111 (154)
                      +.++++
T Consensus       287 AskLlk  292 (516)
T KOG0582|consen  287 ASKLLK  292 (516)
T ss_pred             HHHHhc
Confidence            999963

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.74  E-value=1.2e-17  Score=120.80  Aligned_cols=111  Identities=24%  Similarity=0.278  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~----   76 (154)
                      ...++.|++.||.|||   ..+++|+|++|.||+++.++.+|++|||+++......+..  .....+..+++++.+    
T Consensus       115 ~~~~~~~i~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~  191 (273)
T cd05035         115 LLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRV  191 (273)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCC
Confidence            4668999999999999   5569999999999999999999999999987643211100  000001111111111    


Q ss_pred             ------------------c-----------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 ------------------R-----------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 ------------------~-----------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                        .                       ...+..++..+.+++.+||+.||++||++.+|++.|++
T Consensus       192 ~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~  271 (273)
T cd05035         192 YTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLEN  271 (273)
T ss_pred             CCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence                              0                       12234567889999999999999999999999999987


Q ss_pred             H
Q 044888          116 A  116 (154)
Q Consensus       116 ~  116 (154)
                      +
T Consensus       272 ~  272 (273)
T cd05035         272 I  272 (273)
T ss_pred             h
Confidence            5

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.74  E-value=1.5e-17  Score=124.77  Aligned_cols=114  Identities=23%  Similarity=0.260  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~---   76 (154)
                      +.++++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||++........  ......++..+++||.+   
T Consensus       180 ~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  256 (343)
T cd05103         180 DLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR  256 (343)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCC
Confidence            35678999999999999   56699999999999999999999999998865421100  00000011112222211   


Q ss_pred             -------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 -------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 -------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                 ....+...+.++.+++..||+.+|++||++.+|++.|
T Consensus       257 ~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l  336 (343)
T cd05103         257 VYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  336 (343)
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence                                                       0011222456789999999999999999999999999


Q ss_pred             HHHHH
Q 044888          114 GLAWR  118 (154)
Q Consensus       114 ~~~~~  118 (154)
                      +.+.+
T Consensus       337 ~~~~~  341 (343)
T cd05103         337 GNLLQ  341 (343)
T ss_pred             HHHHh
Confidence            98875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.74  E-value=1.7e-17  Score=122.99  Aligned_cols=114  Identities=21%  Similarity=0.291  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee--ecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC--YQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~--~~~g~~~~~~~~~~~---   77 (154)
                      .++++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||+++..........  ...+...+++||.+.   
T Consensus       136 ~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  212 (314)
T cd05099         136 LVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRV  212 (314)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCC
Confidence            4678999999999999   56699999999999999999999999999875432100000  000011122222110   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++.++.+++.+||+.+|++||++.++++.|++
T Consensus       213 ~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~  292 (314)
T cd05099         213 YTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDK  292 (314)
T ss_pred             cCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHH
Confidence                                                      12234556789999999999999999999999999998


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +...
T Consensus       293 ~~~~  296 (314)
T cd05099         293 VLAA  296 (314)
T ss_pred             HHHH
Confidence            8764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.74  E-value=1.7e-17  Score=121.99  Aligned_cols=114  Identities=22%  Similarity=0.407  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCc--------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDP--------   74 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~--------   74 (154)
                      .++++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||++......... ........+++||        
T Consensus       121 ~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~  196 (297)
T cd05089         121 LLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKK-TMGRLPVRWMAIESLNYSVYT  196 (297)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCCCeEEECCcCCCccccceecc-CCCCcCccccCchhhccCCCC
Confidence            4678999999999999   566999999999999999999999999987532211000 0000000111111        


Q ss_pred             --------------cc-----------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 044888           75 --------------FL-----------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus        75 --------------~~-----------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~  117 (154)
                                    .+                       ....+..++..+.+|+.+||+.+|.+||++.+|+..|+.+.
T Consensus       197 ~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~  276 (297)
T cd05089         197 TKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRML  276 (297)
T ss_pred             chhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                          11                       11223356788999999999999999999999999999888


Q ss_pred             Hhc
Q 044888          118 RQQ  120 (154)
Q Consensus       118 ~~~  120 (154)
                      ...
T Consensus       277 ~~~  279 (297)
T cd05089         277 EAR  279 (297)
T ss_pred             Hhh
Confidence            654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.74  E-value=1.4e-17  Score=121.51  Aligned_cols=113  Identities=24%  Similarity=0.294  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee---eecccccccccCccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC---CYQSGTLGLVVDPFL--   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~~~~g~~~~~~~~~~--   76 (154)
                      ++..++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++..........   ....+...++.||.+  
T Consensus       108 ~~~~i~~~l~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~  184 (283)
T cd05080         108 QLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKE  184 (283)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcc
Confidence            46788999999999999   5569999999999999999999999999986543210000   000000001111100  


Q ss_pred             ---------------------------------------------------------cCCCCcchHHHHHHHHHHhhccC
Q 044888           77 ---------------------------------------------------------RGKIDPGCFKTFTDIAKKCLADR   99 (154)
Q Consensus        77 ---------------------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~   99 (154)
                                                                               ..+.+..++..+.+++..||+.+
T Consensus       185 ~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  264 (283)
T cd05080         185 NKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETE  264 (283)
T ss_pred             cCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccC
Confidence                                                                     01123345689999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 044888          100 GCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus       100 p~~RP~~~~v~~~L~~~~  117 (154)
                      |++||++.+|+..|+.+.
T Consensus       265 p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         265 AKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hhhCCCHHHHHHHHHHhh
Confidence            999999999999998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1.9e-18  Score=134.75  Aligned_cols=115  Identities=22%  Similarity=0.372  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC-cce----------------------
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM-LTL----------------------   60 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~-~~~----------------------   60 (154)
                      +.+|.||++|++||.   .+.+|||||...|+|+..+..+|++|||+++++..+ .|.                      
T Consensus       368 lyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFS  444 (1157)
T KOG4278|consen  368 LYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFS  444 (1157)
T ss_pred             HHHHHHHHHHHHHHH---HhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccc
Confidence            578999999999999   455999999999999999999999999999998654 110                      


Q ss_pred             ---eeeccc--------------------ccccccCccccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 044888           61 ---CCYQSG--------------------TLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus        61 ---~~~~~g--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~  117 (154)
                         ..+..|                    ..+.++...++.+.|..|+..+++||..||+.+|.+||+|.|+.+.++.+.
T Consensus       445 iKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf  524 (1157)
T KOG4278|consen  445 IKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMF  524 (1157)
T ss_pred             cchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHh
Confidence               000001                    111223334445678899999999999999999999999999999999876


Q ss_pred             HhcC
Q 044888          118 RQQG  121 (154)
Q Consensus       118 ~~~~  121 (154)
                      ....
T Consensus       525 ~~sS  528 (1157)
T KOG4278|consen  525 SSSS  528 (1157)
T ss_pred             cccc
Confidence            5443

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.74  E-value=8.4e-18  Score=123.64  Aligned_cols=108  Identities=19%  Similarity=0.093  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-------ceeeecccccccccCcc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-------TLCCYQSGTLGLVVDPF   75 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-------~~~~~~~g~~~~~~~~~   75 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.++++|||+++......       .......|+..+++++.
T Consensus       128 ~~~i~~qi~~~l~~lH---~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~  204 (294)
T PHA02882        128 IKNIMKDMLTTLEYIH---EHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDA  204 (294)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHH
Confidence            3568999999999999   5569999999999999999999999999987543210       00111234444444333


Q ss_pred             ccC---------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC
Q 044888           76 LRG---------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP  104 (154)
Q Consensus        76 ~~~---------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP  104 (154)
                      ..+                                                   .....++..+.+++..||+.+|++||
T Consensus       205 ~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp  284 (294)
T PHA02882        205 HNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKFIYDFIECVTKLSYEEKP  284 (294)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCHHHHHHHHHHHhCCCCCCC
Confidence            221                                                   01234567889999999999999999


Q ss_pred             CHHHHHHHH
Q 044888          105 QMGDVLCNL  113 (154)
Q Consensus       105 ~~~~v~~~L  113 (154)
                      ++.++.+.|
T Consensus       285 ~~~~l~~~~  293 (294)
T PHA02882        285 DYDALIKIF  293 (294)
T ss_pred             CHHHHHHhh
Confidence            999998865

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.74  E-value=3.9e-17  Score=130.38  Aligned_cols=122  Identities=20%  Similarity=0.136  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---------eeeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---------LCCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---------~~~~~~g~~~~~~   72 (154)
                      .-|+|+.|+++|+.+||.. .+++||||||.+|+|++.++..||||||-+.......+         .......++.|-+
T Consensus       145 eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRs  223 (738)
T KOG1989|consen  145 EVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRS  223 (738)
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccC
Confidence            3589999999999999976 58899999999999999999999999998755433211         0001111122222


Q ss_pred             Cccc--------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           73 DPFL--------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        73 ~~~~--------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                      ||.+                                            .-+..+..+..+.+|+..||+.+|++||++.+
T Consensus       224 PEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Q  303 (738)
T KOG1989|consen  224 PEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQ  303 (738)
T ss_pred             hHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHH
Confidence            2221                                            11233578999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCc
Q 044888          109 VLCNLGLAWRQQGAVD  124 (154)
Q Consensus       109 v~~~L~~~~~~~~~~~  124 (154)
                      |+..+-++.....+..
T Consensus       304 v~~~~~~l~~~~~~~~  319 (738)
T KOG1989|consen  304 VLEEIFELANKPCPIP  319 (738)
T ss_pred             HHHHHHHHhcCCCCcc
Confidence            9999999887666654

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=4.6e-18  Score=127.23  Aligned_cols=103  Identities=28%  Similarity=0.387  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-------   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------   78 (154)
                      +..++..||.|||+..   .+|||+|+.||++..++.+|++|||++..+.........+.|++.+|+||.+.+       
T Consensus       116 ilre~l~~l~ylH~~~---kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KA  192 (467)
T KOG0201|consen  116 ILREVLKGLDYLHSEK---KIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKA  192 (467)
T ss_pred             ehHHHHHHhhhhhhcc---eecccccccceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccchh
Confidence            4678899999999554   999999999999999999999999999988876666678899999999998865       


Q ss_pred             -------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                           .....++..+.+++..|+++||+.||++.++++
T Consensus       193 DIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  193 DIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             hhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence                                                 011246778999999999999999999999864

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=8.3e-18  Score=127.29  Aligned_cols=103  Identities=28%  Similarity=0.319  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      +++.|+++|+.|+|   ..+|+|||||+.|++++.+ +.+||+|||++..............|+..|++||.+.+     
T Consensus       124 ~~F~Qlisav~y~H---~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~  200 (370)
T KOG0583|consen  124 KYFRQLISAVAYCH---SRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYS  200 (370)
T ss_pred             HHHHHHHHHHHHHH---hCCEeeCCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcC
Confidence            57899999999999   5669999999999999999 99999999999987422334456788999999888765     


Q ss_pred             ----------------------------------------CCCcch-HHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ----------------------------------------KIDPGC-FKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ----------------------------------------~~~~~~-~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                              .+|... +.++..++.+|++.+|.+|+++.+|+
T Consensus       201 g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~  273 (370)
T KOG0583|consen  201 GKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEIL  273 (370)
T ss_pred             CchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence                                                    233445 88899999999999999999999998

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.74  E-value=1.3e-17  Score=120.69  Aligned_cols=112  Identities=14%  Similarity=0.233  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPF-----   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~-----   75 (154)
                      +.+.++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||.+........ ......++..+++||.     
T Consensus       108 ~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  184 (266)
T cd05064         108 QLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHH  184 (266)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCC
Confidence            45788999999999999   55699999999999999999999999997654321100 0000000011111111     


Q ss_pred             ----------------------------------------ccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           76 ----------------------------------------LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        76 ----------------------------------------~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                              ...+.+..++..+.+++..||+.+|++||++.+|.+.|++
T Consensus       185 ~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~  264 (266)
T cd05064         185 FSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSK  264 (266)
T ss_pred             ccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHh
Confidence                                                    1113345678899999999999999999999999998876


Q ss_pred             H
Q 044888          116 A  116 (154)
Q Consensus       116 ~  116 (154)
                      +
T Consensus       265 ~  265 (266)
T cd05064         265 M  265 (266)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.73  E-value=1.5e-17  Score=120.04  Aligned_cols=112  Identities=18%  Similarity=0.216  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +.+.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++..............++..+++||.+.+   
T Consensus       107 ~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~  183 (267)
T cd08229         107 TVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGY  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCc
Confidence            35678999999999999   566999999999999999999999999987654321111111122222222222110   


Q ss_pred             ----------------------------------------C----CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 ----------------------------------------K----IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 ----------------------------------------~----~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                              .    .+...+..+.+++.+||+.+|++||+|.+|++.++
T Consensus       184 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~  263 (267)
T cd08229         184 NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAK  263 (267)
T ss_pred             cchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHh
Confidence                                                    0    11235678999999999999999999999999988


Q ss_pred             HH
Q 044888          115 LA  116 (154)
Q Consensus       115 ~~  116 (154)
                      ++
T Consensus       264 ~~  265 (267)
T cd08229         264 RM  265 (267)
T ss_pred             hh
Confidence            65

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.73  E-value=1.7e-17  Score=121.04  Aligned_cols=112  Identities=23%  Similarity=0.343  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee---ecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC---YQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~---~~~g~~~~~~~~~~~-   77 (154)
                      +++.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++...........   ...+...+++||.+. 
T Consensus       109 ~~~~~~~~l~~aL~~LH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  185 (284)
T cd05081         109 KLLLYASQICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTE  185 (284)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhcc
Confidence            45678999999999999   55699999999999999999999999999876532111000   000000111111110 


Q ss_pred             -----------------------------------------------------------CCCCcchHHHHHHHHHHhhcc
Q 044888           78 -----------------------------------------------------------GKIDPGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        78 -----------------------------------------------------------~~~~~~~~~~~~~l~~~C~~~   98 (154)
                                                                                 .+.+..++.++.+++.+||+.
T Consensus       186 ~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  265 (284)
T cd05081         186 SKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNN  265 (284)
T ss_pred             CCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccC
Confidence                                                                       011234567899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q 044888           99 RGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~  116 (154)
                      +|++|||+.+|+..|+.+
T Consensus       266 ~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         266 DPSQRPSFSELALQVEAI  283 (284)
T ss_pred             ChhhCCCHHHHHHHHHhc
Confidence            999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.73  E-value=1.2e-17  Score=127.83  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~---   77 (154)
                      .++++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||+++.......  ......++..+++||.+.   
T Consensus       239 ~~~~~~qi~~aL~~LH---~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  315 (400)
T cd05105         239 LLSFTYQVARGMEFLA---SKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNL  315 (400)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCC
Confidence            5678999999999999   55699999999999999999999999999865432110  000011112222222211   


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++..+.+++.+||+.+|++||++.+|++.|+
T Consensus       316 ~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~  395 (400)
T cd05105         316 YTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVE  395 (400)
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHH
Confidence                                                       1123345678999999999999999999999999999


Q ss_pred             HHHH
Q 044888          115 LAWR  118 (154)
Q Consensus       115 ~~~~  118 (154)
                      .+.+
T Consensus       396 ~l~~  399 (400)
T cd05105         396 SLLP  399 (400)
T ss_pred             HHcC
Confidence            7653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.73  E-value=1.9e-17  Score=121.56  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~~--   77 (154)
                      ++++++.|++.||.|||   ..+++|+|++|.|++++.++.+|++|||++..........  ....++..+++||.+.  
T Consensus       130 ~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  206 (295)
T cd05097         130 NLLYMAVQIASGMKYLA---SLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLG  206 (295)
T ss_pred             HHHHHHHHHHHHHHHHH---hcCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccC
Confidence            35678999999999999   5669999999999999999999999999886542210000  0000111122222110  


Q ss_pred             ---------------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           78 ---------------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        78 ---------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                                         ...++..+..+.+|+.+||+.+|++||++
T Consensus       207 ~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~  286 (295)
T cd05097         207 KFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTF  286 (295)
T ss_pred             CcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCH
Confidence                                                               11123456789999999999999999999


Q ss_pred             HHHHHHHH
Q 044888          107 GDVLCNLG  114 (154)
Q Consensus       107 ~~v~~~L~  114 (154)
                      .+|++.|+
T Consensus       287 ~~i~~~l~  294 (295)
T cd05097         287 NKIHHFLR  294 (295)
T ss_pred             HHHHHHHh
Confidence            99999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.73  E-value=1.5e-17  Score=119.86  Aligned_cols=111  Identities=23%  Similarity=0.359  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce-eeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL-CCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~g~~~~~~~~~~~---   77 (154)
                      +++.++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||.+......... .....++..+++||.+.   
T Consensus       104 ~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  180 (261)
T cd05072         104 KLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS  180 (261)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCC
Confidence            35678999999999999   456999999999999999999999999998765421100 00001111122222110   


Q ss_pred             --------------------C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 --------------------G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 --------------------~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                          +                      +.....+.++.+++.+||+.+|++||++.++.+.|+.
T Consensus       181 ~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         181 FTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             CChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                                0                      1123456789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.73  E-value=1.9e-17  Score=119.81  Aligned_cols=106  Identities=20%  Similarity=0.348  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc-------EEEecCCCcccCCCCcceeeecccccccccCc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV-------AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDP   74 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~-------~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~   74 (154)
                      ++++++.|++.||.|||   +.+++|+||+|.||+++.++.       ++++|||++.......    ...++..+++||
T Consensus       106 ~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~----~~~~~~~y~aPE  178 (262)
T cd05077         106 WKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQ----ECVERIPWIAPE  178 (262)
T ss_pred             HHHHHHHHHHHHHHHhh---hCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCcc----cccccccccChh
Confidence            45789999999999999   566999999999999986553       8999999876542210    011222222222


Q ss_pred             cccC--------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           75 FLRG--------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        75 ~~~~--------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                      .+..                                            ........++.+|+.+||+.||++||++.+|+
T Consensus       179 ~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il  258 (262)
T cd05077         179 CVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERFYEGQCMLVTPSCKELADLMTHCMNYDPNQRPFFRAIM  258 (262)
T ss_pred             hhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHhcCccCCCCChHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            2210                                            01112357789999999999999999999998


Q ss_pred             HHHH
Q 044888          111 CNLG  114 (154)
Q Consensus       111 ~~L~  114 (154)
                      ..++
T Consensus       259 ~~~~  262 (262)
T cd05077         259 RDIN  262 (262)
T ss_pred             HhcC
Confidence            8763

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.73  E-value=1.7e-17  Score=119.36  Aligned_cols=113  Identities=20%  Similarity=0.234  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee---ecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC---YQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~---~~~g~~~~~~~~~~~-   77 (154)
                      .++.++.|++.||.|||   ..+++|+||++.|++++.++.++++|||+++..........   ...++..+++||.+. 
T Consensus        96 ~~~~~~~qi~~~l~~lh---~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  172 (257)
T cd05060          96 DLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINY  172 (257)
T ss_pred             HHHHHHHHHHHHHHHHh---hcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcC
Confidence            46789999999999999   45599999999999999999999999998875532211000   000011122222110 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+..++..+.+++.+||+.+|++||++.+|++.|
T Consensus       173 ~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l  252 (257)
T cd05060         173 GKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTF  252 (257)
T ss_pred             CCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence                                                        022334667899999999999999999999999999


Q ss_pred             HHHH
Q 044888          114 GLAW  117 (154)
Q Consensus       114 ~~~~  117 (154)
                      +++.
T Consensus       253 ~~~~  256 (257)
T cd05060         253 RRDP  256 (257)
T ss_pred             Hhcc
Confidence            8763

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.73  E-value=2.5e-17  Score=119.89  Aligned_cols=114  Identities=21%  Similarity=0.264  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~---   76 (154)
                      +++.++.|++.||.|||   +.+++|+|++|.|++++.++.+|++|||+++.+.......  ....+...+++||.+   
T Consensus       118 ~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~  194 (280)
T cd05043         118 QLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNK  194 (280)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcC
Confidence            35778999999999999   5669999999999999999999999999987542210000  000011111111111   


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ....+..++..+.+++.+||+.+|++||++.+|+..|+
T Consensus       195 ~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  274 (280)
T cd05043         195 EYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQCLT  274 (280)
T ss_pred             CCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence                                                      01122345788999999999999999999999999999


Q ss_pred             HHHH
Q 044888          115 LAWR  118 (154)
Q Consensus       115 ~~~~  118 (154)
                      .+.+
T Consensus       275 ~~~~  278 (280)
T cd05043         275 DFHA  278 (280)
T ss_pred             HHHh
Confidence            8765

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.73  E-value=2e-17  Score=120.00  Aligned_cols=112  Identities=26%  Similarity=0.431  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCc-------
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDP-------   74 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~-------   74 (154)
                      +.+.++.|++.||+|||   ..+++|+|++|.|++++.++.+|++|||++......... .....+..+++||       
T Consensus       113 ~~~~~~~~i~~al~~lH---~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~y~apE~~~~~~~  188 (270)
T cd05047         113 QLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK-TMGRLPVRWMAIESLNYSVY  188 (270)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeecccccceEEEcCCCeEEECCCCCccccchhhhc-cCCCCccccCChHHHccCCC
Confidence            34778999999999999   566999999999999999999999999987422110000 0000000011111       


Q ss_pred             --------------------------------------cccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 044888           75 --------------------------------------FLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        75 --------------------------------------~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~  116 (154)
                                                            ......+...+.++.+++.+||+.+|.+||++.+++..|+++
T Consensus       189 ~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         189 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             CchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence                                                  011122334567899999999999999999999999999987


Q ss_pred             H
Q 044888          117 W  117 (154)
Q Consensus       117 ~  117 (154)
                      .
T Consensus       269 ~  269 (270)
T cd05047         269 L  269 (270)
T ss_pred             h
Confidence            5

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.73  E-value=2.4e-17  Score=121.53  Aligned_cols=116  Identities=20%  Similarity=0.294  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~--   77 (154)
                      ..+.++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||+++........  .....++..+++|+.+.  
T Consensus       110 ~~~~~~~qi~~~L~~LH---~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  186 (303)
T cd05110         110 LLLNWCVQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYR  186 (303)
T ss_pred             HHHHHHHHHHHHHHHHh---hcCeeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccC
Confidence            35788999999999999   556999999999999999999999999998754321100  00000111111111110  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++..+.+++..||..+|++||++.++++.|+
T Consensus       187 ~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~  266 (303)
T cd05110         187 KFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFS  266 (303)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                                                       0122345678899999999999999999999999999


Q ss_pred             HHHHhc
Q 044888          115 LAWRQQ  120 (154)
Q Consensus       115 ~~~~~~  120 (154)
                      .+.+..
T Consensus       267 ~~~~~~  272 (303)
T cd05110         267 RMARDP  272 (303)
T ss_pred             HHHhch
Confidence            876543

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.73  E-value=1.6e-17  Score=121.67  Aligned_cols=109  Identities=20%  Similarity=0.289  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~---   77 (154)
                      .+.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++........  ......++..+++||.+.   
T Consensus       132 ~~~~~~~i~~al~~LH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  208 (296)
T cd05051         132 LLYMATQIASGMRYLE---SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGK  208 (296)
T ss_pred             HHHHHHHHHHHHHHHH---HcCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCC
Confidence            4678999999999999   55699999999999999999999999999875322100  000000111122221110   


Q ss_pred             --------------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           78 --------------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        78 --------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                        ...+..++.++.+++..||+.+|.+||++.
T Consensus       209 ~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~  288 (296)
T cd05051         209 FTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFR  288 (296)
T ss_pred             CCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHH
Confidence                                                              011223457899999999999999999999


Q ss_pred             HHHHHHH
Q 044888          108 DVLCNLG  114 (154)
Q Consensus       108 ~v~~~L~  114 (154)
                      +|++.|+
T Consensus       289 el~~~L~  295 (296)
T cd05051         289 EIHLFLQ  295 (296)
T ss_pred             HHHHHhc
Confidence            9999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.73  E-value=1.3e-17  Score=124.25  Aligned_cols=106  Identities=19%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus        97 ~~~~~~qi~~~L~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  173 (323)
T cd05571          97 ARFYGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYG  173 (323)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCC
Confidence            3457899999999999   566999999999999999999999999998754222111222345666666655432    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~  111 (154)
                                                             ..+...+.++.+++.+||+.||++||     +..++++
T Consensus       174 ~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         174 RAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             ccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence                                                   12334567889999999999999999     7888864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.72  E-value=2.6e-17  Score=126.05  Aligned_cols=112  Identities=20%  Similarity=0.233  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~----   76 (154)
                      .++++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||+++.......  ......++..+++++.+    
T Consensus       241 ~~~~~~qi~~aL~~LH---~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  317 (401)
T cd05107         241 LVGFSYQVANGMEFLA---SKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNL  317 (401)
T ss_pred             HHHHHHHHHHHHHHHh---cCCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCC
Confidence            4678899999999999   56699999999999999999999999999875421100  00000111112221111    


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                +...+..++.++.+|+..||+.+|++||++.+|+..|+
T Consensus       318 ~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~  397 (401)
T cd05107         318 YTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVG  397 (401)
T ss_pred             CCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence                                                      11223345678999999999999999999999999999


Q ss_pred             HHH
Q 044888          115 LAW  117 (154)
Q Consensus       115 ~~~  117 (154)
                      .+.
T Consensus       398 ~~~  400 (401)
T cd05107         398 DLL  400 (401)
T ss_pred             HHh
Confidence            865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.72  E-value=2.9e-17  Score=117.74  Aligned_cols=110  Identities=23%  Similarity=0.309  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~---   76 (154)
                      +.+.++.|++.||.|||   ..+++|+|++|.||+++.++.+|++|||++..........  ........+++||.+   
T Consensus        95 ~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  171 (252)
T cd05084          95 ELIQMVENAAAGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYG  171 (252)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCC
Confidence            35678999999999999   5669999999999999999999999999876533210000  000001112222211   


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ....+..++..+.+++.+||+.+|++||++.+|.++|+
T Consensus       172 ~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         172 RYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence                                                      11233445788999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.72  E-value=3.6e-17  Score=117.96  Aligned_cols=113  Identities=20%  Similarity=0.265  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +.++++.+++.||.|||   ..+++|+||+|.||+++.++.++++|||++..............++..+.+||.+.+   
T Consensus       107 ~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~  183 (267)
T cd08224         107 TIWKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGY  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCCC
Confidence            35778999999999999   556999999999999999999999999987654322111111122222222222110   


Q ss_pred             -------------------------------------------CCCc-chHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 -------------------------------------------KIDP-GCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 -------------------------------------------~~~~-~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 +.+. ..+..+.+++.+||+.+|++||++.+|+++|+
T Consensus       184 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~  263 (267)
T cd08224         184 NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAK  263 (267)
T ss_pred             CchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHH
Confidence                                                       1111 44568999999999999999999999999998


Q ss_pred             HHH
Q 044888          115 LAW  117 (154)
Q Consensus       115 ~~~  117 (154)
                      .+.
T Consensus       264 ~~~  266 (267)
T cd08224         264 EMH  266 (267)
T ss_pred             Hhc
Confidence            763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.72  E-value=1.6e-17  Score=130.39  Aligned_cols=107  Identities=25%  Similarity=0.315  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+||+|||+++.......  ......|+..|++||.+.+  
T Consensus       145 ~~~i~~qll~aL~~lH---~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~  221 (496)
T PTZ00283        145 AGLLFIQVLLAVHHVH---SKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKP  221 (496)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCC
Confidence            3567899999999999   56699999999999999999999999999876543211  1122345666666665432  


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                ..+...+.++.+++..||+.+|.+||++.+++..
T Consensus       222 ~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        222 YSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence                                                      1234567789999999999999999999999753

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.72  E-value=2.2e-17  Score=119.84  Aligned_cols=109  Identities=17%  Similarity=0.269  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~----   76 (154)
                      .+.++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||+++.......  ......++..+++||.+    
T Consensus       121 ~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  197 (277)
T cd05032         121 FIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGV  197 (277)
T ss_pred             HHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCC
Confidence            5678999999999999   56699999999999999999999999998764322100  00000011111222111    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                               ....+..++..+.+++.+||+.+|++|||+.+++..|+
T Consensus       198 ~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         198 FTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             CCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence                                                     01234456789999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.72  E-value=4e-17  Score=117.66  Aligned_cols=111  Identities=28%  Similarity=0.378  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee-eecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC-CYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~g~~~~~~~~~~----   76 (154)
                      +..+++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++.......... ........+++|+.+    
T Consensus       104 ~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  180 (261)
T cd05068         104 QLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNR  180 (261)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCC
Confidence            35788999999999999   5569999999999999999999999999886543211000 000001112222211    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ....+...+..+.+++.+||+.+|++||++.++++.|+.
T Consensus       181 ~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         181 FSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence                                                     012234567889999999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.72  E-value=4.4e-17  Score=117.51  Aligned_cols=111  Identities=24%  Similarity=0.346  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~----   76 (154)
                      .++.++.|++.||.|||   ..+++|+||++.|++++.++.++++|||++....... .......++..+++|+..    
T Consensus       103 ~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~  179 (260)
T cd05069         103 QLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR  179 (260)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCC
Confidence            35778999999999999   5569999999999999999999999999986543210 000000111112111111    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ....+...+..+.+++.+||+.+|++||++.+|++.|+.
T Consensus       180 ~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         180 FTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             cChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                                                     011233456789999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.72  E-value=4.3e-17  Score=117.24  Aligned_cols=109  Identities=23%  Similarity=0.336  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce-eeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL-CCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~g~~~~~~~~~~~---   77 (154)
                      .++.++.|++.||.|||   ..+++|+|+++.|++++.++.++++|||.+......... .....+...+++||.+.   
T Consensus       101 ~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  177 (256)
T cd05114         101 MLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSK  177 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCc
Confidence            35678999999999999   566999999999999999999999999988754321100 00001111222222111   


Q ss_pred             --------------------C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                          +                      ..+...+..+.+++.+||+.+|++||++.++++.|
T Consensus       178 ~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         178 YSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             cchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence                                0                      11233456789999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.72  E-value=4.3e-17  Score=117.85  Aligned_cols=112  Identities=23%  Similarity=0.306  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeee---cccccccccCccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCY---QSGTLGLVVDPFL--   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~---~~g~~~~~~~~~~--   76 (154)
                      +++.++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++............   ......+++|+.+  
T Consensus       108 ~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  184 (268)
T cd05063         108 QLVGMLRGIAAGMKYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAY  184 (268)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhc
Confidence            45788999999999999   556999999999999999999999999988654321100000   0000011111110  


Q ss_pred             -------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 -------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 -------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                 ..+.+..++..+.+++.+||+.+|++||++.+|++.|
T Consensus       185 ~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l  264 (268)
T cd05063         185 RKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLL  264 (268)
T ss_pred             CCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence                                                       1122334678899999999999999999999999999


Q ss_pred             HHH
Q 044888          114 GLA  116 (154)
Q Consensus       114 ~~~  116 (154)
                      +++
T Consensus       265 ~~~  267 (268)
T cd05063         265 DKL  267 (268)
T ss_pred             Hhh
Confidence            875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.71  E-value=9e-18  Score=119.92  Aligned_cols=115  Identities=26%  Similarity=0.253  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      -+|+.|+..|+.|||.   ..|+||||||.|||++++..++++|||++..+.+.- .....+|+++|++||.+.-     
T Consensus       126 R~iMrqlfegVeylHa---~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~Ge-kLrelCGTPgYLAPEtikC~m~e~  201 (411)
T KOG0599|consen  126 RRIMRQLFEGVEYLHA---RNIVHRDLKPENILLDDNMNIKISDFGFACQLEPGE-KLRELCGTPGYLAPETIKCSMYEN  201 (411)
T ss_pred             HHHHHHHHHHHHHHHH---hhhhhcccChhheeeccccceEEeccceeeccCCch-hHHHhcCCCcccChhheeeecccC
Confidence            4689999999999994   559999999999999999999999999998877632 2223468888888887642     


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                      +.-.+.+.+..+++.+|++.||.+|-|..|++
T Consensus       202 ~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~L  281 (411)
T KOG0599|consen  202 HPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEAL  281 (411)
T ss_pred             CCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHh
Confidence                                                            11134567888999999999999999999998


Q ss_pred             HH--HHHHHHhcCC
Q 044888          111 CN--LGLAWRQQGA  122 (154)
Q Consensus       111 ~~--L~~~~~~~~~  122 (154)
                      +.  +..+...+.+
T Consensus       282 aHpff~q~~~~~~r  295 (411)
T KOG0599|consen  282 AHPFFIQIAQQQAR  295 (411)
T ss_pred             cChHHHHHHHhccc
Confidence            53  4444444443

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.71  E-value=3.7e-17  Score=119.21  Aligned_cols=110  Identities=23%  Similarity=0.330  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~---   77 (154)
                      .+.++.|++.||.|||   ..+++|+|++|.|++++.++.+|++|||+++.......  ......++..+++||.+.   
T Consensus       126 ~~~i~~~i~~al~~lH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  202 (283)
T cd05090         126 FLHIAIQIAAGMEYLS---SHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGK  202 (283)
T ss_pred             HHHHHHHHHHHHHHHH---hcCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCC
Confidence            3678999999999999   55699999999999999999999999999865422100  000000111122221110   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++..+.+++..||+.+|.+||++.+|.+.|..
T Consensus       203 ~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         203 FSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             CCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence                                                      12234467789999999999999999999999988864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.71  E-value=4.3e-17  Score=117.11  Aligned_cols=109  Identities=28%  Similarity=0.419  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      ....++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+........   .......+.+||.+     
T Consensus       103 ~~~~~~~qi~~~l~~lh---~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~---~~~~~~~~~ape~~~~~~~  176 (256)
T cd05039         103 QQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD---SGKLPVKWTAPEALREKKF  176 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCccchhcccceEEEeCCCCEEEcccccccccccccc---cCCCcccccCchhhcCCcC
Confidence            35678999999999999   55699999999999999999999999998876532111   00001111111111     


Q ss_pred             ----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 044888           77 ----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        77 ----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~  116 (154)
                                                              ....+...+..+.+++.+||+.+|++||++.+++.+|+.+
T Consensus       177 ~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         177 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence                                                    1112334578899999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.71  E-value=6e-17  Score=118.26  Aligned_cols=112  Identities=19%  Similarity=0.294  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~-   77 (154)
                      +++.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++.........   .....+...+++||.+. 
T Consensus       110 ~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~  186 (284)
T cd05079         110 QQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQ  186 (284)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhcc
Confidence            46788999999999999   566999999999999999999999999988654321100   00000111111111100 


Q ss_pred             ----------------------------------------------------------CCCCcchHHHHHHHHHHhhccC
Q 044888           78 ----------------------------------------------------------GKIDPGCFKTFTDIAKKCLADR   99 (154)
Q Consensus        78 ----------------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~   99 (154)
                                                                                .+.+..++..+.+|+.+||+.+
T Consensus       187 ~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  266 (284)
T cd05079         187 SKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQ  266 (284)
T ss_pred             CCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCC
Confidence                                                                      1113345678999999999999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 044888          100 GCDRPQMGDVLCNLGLA  116 (154)
Q Consensus       100 p~~RP~~~~v~~~L~~~  116 (154)
                      |++||++.+++..|+.+
T Consensus       267 p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         267 PSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             cccCcCHHHHHHHHHhh
Confidence            99999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.71  E-value=4.6e-17  Score=117.91  Aligned_cols=111  Identities=25%  Similarity=0.386  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eeccc--------------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSG--------------   66 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g--------------   66 (154)
                      .++++.|++.||.|||   ..+++|+|++|.||+++.++.+|++|||+++.........  ....+              
T Consensus       115 ~~~~~~~i~~~l~~lH---~~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~  191 (273)
T cd05074         115 LVRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNV  191 (273)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCc
Confidence            4778999999999999   4569999999999999999999999999987543210000  00000              


Q ss_pred             --------ccccccCcccc-----------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           67 --------TLGLVVDPFLR-----------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        67 --------~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                              .++.++-+.+.                       ...+...+..+.+++.+||+.+|++||++.++++.|++
T Consensus       192 ~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~  271 (273)
T cd05074         192 YTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLEL  271 (273)
T ss_pred             cchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence                    00000000000                       01223466889999999999999999999999999987


Q ss_pred             H
Q 044888          116 A  116 (154)
Q Consensus       116 ~  116 (154)
                      +
T Consensus       272 ~  272 (273)
T cd05074         272 I  272 (273)
T ss_pred             h
Confidence            5

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.71  E-value=4e-17  Score=117.64  Aligned_cols=111  Identities=23%  Similarity=0.301  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~----   76 (154)
                      ++.+++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||.+....... .......+...+++||.+    
T Consensus       103 ~~~~~~~~l~~al~~lH---~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  179 (260)
T cd05070         103 NLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR  179 (260)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCC
Confidence            46788999999999999   5569999999999999999999999999986543211 000000111222222211    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ..+.+...+..+.+++.+||+.+|++|||+.++.+.|+.
T Consensus       180 ~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         180 FTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             CcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                                                     012233457789999999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.71  E-value=3.3e-17  Score=118.07  Aligned_cols=106  Identities=19%  Similarity=0.307  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc--------EEEecCCCcccCCCCcceeeecccccccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV--------AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVD   73 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~--------~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~   73 (154)
                      ++++++.|++.||.|||   ..+++|+|+++.||+++.++.        ++++|||++.......    ...++..+++|
T Consensus       101 ~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~----~~~~~~~y~aP  173 (258)
T cd05078         101 WKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKE----ILLERIPWVPP  173 (258)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEecccccccccCCch----hccccCCccCc
Confidence            35678999999999999   566999999999999987654        6899999875443210    11122223333


Q ss_pred             ccccC--------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           74 PFLRG--------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        74 ~~~~~--------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                      |.+.+                                            ..+.....++.+++.+||+.+|++||++.++
T Consensus       174 E~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  253 (258)
T cd05078         174 ECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFYEDRHQLPAPKWTELANLINQCMDYEPDFRPSFRAI  253 (258)
T ss_pred             hhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHHHHHHccccCCCCCcHHHHHHHHHHhccChhhCCCHHHH
Confidence            22210                                            1222344678999999999999999999999


Q ss_pred             HHHHH
Q 044888          110 LCNLG  114 (154)
Q Consensus       110 ~~~L~  114 (154)
                      ++.|+
T Consensus       254 l~~l~  258 (258)
T cd05078         254 IRDLN  258 (258)
T ss_pred             HHhcC
Confidence            98863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.71  E-value=1.5e-17  Score=123.24  Aligned_cols=106  Identities=22%  Similarity=0.166  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.++++|||+++.............|+..+++||.+.+    
T Consensus        95 ~~~~~~qi~~~l~~lH---~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  171 (312)
T cd05585          95 ARFYTAELLCALENLH---KFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYT  171 (312)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCC
Confidence            4568899999999999   556999999999999999999999999998754322111222345566666655432    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                             ..+...+..+.+++.+||+.||++||++..+.+
T Consensus       172 ~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e  243 (312)
T cd05585         172 KAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQE  243 (312)
T ss_pred             CccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHH
Confidence                                                   122345667889999999999999986544433

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.71  E-value=9.4e-18  Score=127.07  Aligned_cols=108  Identities=25%  Similarity=0.313  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +-.+++.|++.|+.|||   ...|+|||||+.||++.++..+++.|||+++.+...........|+..|+.||.+.+   
T Consensus       107 ~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pY  183 (426)
T KOG0589|consen  107 RILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPY  183 (426)
T ss_pred             HHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCC
Confidence            34678999999999999   455999999999999999999999999999999886656666788999988888765   


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                               +.+...+.++..++..|++.+|+.||++.+++.+
T Consensus       184 n~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  184 NEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             CccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence                                                     3345678889999999999999999999999876

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.71  E-value=5e-17  Score=118.97  Aligned_cols=112  Identities=17%  Similarity=0.245  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~~---   77 (154)
                      .++++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||+++.........  ....++..+++||.+.   
T Consensus       121 ~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~  197 (288)
T cd05061         121 MIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGV  197 (288)
T ss_pred             HHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCC
Confidence            3568899999999999   5669999999999999999999999999886432210000  0000011111211110   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++..+.+++..||+.+|++||++.++++.|+.
T Consensus       198 ~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~  277 (288)
T cd05061         198 FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD  277 (288)
T ss_pred             CChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence                                                      01233456889999999999999999999999998887


Q ss_pred             HH
Q 044888          116 AW  117 (154)
Q Consensus       116 ~~  117 (154)
                      ..
T Consensus       278 ~~  279 (288)
T cd05061         278 DL  279 (288)
T ss_pred             hc
Confidence            64

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.71  E-value=5.3e-17  Score=119.25  Aligned_cols=110  Identities=17%  Similarity=0.228  Sum_probs=77.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDP-----   74 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~-----   74 (154)
                      +.++++.|++.||.|||   +.+++|+||+|.||+++.++.++++|||++..........  ....+...++.++     
T Consensus       131 ~~~~~~~~i~~al~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~  207 (296)
T cd05095         131 TLIFMATQIASGMKYLS---SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLG  207 (296)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcC
Confidence            35788999999999999   5569999999999999999999999999987542210000  0000000000000     


Q ss_pred             -----------------cc-------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           75 -----------------FL-------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        75 -----------------~~-------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                       .+                               ..+.+..++..+.+++.+||+.+|++||++
T Consensus       208 ~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~  287 (296)
T cd05095         208 KFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSF  287 (296)
T ss_pred             CccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCH
Confidence                             00                               011234567889999999999999999999


Q ss_pred             HHHHHHHH
Q 044888          107 GDVLCNLG  114 (154)
Q Consensus       107 ~~v~~~L~  114 (154)
                      .+|++.|+
T Consensus       288 ~~i~~~l~  295 (296)
T cd05095         288 QEIHATLL  295 (296)
T ss_pred             HHHHHHHh
Confidence            99999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.71  E-value=3.7e-17  Score=120.64  Aligned_cols=118  Identities=25%  Similarity=0.470  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-------c-----ee--------
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-------T-----LC--------   61 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-------~-----~~--------   61 (154)
                      +.+.++.|++.||+|||   ..+++|+||+|.||+++.++.++++|||++.......       +     ..        
T Consensus       125 ~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  201 (303)
T cd05088         125 QLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYT  201 (303)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCccccccchheEEecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCc
Confidence            35778999999999999   5669999999999999999999999999885321100       0     00        


Q ss_pred             -eecccccccccCccc-----------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 044888           62 -CYQSGTLGLVVDPFL-----------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus        62 -~~~~g~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~  117 (154)
                       .....+++.++-+.+                       ....+...+..+.+++.+||+.+|++||++.+++..|+.+.
T Consensus       202 ~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~  281 (303)
T cd05088         202 TNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  281 (303)
T ss_pred             ccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence             000001111111111                       11122345678899999999999999999999999999887


Q ss_pred             HhcCC
Q 044888          118 RQQGA  122 (154)
Q Consensus       118 ~~~~~  122 (154)
                      +....
T Consensus       282 ~~~~~  286 (303)
T cd05088         282 EERKT  286 (303)
T ss_pred             Hhhhh
Confidence            65543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.71  E-value=1.7e-17  Score=121.36  Aligned_cols=51  Identities=31%  Similarity=0.518  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      +...++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||++....
T Consensus       111 ~~~~i~~qi~~aL~~lH---~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  161 (290)
T cd07862         111 TIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYS  161 (290)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEcCCCCEEEccccceEecc
Confidence            35678999999999999   5569999999999999999999999999986543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.71  E-value=3.6e-17  Score=121.86  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+  ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus        97 ~~~~~~qi~~aL~~lH~--~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (325)
T cd05594          97 ARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYG  174 (325)
T ss_pred             HHHHHHHHHHHHHHHHh--cCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCC
Confidence            45688999999999994  256999999999999999999999999998653321111112234555555544321    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLCN  112 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~~  112 (154)
                                                             ..+...+.++.+++.+||+.||++|+     ++.++++.
T Consensus       175 ~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         175 RAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             CccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence                                                   12334567889999999999999996     88888743

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.71  E-value=3.1e-17  Score=122.44  Aligned_cols=107  Identities=21%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus        97 ~~~~~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  173 (328)
T cd05593          97 TRFYGAEIVSALDYLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYG  173 (328)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCC
Confidence            4578999999999999   556999999999999999999999999998754322111222345666666665432    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLCN  112 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~~  112 (154)
                                                             ..+...+.++.+++.+||+.||++||     ++.++++.
T Consensus       174 ~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         174 RAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             ccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence                                                   12233456788999999999999997     88888753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.71  E-value=5.6e-17  Score=116.23  Aligned_cols=110  Identities=23%  Similarity=0.294  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~--   77 (154)
                      .+.+++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||.+.......  .......++..+++||.+.  
T Consensus       106 ~~~~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  182 (262)
T cd00192         106 DLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDG  182 (262)
T ss_pred             HHHHHHHHHHHHHHHHH---cCCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccC
Confidence            45788999999999999   5669999999999999999999999999987665421  0000111122222222111  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++.++.+++..||+.+|++||++.+++..|+
T Consensus       183 ~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         183 IFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             CcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                                                       1223456788999999999999999999999998874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.71  E-value=5.1e-17  Score=116.89  Aligned_cols=109  Identities=27%  Similarity=0.350  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee-eecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC-CYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~g~~~~~~~~~~----   76 (154)
                      +.+.++.|++.||.|||   ..+++|+|++|.||+++.++.+|++|||+++......... ....+...+++||.+    
T Consensus       101 ~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~  177 (256)
T cd05059         101 WLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSR  177 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCC
Confidence            35778999999999999   5569999999999999999999999999886543210000 000000111111111    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                               ....+..++..+.+++.+||..+|++||++.++++.|
T Consensus       178 ~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         178 FSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             CCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence                                                     1122345678899999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.71  E-value=4.5e-17  Score=118.74  Aligned_cols=110  Identities=19%  Similarity=0.205  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~--   77 (154)
                      +++.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++.........  .....++..+++||.+.  
T Consensus       123 ~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  199 (280)
T cd05092         123 QMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYR  199 (280)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccC
Confidence            35678899999999999   566999999999999999999999999988643211000  00000011111111110  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++..+.+++.+||+.+|.+||++.+|...|+
T Consensus       200 ~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         200 KFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             CcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence                                                       1223346788999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.70  E-value=5.4e-17  Score=116.55  Aligned_cols=107  Identities=21%  Similarity=0.304  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      .+.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+..............++..+++||.+.     
T Consensus       102 ~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~  178 (255)
T cd08219         102 ILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYN  178 (255)
T ss_pred             HHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcC
Confidence            4678999999999999   56699999999999999999999999998865533211111111222222222211     


Q ss_pred             ---------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 ---------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ---------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                             ...+...+..+.+++.+||+.+|++||++.+|+..
T Consensus       179 ~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         179 NKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             chhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence                                                   01233456778999999999999999999999754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.70  E-value=4.9e-17  Score=127.11  Aligned_cols=106  Identities=18%  Similarity=0.205  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+||+|||+++.......  ......|+..|++||.+.+  
T Consensus       171 ~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  247 (478)
T PTZ00267        171 VGLLFYQIVLALDEVH---SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKR  247 (478)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCC
Confidence            3457899999999999   55699999999999999999999999999986543221  1222346667777765432  


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                ..+...+.++.+++..||+.+|++||++.+++.
T Consensus       248 ~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        248 YSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             CCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence                                                      112245678999999999999999999999864

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.70  E-value=7.4e-17  Score=115.83  Aligned_cols=106  Identities=21%  Similarity=0.368  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-------cEEEecCCCcccCCCCcceeeecccccccccCc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-------VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDP   74 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-------~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~   74 (154)
                      +++.++.|++.||.|||   ..+++|+||+|.||+++.++       .++++|||++.......    ...+...+++||
T Consensus       102 ~~~~~~~~i~~~l~~LH---~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~~~~y~aPE  174 (259)
T cd05037         102 WKLDVAKQLASALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSRE----ERVERIPWIAPE  174 (259)
T ss_pred             HHHHHHHHHHHHHHHHh---hCCeecccCccceEEEecCccccCCceeEEeCCCCccccccccc----ccccCCCccChh
Confidence            46788999999999999   56699999999999999877       79999999887643210    000111111111


Q ss_pred             cccC---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           75 FLRG---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        75 ~~~~---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                      .+.+                                             ..+......+.+++.+||+.+|.+||++.+|
T Consensus       175 ~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i  254 (259)
T cd05037         175 CIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLPMPDCAELANLINQCWTYDPTKRPSFRAI  254 (259)
T ss_pred             hhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCCCCCCCCchHHHHHHHHHhccChhhCCCHHHH
Confidence            1100                                             1111223688899999999999999999999


Q ss_pred             HHHHH
Q 044888          110 LCNLG  114 (154)
Q Consensus       110 ~~~L~  114 (154)
                      ++.|+
T Consensus       255 l~~l~  259 (259)
T cd05037         255 LRDLN  259 (259)
T ss_pred             HHhcC
Confidence            98763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.70  E-value=9.6e-17  Score=115.99  Aligned_cols=112  Identities=23%  Similarity=0.301  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---   77 (154)
                      +++.++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||.+........ ......++..++.||.+.   
T Consensus       103 ~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  179 (262)
T cd05071         103 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR  179 (262)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCC
Confidence            35778999999999999   55699999999999999999999999998865432110 000011112222222110   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+...+..+.+++.+||+.+|++||++.++++.|+.
T Consensus       180 ~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~  259 (262)
T cd05071         180 FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED  259 (262)
T ss_pred             CCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence                                                      01123457889999999999999999999999999986


Q ss_pred             H
Q 044888          116 A  116 (154)
Q Consensus       116 ~  116 (154)
                      .
T Consensus       260 ~  260 (262)
T cd05071         260 Y  260 (262)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.70  E-value=5.7e-17  Score=116.79  Aligned_cols=110  Identities=23%  Similarity=0.311  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee-eecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC-CYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~g~~~~~~~~~~----   76 (154)
                      +.++++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||.++......... ....++..+..||.+    
T Consensus       101 ~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~  177 (256)
T cd05113         101 QLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSK  177 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCc
Confidence            45789999999999999   5569999999999999999999999999876543211000 000001111111110    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                               ....+...+..+.+++..||+.+|++||++.+|+..|+
T Consensus       178 ~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         178 FSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             ccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence                                                     00122335678899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.70  E-value=1e-16  Score=115.96  Aligned_cols=112  Identities=23%  Similarity=0.339  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeee---cccccccccCccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCY---QSGTLGLVVDPFL--   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~---~~g~~~~~~~~~~--   76 (154)
                      +.++++.|++.||.|||   ..+++|+|++|.|++++.++.++++|||++............   ..++..+++|+.+  
T Consensus       107 ~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~  183 (267)
T cd05066         107 QLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAY  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhcc
Confidence            35788999999999999   566999999999999999999999999988754321110000   0000111111111  


Q ss_pred             -------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 -------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 -------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                 ..+.+..++..+.+++.+||+.+|++||+|.++++.|
T Consensus       184 ~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  263 (267)
T cd05066         184 RKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSIL  263 (267)
T ss_pred             CccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHH
Confidence                                                       0112234567899999999999999999999999999


Q ss_pred             HHH
Q 044888          114 GLA  116 (154)
Q Consensus       114 ~~~  116 (154)
                      +++
T Consensus       264 ~~~  266 (267)
T cd05066         264 DKL  266 (267)
T ss_pred             Hhh
Confidence            875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.70  E-value=8.9e-17  Score=116.85  Aligned_cols=112  Identities=27%  Similarity=0.413  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee---ecccc-----------
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC---YQSGT-----------   67 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~---~~~g~-----------   67 (154)
                      +++.++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||.+...........   ...+.           
T Consensus       110 ~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~  186 (284)
T cd05038         110 RLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRT  186 (284)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHcc
Confidence            35778999999999999   56699999999999999999999999998876542100000   00000           


Q ss_pred             -----------cccccCcccc-------------------------------------CCCCcchHHHHHHHHHHhhccC
Q 044888           68 -----------LGLVVDPFLR-------------------------------------GKIDPGCFKTFTDIAKKCLADR   99 (154)
Q Consensus        68 -----------~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~l~~~C~~~~   99 (154)
                                 ++.++-+.+.                                     ...+..++.++.+++.+||+.+
T Consensus       187 ~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  266 (284)
T cd05038         187 SKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAE  266 (284)
T ss_pred             CCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccC
Confidence                       0101111110                                     0112345678999999999999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 044888          100 GCDRPQMGDVLCNLGLA  116 (154)
Q Consensus       100 p~~RP~~~~v~~~L~~~  116 (154)
                      |++||++.+|+++|+.+
T Consensus       267 p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         267 PQDRPSFADLILIVDRL  283 (284)
T ss_pred             hhhCCCHHHHHHHHhhc
Confidence            99999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.70  E-value=5.2e-17  Score=116.03  Aligned_cols=103  Identities=26%  Similarity=0.396  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK------   79 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------   79 (154)
                      +...+..||.||-+  ..+++|||+||+|||+|..+.+|+||||++..+..+. ...-..|...||+||++..+      
T Consensus       196 ~tva~v~AL~YLKe--KH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSk-AhtrsAGC~~YMaPERidp~~~~kYD  272 (391)
T KOG0983|consen  196 MTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSK-AHTRSAGCAAYMAPERIDPPDKPKYD  272 (391)
T ss_pred             hHHHHHHHHHHHHH--hcceeecccCccceEEccCCCEEeecccccceeeccc-ccccccCCccccCccccCCCCCCccc
Confidence            34556789999987  5679999999999999999999999999998876542 22334677888888877541      


Q ss_pred             --------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 --------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 --------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  .....+..+.+++..|++.|+.+||...++++
T Consensus       273 iRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  273 IRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             hhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence                                                        11125778999999999999999999999864

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.70  E-value=7.7e-17  Score=117.37  Aligned_cols=105  Identities=21%  Similarity=0.375  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-------cEEEecCCCcccCCCCcceeeecccccccccCc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-------VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDP   74 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-------~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~   74 (154)
                      ++++++.|++.||.|||   ..+++|+||+|.||+++..+       .++++|||++........    ..++..+++||
T Consensus       118 ~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~aPe  190 (274)
T cd05076         118 WKITVAQQLASALSYLE---DKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREE----RVERIPWIAPE  190 (274)
T ss_pred             HHHHHHHHHHHHHHHHH---cCCccCCCCCcccEEEeccCcccCccceeeecCCccccccccccc----cccCCcccCch
Confidence            46789999999999999   55699999999999997543       379999998754321100    01111111111


Q ss_pred             ccc--------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           75 FLR--------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        75 ~~~--------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                      .+.                                            ...+......+.+++.+||+.+|++||++.+|+
T Consensus       191 ~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il  270 (274)
T cd05076         191 CVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKKHRLPEPSCKELATLISQCLTYEPTQRPSFRTIL  270 (274)
T ss_pred             hhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHHHHHhccCCCCCCChHHHHHHHHHcccChhhCcCHHHHH
Confidence            110                                            011222345789999999999999999999999


Q ss_pred             HHH
Q 044888          111 CNL  113 (154)
Q Consensus       111 ~~L  113 (154)
                      +.|
T Consensus       271 ~~L  273 (274)
T cd05076         271 RDL  273 (274)
T ss_pred             Hhh
Confidence            877

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.70  E-value=2.5e-17  Score=124.66  Aligned_cols=114  Identities=25%  Similarity=0.310  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-----ceeeecccccccccCcccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-----TLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~   77 (154)
                      .-+++.++..||+|||   ..+|+||||||+|+|++.++++||+|||++.......     .......|++..++||...
T Consensus       212 Ar~ylrDvv~GLEYLH---~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~  288 (576)
T KOG0585|consen  212 ARKYLRDVVLGLEYLH---YQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCS  288 (576)
T ss_pred             HHHHHHHHHHHHHHHH---hcCeeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhc
Confidence            4568899999999999   6669999999999999999999999999997663210     1111246777777776553


Q ss_pred             C-------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           78 G-------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        78 ~-------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                      +                                                 +..++..+++.+|+.+.|++||++|-+..+
T Consensus       289 ~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~  368 (576)
T KOG0585|consen  289 GGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPD  368 (576)
T ss_pred             CCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhh
Confidence            3                                                 122345788999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 044888          109 VLCNLGLAWRQ  119 (154)
Q Consensus       109 v~~~L~~~~~~  119 (154)
                      |..........
T Consensus       369 ik~Hpwvt~~g  379 (576)
T KOG0585|consen  369 IKLHPWVTRDG  379 (576)
T ss_pred             heecceeccCC
Confidence            98776655443

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.70  E-value=1.6e-17  Score=122.03  Aligned_cols=96  Identities=30%  Similarity=0.245  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK------   79 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------   79 (154)
                      ++.+|+.||.|||   +.+|+||||||.|||++..|+++|+|||+++............+|+..||+||.+.+.      
T Consensus       130 YlaEi~lAL~~LH---~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~v  206 (357)
T KOG0598|consen  130 YLAEIVLALGYLH---SKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAV  206 (357)
T ss_pred             HHHHHHHHHHHHH---hCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCccc
Confidence            4688999999999   6669999999999999999999999999999766655556668999999999988651      


Q ss_pred             --------------------------------------CCcchHHHHHHHHHHhhccCCCCCC
Q 044888           80 --------------------------------------IDPGCFKTFTDIAKKCLADRGCDRP  104 (154)
Q Consensus        80 --------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP  104 (154)
                                                            .+.-...+..+++...+..+|++|-
T Consensus       207 DWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  207 DWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             chHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCCccCCHHHHHHHHHHhccCHHHhc
Confidence                                                  1112566777888888888888884

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.70  E-value=9e-17  Score=116.78  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~---   77 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++........  ......++..+++||.+.   
T Consensus       124 ~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  200 (280)
T cd05049         124 LLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRK  200 (280)
T ss_pred             HHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCC
Confidence            4667899999999999   56699999999999999999999999998864321100  000001112222222211   


Q ss_pred             --------------------C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 --------------------G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 --------------------~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                          +                      ..+...+..+.+++.+||+.+|++||++.||++.|+
T Consensus       201 ~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         201 FTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             cchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence                                0                      123345788999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.70  E-value=6.8e-17  Score=116.43  Aligned_cols=111  Identities=21%  Similarity=0.331  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC-CcceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN-MLTLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~-~~~~~~~~~g~~~~~~~~~~----   76 (154)
                      +++.++.|++.||.|||   ..+++|+|++|.|++++.++.++++|||++..... .........+...++.|+.+    
T Consensus       103 ~~~~i~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~  179 (260)
T cd05067         103 KLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT  179 (260)
T ss_pred             HHHHHHHHHHHHHHHHh---cCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCC
Confidence            35678999999999999   56699999999999999999999999998865441 11000000111111111111    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ..+.+...+.++.+++.+||+.+|++||++.+++..|+.
T Consensus       180 ~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         180 FTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             cCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence                                                     011223356789999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.70  E-value=6e-17  Score=118.40  Aligned_cols=110  Identities=23%  Similarity=0.324  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~---   77 (154)
                      ++.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++........  ..........+++||.+.   
T Consensus       132 ~~~~~~~i~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  208 (288)
T cd05050         132 QLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNR  208 (288)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCC
Confidence            4789999999999999   55699999999999999999999999998764321100  000000001111111100   


Q ss_pred             ---------------------------------------C---CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ---------------------------------------G---KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ---------------------------------------~---~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                             +   ..+..++.++.+++.+||+.+|++||++.|+++.|++
T Consensus       209 ~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         209 YTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             CCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence                                                   0   1233467889999999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.70  E-value=5e-17  Score=125.80  Aligned_cols=111  Identities=19%  Similarity=0.290  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~----   76 (154)
                      -++|+.||++|++||.   +..++|||+.+.|+|++.++++||+|||+++.+.....  .+....-.+.+|+.|.+    
T Consensus       639 ~vsi~tqiasgmaYLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgk  715 (807)
T KOG1094|consen  639 GVSICTQIASGMAYLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGK  715 (807)
T ss_pred             hHHHHHHHHHHHHHHH---hhchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhcc
Confidence            4679999999999999   55599999999999999999999999999986543200  00000001111111111    


Q ss_pred             -------------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           77 -------------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        77 -------------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                       ....|+-|+..+++++..||..+-++||+|+
T Consensus       716 FttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe  795 (807)
T KOG1094|consen  716 FTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQRPSFE  795 (807)
T ss_pred             ccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcCCCHH
Confidence                                                             0145678999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 044888          108 DVLCNLGLA  116 (154)
Q Consensus       108 ~v~~~L~~~  116 (154)
                      ++...|+..
T Consensus       796 ~lh~~lq~~  804 (807)
T KOG1094|consen  796 QLHLFLQED  804 (807)
T ss_pred             HHHHHHHHh
Confidence            999988764

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.70  E-value=1.5e-16  Score=115.25  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee-eecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC-CYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~g~~~~~~~~~~~---   77 (154)
                      +++.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++.......... ....+...+++||.+.   
T Consensus       108 ~~~~~~~~l~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  184 (270)
T cd05056         108 SLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRR  184 (270)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeccccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCC
Confidence            45678999999999999   5569999999999999999999999999886543210000 0000011122222110   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++..+.+++.+||..+|++||++.+++..|+.
T Consensus       185 ~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~  264 (270)
T cd05056         185 FTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSD  264 (270)
T ss_pred             CCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence                                                      02234567899999999999999999999999999998


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +...
T Consensus       265 ~~~~  268 (270)
T cd05056         265 ILQE  268 (270)
T ss_pred             HHhc
Confidence            7654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.69  E-value=5.5e-17  Score=117.47  Aligned_cols=106  Identities=26%  Similarity=0.361  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ...++.|++.||.|||+   .+++|+|+++.||+++.++.++++|||++..............|+..+++||.+.     
T Consensus       113 ~~~~~~qi~~~l~~LH~---~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  189 (272)
T cd06637         113 IAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENP  189 (272)
T ss_pred             HHHHHHHHHHHHHHHHH---CCCccCCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhccccCc
Confidence            45688999999999994   5699999999999999999999999999875433221112223444444444331     


Q ss_pred             ----------------------CC-----------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ----------------------GK-----------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ----------------------~~-----------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                            +.                       .+..++..+.+++.+||+.+|.+||++.++++
T Consensus       190 ~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         190 DATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence                                  00                       11234578999999999999999999999975

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.69  E-value=2.1e-16  Score=115.08  Aligned_cols=115  Identities=22%  Similarity=0.343  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeee--cccccccccCcc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCY--QSGTLGLVVDPF----   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~--~~g~~~~~~~~~----   75 (154)
                      ..++++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||+++...........  ..+...++.||.    
T Consensus       110 ~~~~~~~qi~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  186 (279)
T cd05057         110 YLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHR  186 (279)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcC
Confidence            35778999999999999   466999999999999999999999999988765321110000  000111111111    


Q ss_pred             ------------------cc-C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           76 ------------------LR-G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        76 ------------------~~-~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                        +. +                      ..+..+...+.+++.+||..+|..||++.+++..|+
T Consensus       187 ~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~  266 (279)
T cd05057         187 IYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFS  266 (279)
T ss_pred             CcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence                              10 1                      123345678899999999999999999999999999


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      .+...
T Consensus       267 ~~~~~  271 (279)
T cd05057         267 KMARD  271 (279)
T ss_pred             HHHhC
Confidence            88653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.69  E-value=8.8e-17  Score=115.24  Aligned_cols=108  Identities=25%  Similarity=0.317  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +.++++.|++.||.|||   ..+++|+||++.||+++.++.++++|||+++.............+...+++||...+   
T Consensus       102 ~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  178 (256)
T cd08529         102 QVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPY  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCC
Confidence            34678999999999999   566999999999999999999999999987765432111111122223333332111   


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                               ..+...+..+.+++.+||+.+|++||++.++++.
T Consensus       179 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         179 NEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             CCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence                                                     1122446789999999999999999999999853

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.69  E-value=3.5e-17  Score=118.12  Aligned_cols=50  Identities=34%  Similarity=0.537  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      -+++.|++.|+.|+|   +..++|||+||.|||+..++.+|+||||+++.+..
T Consensus       104 k~~l~Q~l~ai~~cH---k~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~  153 (396)
T KOG0593|consen  104 KKYLYQLLKAIHFCH---KNNCIHRDIKPENILITQNGVVKLCDFGFARTLSA  153 (396)
T ss_pred             HHHHHHHHHHhhhhh---hcCeecccCChhheEEecCCcEEeccchhhHhhcC
Confidence            367899999999999   55699999999999999999999999999998863

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.69  E-value=1.1e-16  Score=116.78  Aligned_cols=107  Identities=25%  Similarity=0.271  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      .+..++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++..............++..+++||.+.    
T Consensus       104 ~~~~~~~qi~~~L~~LH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  180 (282)
T cd06643         104 QIRVVCKQTLEALNYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETS  180 (282)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEccCCCEEEccccccccccccccccccccccccccCHhhccccCC
Confidence            35678999999999999   55699999999999999999999999998865432111111112333333333220    


Q ss_pred             -----------------------C------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 -----------------------G------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 -----------------------~------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                             +                        ..+...+.++.+++.+||+.+|++||++.+++
T Consensus       181 ~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  260 (282)
T cd06643         181 KDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLL  260 (282)
T ss_pred             CCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence                                   0                        11223567899999999999999999999986


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      .
T Consensus       261 ~  261 (282)
T cd06643         261 Q  261 (282)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.69  E-value=1.4e-16  Score=117.61  Aligned_cols=112  Identities=22%  Similarity=0.278  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~--   77 (154)
                      +.+.++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||+++........  .....++..+++||.+.  
T Consensus       142 ~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  218 (302)
T cd05055         142 DLLSFSYQVAKGMAFLA---SKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNC  218 (302)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccC
Confidence            45778999999999999   556999999999999999999999999998754321110  00001112222222110  


Q ss_pred             ---------------------C-----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 ---------------------G-----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 ---------------------~-----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                           +                       ..+...+.++.+++.+||+.+|++||++.+|++.|
T Consensus       219 ~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l  298 (302)
T cd05055         219 VYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLI  298 (302)
T ss_pred             CCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence                                 0                       11223467889999999999999999999999999


Q ss_pred             HHH
Q 044888          114 GLA  116 (154)
Q Consensus       114 ~~~  116 (154)
                      +..
T Consensus       299 ~~~  301 (302)
T cd05055         299 GKQ  301 (302)
T ss_pred             Hhh
Confidence            864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.69  E-value=3.9e-17  Score=121.65  Aligned_cols=106  Identities=20%  Similarity=0.197  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+    
T Consensus        97 ~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  173 (323)
T cd05595          97 ARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYG  173 (323)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCC
Confidence            4568899999999999   556999999999999999999999999988653222111122346666666665532    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~  111 (154)
                                                             ..+...+.++.+++..||+.||++||     ++.++++
T Consensus       174 ~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         174 RAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             chhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence                                                   12334567888999999999999998     7888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.69  E-value=1.2e-16  Score=114.67  Aligned_cols=108  Identities=24%  Similarity=0.362  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +..+++.+++.|+.|||   ..+++|+|++|.||+++.++.++++|||++..............++..+++||.+.+   
T Consensus       103 ~~~~~~~~l~~~l~~lH---~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  179 (257)
T cd08223         103 QVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPY  179 (257)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCC
Confidence            35788999999999999   566999999999999999999999999988655321111111122333333332211   


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                               ..+...+..+.+++.+||+.+|++||++.+++..
T Consensus       180 ~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         180 NYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             CchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence                                                     1223456789999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.69  E-value=5.9e-17  Score=120.35  Aligned_cols=103  Identities=24%  Similarity=0.261  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus        98 ~~~~~~qi~~al~~LH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (316)
T cd05592          98 ARFYAAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYN  174 (316)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCC
Confidence            3567899999999999   556999999999999999999999999998754322222223345666666655432    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                             ..+...+.++.+++..||+.+|++||++.+
T Consensus       175 ~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~  243 (316)
T cd05592         175 ESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRWISKEAKDCLSKLFERDPTKRLGVDG  243 (316)
T ss_pred             CcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCChH
Confidence                                                   122335677889999999999999999864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.69  E-value=3.9e-17  Score=121.27  Aligned_cols=103  Identities=22%  Similarity=0.176  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.+||+|||++..............|+..+++||.+.+    
T Consensus       100 ~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  176 (318)
T cd05582         100 VKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHT  176 (318)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCC
Confidence            4678999999999999   556999999999999999999999999998765332111112233444444433211    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                             ..+...+..+.+++..||+.||++||++.+
T Consensus       177 ~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         177 QSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence                                                   123345678899999999999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.69  E-value=7.5e-17  Score=118.01  Aligned_cols=106  Identities=26%  Similarity=0.291  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +.+.++.|++.||.|||   ..+++||||+|.||+++.++.++++|||++........ .....|+..+++||.+.+   
T Consensus       103 ~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~  178 (285)
T cd05631         103 RAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET-VRGRVGTVGYMAPEVINNEKY  178 (285)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe-ecCCCCCCCccCHhhhcCCCC
Confidence            35678899999999999   55699999999999999999999999999876532211 112234555555554322   


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MGDV  109 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~~v  109 (154)
                                                                  ..+...+.++.+|+.+||+.||++||+     +.++
T Consensus       179 ~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~  258 (285)
T cd05631         179 TFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGV  258 (285)
T ss_pred             CcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHH
Confidence                                                        122235667889999999999999997     6777


Q ss_pred             HH
Q 044888          110 LC  111 (154)
Q Consensus       110 ~~  111 (154)
                      ++
T Consensus       259 ~~  260 (285)
T cd05631         259 KQ  260 (285)
T ss_pred             hc
Confidence            64

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.69  E-value=1.7e-16  Score=114.83  Aligned_cols=112  Identities=24%  Similarity=0.378  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee---eeccc--ccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC---CYQSG--TLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~~~~g--~~~~~~~~~~   76 (154)
                      +++.++.|++.||.|||   ..+++|+|+++.|++++.++.++++|||++..........   ....+  ...++.||.+
T Consensus       107 ~~~~i~~~l~~al~~lH---~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (269)
T cd05065         107 QLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAI  183 (269)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHh
Confidence            45788999999999999   5669999999999999999999999999876543211000   00000  0011111111


Q ss_pred             ---------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           77 ---------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        77 ---------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                   ..+.+.+++..+.+++..||+.+|.+||++.+|+.
T Consensus       184 ~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         184 AYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             ccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                                         01223456778999999999999999999999999


Q ss_pred             HHHHH
Q 044888          112 NLGLA  116 (154)
Q Consensus       112 ~L~~~  116 (154)
                      .|+.+
T Consensus       264 ~l~~~  268 (269)
T cd05065         264 TLDKM  268 (269)
T ss_pred             HHHhh
Confidence            98865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=4.5e-17  Score=123.13  Aligned_cols=50  Identities=34%  Similarity=0.486  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ..|+.||.+||.|+|   ..|+.|||+||+|||+..+..+||+|||+++....
T Consensus       113 rnim~QilqGL~hiH---k~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~S  162 (538)
T KOG0661|consen  113 RNIMYQILQGLAHIH---KHGFFHRDLKPENILISGNDVIKIADFGLAREVRS  162 (538)
T ss_pred             HHHHHHHHHHHHHHH---hcCcccccCChhheEecccceeEeccccccccccc
Confidence            478999999999999   67799999999999999999999999999988754

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.69  E-value=1.8e-16  Score=113.39  Aligned_cols=110  Identities=24%  Similarity=0.375  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee-eecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC-CYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~g~~~~~~~~~~----   76 (154)
                      +.+.++.|++.||.|+|   ..+++|+|++|.||+++.++.++++|||++.......... ....+...+++||.+    
T Consensus        94 ~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  170 (250)
T cd05085          94 QLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGR  170 (250)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCC
Confidence            45788999999999999   5669999999999999999999999999886432211000 000001111111111    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                               ....+...+..+.+++.+||+.+|++||++.++++.|.
T Consensus       171 ~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         171 YSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence                                                     11223456789999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.68  E-value=1e-16  Score=119.35  Aligned_cols=106  Identities=26%  Similarity=0.253  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus       102 ~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  178 (323)
T cd05584         102 ACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHG  178 (323)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCC
Confidence            3457889999999999   566999999999999999999999999998654322222222345566666655422    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~  111 (154)
                                                             ..+...+..+.+++.+||+.+|++||     ++.+++.
T Consensus       179 ~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         179 KAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             CcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence                                                   12334567889999999999999999     7777765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.68  E-value=6.3e-17  Score=120.39  Aligned_cols=101  Identities=23%  Similarity=0.192  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus        98 ~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (320)
T cd05590          98 ARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYG  174 (320)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCC
Confidence            4568899999999999   566999999999999999999999999998654222111222345566666654432    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                             ..+...+.++.+++..||+.||++||+.
T Consensus       175 ~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         175 PSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             CccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHCCCC
Confidence                                                   1122356678899999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.68  E-value=1.5e-16  Score=114.31  Aligned_cols=111  Identities=28%  Similarity=0.436  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce----------eeeccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL----------CCYQSG-----   66 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~----------~~~~~g-----   66 (154)
                      ++++++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||.+.........          .....+     
T Consensus       101 ~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~  177 (254)
T cd05083         101 QLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSK  177 (254)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhccCCcCch
Confidence            45778999999999999   566999999999999999999999999987653221000          000000     


Q ss_pred             ----ccccccCccc-----------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           67 ----TLGLVVDPFL-----------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        67 ----~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                          .++.++-+.+                       ....+...+..+.+++.+||+.+|++||++.+|+..|++
T Consensus       178 ~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         178 SDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence                0010111110                       112233456789999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.68  E-value=1.9e-16  Score=114.53  Aligned_cols=110  Identities=24%  Similarity=0.322  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ++++++.|++.||.|||+  ..+++|+|+++.||+++.++.++++|||.+....... ......++..++.|+.+.+   
T Consensus       114 ~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~  190 (269)
T cd08528         114 RIWNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES-KLTSVVGTILYSCPEIVKNEPY  190 (269)
T ss_pred             HHHHHHHHHHHHHHHhcc--CCceeecCCCHHHEEECCCCcEEEecccceeeccccc-ccccccCcccCcChhhhcCCCC
Confidence            357789999999999994  2459999999999999999999999999986544321 1111122333333322211   


Q ss_pred             -----------------------------------------C-CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 -----------------------------------------K-IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 -----------------------------------------~-~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                               + .....+..+.+++.+||+.||++||++.||..+++
T Consensus       191 ~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         191 GEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             chHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence                                                     0 11134678999999999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.68  E-value=7.3e-17  Score=116.61  Aligned_cols=109  Identities=26%  Similarity=0.280  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............++..+++||.+.    
T Consensus       107 ~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  183 (267)
T cd06646         107 QIAYVCRETLQGLAYLH---SKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKN  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccccC
Confidence            34678899999999999   55699999999999999999999999998875432211111112222222222210    


Q ss_pred             ---------------------C-----------------------C---CCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 ---------------------G-----------------------K---IDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 ---------------------~-----------------------~---~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                           +                       .   .....+..+.+++.+||+.+|++||++.+|+
T Consensus       184 ~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il  263 (267)
T cd06646         184 GGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLL  263 (267)
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence                                 0                       0   0012356889999999999999999999998


Q ss_pred             HHH
Q 044888          111 CNL  113 (154)
Q Consensus       111 ~~L  113 (154)
                      +.|
T Consensus       264 ~~l  266 (267)
T cd06646         264 THL  266 (267)
T ss_pred             cCC
Confidence            643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.68  E-value=1.1e-16  Score=119.22  Aligned_cols=102  Identities=25%  Similarity=0.266  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++||||++.||+++.++.+||+|||+++.............|+..+++||.+.+   
T Consensus       102 ~~~~~~~qi~~al~~lH---~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~  178 (324)
T cd05589         102 RAVFYAACVVLGLQYLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSY  178 (324)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCC
Confidence            35678999999999999   566999999999999999999999999988653322111222345556666654432   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                              ..+...+..+.+++.+||+.||.+||++
T Consensus       179 ~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~  246 (324)
T cd05589         179 TRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSREAISIMRRLLRRNPERRLGS  246 (324)
T ss_pred             CcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCC
Confidence                                                    1233456778899999999999999953

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.68  E-value=2e-16  Score=113.60  Aligned_cols=109  Identities=25%  Similarity=0.371  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---eeeecccccccccCcccc--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---LCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~g~~~~~~~~~~~--   77 (154)
                      ...++.|++.||.|||   ..+++|+|++|.||+++.++.+|++|||++........   ......++..++.||.+.  
T Consensus        99 ~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~  175 (257)
T cd05040          99 LCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTR  175 (257)
T ss_pred             HHHHHHHHHHHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhccc
Confidence            4678899999999999   56699999999999999999999999998876543110   000011122222222110  


Q ss_pred             ---------------------C-----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 ---------------------G-----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 ---------------------~-----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                           +                       ..+...+..+.+++.+||+.+|++||++.+|+..|
T Consensus       176 ~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l  255 (257)
T cd05040         176 TFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFL  255 (257)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHh
Confidence                                 0                       12234567899999999999999999999999887


Q ss_pred             H
Q 044888          114 G  114 (154)
Q Consensus       114 ~  114 (154)
                      .
T Consensus       256 ~  256 (257)
T cd05040         256 P  256 (257)
T ss_pred             c
Confidence            5

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.68  E-value=1.8e-16  Score=115.37  Aligned_cols=110  Identities=25%  Similarity=0.287  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC---cEEEecCCCcccCCCCcceee--ecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW---VAKVSDLGLAKVGPNMLTLCC--YQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~---~~kl~dfg~~~~~~~~~~~~~--~~~g~~~~~~~~~~   76 (154)
                      ++++++.|++.||.|||   ..+++|+||+|.||+++.++   .+|++|||+++..........  .......+++||.+
T Consensus       117 ~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05036         117 DLLFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAF  193 (277)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHH
Confidence            35678999999999999   45699999999999998654   589999999875421100000  00000111111110


Q ss_pred             ---------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           77 ---------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        77 ---------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                   ....+..++..+.+++.+||+.+|++||++.+|++
T Consensus       194 ~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~  273 (277)
T cd05036         194 LDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILE  273 (277)
T ss_pred             hcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                                                         11233456778999999999999999999999999


Q ss_pred             HHH
Q 044888          112 NLG  114 (154)
Q Consensus       112 ~L~  114 (154)
                      .|+
T Consensus       274 ~l~  276 (277)
T cd05036         274 RIQ  276 (277)
T ss_pred             Hhh
Confidence            886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.68  E-value=9.8e-17  Score=119.17  Aligned_cols=105  Identities=23%  Similarity=0.235  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.++|+|||+++.............|+..+++||.+.+    
T Consensus        98 ~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (316)
T cd05620          98 ATFYAAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYT  174 (316)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCC
Confidence            4567899999999999   566999999999999999999999999988643221111222345566666655432    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH-HHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG-DVL  110 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~-~v~  110 (154)
                                                             ..+.....++.+++.+||+.||++||++. ++.
T Consensus       175 ~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         175 FSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             cccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence                                                   11223456788999999999999999985 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.68  E-value=4.6e-17  Score=126.34  Aligned_cols=104  Identities=27%  Similarity=0.356  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCCCcceeeecccccccccCccccCCCC-
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKID-   81 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-   81 (154)
                      -+|+.||..||.|||++ .+||+|||||..||+++.+ |.+||+|+|++........  ....|++..|+||.+...++ 
T Consensus       146 k~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~a--ksvIGTPEFMAPEmYEE~YnE  222 (632)
T KOG0584|consen  146 KSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHA--KSVIGTPEFMAPEMYEENYNE  222 (632)
T ss_pred             HHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhcccc--ceeccCccccChHHHhhhcch
Confidence            36899999999999998 6899999999999999755 8999999999988765332  23679999999988765221 


Q ss_pred             --------------------------------------------cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           82 --------------------------------------------PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        82 --------------------------------------------~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  .-.-.++.+|+.+|+.. .+.|||+.|++.
T Consensus       223 ~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  223 LVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             hhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhh
Confidence                                                        11234678999999999 999999999984

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.68  E-value=2.7e-16  Score=113.62  Aligned_cols=111  Identities=25%  Similarity=0.311  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-----cEEEecCCCcccCCCCcce--eeecccccccccCc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-----VAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDP   74 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-----~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~   74 (154)
                      +++.++.|++.||.|||   ..+++|+|+++.||+++.+.     .++++|||+++........  .....++..+++||
T Consensus       107 ~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  183 (269)
T cd05044         107 ELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPE  183 (269)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHH
Confidence            35678999999999999   45699999999999998877     8999999988644221000  00000011111111


Q ss_pred             cc---------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           75 FL---------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        75 ~~---------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                      .+                                             ....+...+..+.+++.+||+.+|.+||++.+|
T Consensus       184 ~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  263 (269)
T cd05044         184 SLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRI  263 (269)
T ss_pred             HHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCCccCCcccchHHHHHHHHHHcCCCcccCCCHHHH
Confidence            10                                             012233567889999999999999999999999


Q ss_pred             HHHHHH
Q 044888          110 LCNLGL  115 (154)
Q Consensus       110 ~~~L~~  115 (154)
                      .+.|++
T Consensus       264 ~~~l~~  269 (269)
T cd05044         264 QEILQN  269 (269)
T ss_pred             HHHHhC
Confidence            998863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.68  E-value=1e-16  Score=117.45  Aligned_cols=49  Identities=35%  Similarity=0.561  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++..
T Consensus       105 ~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~  153 (288)
T cd07871         105 VKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAK  153 (288)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEECcCcceeec
Confidence            4567899999999999   566999999999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.68  E-value=1.2e-16  Score=113.42  Aligned_cols=50  Identities=30%  Similarity=0.497  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM   57 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~   57 (154)
                      .++.++.+|++|+|..   .|+|||+||.|+|++.++.+|++|||+++.....
T Consensus       105 ~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p  154 (318)
T KOG0659|consen  105 SYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSP  154 (318)
T ss_pred             HHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCC
Confidence            4688999999999954   4999999999999999999999999999998753

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.68  E-value=8.8e-17  Score=119.55  Aligned_cols=106  Identities=23%  Similarity=0.179  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||++..............|+..+++||.+.+    
T Consensus        98 ~~~~~~qi~~aL~~LH---~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (321)
T cd05591          98 SRFYAAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYG  174 (321)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCC
Confidence            4568899999999999   556999999999999999999999999988653221111122234555555554322    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-------CHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-------QMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-------~~~~v~~  111 (154)
                                                             ..+...+.++.+++..||+.+|++||       ++.+++.
T Consensus       175 ~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~  253 (321)
T cd05591         175 PSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQ  253 (321)
T ss_pred             CccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhc
Confidence                                                   11223467889999999999999999       6677753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=3.3e-16  Score=110.24  Aligned_cols=115  Identities=23%  Similarity=0.261  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---------eeeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---------LCCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---------~~~~~~g~~~~~~   72 (154)
                      +-+.|+.++++||++||+.. ++..|+|+||.||++...+.+++.|||.+........         ....+..++.+-+
T Consensus       128 ~iL~if~gic~gL~~lH~~~-~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRA  206 (302)
T KOG2345|consen  128 QILWIFLGICRGLEALHEKE-PPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRA  206 (302)
T ss_pred             HHHHHHHHHHHHHHHHhccC-CcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccC
Confidence            35789999999999999763 5699999999999999999999999998866543210         0000011111111


Q ss_pred             Cc--------------------------------------------------cccCCCCcchHHHHHHHHHHhhccCCCC
Q 044888           73 DP--------------------------------------------------FLRGKIDPGCFKTFTDIAKKCLADRGCD  102 (154)
Q Consensus        73 ~~--------------------------------------------------~~~~~~~~~~~~~~~~l~~~C~~~~p~~  102 (154)
                      ||                                                  .+.-+.....++.+.+++..|++.||.+
T Consensus       207 PELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l~~lik~mlqvdP~q  286 (302)
T KOG2345|consen  207 PELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQ  286 (302)
T ss_pred             chheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCccHHHHHHHHHHhcCCccc
Confidence            11                                                  1111223347889999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 044888          103 RPQMGDVLCNLGLAW  117 (154)
Q Consensus       103 RP~~~~v~~~L~~~~  117 (154)
                      ||++.+++..++.+.
T Consensus       287 RP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  287 RPTIPELLSKLDDLI  301 (302)
T ss_pred             CCCHHHHHHHHHhhc
Confidence            999999999888653

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-16  Score=125.25  Aligned_cols=98  Identities=27%  Similarity=0.268  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-------   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------   78 (154)
                      +|..|+.||+|||   .++|++||||..|||||..|++||+|||+++...........++|++.+++||.+.+       
T Consensus       473 yaAev~l~L~fLH---~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aV  549 (694)
T KOG0694|consen  473 YAAEVVLGLQFLH---ENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAV  549 (694)
T ss_pred             HHHHHHHHHHHHH---hcCceeeecchhheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchh
Confidence            5889999999999   677999999999999999999999999999887654556678899999999998865       


Q ss_pred             ------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                          .+|..++.+..+|+.+.+..+|++|-.+
T Consensus       550 DWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  550 DWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             hHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcccHHHHHHHHHHhccCcccccCC
Confidence                                                3455678889999999999999999766

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.67  E-value=8.7e-17  Score=119.69  Aligned_cols=102  Identities=25%  Similarity=0.264  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+|++|||+++.............|+..+++||.+.+    
T Consensus        98 ~~~~~~qi~~~l~~lH---~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (323)
T cd05575          98 ARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYD  174 (323)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCC
Confidence            4568899999999999   566999999999999999999999999988653221111112234455555544322    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                             ..++..+..+.+++.+|++.||.+||++.
T Consensus       175 ~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         175 RTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             ccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence                                                   12234567888999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.67  E-value=9.4e-17  Score=119.32  Aligned_cols=106  Identities=25%  Similarity=0.204  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   +.+++|+||++.||+++.++.++|+|||+++.............|+..+++||.+.+    
T Consensus        98 ~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  174 (318)
T cd05570          98 ARFYAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYG  174 (318)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCC
Confidence            4678899999999999   566999999999999999999999999988653221111112234455555554322    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH-----HHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM-----GDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~-----~~v~~  111 (154)
                                                             ..+...+..+.+++.+||+.||++||++     .+++.
T Consensus       175 ~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         175 PAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             cchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence                                                   1223456788999999999999999999     77754

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.67  E-value=1.2e-16  Score=116.66  Aligned_cols=106  Identities=25%  Similarity=0.238  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   +.+++|+||+|.||+++.++.++++|||++..............|+..+++||.+.+    
T Consensus        99 ~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  175 (280)
T cd05608          99 ACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYD  175 (280)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCC
Confidence            4678999999999999   556999999999999999999999999998654332111111233444444443321    


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVL  110 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~  110 (154)
                                                                 ..+...+..+.+++..||+.+|++||     ++.+++
T Consensus       176 ~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l  255 (280)
T cd05608         176 FSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLR  255 (280)
T ss_pred             ccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHh
Confidence                                                       11233567889999999999999999     555555


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      .
T Consensus       256 ~  256 (280)
T cd05608         256 T  256 (280)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.67  E-value=1.5e-16  Score=118.53  Aligned_cols=101  Identities=23%  Similarity=0.201  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||++..............|+..+++||.+.+    
T Consensus       103 ~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  179 (324)
T cd05587         103 AVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYG  179 (324)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCC
Confidence            4668899999999999   556999999999999999999999999988643221112223345666666665432    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                             ..+...+.++.+++.+||+.+|.+|++.
T Consensus       180 ~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         180 KSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             cccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence                                                   1233456778899999999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.67  E-value=2.3e-16  Score=114.95  Aligned_cols=49  Identities=29%  Similarity=0.474  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.++|+|||++...
T Consensus       103 ~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  151 (285)
T cd07861         103 VKSYLYQILQGILFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAF  151 (285)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEEcCCCcEEECcccceeec
Confidence            4568999999999999   566999999999999999999999999988654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.67  E-value=1.3e-16  Score=119.17  Aligned_cols=101  Identities=26%  Similarity=0.270  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus        98 ~~~i~~qi~~~l~~lH---~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (329)
T cd05618          98 ARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYG  174 (329)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCC
Confidence            4678899999999999   556999999999999999999999999988653211111111223333333333211    


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                                      ..+...+..+.+++.+||+.||++||+.
T Consensus       175 ~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         175 FSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             CccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence                                                            1233456677899999999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.67  E-value=8.7e-17  Score=119.78  Aligned_cols=105  Identities=23%  Similarity=0.228  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      ..++.|++.||.|||   ..+++||||++.||+++.++.+||+|||+++.............|+..+++||.+.+     
T Consensus        99 ~~~~~qi~~~L~~lH---~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (325)
T cd05602          99 RFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDR  175 (325)
T ss_pred             HHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCC
Confidence            457899999999999   566999999999999999999999999998653221111122335555555554322     


Q ss_pred             --------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 --------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 --------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                            ..++..+..+.+++.+|++.+|.+||+..+.+.
T Consensus       176 ~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         176 TVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             ccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHH
Confidence                                                  122345678889999999999999999875443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.67  E-value=1.6e-16  Score=118.10  Aligned_cols=105  Identities=25%  Similarity=0.243  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||++.||+++.++.+|++|||++..............|+..+++||.+.+    
T Consensus        98 ~~~~~~qi~~al~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (316)
T cd05619          98 ATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYN  174 (316)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCC
Confidence            4668999999999999   556999999999999999999999999998653221111222345555666555432    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH-HHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG-DVL  110 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~-~v~  110 (154)
                                                             ..+.....++.+++.+||+.+|++||++. ++.
T Consensus       175 ~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         175 TSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPRWLTREAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             chhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHhccCHhhcCCChHHHH
Confidence                                                   11223456788999999999999999997 553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.67  E-value=1.7e-16  Score=116.77  Aligned_cols=107  Identities=23%  Similarity=0.288  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +.+.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++..............++..+++||.+.+   
T Consensus       117 ~~~~i~~ql~~aL~~LH---~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  193 (296)
T cd06654         117 QIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY  193 (296)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCCCC
Confidence            45678999999999999   556999999999999999999999999987654321100001112222222222111   


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 ..+...+..+.+++.+||+.+|++||++.+|+.
T Consensus       194 ~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         194 GPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             CccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence                                                       112234567889999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.67  E-value=3.8e-16  Score=112.61  Aligned_cols=111  Identities=23%  Similarity=0.344  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~----   76 (154)
                      +++.++.|++.||.|||   ..+++|+||++.|++++..+.++++|||.+....... .......+...+++||.+    
T Consensus       103 ~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  179 (260)
T cd05073         103 KLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS  179 (260)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCC
Confidence            45778999999999999   5569999999999999999999999999876543210 000000011111111111    


Q ss_pred             ------------------c-C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 ------------------R-G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 ------------------~-~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                        . +                      +.+...+..+.+++.+||+.+|++||++.++.+.|+.
T Consensus       180 ~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         180 FTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             cCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                              0 0                      1223355789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.67  E-value=2.2e-16  Score=119.22  Aligned_cols=50  Identities=38%  Similarity=0.491  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      .+..|+.|++.||.|||   ..+++||||||.||+++.++.+||+|||++...
T Consensus       158 ~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~  207 (357)
T PHA03209        158 QALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQFP  207 (357)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEecCcccccc
Confidence            45788999999999999   456999999999999999999999999998653

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.67  E-value=2.5e-16  Score=114.90  Aligned_cols=106  Identities=29%  Similarity=0.313  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc------
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR------   77 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~------   77 (154)
                      ..++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............|+..+++||.+.      
T Consensus       127 ~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  203 (286)
T cd06638         127 AYILHEALMGLQHLH---VNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLD  203 (286)
T ss_pred             HHHHHHHHHHHHHHH---hCCccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhcc
Confidence            457899999999999   55699999999999999999999999999865432111111122333333333221      


Q ss_pred             ---------------------CC------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 ---------------------GK------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ---------------------~~------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                           +.                        .+...+..+.+++.+||+.+|++||++.||++.
T Consensus       204 ~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         204 STYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             ccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence                                 00                        111235678999999999999999999999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.67  E-value=3.5e-16  Score=112.02  Aligned_cols=109  Identities=25%  Similarity=0.369  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~----   76 (154)
                      .+.++.+++.||.|||   ..+++|+|++|.||+++.++.++++|||++..........  ........+..||.+    
T Consensus        95 ~~~~~~~~~~~l~~lH---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  171 (251)
T cd05041          95 LLQMSLDAAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGR  171 (251)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCC
Confidence            4678899999999999   5569999999999999999999999999886543110000  000001111111111    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                               ....+...+..+.+++.+||+.+|++||++.||++.|+
T Consensus       172 ~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         172 YTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             CCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence                                                     01123345678999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.67  E-value=1.3e-16  Score=118.67  Aligned_cols=102  Identities=22%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+   
T Consensus       102 ~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  178 (323)
T cd05616         102 HAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPY  178 (323)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCC
Confidence            35678999999999999   556999999999999999999999999998754321111222345566666655432   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                              .++...+.++.+++.+|++.+|++|++.
T Consensus       179 ~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         179 GKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             CCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence                                                    1234456788899999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.66  E-value=1.8e-16  Score=118.33  Aligned_cols=106  Identities=22%  Similarity=0.140  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|||   ..+++||||++.||+++.++.+||+|||+++...... .......|+..+++||.+.+   
T Consensus       107 ~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  183 (332)
T cd05614         107 VRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGG  183 (332)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCC
Confidence            3567889999999999   5569999999999999999999999999987542211 11112234444554443321   


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGD  108 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~  108 (154)
                                                                   ..+...+..+.+++.+||+.||++||     ++.+
T Consensus       184 ~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~  263 (332)
T cd05614         184 HGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASE  263 (332)
T ss_pred             CCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHH
Confidence                                                         11223456788999999999999999     6667


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      ++.
T Consensus       264 ~l~  266 (332)
T cd05614         264 IKE  266 (332)
T ss_pred             HHc
Confidence            764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.66  E-value=2.3e-16  Score=118.79  Aligned_cols=50  Identities=30%  Similarity=0.434  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++...
T Consensus       121 ~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~  170 (355)
T cd07874         121 MSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCCCEEEeeCcccccCC
Confidence            4568899999999999   5669999999999999999999999999987654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.66  E-value=3.8e-16  Score=112.17  Aligned_cols=110  Identities=25%  Similarity=0.248  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHhhcCC--CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGT--RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~--~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      .+.++.|++.||.|||..+  ..+++|+|+++.||+++.++.++++|||++..............++..+++||.+.+  
T Consensus       107 ~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~  186 (265)
T cd08217         107 IWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMS  186 (265)
T ss_pred             HHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCCccChhhhcCCC
Confidence            4678999999999999443  456999999999999999999999999988765442211111123333333333211  


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                ..+...+..+.+++.+||+.+|++||++.+|++.
T Consensus       187 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         187 YDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             CCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                                                      1233456789999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.66  E-value=2.8e-16  Score=112.68  Aligned_cols=106  Identities=29%  Similarity=0.365  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............++..++.||.+.+    
T Consensus       101 ~~~~~~~l~~~l~~lh---~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  177 (256)
T cd06612         101 IAAILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYN  177 (256)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCC
Confidence            4678999999999999   556999999999999999999999999988765432211111122333333332211    


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                ..+......+.+++.+||+.+|++||++.+|+.
T Consensus       178 ~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         178 NKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence                                                      011223467899999999999999999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.66  E-value=6.8e-16  Score=111.87  Aligned_cols=47  Identities=21%  Similarity=0.409  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ..++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..
T Consensus       102 ~~~~~~i~~al~~lH---~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~  148 (268)
T cd05086         102 QRMACEIAAGVTHMH---KHNFLHSDLALRNCFLTSDLTVKVGDYGIGPS  148 (268)
T ss_pred             HHHHHHHHHHHHHHH---HCCeeccCCccceEEEcCCccEEecccccccc
Confidence            467899999999999   45699999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.66  E-value=4.4e-16  Score=112.67  Aligned_cols=106  Identities=25%  Similarity=0.331  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++. ++.++++|||.+..............++..+++||.+.    
T Consensus       110 ~~~~~~qi~~al~~lH---~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  186 (268)
T cd06624         110 IIFYTKQILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPR  186 (268)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccccc
Confidence            4567889999999999   556999999999999976 67899999998765432111000111222222222210    


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  ...+.....++.+++.+||+.+|++||++.+++.
T Consensus       187 ~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         187 GYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             cCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence                                                        1123345668899999999999999999999975

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.66  E-value=1.4e-16  Score=118.69  Aligned_cols=105  Identities=26%  Similarity=0.254  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||++.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus        98 ~~~~~~qi~~al~~lH---~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (325)
T cd05604          98 ARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYD  174 (325)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCC
Confidence            4568899999999999   566999999999999999999999999998653221111112234444555444322    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                             ..++..+..+.+++..|++.+|.+||++.+.+
T Consensus       175 ~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~  245 (325)
T cd05604         175 NTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDF  245 (325)
T ss_pred             CcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCH
Confidence                                                   11234566788999999999999999886443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.66  E-value=2.2e-16  Score=117.80  Aligned_cols=49  Identities=33%  Similarity=0.529  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||+++..
T Consensus       105 ~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859         105 HQFFLYQLLRALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence            4578999999999999   556999999999999999999999999998754

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.66  E-value=3.3e-16  Score=115.47  Aligned_cols=49  Identities=33%  Similarity=0.568  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||||.||+++.++.+||+|||++...
T Consensus       105 ~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  153 (303)
T cd07869         105 VKLFLFQLLRGLSYIH---QRYILHRDLKPQNLLISDTGELKLADFGLARAK  153 (303)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECCCCcceec
Confidence            4567899999999999   566999999999999999999999999988653

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.66  E-value=5.2e-16  Score=112.85  Aligned_cols=107  Identities=25%  Similarity=0.332  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.|+.|||   ..+++|+|+++.||+++.++.++++|||++..............++..+++||.+.+    
T Consensus       103 ~~~~~~~i~~~l~~lH---~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (277)
T cd06642         103 IATILREILKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYD  179 (277)
T ss_pred             HHHHHHHHHHHHHHHh---cCCeeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCc
Confidence            4567899999999999   556999999999999999999999999988664332111111112222222222111    


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                              ......+..+.+++.+||+.+|++||++.+|+..
T Consensus       180 ~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         180 FKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             hhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence                                                    1112356778999999999999999999999874

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.66  E-value=5.1e-16  Score=111.78  Aligned_cols=107  Identities=22%  Similarity=0.330  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee---eecccccccccCccccC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC---CYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~-   78 (154)
                      ..+++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||+++.........   ....++..+++||.+.+ 
T Consensus       106 ~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  182 (263)
T cd06625         106 TRKYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGE  182 (263)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccC
Confidence            4678899999999999   5669999999999999999999999999986543210000   11122333334333221 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                  ..+...+..+.+++..||+.+|++||++.+++..
T Consensus       183 ~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         183 GYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence                                                        2233567788999999999999999999999863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.66  E-value=2.9e-16  Score=117.16  Aligned_cols=101  Identities=21%  Similarity=0.093  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.++|+|||++..............|+..|++||.+.+    
T Consensus        98 ~~~~~~qil~al~~LH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (330)
T cd05586          98 AKFYIAELVLALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGY  174 (330)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCC
Confidence            4567899999999999   556999999999999999999999999998653221111122334555555554321    


Q ss_pred             -------------------CC---------------------C-cchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 -------------------KI---------------------D-PGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 -------------------~~---------------------~-~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                         ..                     + ...+.++.+++.+||+.+|.+||+.
T Consensus       175 ~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~  243 (330)
T cd05586         175 TKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGA  243 (330)
T ss_pred             CCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHHHCCCC
Confidence                               00                     1 1235677899999999999999854

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.66  E-value=8e-16  Score=112.74  Aligned_cols=107  Identities=25%  Similarity=0.254  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +...++.|++.||.|||   ..+++|+|+++.||+++.++.++|+|||++..............++..+++||.+.    
T Consensus       111 ~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  187 (292)
T cd06644         111 QIQVICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETM  187 (292)
T ss_pred             HHHHHHHHHHHHHHHHh---cCCeeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccccc
Confidence            35678999999999999   55699999999999999999999999998765322111111112222333333221    


Q ss_pred             -----------------------C------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 -----------------------G------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 -----------------------~------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                             +                        ..+...+.++.+++.+||+.+|++||++.+++
T Consensus       188 ~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  267 (292)
T cd06644         188 KDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLL  267 (292)
T ss_pred             cCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHh
Confidence                                   0                        01123446789999999999999999999997


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      +
T Consensus       268 ~  268 (292)
T cd06644         268 E  268 (292)
T ss_pred             c
Confidence            5

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.66  E-value=2.2e-16  Score=124.47  Aligned_cols=106  Identities=24%  Similarity=0.368  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-------------------------
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-------------------------   59 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-------------------------   59 (154)
                      .++.|||.|+.||.   .+.++||||...|+++.....+||+|||+.+-++..-.                         
T Consensus       216 dya~QiA~aM~YLe---skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kF  292 (1039)
T KOG0199|consen  216 DYAMQIAKAMQYLE---SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKF  292 (1039)
T ss_pred             HHHHHHHHHHHHHh---hhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccc
Confidence            57899999999999   55599999999999999999999999999988765310                         


Q ss_pred             -------------eeeecccc----------cccccCccccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           60 -------------LCCYQSGT----------LGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        60 -------------~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                   |+.+..|.          +...+|+.-+.+.++.|++++|++|..||..+|.+||+|..|.+.+
T Consensus       293 ShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~csedIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  293 SHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             cccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence                         11111111          1112233333467889999999999999999999999999998443

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.66  E-value=5.1e-16  Score=118.63  Aligned_cols=48  Identities=35%  Similarity=0.500  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      .+.++.|++.||.|||   ..+++||||||.||+++.++.+||+|||++..
T Consensus       184 ~~~i~~qi~~aL~ylH---~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~  231 (391)
T PHA03212        184 ILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGAACF  231 (391)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCChHhEEEcCCCCEEEEeCCcccc
Confidence            5678999999999999   55699999999999999999999999999864

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.66  E-value=4.2e-16  Score=113.80  Aligned_cols=50  Identities=30%  Similarity=0.480  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++....
T Consensus       102 ~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~  151 (287)
T cd07848         102 VRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLS  151 (287)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccCccccc
Confidence            4678999999999999   5669999999999999999999999999987653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.65  E-value=2.8e-16  Score=112.78  Aligned_cols=107  Identities=22%  Similarity=0.312  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +.++++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............|+..+++||.+.    
T Consensus       102 ~~~~~~~~l~~~l~~lh---~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~  178 (256)
T cd08218         102 QILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPY  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCC
Confidence            35788999999999999   55699999999999999999999999998865433111000111222222222111    


Q ss_pred             -------------------------------------C---CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 -------------------------------------G---KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 -------------------------------------~---~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                           +   ..+...+.++.+++.+||+.+|.+||++.+|+.
T Consensus       179 ~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         179 NNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             CCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence                                                 1   123345778999999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.65  E-value=7.1e-16  Score=115.21  Aligned_cols=50  Identities=40%  Similarity=0.578  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||+.  .+++|+||+|.||+++.++.++|+|||++...
T Consensus       105 ~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  154 (331)
T cd06649         105 LGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  154 (331)
T ss_pred             HHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCcccccc
Confidence            457889999999999952  35999999999999999999999999988654

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.65  E-value=4.4e-16  Score=114.60  Aligned_cols=107  Identities=22%  Similarity=0.284  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +++.++.|++.||.|||   +.+++|+||++.||+++.++.++++|||++..............++..+++||.+.+   
T Consensus       116 ~~~~i~~~l~~al~~LH---~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  192 (296)
T cd06655         116 QIAAVCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY  192 (296)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCC
Confidence            46788999999999999   566999999999999999999999999987654322111111123333333332211   


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 ..+...+..+.+++.+||+.+|++||++.+|+.
T Consensus       193 ~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         193 GPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence                                                       112334567889999999999999999999983

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.65  E-value=3.8e-16  Score=113.07  Aligned_cols=48  Identities=29%  Similarity=0.403  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      .+.++.|++.||+|||   ..+++|+||+|.||+++.++.+|++|||++..
T Consensus       102 ~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  149 (269)
T cd05042         102 LQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALE  149 (269)
T ss_pred             HHHHHHHHHHHHHHHH---hcCEecccccHhheEecCCCcEEEeccccccc
Confidence            3578899999999999   55699999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.65  E-value=2.3e-16  Score=122.19  Aligned_cols=50  Identities=34%  Similarity=0.437  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++ .+||+|||+++...
T Consensus       172 ~~~~~~qi~~gL~yLH---~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~  222 (440)
T PTZ00036        172 VKLYSYQLCRALAYIH---SKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLL  222 (440)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEecCCcCHHHEEEcCCCCceeeeccccchhcc
Confidence            3467889999999999   55699999999999998664 69999999997653

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.65  E-value=6.2e-16  Score=110.77  Aligned_cols=109  Identities=26%  Similarity=0.324  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee-ecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC-YQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-~~~g~~~~~~~~~~~---   77 (154)
                      +...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++........... ...++..+++|+.+.   
T Consensus       104 ~~~~~~~ql~~~l~~lh---~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~  180 (258)
T smart00219      104 DLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGK  180 (258)
T ss_pred             HHHHHHHHHHHHHHHHh---cCCeeecccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCC
Confidence            35778999999999999   55699999999999999999999999999866543200000 001122222222110   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                ...+...+.++.+++.+||..+|++||++.++++.|
T Consensus       181 ~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      181 FTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence                                                      012233578899999999999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.65  E-value=5.1e-16  Score=111.76  Aligned_cols=111  Identities=24%  Similarity=0.311  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPF-----   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~-----   75 (154)
                      ++..++.|++.|+.|||   ..+++|+|+++.||+++.++.++++|||.+........ ..........+++||.     
T Consensus       104 ~~~~~~~~i~~al~~lh---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  180 (261)
T cd05034         104 QLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGR  180 (261)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCcccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCC
Confidence            35678999999999999   55699999999999999999999999998765432100 0000000000111110     


Q ss_pred             ----------------------------------------ccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           76 ----------------------------------------LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        76 ----------------------------------------~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                              .....+...+.++.+++.+||+.+|++||++.++.+.|+.
T Consensus       181 ~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         181 FTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             cCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence                                                    0112234457789999999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.65  E-value=4.7e-16  Score=111.66  Aligned_cols=108  Identities=20%  Similarity=0.289  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||   ..+++|+|+++.||+++.++.+|++|||++..............++..+.+|+.+.+   
T Consensus       102 ~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~  178 (256)
T cd08221         102 MVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKY  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCC
Confidence            34678899999999999   556999999999999999999999999988665332211111122222333322211   


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                               ..+...+.++.+++..||+.+|++||++.++++.
T Consensus       179 ~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         179 NFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             CCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence                                                     1122346788999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=2.9e-16  Score=129.29  Aligned_cols=105  Identities=26%  Similarity=0.280  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC---C---------------cceeeec
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN---M---------------LTLCCYQ   64 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~---~---------------~~~~~~~   64 (154)
                      -++++.+|+.||.|+|   +.+++||||||.||+++.+..+||+|||++.....   .               .......
T Consensus       699 ~wrLFreIlEGLaYIH---~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~  775 (1351)
T KOG1035|consen  699 AWRLFREILEGLAYIH---DQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQ  775 (1351)
T ss_pred             HHHHHHHHHHHHHHHH---hCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccc
Confidence            3678999999999999   56699999999999999999999999999987321   0               1133445


Q ss_pred             ccccccccCccccCC--------------------------------------------CC----cchHHHHHHHHHHhh
Q 044888           65 SGTLGLVVDPFLRGK--------------------------------------------ID----PGCFKTFTDIAKKCL   96 (154)
Q Consensus        65 ~g~~~~~~~~~~~~~--------------------------------------------~~----~~~~~~~~~l~~~C~   96 (154)
                      .|+..|++||.+.+.                                            .+    .+....-..++.+.+
T Consensus       776 VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yPF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll  855 (1351)
T KOG1035|consen  776 VGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYPFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLL  855 (1351)
T ss_pred             cceeeeecHHHhcccccccccchhhhHHHHHHHHHHhccCCchHHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHh
Confidence            688888888877541                                            11    122334457999999


Q ss_pred             ccCCCCCCCHHHHH
Q 044888           97 ADRGCDRPQMGDVL  110 (154)
Q Consensus        97 ~~~p~~RP~~~~v~  110 (154)
                      +.||.+|||+.|++
T Consensus       856 ~hdP~kRPtA~eLL  869 (1351)
T KOG1035|consen  856 SHDPSKRPTATELL  869 (1351)
T ss_pred             cCCCccCCCHHHHh
Confidence            99999999999986

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.65  E-value=4.2e-16  Score=113.57  Aligned_cols=50  Identities=28%  Similarity=0.472  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++....
T Consensus       101 ~~~~~~qi~~al~~LH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~  150 (284)
T cd07839         101 VKSFMFQLLKGLAFCH---SHNVLHRDLKPQNLLINKNGELKLADFGLARAFG  150 (284)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEcCCCcEEECccchhhccC
Confidence            4678999999999999   5569999999999999999999999999887543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=2.9e-16  Score=122.99  Aligned_cols=103  Identities=24%  Similarity=0.352  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-------   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------   78 (154)
                      ++.|++.||.|||   +..|+|||||..|||+..+|.++++|||++..........-.+.|+++||+|+.+.-       
T Consensus       135 vc~q~ldALn~LH---s~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~P  211 (1187)
T KOG0579|consen  135 VCYQVLDALNWLH---SQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQP  211 (1187)
T ss_pred             HHHHHHHHHHHHh---hcchhhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCC
Confidence            5789999999999   455999999999999999999999999998766544444456778888888876531       


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  -.|..+...+.++..+|+..||+.||+..++++
T Consensus       212 YDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  212 YDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             chhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence                                                        123456778999999999999999999999854

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.65  E-value=3.9e-16  Score=112.05  Aligned_cols=107  Identities=30%  Similarity=0.325  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-C--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-G--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~--   78 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.++++|||.+..............++..+.+||.+. +  
T Consensus        99 ~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  175 (260)
T PF00069_consen   99 EILKIAYQILEALAYLHS---KGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKK  175 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSS
T ss_pred             cccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            457889999999999995   5699999999999999999999999999875322222222334455555555544 1  


Q ss_pred             ----------------------CC--------------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ----------------------KI--------------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ----------------------~~--------------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                            ++                          .......+.+++..||+.+|++||++.+++
T Consensus       176 ~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~  255 (260)
T PF00069_consen  176 YTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELL  255 (260)
T ss_dssp             BSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHh
Confidence                                  00                          011137899999999999999999999997


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      +
T Consensus       256 ~  256 (260)
T PF00069_consen  256 K  256 (260)
T ss_dssp             T
T ss_pred             c
Confidence            5

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.65  E-value=3.2e-16  Score=117.03  Aligned_cols=106  Identities=25%  Similarity=0.266  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+   
T Consensus        97 ~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  173 (329)
T cd05588          97 HARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDY  173 (329)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCC
Confidence            35678999999999999   566999999999999999999999999988642211111111223334444333221   


Q ss_pred             -------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC----
Q 044888           79 -------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ----  105 (154)
Q Consensus        79 -------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~----  105 (154)
                                                                       ..+...+.++.+++.+||+.||.+||+    
T Consensus       174 ~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  253 (329)
T cd05588         174 GFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQ  253 (329)
T ss_pred             CCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCC
Confidence                                                             122334567889999999999999997    


Q ss_pred             --HHHHH
Q 044888          106 --MGDVL  110 (154)
Q Consensus       106 --~~~v~  110 (154)
                        +.+++
T Consensus       254 ~~~~~i~  260 (329)
T cd05588         254 TGFRDIK  260 (329)
T ss_pred             CCHHHHh
Confidence              56665

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.65  E-value=4.2e-16  Score=121.25  Aligned_cols=50  Identities=24%  Similarity=0.331  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +++.|+.|++.||.|||   ..+++|||||+.||+++.++.++|+|||+++..
T Consensus       261 ~~~~i~~qi~~aL~yLH---~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~  310 (461)
T PHA03211        261 QVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPEDICLGDFGAACFA  310 (461)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEEECcCCHHHEEECCCCCEEEcccCCceec
Confidence            45789999999999999   556999999999999999999999999998764

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.65  E-value=8.5e-16  Score=111.28  Aligned_cols=48  Identities=31%  Similarity=0.436  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ..+++.|++.||.|||   ..+++|+|++|.|++++.++.++++|||++..
T Consensus       102 ~~~~~~qi~~al~~lH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~  149 (269)
T cd05087         102 LQRMACEIALGLLHLH---KNNFIHSDLALRNCLLTADLTVKIGDYGLSHN  149 (269)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEECCcccccc
Confidence            3568899999999999   55699999999999999999999999998854

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.65  E-value=7.1e-16  Score=111.88  Aligned_cols=110  Identities=24%  Similarity=0.326  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC-cceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM-LTLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~-~~~~~~~~g~~~~~~~~~~----   76 (154)
                      .+..++.|++.||.|||   +.+++|+||+|.|++++.++.++++|||++...... ........++..++.||.+    
T Consensus       118 ~~~~~~~~l~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  194 (275)
T cd05046         118 QKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDD  194 (275)
T ss_pred             HHHHHHHHHHHHHHHhh---hcCcccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCC
Confidence            35778999999999999   556999999999999999999999999987643211 0000000001111111110    


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ....+..++..+.+++.+||+.+|++||++.+++..|.
T Consensus       195 ~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         195 FSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence                                                      01123456788999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=3.8e-16  Score=112.82  Aligned_cols=106  Identities=32%  Similarity=0.391  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ...++.|++.||.|||   +.+++|+||++.||+++.++.++++|||.+..............++..+++||.+.     
T Consensus       115 ~~~~~~ql~~al~~lH---~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  191 (275)
T cd06608         115 IAYILRETLRGLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQP  191 (275)
T ss_pred             HHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhcccccc
Confidence            4568899999999999   55699999999999999999999999998765433211111122233333333211     


Q ss_pred             ----------------------C------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ----------------------G------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ----------------------~------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                            +                        ..+...+..+.+++.+||..||++||++.++++
T Consensus       192 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         192 DASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             cCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence                                  0                        001124467899999999999999999999975

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.65  E-value=7.7e-16  Score=112.98  Aligned_cols=51  Identities=37%  Similarity=0.523  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ..+.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++....
T Consensus       103 ~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~  153 (298)
T cd07841         103 DIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLARSFG  153 (298)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecCCChhhEEEcCCCCEEEccceeeeecc
Confidence            35788999999999999   5569999999999999999999999999887654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.65  E-value=2.2e-16  Score=115.48  Aligned_cols=49  Identities=35%  Similarity=0.529  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      -+++.|+..||.|||   ..+|+||||||.|++++.++..|++|||+++...
T Consensus       123 k~~m~Qll~gl~~~H---~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~  171 (323)
T KOG0594|consen  123 KSFMRQLLRGLAFLH---SHGILHRDLKPQNLLISSSGVLKLADFGLARAFS  171 (323)
T ss_pred             HHHHHHHHHHHHHHH---hCCeecccCCcceEEECCCCcEeeeccchHHHhc
Confidence            467899999999999   5559999999999999999999999999998765

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.64  E-value=3.9e-16  Score=115.39  Aligned_cols=49  Identities=35%  Similarity=0.548  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||++...
T Consensus       106 ~~~~~~qi~~aL~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  154 (309)
T cd07872         106 VKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAK  154 (309)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECccccceec
Confidence            4567889999999999   566999999999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.64  E-value=3.9e-16  Score=114.87  Aligned_cols=107  Identities=23%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ++..++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++..............++..+++||.+.+   
T Consensus       116 ~~~~~~~~l~~~L~~LH---~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  192 (297)
T cd06656         116 QIAAVCRECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY  192 (297)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCC
Confidence            45678999999999999   556999999999999999999999999987654321110000111111111111100   


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 ..+...+..+.+++.+||+.+|++||++.+|+.
T Consensus       193 ~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         193 GPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                                       112334567889999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.64  E-value=8.2e-16  Score=115.97  Aligned_cols=49  Identities=31%  Similarity=0.453  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++..
T Consensus       125 ~~~~~~qi~~~L~~LH---~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876         125 MSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence            3467899999999999   556999999999999999999999999998654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.64  E-value=3.1e-16  Score=115.07  Aligned_cols=103  Identities=26%  Similarity=0.241  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||++.......   ....|+..+++||.+.+    
T Consensus       103 ~~~~~~qi~~~l~~lH---~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~  176 (291)
T cd05612         103 GLFYASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRT---WTLCGTPEYLAPEVIQSKGHN  176 (291)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCc---ccccCChhhcCHHHHcCCCCC
Confidence            4568899999999999   5669999999999999999999999999987653321   11234445555544322    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~~v~~  111 (154)
                                                             ..+......+.+++.+||+.||.+||+     +.+++.
T Consensus       177 ~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  253 (291)
T cd05612         177 KAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKN  253 (291)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhc
Confidence                                                   123344667889999999999999995     777663

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.64  E-value=5.5e-16  Score=113.14  Aligned_cols=50  Identities=36%  Similarity=0.555  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+|++|.||+++.++.+|++|||++....
T Consensus       110 ~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~  159 (288)
T cd07863         110 IKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGQVKLADFGLARIYS  159 (288)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccCcccccc
Confidence            4678999999999999   5569999999999999999999999999987643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.64  E-value=3.6e-16  Score=116.21  Aligned_cols=102  Identities=25%  Similarity=0.228  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus        98 ~~~~~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (321)
T cd05603          98 ARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYD  174 (321)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCC
Confidence            3457899999999999   566999999999999999999999999988653221111112234444555444321    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                             ..+......+.+++..|++.+|.+||+..
T Consensus       175 ~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         175 RTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence                                                   12234566788999999999999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.64  E-value=7.8e-16  Score=112.67  Aligned_cols=106  Identities=28%  Similarity=0.307  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............++..+++||.+.     
T Consensus       130 ~~~~~~qi~~al~~lH---~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  206 (291)
T cd06639         130 ISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQY  206 (291)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCc
Confidence            4668999999999999   55699999999999999999999999998765432110001112222233332210     


Q ss_pred             ----------------------C------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ----------------------G------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ----------------------~------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                            +                        ..+......+.+++.+||+.+|++||++.+++.
T Consensus       207 ~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         207 DYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             ccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence                                  0                        011223456889999999999999999999975

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.64  E-value=1e-15  Score=109.92  Aligned_cols=108  Identities=25%  Similarity=0.387  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce-eeecccccccccCcccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL-CCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~g~~~~~~~~~~~----   77 (154)
                      ...++.|++.|+.|||   ..+++|+|+++.|++++.++.++++|||++......... .....++..+++|+.+.    
T Consensus       102 ~~~~~~~l~~~l~~lH---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~  178 (256)
T cd05112         102 LLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKY  178 (256)
T ss_pred             HHHHHHHHHHHHHHHH---HCCccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCc
Confidence            4678899999999999   455999999999999999999999999987643221000 00000111122221110    


Q ss_pred             -------------------C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 -------------------G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 -------------------~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                         +                      ..+...+..+.+|+.+||+.+|++||++.+|++.|
T Consensus       179 ~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         179 SSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             ChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence                               0                      11223567899999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.64  E-value=3.9e-16  Score=116.55  Aligned_cols=102  Identities=26%  Similarity=0.266  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      ..++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++.......   ....|+..+++||.+.+     
T Consensus       121 ~~~~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~  194 (329)
T PTZ00263        121 KFYHAELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT---FTLCGTPEYLAPEVIQSKGHGK  194 (329)
T ss_pred             HHHHHHHHHHHHHHH---HCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc---ceecCChhhcCHHHHcCCCCCC
Confidence            457889999999999   5669999999999999999999999999987654321   11234445555544322     


Q ss_pred             --------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HHHHHH
Q 044888           79 --------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MGDVLC  111 (154)
Q Consensus        79 --------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~~v~~  111 (154)
                                                            ..+...+..+.+++..||+.||.+||+     +.+++.
T Consensus       195 ~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  270 (329)
T PTZ00263        195 AVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKN  270 (329)
T ss_pred             cceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence                                                  122234567889999999999999986     577663

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.64  E-value=5.6e-16  Score=112.96  Aligned_cols=108  Identities=25%  Similarity=0.257  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      .+.++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++........ .....|+..+++||.+.+    
T Consensus        97 ~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~  172 (277)
T cd05607          97 VIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT-ITQRAGTNGYMAPEILKEEPYS  172 (277)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce-eeccCCCCCccCHHHHccCCCC
Confidence            4668899999999999   56699999999999999999999999998865433211 111223333433333211    


Q ss_pred             ------------------C--------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 ------------------K--------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 ------------------~--------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                        .                          .....+.++.+++..||+.||++||++.|+++.+.
T Consensus       173 ~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~  252 (277)
T cd05607         173 YPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPR  252 (277)
T ss_pred             CchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhhh
Confidence                              0                          00134667899999999999999999988764433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.64  E-value=7e-16  Score=111.37  Aligned_cols=106  Identities=25%  Similarity=0.290  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc------eeeecccccccccCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT------LCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~------~~~~~~g~~~~~~~~~~   76 (154)
                      ...++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||+++.......      ......++..+++|+.+
T Consensus       108 ~~~~~~~l~~~l~~lH---~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~  184 (267)
T cd06628         108 VRNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVV  184 (267)
T ss_pred             HHHHHHHHHHHHHHHH---hcCcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHh
Confidence            4578999999999999   55699999999999999999999999998766542100      00011122233333221


Q ss_pred             c--------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           77 R--------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        77 ~--------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .                                            ...+...+..+.+++.+||+.+|.+||++.+|++
T Consensus       185 ~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         185 KQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             ccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            1                                            1223446778899999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.64  E-value=5.2e-16  Score=114.04  Aligned_cols=108  Identities=21%  Similarity=0.267  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++..............++..+++||.+.+   
T Consensus       119 ~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  195 (292)
T cd06658         119 QIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPY  195 (292)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCC
Confidence            35678999999999999   456999999999999999999999999988654322211111223333444333211   


Q ss_pred             -------------------C------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -------------------K------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -------------------~------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                         .                        .....+..+.+++..||+.+|.+||++.++++.
T Consensus       196 ~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         196 GTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence                               0                        011235568889999999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.64  E-value=5.3e-16  Score=113.00  Aligned_cols=106  Identities=28%  Similarity=0.349  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............|+..+++||.+.     
T Consensus       123 ~~~~~~qi~~al~~LH---~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~  199 (282)
T cd06636         123 IAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENP  199 (282)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCc
Confidence            4567889999999999   45699999999999999999999999998765432111111122333344443321     


Q ss_pred             ----------------------C-----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ----------------------G-----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ----------------------~-----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                            +                       ......+..+.+++.+||+.+|.+||++.|++.
T Consensus       200 ~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         200 DATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence                                  0                       001135678999999999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.64  E-value=5.8e-16  Score=114.00  Aligned_cols=108  Identities=21%  Similarity=0.245  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +.+.++.|++.||.|||   +.+++|+|+++.||+++.++.++++|||++..............++..+++||.+.+   
T Consensus       118 ~~~~~~~qi~~~L~~LH---~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  194 (297)
T cd06659         118 QIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPY  194 (297)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCC
Confidence            35678999999999999   556999999999999999999999999988654332111112233444444443221   


Q ss_pred             -------------------C------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -------------------K------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -------------------~------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                         .                        .....+..+.+++..||+.+|++||++.++++.
T Consensus       195 ~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         195 GTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence                               0                        011345678899999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.64  E-value=8.4e-16  Score=112.54  Aligned_cols=50  Identities=26%  Similarity=0.412  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~   54 (154)
                      ....++.|++.||.|||   ..+++|+|+++.||+++. ++.++++|||++...
T Consensus       111 ~~~~~~~qi~~~L~~LH---~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~  161 (295)
T cd07837         111 TIKSFMYQLLKGVAHCH---KHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAF  161 (295)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEecCCCeEEEeecccceec
Confidence            35678999999999999   566999999999999998 889999999987654

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.64  E-value=1.6e-15  Score=127.08  Aligned_cols=115  Identities=23%  Similarity=0.277  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcc------
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPF------   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~------   75 (154)
                      ++.+++.|++.||.|||+.+.++++|||++|.||+++.+...++. |+.........    ...++..|++||.      
T Consensus       781 ~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~----~~~~t~~y~aPE~~~~~~~  855 (968)
T PLN00113        781 RRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDT----KCFISSAYVAPETRETKDI  855 (968)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCC----CccccccccCcccccCCCC
Confidence            578899999999999998767789999999999999988877765 44332211100    0011112222221      


Q ss_pred             -----------------------------------------------------ccC--CCCcchHHHHHHHHHHhhccCC
Q 044888           76 -----------------------------------------------------LRG--KIDPGCFKTFTDIAKKCLADRG  100 (154)
Q Consensus        76 -----------------------------------------------------~~~--~~~~~~~~~~~~l~~~C~~~~p  100 (154)
                                                                           +..  ..+.....++.+++.+||+.+|
T Consensus       856 ~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P  935 (968)
T PLN00113        856 TEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDP  935 (968)
T ss_pred             CcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCc
Confidence                                                                 111  1122345578899999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhcC
Q 044888          101 CDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus       101 ~~RP~~~~v~~~L~~~~~~~~  121 (154)
                      ++||+|.||++.|+.+.+...
T Consensus       936 ~~RPt~~evl~~L~~~~~~~~  956 (968)
T PLN00113        936 TARPCANDVLKTLESASRSSS  956 (968)
T ss_pred             hhCcCHHHHHHHHHHhhcccc
Confidence            999999999999998876443

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.64  E-value=1.1e-15  Score=113.24  Aligned_cols=49  Identities=35%  Similarity=0.592  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe----cCCCcEEEecCCCcccCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill----~~~~~~kl~dfg~~~~~~   55 (154)
                      ..++.|++.||.|||   ..+++||||||.||++    +.++.+|++|||+++...
T Consensus       111 ~~i~~qi~~al~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~  163 (317)
T cd07868         111 KSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN  163 (317)
T ss_pred             HHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccC
Confidence            468999999999999   5569999999999999    455789999999987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.64  E-value=5.2e-16  Score=115.78  Aligned_cols=103  Identities=24%  Similarity=0.233  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .+..++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+   
T Consensus        97 ~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  173 (327)
T cd05617          97 HARFYAAEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEY  173 (327)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCC
Confidence            35678999999999999   556999999999999999999999999988653221111112234444554444322   


Q ss_pred             -----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 -----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 -----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                     ..+...+..+.+++.+||+.||++|+++.
T Consensus       174 ~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~  249 (327)
T cd05617         174 GFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQ  249 (327)
T ss_pred             CchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCC
Confidence                                                           11223456788999999999999999853

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.63  E-value=1.1e-15  Score=111.38  Aligned_cols=51  Identities=29%  Similarity=0.442  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ++..++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++....
T Consensus       101 ~~~~~~~ql~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  151 (286)
T cd07847         101 LIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQGQIKLCDFGFARILT  151 (286)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCceecCCChhhEEEcCCCcEEECccccceecC
Confidence            46788999999999999   5669999999999999999999999999987653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.63  E-value=1.6e-15  Score=110.41  Aligned_cols=107  Identities=24%  Similarity=0.319  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++..............++..+++||.+.+    
T Consensus       103 ~~~~~~~l~~~l~~lh---~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~  179 (277)
T cd06640         103 IATMLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYD  179 (277)
T ss_pred             HHHHHHHHHHHHHHHH---hCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCc
Confidence            3567899999999999   556999999999999999999999999988655332111111112222333322211    


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                              ..+...+..+.+++.+||+.+|++||++.+++..
T Consensus       180 ~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         180 SKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence                                                    1122456788999999999999999999999765

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.63  E-value=8.4e-16  Score=116.49  Aligned_cols=49  Identities=41%  Similarity=0.628  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++...
T Consensus       105 ~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~  153 (372)
T cd07853         105 VKVFLYQILRGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVE  153 (372)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeCCCCChHHEEECCCCCEEeccccceeec
Confidence            4567899999999999   556999999999999999999999999998754

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=6.9e-16  Score=120.81  Aligned_cols=106  Identities=21%  Similarity=0.272  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ..+++.||..|+.|+|.   ..|.||||||.|+|++.+..+||+|||++....++ ..-...+|++.|.+||.+.|    
T Consensus       114 aa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~g-klLeTSCGSPHYA~PEIV~G~pYd  189 (786)
T KOG0588|consen  114 AAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNNIKIADFGMASLEVPG-KLLETSCGSPHYAAPEIVSGRPYD  189 (786)
T ss_pred             HHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccCEeeeccceeecccCC-ccccccCCCcccCCchhhcCCCCC
Confidence            45789999999999994   55999999999999999988999999999876553 33445689999999998876    


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                              ..|.+.+.+..+|+.+++..||++|-|+.||.+.
T Consensus       190 G~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kH  263 (786)
T KOG0588|consen  190 GRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEILKH  263 (786)
T ss_pred             CCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHHHhhC
Confidence                                                    3455677888899999999999999999999864

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.63  E-value=6.5e-16  Score=115.11  Aligned_cols=103  Identities=22%  Similarity=0.215  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+   
T Consensus       102 ~~~~i~~qi~~al~~lH---~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  178 (323)
T cd05615         102 QAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPY  178 (323)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCC
Confidence            35678999999999999   556999999999999999999999999998754322111222335556666554432   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                              ..+...+.++.+++.+||+.+|.+|++..
T Consensus       179 ~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05615         179 GKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCG  247 (323)
T ss_pred             CCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHhhCCCCC
Confidence                                                    12334567788999999999999999853

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.63  E-value=1e-15  Score=111.54  Aligned_cols=50  Identities=34%  Similarity=0.517  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +.+.++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++...
T Consensus       101 ~~~~~~~~i~~~l~~LH---~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~  150 (286)
T cd07846         101 RVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTL  150 (286)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCcEEEEeeeeeeec
Confidence            45778999999999999   556999999999999999999999999987654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.63  E-value=5.1e-16  Score=111.67  Aligned_cols=68  Identities=29%  Similarity=0.348  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      -+|.||+.||+|||   ...+++|||||.|+|+|++|.+|+.|||+++.+...   .+..+|++.|++||.+..
T Consensus       148 FYAAeivlAleylH---~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r---T~TlCGTPeYLAPEii~s  215 (355)
T KOG0616|consen  148 FYAAEIVLALEYLH---SLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR---TWTLCGTPEYLAPEIIQS  215 (355)
T ss_pred             HHHHHHHHHHHHHH---hcCeeeccCChHHeeeccCCcEEEEeccceEEecCc---EEEecCCccccChHHhhc
Confidence            36899999999999   555999999999999999999999999999988653   556789999999998754

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.63  E-value=1e-15  Score=115.69  Aligned_cols=50  Identities=30%  Similarity=0.434  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++...
T Consensus       128 ~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  177 (364)
T cd07875         128 MSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  177 (364)
T ss_pred             HHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEECCCCcEEEEeCCCccccC
Confidence            4568899999999999   5569999999999999999999999999987654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=8.2e-16  Score=115.32  Aligned_cols=50  Identities=30%  Similarity=0.339  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++....
T Consensus       103 ~~~i~~qi~~aL~~LH---~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  152 (350)
T cd05573         103 ARFYIAELVLALDSVH---KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMN  152 (350)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEeecCCCCccCc
Confidence            4568899999999999   5669999999999999999999999999987654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.63  E-value=1.7e-15  Score=110.39  Aligned_cols=50  Identities=26%  Similarity=0.436  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++....
T Consensus       102 ~~~~~~~i~~~l~~lh---~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~  151 (284)
T cd07860         102 IKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG  151 (284)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEeeccchhhcc
Confidence            4678999999999999   5569999999999999999999999999886543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.62  E-value=1.5e-15  Score=111.30  Aligned_cols=52  Identities=31%  Similarity=0.449  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...+++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++.....
T Consensus       107 ~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  158 (293)
T cd07843         107 EVKCLMLQLLSGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREYGS  158 (293)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCcEEEeecCceeeccC
Confidence            35678999999999999   55699999999999999999999999998876543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.62  E-value=1e-15  Score=110.55  Aligned_cols=107  Identities=22%  Similarity=0.225  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +.+.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++..............|+..+++||.+.    
T Consensus       107 ~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  183 (267)
T cd06645         107 QIAYVSRETLQGLYYLH---SKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERK  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccccC
Confidence            34678899999999999   55699999999999999999999999998765432211111223334444444321    


Q ss_pred             ---------------------CCC--------------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 ---------------------GKI--------------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 ---------------------~~~--------------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                           +..                          ....+..+.+++.+||+.+|++||++.+|+
T Consensus       184 ~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll  263 (267)
T cd06645         184 GGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLL  263 (267)
T ss_pred             CCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHh
Confidence                                 000                          012345688999999999999999999987


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      .
T Consensus       264 ~  264 (267)
T cd06645         264 Q  264 (267)
T ss_pred             c
Confidence            5

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=1.6e-15  Score=109.04  Aligned_cols=106  Identities=27%  Similarity=0.330  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+..............++..+++||.+.     
T Consensus       103 ~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~  179 (262)
T cd06613         103 IAYVCRETLKGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKG  179 (262)
T ss_pred             HHHHHHHHHHHHHHHH---hCCceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccccC
Confidence            4578999999999999   55699999999999999999999999998765432211111111222222222211     


Q ss_pred             --------------------CC--------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 --------------------GK--------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 --------------------~~--------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                          +.                          .....+.++.+++.+||+.+|..||++.+|+.
T Consensus       180 ~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         180 GYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                                00                          01123567889999999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=9.8e-16  Score=121.03  Aligned_cols=103  Identities=28%  Similarity=0.417  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccC------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG------   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------   78 (154)
                      +-.||.+||.|||   ...|+|||+|..|+|++ ..|.+||+|||.++.+..-....-.+.|++.||+||.+..      
T Consensus       680 YtkQILeGLkYLH---en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG  756 (1226)
T KOG4279|consen  680 YTKQILEGLKYLH---ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYG  756 (1226)
T ss_pred             HHHHHHHHhhhhh---hcceeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCC
Confidence            3689999999999   55599999999999997 5689999999999887653334445678888888877642      


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                +.|.+.+.+...++.+|...+|.+||++.+++.
T Consensus       757 ~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  757 KAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             chhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence                                                      345667888899999999999999999999974

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.62  E-value=1.6e-15  Score=113.61  Aligned_cols=51  Identities=31%  Similarity=0.531  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+|++|||++.....
T Consensus       120 ~~~i~~qi~~aL~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~  170 (343)
T cd07878         120 VQFLIYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDCELRILDFGLARQADD  170 (343)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecccCChhhEEECCCCCEEEcCCccceecCC
Confidence            4568999999999999   55699999999999999999999999999876543

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.62  E-value=1.5e-15  Score=110.66  Aligned_cols=50  Identities=28%  Similarity=0.458  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ++++++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||.+...
T Consensus       100 ~~~~~~~~i~~~L~~lH---~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~  149 (283)
T cd07835         100 LIKSYLYQLLQGIAYCH---SHRVLHRDLKPQNLLIDREGALKLADFGLARAF  149 (283)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCcEEEeeccccccc
Confidence            45788999999999999   456999999999999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.62  E-value=1.1e-15  Score=111.76  Aligned_cols=106  Identities=21%  Similarity=0.276  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++..............|+..+++||.+.+    
T Consensus       117 ~~~~~~ql~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  193 (285)
T cd06648         117 IATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYG  193 (285)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCC
Confidence            4678999999999999   556999999999999999999999999987654322111111122333333322211    


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                ..+...+..+.+++.+||+.+|++||++.++++
T Consensus       194 ~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         194 TEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             CcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence                                                      001124578999999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.62  E-value=1.6e-15  Score=110.51  Aligned_cols=105  Identities=23%  Similarity=0.371  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   +.+++|+||++.||+++.++.++++|||++........  ....++..+++||.+.+    
T Consensus        97 ~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~  171 (279)
T cd06619          97 LGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIA--KTYVGTNAYMAPERISGEQYG  171 (279)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccccc--cCCCCChhhcCceeecCCCCC
Confidence            4578999999999999   56699999999999999999999999999865432110  01122233333332211    


Q ss_pred             ------------------C------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ------------------K------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ------------------~------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                        .                              .....+.++.+++.+||+.+|++||++.+++
T Consensus       172 ~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil  251 (279)
T cd06619         172 IHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLM  251 (279)
T ss_pred             CcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHh
Confidence                              0                              0112345788999999999999999999997


Q ss_pred             HH
Q 044888          111 CN  112 (154)
Q Consensus       111 ~~  112 (154)
                      ..
T Consensus       252 ~~  253 (279)
T cd06619         252 DH  253 (279)
T ss_pred             cC
Confidence            64

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=1.5e-15  Score=110.27  Aligned_cols=107  Identities=26%  Similarity=0.351  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++|+|+++.|++++.++.++++|||++..............++..++.||.+.+   
T Consensus        99 ~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  175 (274)
T cd06609          99 YIAFILREVLLGLEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGY  175 (274)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccCCC
Confidence            34678999999999999   556999999999999999999999999998766543221112223333333333211   


Q ss_pred             -----------------------------------------CCCcc-hHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------KIDPG-CFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------~~~~~-~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                               ..+.. .+.++.+++.+||..+|++||++.+++.
T Consensus       176 ~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         176 DEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence                                                     00111 4677999999999999999999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.62  E-value=2e-15  Score=111.71  Aligned_cols=50  Identities=34%  Similarity=0.567  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe----cCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill----~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||++    +.++.+||+|||+++...
T Consensus       110 ~~~i~~qi~~aL~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~  163 (317)
T cd07867         110 VKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN  163 (317)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccC
Confidence            4578999999999999   5569999999999999    456789999999987654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.62  E-value=1.6e-15  Score=112.92  Aligned_cols=111  Identities=23%  Similarity=0.301  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC------CcEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN------WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~------~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      -.++.|+|.||++||   .++|+||||||.|||+..+      ...||+|||+++.+... ......+|++.||+||.+.
T Consensus       112 r~Fm~QLA~alq~L~---~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~-~~a~tlcGSplYMAPEV~~  187 (429)
T KOG0595|consen  112 RHFMQQLASALQFLH---ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPG-SMAETLCGSPLYMAPEVIM  187 (429)
T ss_pred             HHHHHHHHHHHHHHH---HCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCch-hHHHHhhCCccccCHHHHH
Confidence            357899999999999   5669999999999999765      46799999999998763 3334568999999999984


Q ss_pred             -CCCCc-chHHHHHHHHHHhhccC-CCCCCCHHHHHHHHHHHHH
Q 044888           78 -GKIDP-GCFKTFTDIAKKCLADR-GCDRPQMGDVLCNLGLAWR  118 (154)
Q Consensus        78 -~~~~~-~~~~~~~~l~~~C~~~~-p~~RP~~~~v~~~L~~~~~  118 (154)
                       ..++. ...+.+..|+-.|+... |-++.|..|+....+.-..
T Consensus       188 ~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~  231 (429)
T KOG0595|consen  188 SQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNE  231 (429)
T ss_pred             hccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcccc
Confidence             44443 35677777888888764 6777899998875554443

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.62  E-value=8.3e-16  Score=115.42  Aligned_cols=104  Identities=23%  Similarity=0.194  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+|++|||++......   .....|+..+++||.+.+    
T Consensus       133 ~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~  206 (340)
T PTZ00426        133 GCFYAAQIVLIFEYLQ---SLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR---TYTLCGTPEYIAPEILLNVGHG  206 (340)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCC---cceecCChhhcCHHHHhCCCCC
Confidence            4568899999999999   566999999999999999999999999998765431   112234455555544321    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLCN  112 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~~  112 (154)
                                                             ..+...+..+.+++.+|++.+|++|+     ++.++.+.
T Consensus       207 ~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        207 KAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             ccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence                                                   12334566788999999999999995     78887653

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=1.4e-15  Score=113.60  Aligned_cols=104  Identities=21%  Similarity=0.165  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++......   .....|+..+++||.+.+    
T Consensus       103 ~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~  176 (333)
T cd05600         103 ARFYMAEMFEAVDALH---ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTY---ANSVVGSPDYMAPEVLRGKGYD  176 (333)
T ss_pred             HHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEEEeCcCCcccccc---cCCcccCccccChhHhcCCCCC
Confidence            4567899999999999   556999999999999999999999999998754321   111123333333333211    


Q ss_pred             ------------------CC-----------------------C------cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------KI-----------------------D------PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------~~-----------------------~------~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                        ..                       +      ...+.++.+++.+||+.+|++||++.+++.
T Consensus       177 ~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~  256 (333)
T cd05600         177 FTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKN  256 (333)
T ss_pred             CccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHh
Confidence                              00                       0      123678899999999999999999999986


Q ss_pred             H
Q 044888          112 N  112 (154)
Q Consensus       112 ~  112 (154)
                      .
T Consensus       257 h  257 (333)
T cd05600         257 H  257 (333)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.62  E-value=1.8e-15  Score=108.19  Aligned_cols=107  Identities=24%  Similarity=0.347  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +...++.+++.||.|||   ..+++|+||++.||+++.++.++++|||++..............++..++.|+.+.    
T Consensus       104 ~~~~i~~~i~~~l~~lh---~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~  180 (258)
T cd08215         104 QILDWFVQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPY  180 (258)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccCCC
Confidence            35678999999999999   55699999999999999999999999998876544321111112222233222211    


Q ss_pred             ----------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ----------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ----------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ...+...+..+.+++.+||..+|++||++.+++.
T Consensus       181 ~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         181 NYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             CccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                                                    1122345678999999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.61  E-value=2.5e-15  Score=112.41  Aligned_cols=49  Identities=39%  Similarity=0.621  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ..++.|++.||.|||+  ..+++|+||+|.||+++.++.+|++|||++...
T Consensus       106 ~~~~~~l~~~l~~lH~--~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~  154 (333)
T cd06650         106 GKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  154 (333)
T ss_pred             HHHHHHHHHHHHHHHh--cCCEEecCCChhhEEEcCCCCEEEeeCCcchhh
Confidence            5678999999999995  235999999999999999999999999988654

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.61  E-value=1.9e-15  Score=110.10  Aligned_cols=50  Identities=32%  Similarity=0.435  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++....
T Consensus       102 ~~~~~~~i~~~l~~LH---~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~  151 (288)
T cd07833         102 VRSYIWQLLQAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALR  151 (288)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEEeeecccccC
Confidence            4678899999999999   5569999999999999999999999999876644

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.61  E-value=1.4e-15  Score=111.35  Aligned_cols=105  Identities=27%  Similarity=0.289  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++........ .....|+..+++||.+.+    
T Consensus       104 ~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~  179 (285)
T cd05605         104 AVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET-IRGRVGTVGYMAPEVVKNERYT  179 (285)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc-cccccCCCCccCcHHhcCCCCC
Confidence            4568899999999999   55699999999999999999999999998876432111 011123333333333211    


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVL  110 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~  110 (154)
                                                                 ..+...+..+.+++..||+.||++||     ++.+++
T Consensus       180 ~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~  259 (285)
T cd05605         180 FSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVK  259 (285)
T ss_pred             ccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHh
Confidence                                                       12233567789999999999999999     677775


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      .
T Consensus       260 ~  260 (285)
T cd05605         260 A  260 (285)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.61  E-value=1.6e-15  Score=110.39  Aligned_cols=107  Identities=25%  Similarity=0.341  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............++..++.||.+.     
T Consensus       105 ~~~~~~ql~~~l~~lh---~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  181 (280)
T cd06611         105 IRYVCRQMLEALNFLH---SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFK  181 (280)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccC
Confidence            4678999999999999   55699999999999999999999999998754432111111111222222222210     


Q ss_pred             ----------------------C------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ----------------------G------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ----------------------~------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                            +                        ..+...+.++.+++..||+.+|++||++.+|++
T Consensus       182 ~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (280)
T cd06611         182 DNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLK  261 (280)
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhc
Confidence                                  0                        112235578999999999999999999999975


Q ss_pred             H
Q 044888          112 N  112 (154)
Q Consensus       112 ~  112 (154)
                      .
T Consensus       262 ~  262 (280)
T cd06611         262 H  262 (280)
T ss_pred             C
Confidence            3

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.61  E-value=1.8e-15  Score=115.59  Aligned_cols=51  Identities=39%  Similarity=0.397  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      .++.++.|++.||.|||   ..+++|||||+.||+++.++.++|+|||++....
T Consensus       186 ~~~~i~~ql~~aL~~LH---~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~  236 (392)
T PHA03207        186 QAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLD  236 (392)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEccCccccccC
Confidence            46788999999999999   5569999999999999999999999999986543

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.61  E-value=2.1e-15  Score=110.77  Aligned_cols=107  Identities=26%  Similarity=0.426  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      +.+++.|++.||.|||+  ..+++|+||++.||+++.++.++|+|||++......... ....++..+++|+.+.     
T Consensus       116 ~~~i~~~i~~~l~~lH~--~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~  192 (296)
T cd06618         116 LGKMTVAIVKALHYLKE--KHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAK-TRSAGCAAYMAPERIDPPDPN  192 (296)
T ss_pred             HHHHHHHHHHHHHHHHh--hCCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcc-cCCCCCccccCHhhcCCCCCc
Confidence            56799999999999995  246999999999999999999999999988654321110 0001112222222110     


Q ss_pred             ---------------------C-------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ---------------------G-------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ---------------------~-------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                           +                         ......+.++.+++.+||+.+|++||++.+++.
T Consensus       193 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  272 (296)
T cd06618         193 PKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQ  272 (296)
T ss_pred             cccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                                 0                         011124677899999999999999999999975


Q ss_pred             H
Q 044888          112 N  112 (154)
Q Consensus       112 ~  112 (154)
                      .
T Consensus       273 ~  273 (296)
T cd06618         273 H  273 (296)
T ss_pred             C
Confidence            4

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.61  E-value=1.7e-15  Score=119.16  Aligned_cols=49  Identities=27%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ..++.|++.||.|||   ..+++||||||.||+++.++.+||+|||+++...
T Consensus       270 ~~i~~ql~~aL~yLH---~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~  318 (501)
T PHA03210        270 RAIMKQLLCAVEYIH---DKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFE  318 (501)
T ss_pred             HHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEeCCCceecC
Confidence            468999999999999   5569999999999999999999999999997654

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.61  E-value=1.9e-15  Score=110.57  Aligned_cols=102  Identities=27%  Similarity=0.258  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++|+|+++.|++++.++.++++|||++........ .....|+..+++||.+.+   
T Consensus       103 ~~~~~~~ql~~~l~~lH---~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~-~~~~~g~~~~~aPE~~~~~~~  178 (285)
T cd05632         103 RALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES-IRGRVGTVGYMAPEVLNNQRY  178 (285)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc-ccCCCCCcCccChHHhcCCCC
Confidence            35678999999999999   56699999999999999999999999998865432110 111123333333333211   


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                  ..+...+..+.+|+..||+.+|++||++.
T Consensus       179 ~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05632         179 TLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQ  251 (285)
T ss_pred             CcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCc
Confidence                                                        12234566788999999999999999943

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.61  E-value=2e-15  Score=109.74  Aligned_cols=52  Identities=29%  Similarity=0.413  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      +++.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+.....
T Consensus        99 ~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~  150 (283)
T cd05118          99 LIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGS  150 (283)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCC
Confidence            35678999999999999   55699999999999999999999999998765543

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.61  E-value=2.2e-15  Score=114.06  Aligned_cols=119  Identities=24%  Similarity=0.250  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHhhcC------CCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcc
Q 044888            4 LKICIGAARGLHYLRTG------TRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPF   75 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~------~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~   75 (154)
                      -+|+..+++||+|||+.      .+++|.|||||++|||+-.+.++.|+|||++..+.....  ......|+..||+||.
T Consensus       310 cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEv  389 (534)
T KOG3653|consen  310 CRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEV  389 (534)
T ss_pred             HHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHH
Confidence            46788999999999964      356899999999999999999999999999988765322  3334788999999988


Q ss_pred             ccCCCC-------------------------------------------------------------------------c
Q 044888           76 LRGKID-------------------------------------------------------------------------P   82 (154)
Q Consensus        76 ~~~~~~-------------------------------------------------------------------------~   82 (154)
                      +.+..+                                                                         .
T Consensus       390 LEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h  469 (534)
T KOG3653|consen  390 LEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKH  469 (534)
T ss_pred             HhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcC
Confidence            876100                                                                         0


Q ss_pred             chHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhcCC
Q 044888           83 GCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGA  122 (154)
Q Consensus        83 ~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~~~  122 (154)
                      .....+.+.+..||+.||+.|-|+.=|.+++.++....+.
T Consensus       470 ~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~~  509 (534)
T KOG3653|consen  470 AGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWED  509 (534)
T ss_pred             ccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCCc
Confidence            1244677889999999999999999998888888776664

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.61  E-value=1.7e-15  Score=110.59  Aligned_cols=107  Identities=26%  Similarity=0.402  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ..+++.+++.||.|||+  ..+++|+||+|.||+++.++.++++|||++......... ....++..+++||.+.     
T Consensus       109 ~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~  185 (288)
T cd06616         109 LGKIAVATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAK-TRDAGCRPYMAPERIDPSARD  185 (288)
T ss_pred             HHHHHHHHHHHHHHHhh--cCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCcc-ccccCccCccCHHHhcccccc
Confidence            45788999999999995  246999999999999999999999999988653321100 0011112222221110     


Q ss_pred             -----------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 -----------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 -----------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                     ...+...+.++.+++.+||+.+|++||++.+|+
T Consensus       186 ~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~  265 (288)
T cd06616         186 GYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELL  265 (288)
T ss_pred             CCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence                                                           011123567789999999999999999999998


Q ss_pred             HH
Q 044888          111 CN  112 (154)
Q Consensus       111 ~~  112 (154)
                      ..
T Consensus       266 ~~  267 (288)
T cd06616         266 EH  267 (288)
T ss_pred             cC
Confidence            53

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.61  E-value=2.1e-15  Score=108.20  Aligned_cols=108  Identities=26%  Similarity=0.366  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      .+++++.|++.||.|||   ..+++|+|+++.||+++.++ .++++|||.+..............|+..+++|+.+..  
T Consensus       102 ~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~  178 (257)
T cd08225         102 QILSWFVQISLGLKHIH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRP  178 (257)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCC
Confidence            35778999999999999   45699999999999998775 4699999988665432111111223333333332211  


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                ...+..+..+.+++.+||+.+|++||++.+|++.
T Consensus       179 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         179 YNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence                                                      1122346689999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.61  E-value=3e-15  Score=123.10  Aligned_cols=116  Identities=22%  Similarity=0.181  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC------------------cceeeec
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM------------------LTLCCYQ   64 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~------------------~~~~~~~   64 (154)
                      .++++.|++.||.|||   ..+++||||||.||+++.++.++++|||+++.....                  .+.....
T Consensus       115 iL~I~~QIa~AL~yLH---s~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~  191 (932)
T PRK13184        115 FLSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKI  191 (932)
T ss_pred             HHHHHHHHHHHHHHHH---HCCccccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCC
Confidence            4678999999999999   556999999999999999999999999998765210                  0111123


Q ss_pred             ccccccccCccccCC----------------------CC------------------------cchHHHHHHHHHHhhcc
Q 044888           65 SGTLGLVVDPFLRGK----------------------ID------------------------PGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        65 ~g~~~~~~~~~~~~~----------------------~~------------------------~~~~~~~~~l~~~C~~~   98 (154)
                      .|+..+++||.+.+.                      .|                        ...+..+.+++.+|++.
T Consensus       192 vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~  271 (932)
T PRK13184        192 VGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQIAMKALAV  271 (932)
T ss_pred             CCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHHHHHHccC
Confidence            477778877765430                      00                        12355688999999999


Q ss_pred             CCCCCC-CHHHHHHHHHHHHHhcC
Q 044888           99 RGCDRP-QMGDVLCNLGLAWRQQG  121 (154)
Q Consensus        99 ~p~~RP-~~~~v~~~L~~~~~~~~  121 (154)
                      ||++|| ++.++...|+...+...
T Consensus       272 DP~kR~ss~eeLl~~Le~~lq~~p  295 (932)
T PRK13184        272 DPAERYSSVQELKQDLEPHLQGSP  295 (932)
T ss_pred             ChhhCcCHHHHHHHHHHHHHhcCc
Confidence            999995 67888888888776443

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.61  E-value=2.3e-15  Score=108.87  Aligned_cols=105  Identities=26%  Similarity=0.340  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc---ceeeecccccccccCccccC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML---TLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .+.++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++.......   .......++..+++||.+.+ 
T Consensus       108 ~~~~~~qi~~~l~~LH---~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  184 (266)
T cd06651         108 TRKYTRQILEGMSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGE  184 (266)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCC
Confidence            4678999999999999   5569999999999999999999999999886543210   00011123333333333211 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  ..+......+.+++ .||..+|++||++.||+.
T Consensus       185 ~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         185 GYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             CCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence                                                        11222344556666 788899999999999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.60  E-value=2.9e-15  Score=108.78  Aligned_cols=106  Identities=22%  Similarity=0.298  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      .+.++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||.+..............|+..+++||.+.+    
T Consensus       103 ~~~i~~~i~~~l~~lh---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (277)
T cd06917         103 ISVIIREVLVALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYY  179 (277)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCcc
Confidence            4678899999999999   556999999999999999999999999988665432211111223333333332210    


Q ss_pred             -----------------------------------------CCCc-chHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------KIDP-GCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------~~~~-~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                               ..+. ..+.++.+++.+||+.+|++||++.+++.
T Consensus       180 ~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         180 DTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             ccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence                                                     0011 24668999999999999999999999975

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.60  E-value=2.7e-15  Score=107.24  Aligned_cols=107  Identities=23%  Similarity=0.304  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      .+..++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||.+..............++..++.||...    
T Consensus       100 ~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~  176 (254)
T cd06627         100 LVAVYVYQVLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGA  176 (254)
T ss_pred             HHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCC
Confidence            35678999999999999   56699999999999999999999999998876543221111112233333333211    


Q ss_pred             ----------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ----------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ----------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ...+...+..+.+++.+||..+|++||++.+++.
T Consensus       177 ~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         177 STASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence                                                    1122345678899999999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.60  E-value=4.7e-15  Score=109.52  Aligned_cols=104  Identities=31%  Similarity=0.391  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      .+..++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++.......    ...++..+++|+.+.    
T Consensus       116 ~~~~~~~ql~~~L~~LH---~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~  188 (307)
T cd06607         116 EIAAICHGALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPAN----SFVGTPYWMAPEVILAMDE  188 (307)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCceecCCCcccEEECCCCCEEEeecCcceecCCCC----CccCCccccCceeeeccCC
Confidence            35678999999999999   5569999999999999999999999999886553221    111222233333210    


Q ss_pred             ---------------------CC-----------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 ---------------------GK-----------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ---------------------~~-----------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                           +.                       ....++..+.+++.+||+.+|++||++.+|+..
T Consensus       189 ~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         189 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                                 00                       011245678999999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.60  E-value=2.7e-15  Score=109.18  Aligned_cols=106  Identities=25%  Similarity=0.422  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      .++++.|++.||.|||+.  .+++|+||+|.||+++.++.+|++|||++........ .....++..+++|+.+.     
T Consensus       105 ~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~  181 (283)
T cd06617         105 LGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA-KTIDAGCKPYMAPERINPELNQ  181 (283)
T ss_pred             HHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecccccccccccc-cccccCCccccChhhcCCcccc
Confidence            467899999999999952  2699999999999999999999999999875432110 00011222222222110     


Q ss_pred             ---------------------C-----------------------CC-CcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ---------------------G-----------------------KI-DPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ---------------------~-----------------------~~-~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                           +                       .. ....+.++.+++..||+.+|++||++.+|+.
T Consensus       182 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         182 KGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             cccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                 0                       00 1124578899999999999999999999975

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.5e-15  Score=115.71  Aligned_cols=49  Identities=37%  Similarity=0.550  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      -++.|++.||.|+|   ..+++|||||.+|||++.++..||+|||++++...
T Consensus       222 c~mkQLl~Gl~~cH---~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~  270 (560)
T KOG0600|consen  222 CYMKQLLEGLEYCH---SRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTP  270 (560)
T ss_pred             HHHHHHHHHHHHHh---hcCeeeccccccceEEcCCCCEEeccccceeeccC
Confidence            46899999999999   56699999999999999999999999999997654

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.60  E-value=4.5e-15  Score=108.32  Aligned_cols=106  Identities=26%  Similarity=0.387  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      ....++.|++.||.|||+  ..+++|+||+|.||+++.++.++++|||++........  ....+...+++|+.+.    
T Consensus       103 ~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~  178 (286)
T cd06622         103 VLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLA--KTNIGCQSYMAPERIKSGGP  178 (286)
T ss_pred             HHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCcc--ccCCCccCccCcchhcCCCC
Confidence            346788999999999995  24699999999999999999999999998865422111  0011111122222110    


Q ss_pred             -------------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           78 -------------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        78 -------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                                       ...+...+.++.+++.+||+.+|++||++.+
T Consensus       179 ~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  258 (286)
T cd06622         179 NQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQ  258 (286)
T ss_pred             CccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHH
Confidence                                                             1223345678899999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      ++.
T Consensus       259 l~~  261 (286)
T cd06622         259 LLE  261 (286)
T ss_pred             Hhc
Confidence            986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.60  E-value=2.5e-15  Score=110.64  Aligned_cols=49  Identities=35%  Similarity=0.571  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++...
T Consensus       106 ~~~~~~qi~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  154 (301)
T cd07873         106 VKLFLFQLLRGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAK  154 (301)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeCCCCCHHHEEECCCCcEEECcCcchhcc
Confidence            4567899999999999   566999999999999999999999999988653

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=4.3e-15  Score=111.81  Aligned_cols=119  Identities=24%  Similarity=0.257  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHhhc-----CCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc----ceeeecccccccccC
Q 044888            3 RLKICIGAARGLHYLRT-----GTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML----TLCCYQSGTLGLVVD   73 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~-----~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~----~~~~~~~g~~~~~~~   73 (154)
                      -+++++.+|+||++||.     ...+.|.|||||+.|||+-+++.+.|+|+|++-......    .......|+-.||+|
T Consensus       310 ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAP  389 (513)
T KOG2052|consen  310 MLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAP  389 (513)
T ss_pred             HHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccCh
Confidence            47889999999999993     456889999999999999999999999999997765531    123356788888888


Q ss_pred             ccccC------------------------------------------------------------------C-----CCc
Q 044888           74 PFLRG------------------------------------------------------------------K-----IDP   82 (154)
Q Consensus        74 ~~~~~------------------------------------------------------------------~-----~~~   82 (154)
                      |.+..                                                                  .     ...
T Consensus       390 EvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~s~  469 (513)
T KOG2052|consen  390 EVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWKSD  469 (513)
T ss_pred             HHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcccccC
Confidence            87754                                                                  0     012


Q ss_pred             chHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhcC
Q 044888           83 GCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus        83 ~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~~  121 (154)
                      ++...+.+||..||..+|..|-|+--|-+.|.++.+..+
T Consensus       470 ~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~~e  508 (513)
T KOG2052|consen  470 PALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNSDE  508 (513)
T ss_pred             HHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcChh
Confidence            356678899999999999999999999999988876443

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.59  E-value=3.6e-15  Score=111.21  Aligned_cols=105  Identities=22%  Similarity=0.261  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~----   77 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||++........ ......|+..+++||.+.    
T Consensus       104 ~~~~~~qi~~aL~~lH---~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  180 (330)
T cd05601         104 AQFYLAELVLAIHSVH---QMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNG  180 (330)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccc
Confidence            3457889999999999   55699999999999999999999999999876543211 111122334444443321    


Q ss_pred             ------------------------C-------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           78 ------------------------G-------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        78 ------------------------~-------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                              +                         +..+..+..+.+++..|++ +|.+||++.+
T Consensus       181 ~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~  259 (330)
T cd05601         181 DGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEG  259 (330)
T ss_pred             cccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHH
Confidence                                    1                         0112346778999999997 9999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      ++.
T Consensus       260 l~~  262 (330)
T cd05601         260 LCC  262 (330)
T ss_pred             HhC
Confidence            874

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.59  E-value=5.3e-15  Score=106.03  Aligned_cols=106  Identities=25%  Similarity=0.383  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ...+++.+++.||.|||   ..+++|+|+++.||+++.+ ..++++|||++........ .....++..+++||.+.+  
T Consensus       102 ~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~  177 (256)
T cd08220         102 TILHFFVQILLALHHVH---TKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK-AYTVVGTPCYISPELCEGKP  177 (256)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc-ccccccCCcccCchhccCCC
Confidence            34678899999999999   5669999999999999855 4679999999876543210 001122223333332211  


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                ..+...+..+.+++..||+.+|++||++.+++.
T Consensus       178 ~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         178 YNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             CCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence                                                      122345678999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>PTZ00284 protein kinase; Provisional

Probab=99.59  E-value=4.6e-15  Score=115.70  Aligned_cols=69  Identities=20%  Similarity=0.215  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC----------------cEEEecCCCcccCCCCcceeeeccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW----------------VAKVSDLGLAKVGPNMLTLCCYQSG   66 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~----------------~~kl~dfg~~~~~~~~~~~~~~~~g   66 (154)
                      ...|+.|++.||.|||+  ..+|+||||||.|||++.++                .+||+|||.+......   .....|
T Consensus       233 ~~~i~~qi~~aL~yLH~--~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~---~~~~~g  307 (467)
T PTZ00284        233 LAQIIFQTGVALDYFHT--ELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHS---RTAIVS  307 (467)
T ss_pred             HHHHHHHHHHHHHHHHh--cCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccc---cccccC
Confidence            45789999999999994  24699999999999998654                4899999987543221   112234


Q ss_pred             ccccccCccc
Q 044888           67 TLGLVVDPFL   76 (154)
Q Consensus        67 ~~~~~~~~~~   76 (154)
                      +..|++||.+
T Consensus       308 t~~Y~APE~~  317 (467)
T PTZ00284        308 TRHYRSPEVV  317 (467)
T ss_pred             CccccCcHHh
Confidence            5555555543

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.59  E-value=3e-15  Score=109.61  Aligned_cols=106  Identities=25%  Similarity=0.274  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +.+.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++........ .....|+..+++||.+.+   
T Consensus       103 ~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~  178 (285)
T cd05630         103 RAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT-IKGRVGTVGYMAPEVVKNERY  178 (285)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCcc-ccCCCCCccccChHHHcCCCC
Confidence            35678999999999999   56699999999999999999999999998865432111 011123333333333211   


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MGDV  109 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~~v  109 (154)
                                                                  ..+...+.++.+++..||+.||++||+     +.|+
T Consensus       179 ~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~  258 (285)
T cd05630         179 TFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREV  258 (285)
T ss_pred             CCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhhhhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHH
Confidence                                                        112235567889999999999999999     7777


Q ss_pred             HH
Q 044888          110 LC  111 (154)
Q Consensus       110 ~~  111 (154)
                      +.
T Consensus       259 ~~  260 (285)
T cd05630         259 KE  260 (285)
T ss_pred             Hc
Confidence            65

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.59  E-value=2.8e-15  Score=107.67  Aligned_cols=110  Identities=26%  Similarity=0.224  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--------eeeecccccccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--------LCCYQSGTLGLVVD   73 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--------~~~~~~g~~~~~~~   73 (154)
                      .+++++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++........        ......+...++.|
T Consensus        94 ~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P  170 (265)
T cd05579          94 VARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAP  170 (265)
T ss_pred             HHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCH
Confidence            46788999999999999   56699999999999999999999999998765322100        00011112222222


Q ss_pred             ccc----------------------cC---------------------CCCcch--HHHHHHHHHHhhccCCCCCCCHHH
Q 044888           74 PFL----------------------RG---------------------KIDPGC--FKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        74 ~~~----------------------~~---------------------~~~~~~--~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                      +..                      .+                     ..+..+  +..+.+++.+||+.+|++||++.+
T Consensus       171 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  250 (265)
T cd05579         171 EVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKS  250 (265)
T ss_pred             HHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCCcc
Confidence            211                      00                     111222  678999999999999999999966


Q ss_pred             HHHHHH
Q 044888          109 VLCNLG  114 (154)
Q Consensus       109 v~~~L~  114 (154)
                      +.+.|+
T Consensus       251 ~~~~l~  256 (265)
T cd05579         251 IEEIKN  256 (265)
T ss_pred             HHHHhc
Confidence            666554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.59  E-value=5.7e-15  Score=107.45  Aligned_cols=107  Identities=25%  Similarity=0.359  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ...++.|++.|+.|||   ..+++|+|+++.||+++.++.++++|||++..............++..++.|+.+.     
T Consensus       103 ~~~~~~~l~~~l~~lh---~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  179 (277)
T cd06641         103 IATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYD  179 (277)
T ss_pred             HHHHHHHHHHHHHHHc---cCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCC
Confidence            4678899999999999   55699999999999999999999999998765432110000111222222222111     


Q ss_pred             -----------------C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 -----------------G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 -----------------~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                       +                      ..+...+.++.+++.+||+.+|++||++.+++..
T Consensus       180 ~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         180 SKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             chhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence                             0                      1122356789999999999999999999999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.59  E-value=5.9e-15  Score=106.20  Aligned_cols=106  Identities=29%  Similarity=0.363  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceee----ecccccccccCccccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC----YQSGTLGLVVDPFLRG   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~   78 (154)
                      +..++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||.+...........    ...++..++.||.+.+
T Consensus       101 ~~~i~~~i~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~  177 (264)
T cd06626         101 IRVYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITG  177 (264)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccC
Confidence            4678999999999999   55699999999999999999999999998866533111000    0112222222222110


Q ss_pred             ------------------------------------------------CCCc--chHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 ------------------------------------------------KIDP--GCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 ------------------------------------------------~~~~--~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                                      ..+.  .....+.+++.+||+.+|++||++.+
T Consensus       178 ~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  257 (264)
T cd06626         178 GKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASE  257 (264)
T ss_pred             CCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHH
Confidence                                                            1111  12667889999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      ++.
T Consensus       258 i~~  260 (264)
T cd06626         258 LLQ  260 (264)
T ss_pred             Hhc
Confidence            874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.59  E-value=2.6e-15  Score=112.50  Aligned_cols=105  Identities=22%  Similarity=0.313  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC------
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG------   78 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------   78 (154)
                      .|+.||.+|+.|+|   ..+++|||||..|||+|.++++||+|||++..+... .....++|++.|..|+.+.|      
T Consensus       157 hfFRQIvSAVhYCH---knrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~-kfLqTFCGSPLYASPEIvNG~PY~GP  232 (668)
T KOG0611|consen  157 HFFRQIVSAVHYCH---KNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADK-KFLQTFCGSPLYASPEIVNGTPYKGP  232 (668)
T ss_pred             HHHHHHHHHHHHHh---hccceecccchhheeecCCCCeeeeccchhhhhccc-cHHHHhcCCcccCCccccCCCCCCCC
Confidence            57899999999999   677999999999999999999999999999776542 22334667777777766654      


Q ss_pred             -------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 -------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 -------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                           ...+..+.+..-|+.+++..||++|.|+.+|...-
T Consensus       233 EVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~~PSdA~gLIRwmLmVNP~RRATieDiAsHW  304 (668)
T KOG0611|consen  233 EVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPETPSDASGLIRWMLMVNPERRATIEDIASHW  304 (668)
T ss_pred             ccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCCCCchHHHHHHHHHhcCcccchhHHHHhhhh
Confidence                                                 12234566777899999999999999999997653

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.59  E-value=4.8e-15  Score=108.26  Aligned_cols=107  Identities=28%  Similarity=0.378  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .++.++.|++.||.|||   ..+++|+|++|.||+++.++.++++|||++..............++..++.|+.+.+   
T Consensus       117 ~~~~i~~~i~~~L~~lH---~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  193 (286)
T cd06614         117 QIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDY  193 (286)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCC
Confidence            45778999999999999   566999999999999999999999999976543321000000111112222221100   


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 ..+...+..+.+++..||+.+|.+||++.+|+.
T Consensus       194 ~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         194 GPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             CCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence                                                       011125678999999999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=3.5e-15  Score=104.53  Aligned_cols=104  Identities=23%  Similarity=0.297  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      ..++.|+|.||.|+|   .+.++|||+||.|+|++..+..|++|||.+...+  .......+|++.++.||..++     
T Consensus       127 a~Yi~q~A~Al~y~h---~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p--~~kR~tlcgt~dyl~pEmv~~~~hd~  201 (281)
T KOG0580|consen  127 ATYIKQLANALLYCH---LKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP--SNKRKTLCGTLDYLPPEMVEGRGHDK  201 (281)
T ss_pred             hHHHHHHHHHHHHhc---cCCcccCCCCHHHhccCCCCCeeccCCCceeecC--CCCceeeecccccCCHhhcCCCCccc
Confidence            457899999999999   5559999999999999999999999999986654  334456678888888877765     


Q ss_pred             --------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 --------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 --------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                            .+|...+....+++..|+..+|.+|.+..||+..
T Consensus       202 ~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  202 FVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPSTISGGAADLISRLLVKNPIERLALTEVMDH  273 (281)
T ss_pred             hhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCcccChhHHHHHHHHhccCccccccHHHHhhh
Confidence                                                  3456677788999999999999999999999753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.59  E-value=3.3e-15  Score=123.12  Aligned_cols=107  Identities=10%  Similarity=0.058  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-------------------CCcEEEecCCCcccCCCCc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-------------------NWVAKVSDLGLAKVGPNML----   58 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-------------------~~~~kl~dfg~~~~~~~~~----   58 (154)
                      +.+.++.||+.||.|||   ..+|+||||||.|||++.                   ++.+|++|||+++......    
T Consensus        81 ~~~~i~~qi~~al~~lH---~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~  157 (793)
T PLN00181         81 ECFHVFRQIVEIVNAAH---SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRI  157 (793)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccch
Confidence            35678999999999999   566999999999999954                   3455666676665321100    


Q ss_pred             ------------ceeeecccccccccCccccCC---------------------C------------------Cc---ch
Q 044888           59 ------------TLCCYQSGTLGLVVDPFLRGK---------------------I------------------DP---GC   84 (154)
Q Consensus        59 ------------~~~~~~~g~~~~~~~~~~~~~---------------------~------------------~~---~~   84 (154)
                                  .......|+..|++||.+.+.                     .                  ++   ..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (793)
T PLN00181        158 EKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQILLN  237 (793)
T ss_pred             hhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHHHhhcChhhhhc
Confidence                        000112356668888876430                     0                  00   01


Q ss_pred             HHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           85 FKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        85 ~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      ......++..||+.+|.+||++.||++
T Consensus       238 ~~~~~~~~~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        238 WPKEASFCLWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             CHHHHHHHHHhCCCChhhCcChHHHhh
Confidence            234567888999999999999999974

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.58  E-value=6.6e-15  Score=105.99  Aligned_cols=105  Identities=23%  Similarity=0.346  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      .+.++.|++.||.|||   ..+++|+|+++.|++++. +.++++|||++..............++..+++|+.+.     
T Consensus       108 ~~~~~~~l~~~l~~lH---~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~  183 (260)
T cd08222         108 VCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYD  183 (260)
T ss_pred             HHHHHHHHHHHHHHHH---HcCccccCCChhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCC
Confidence            4678999999999999   566999999999999975 4699999998866532211111111222222222110     


Q ss_pred             ---------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ---------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ---------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                             ...+...+.++.+++.+||+.+|++||++.++++
T Consensus       184 ~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         184 SKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence                                                   1123345678999999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.58  E-value=7.1e-15  Score=107.03  Aligned_cols=51  Identities=31%  Similarity=0.475  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ++.+++.|++.||.|||   +.+++|+||++.||+++.++.++++|||.+....
T Consensus       100 ~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~  150 (286)
T cd07832         100 QVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISADGVLKIADFGLARLFS  150 (286)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecCCcCHHHEEEcCCCcEEEeeeeeccccc
Confidence            35678999999999999   5569999999999999999999999999887654

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.58  E-value=4.7e-15  Score=108.96  Aligned_cols=108  Identities=23%  Similarity=0.290  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .+..++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............++..++.|+.+.+   
T Consensus       116 ~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  192 (293)
T cd06647         116 QIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY  192 (293)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccCCC
Confidence            35678999999999999   566999999999999999999999999987544321110001112222222221100   


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                 ..+...+..+.+++..||+.+|++||++.+++..
T Consensus       193 ~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         193 GPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                                                       0111234678899999999999999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=3.4e-15  Score=116.14  Aligned_cols=98  Identities=30%  Similarity=0.415  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-------   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------   78 (154)
                      |..++..||.|||+   ...||||+|..|||+...+.+|++|||.+.+..+.    ..+.|++++|+|+.+-.       
T Consensus       131 i~~gaL~gLaYLHS---~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA----nsFvGTPywMAPEVILAMDEGqYd  203 (948)
T KOG0577|consen  131 ITHGALQGLAYLHS---HNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA----NSFVGTPYWMAPEVILAMDEGQYD  203 (948)
T ss_pred             HHHHHHHHHHHHHH---hhHHhhhccccceEecCCCeeeeccccchhhcCch----hcccCCccccchhHheeccccccC
Confidence            56788899999995   55999999999999999999999999999876543    35778999998887631       


Q ss_pred             -------------------------------------C----CCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 -------------------------------------K----IDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 -------------------------------------~----~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                           +    ...+++..|..++..|++.-|..|||..+++
T Consensus       204 gkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll  276 (948)
T KOG0577|consen  204 GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELL  276 (948)
T ss_pred             CccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHh
Confidence                                                 0    1235677889999999999999999998873

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.58  E-value=5.7e-15  Score=109.93  Aligned_cols=51  Identities=37%  Similarity=0.520  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++.....
T Consensus       105 ~~~i~~~l~~~l~~LH---~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~  155 (330)
T cd07834         105 IQYFLYQILRGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDP  155 (330)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccCceEeecc
Confidence            4678999999999999   55699999999999999999999999998876543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.58  E-value=7.5e-15  Score=105.13  Aligned_cols=104  Identities=31%  Similarity=0.396  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      .+.++.|++.||.|||   +.+++|+|+++.||+++.++.++++|||++.........  ...++..++.||.+.     
T Consensus       105 ~~~~~~~l~~al~~lh---~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~Pe~~~~~~~~  179 (256)
T cd08530         105 IWRIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAK--TQIGTPHYMAPEVWKGRPYS  179 (256)
T ss_pred             HHHHHHHHHHHHHHHh---hCCcccCCCCcceEEEecCCcEEEeeccchhhhccCCcc--cccCCccccCHHHHCCCCCC
Confidence            4578899999999999   566999999999999999999999999988665432110  011111111111110     


Q ss_pred             ---------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ---------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ---------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                             ...+...+.++.+++..||+.+|++||++.+++.
T Consensus       180 ~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         180 YKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                                                   1122345677999999999999999999999975

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.58  E-value=7.6e-15  Score=105.55  Aligned_cols=108  Identities=30%  Similarity=0.478  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .+++++.|++.|+.|||+  ..+++|+|+++.||+++.++.++++|||++..............+...+++||.+.+   
T Consensus       100 ~~~~~~~~l~~~l~~lh~--~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~  177 (264)
T cd06623         100 VLAYIARQILKGLDYLHT--KRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESY  177 (264)
T ss_pred             HHHHHHHHHHHHHHHHhc--cCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCC
Confidence            357889999999999994  166999999999999999999999999988765432111111122222222222111   


Q ss_pred             --------------------------------------------CCCcc-hHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 --------------------------------------------KIDPG-CFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 --------------------------------------------~~~~~-~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  ..+.. .+..+.+++..||+.+|++||++.++++
T Consensus       178 ~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~  255 (264)
T cd06623         178 SYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQ  255 (264)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence                                                        11222 5678999999999999999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.58  E-value=4.6e-15  Score=111.01  Aligned_cols=50  Identities=34%  Similarity=0.568  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.+||+|||++....
T Consensus       110 ~~~i~~qi~~aL~~LH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  159 (337)
T cd07858         110 CQYFLYQLLRGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTS  159 (337)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcCccccccC
Confidence            4678999999999999   5569999999999999999999999999887543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.58  E-value=5.1e-15  Score=112.31  Aligned_cols=107  Identities=22%  Similarity=0.222  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||++........ ......|+..+++||.+.+   
T Consensus       144 ~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  220 (370)
T cd05596         144 ARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGG  220 (370)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCC
Confidence            4567889999999999   56699999999999999999999999999876532211 1112335555555553311   


Q ss_pred             ----------------------------------------------CCC--cchHHHHHHHHHHhhccCCCC--CCCHHH
Q 044888           79 ----------------------------------------------KID--PGCFKTFTDIAKKCLADRGCD--RPQMGD  108 (154)
Q Consensus        79 ----------------------------------------------~~~--~~~~~~~~~l~~~C~~~~p~~--RP~~~~  108 (154)
                                                                    ..+  ...+.++.+++..|++.+|.+  ||++.+
T Consensus       221 ~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~e  300 (370)
T cd05596         221 DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDE  300 (370)
T ss_pred             CCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHH
Confidence                                                          011  134678899999999999987  999999


Q ss_pred             HHHH
Q 044888          109 VLCN  112 (154)
Q Consensus       109 v~~~  112 (154)
                      ++..
T Consensus       301 ll~h  304 (370)
T cd05596         301 IKSH  304 (370)
T ss_pred             HhcC
Confidence            9754

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.58  E-value=9.1e-15  Score=108.14  Aligned_cols=50  Identities=42%  Similarity=0.611  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||+  ..+++|+|+++.||+++.++.++++|||++...
T Consensus       101 ~~~~~~~i~~~l~~lH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  150 (308)
T cd06615         101 LGKISIAVLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  150 (308)
T ss_pred             HHHHHHHHHHHHHHHHh--hCCEEECCCChHHEEEecCCcEEEccCCCcccc
Confidence            46789999999999995  246999999999999999999999999987654

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.58  E-value=1.3e-14  Score=106.15  Aligned_cols=49  Identities=33%  Similarity=0.482  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.++|+|||+++..
T Consensus       105 ~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~  153 (291)
T cd07870         105 VRLFMFQLLRGLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLARAK  153 (291)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCChHHEEEcCCCcEEEecccccccc
Confidence            4567899999999999   556999999999999999999999999987643

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.57  E-value=1.6e-15  Score=111.30  Aligned_cols=48  Identities=35%  Similarity=0.620  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      -+..|+.+||.|+|+..   ++||||||.|++++.+-..|++|||+++...
T Consensus       129 ~f~YQiLrgLKyiHSAn---ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~  176 (359)
T KOG0660|consen  129 YFLYQILRGLKYIHSAN---VIHRDLKPSNLLLNADCDLKICDFGLARYLD  176 (359)
T ss_pred             HHHHHHHHhcchhhccc---ccccccchhheeeccCCCEEeccccceeecc
Confidence            35799999999999655   9999999999999999999999999999884

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.57  E-value=6.3e-15  Score=107.28  Aligned_cols=50  Identities=26%  Similarity=0.443  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +..+++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++...
T Consensus       101 ~~~~~~~qi~~~l~~lH---~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~  150 (284)
T cd07836         101 TVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAF  150 (284)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCcEEEeecchhhhh
Confidence            35678999999999999   556999999999999999999999999988654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.57  E-value=1.3e-14  Score=107.79  Aligned_cols=108  Identities=28%  Similarity=0.348  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      ++..++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++.......    ...++..+++||.+     
T Consensus       126 ~~~~i~~~i~~~l~~lH---~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~  198 (317)
T cd06635         126 EIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPAN----SFVGTPYWMAPEVILAMDE  198 (317)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCCcccEEECCCCCEEEecCCCccccCCcc----cccCCccccChhhhhcCCC
Confidence            35678899999999999   5569999999999999999999999999876543211    11122223332221     


Q ss_pred             --------------------cC-----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 --------------------RG-----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 --------------------~~-----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                          .+                       ......+..+.+++.+||+.+|.+||++.+|+..+
T Consensus       199 ~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~  278 (317)
T cd06635         199 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHM  278 (317)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhCh
Confidence                                00                       11123456789999999999999999999998765


Q ss_pred             HHH
Q 044888          114 GLA  116 (154)
Q Consensus       114 ~~~  116 (154)
                      ...
T Consensus       279 ~~~  281 (317)
T cd06635         279 FVL  281 (317)
T ss_pred             hhh
Confidence            543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.57  E-value=5.2e-15  Score=108.81  Aligned_cols=48  Identities=42%  Similarity=0.558  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCC
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPN   56 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~   56 (154)
                      +..|+.+||.|||   ..+|.|||+||.|+|+|.+ +.+||||||.++.+..
T Consensus       130 Yt~Qlfrgl~yLh---~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~  178 (364)
T KOG0658|consen  130 YTYQLFRGLAYLH---SHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVK  178 (364)
T ss_pred             HHHHHHHHHHHHH---hcCcccCCCChheEEEcCCCCeEEeccCCcceeecc
Confidence            4789999999999   5669999999999999965 8899999999988754

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.57  E-value=8.3e-15  Score=108.22  Aligned_cols=51  Identities=39%  Similarity=0.600  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      +...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++....
T Consensus       109 ~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~  159 (309)
T cd07845         109 QVKCLMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYG  159 (309)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccceeeecC
Confidence            35678999999999999   5569999999999999999999999999887654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.57  E-value=1.5e-14  Score=105.28  Aligned_cols=51  Identities=29%  Similarity=0.391  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      +.+.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+....
T Consensus       100 ~~~~~~~~l~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~  150 (283)
T cd07830         100 VIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIR  150 (283)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCCEEEeecccceecc
Confidence            35778999999999999   5569999999999999999999999999886554

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.57  E-value=7.8e-15  Score=110.45  Aligned_cols=50  Identities=30%  Similarity=0.434  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+|++|||++....
T Consensus       120 ~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850         120 MSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence            4567899999999999   5569999999999999999999999999987653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.57  E-value=4.6e-15  Score=106.94  Aligned_cols=105  Identities=30%  Similarity=0.457  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ..+++.|++.||.|||+  ..+++|+||++.||+++.++.++++|||.+..........  ..++..++.||.+.     
T Consensus       102 ~~~~~~~l~~~l~~lH~--~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~--~~~~~~y~~PE~~~~~~~~  177 (265)
T cd06605         102 LGKIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKT--FVGTSSYMAPERIQGNDYS  177 (265)
T ss_pred             HHHHHHHHHHHHHHHcC--CCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhc--ccCChhccCHHHHcCCCCC
Confidence            35789999999999994  1679999999999999999999999999876542211000  11111222221110     


Q ss_pred             -----------------------------------------C---CCCcc-hHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 -----------------------------------------G---KIDPG-CFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 -----------------------------------------~---~~~~~-~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                               .   ..+.. .+..+.+++..||..+|++||++.+++.
T Consensus       178 ~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         178 VKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence                                                     0   01111 4567899999999999999999999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.57  E-value=1.1e-14  Score=108.92  Aligned_cols=51  Identities=33%  Similarity=0.546  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      .+..++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||++....
T Consensus       108 ~~~~i~~qi~~~L~~LH---~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~  158 (337)
T cd07852         108 HKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLS  158 (337)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccchhccc
Confidence            35668999999999999   5669999999999999999999999999887543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.57  E-value=9.4e-15  Score=103.96  Aligned_cols=106  Identities=31%  Similarity=0.426  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++|+|++|.||+++.++.++|+|||.+........ .....+...++.||.+.+   
T Consensus        99 ~~~~i~~~i~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~PE~~~~~~~  174 (253)
T cd05122          99 QIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA-RNTMVGTPYWMAPEVINGKPY  174 (253)
T ss_pred             HHHHHHHHHHHHHHHhh---cCCEecCCCCHHHEEEccCCeEEEeecccccccccccc-ccceecCCcccCHHHHcCCCC
Confidence            34678999999999999   46699999999999999999999999998876544210 111122222222222210   


Q ss_pred             -------------------C----------------------C--CcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------K----------------------I--DPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------~----------------------~--~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                         .                      .  +...+..+.+++..||+.+|++||++.++++
T Consensus       175 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         175 DYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                               0                      0  1112577899999999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.57  E-value=9.3e-15  Score=104.77  Aligned_cols=105  Identities=27%  Similarity=0.308  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL------   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~------   76 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||++....... ......++..++.|+.+      
T Consensus       104 ~~~~~~~i~~~l~~lH---~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~-~~~~~~~~~~y~~pe~~~~~~~~  179 (258)
T cd06632         104 IRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS-FAKSFKGSPYWMAPEVIAQQGGY  179 (258)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccceeccccc-cccccCCCcceeCHHHhcCCCCC
Confidence            4568899999999999   5569999999999999999999999999876543211 00001111111111110      


Q ss_pred             ----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           77 ----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        77 ----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ....+......+.+++.+||+.+|.+||++.+++.
T Consensus       180 ~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         180 GLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             CchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence                                                    01123345678899999999999999999999975

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.57  E-value=1.1e-14  Score=107.09  Aligned_cols=49  Identities=39%  Similarity=0.594  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.+|++|||++...
T Consensus       121 ~~~i~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  169 (310)
T cd07865         121 IKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDGILKLADFGLARAF  169 (310)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCcEEECcCCCcccc
Confidence            4678999999999999   556999999999999999999999999988654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.57  E-value=1.5e-14  Score=104.83  Aligned_cols=107  Identities=22%  Similarity=0.364  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~---   77 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++........  ......++..+++|+.+.   
T Consensus       110 ~~~~~~qi~~~l~~lH---~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  186 (272)
T cd06629         110 VRFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYS  186 (272)
T ss_pred             HHHHHHHHHHHHHHHh---hCCeeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhcccc
Confidence            4567899999999999   55699999999999999999999999998865432100  000011122222221110   


Q ss_pred             ---------------------C-----------------------C----CCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           78 ---------------------G-----------------------K----IDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        78 ---------------------~-----------------------~----~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                                           +                       .    .....+..+.+++..||+.+|++||++.+|
T Consensus       187 ~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  266 (272)
T cd06629         187 QGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTAREL  266 (272)
T ss_pred             CCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence                                 0                       0    111346789999999999999999999999


Q ss_pred             HHH
Q 044888          110 LCN  112 (154)
Q Consensus       110 ~~~  112 (154)
                      ++.
T Consensus       267 l~~  269 (272)
T cd06629         267 LQH  269 (272)
T ss_pred             hhC
Confidence            753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.57  E-value=1.4e-14  Score=105.33  Aligned_cols=49  Identities=29%  Similarity=0.380  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +...++.|++.||.|||   ..+++|+||++.||+++. +.+|++|||++...
T Consensus       101 ~~~~~~~qi~~~L~~LH---~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~  149 (282)
T cd07831         101 RVKSYMYQLLKSLDHMH---RNGIFHRDIKPENILIKD-DILKLADFGSCRGI  149 (282)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEcC-CCeEEEeccccccc
Confidence            35678999999999999   556999999999999999 99999999988755

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.57  E-value=9.9e-15  Score=107.20  Aligned_cols=50  Identities=32%  Similarity=0.507  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ....++.|++.||.|||   ..+++|+|+++.||+++.++.+|++|||.+...
T Consensus       117 ~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~  166 (302)
T cd07864         117 HIKSFMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKGQIKLADFGLARLY  166 (302)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCcEEeCcccccccc
Confidence            35678999999999999   556999999999999999999999999988754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.56  E-value=9.1e-15  Score=117.12  Aligned_cols=113  Identities=23%  Similarity=0.319  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-----------------------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-----------------------   59 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-----------------------   59 (154)
                      -+.|..|||+||.|||   ...++||||...|+|+.....+|+.|||+++.+..+..                       
T Consensus       800 lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~  876 (1177)
T KOG1025|consen  800 LLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRK  876 (1177)
T ss_pred             HHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccC
Confidence            4788999999999999   55599999999999999999999999999998876411                       


Q ss_pred             --------------eeeecccc----------cccccCccccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           60 --------------LCCYQSGT----------LGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        60 --------------~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                    |+....|.          +..++...-+...|+.|+.+++.++.+||..|+..||+|+++...+.+
T Consensus       877 ~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~  956 (1177)
T KOG1025|consen  877 YTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSR  956 (1177)
T ss_pred             CCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHH
Confidence                          11111111          011111112236788999999999999999999999999999988877


Q ss_pred             HHH
Q 044888          116 AWR  118 (154)
Q Consensus       116 ~~~  118 (154)
                      ..+
T Consensus       957 ~ar  959 (1177)
T KOG1025|consen  957 MAR  959 (1177)
T ss_pred             Hhc
Confidence            654

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.56  E-value=9.8e-15  Score=116.65  Aligned_cols=115  Identities=31%  Similarity=0.367  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---C--CcEEEecCCCcccCCCC---cceeeecccccccccCcc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---N--WVAKVSDLGLAKVGPNM---LTLCCYQSGTLGLVVDPF   75 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~--~~~kl~dfg~~~~~~~~---~~~~~~~~g~~~~~~~~~   75 (154)
                      +.+..|++.||++||   +.+|+||||||.|||+..   +  ..++|+|||+++.+...   ++......|+-++++||.
T Consensus       609 ~~~l~q~~~GlaHLH---sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~  685 (903)
T KOG1027|consen  609 ISVLSQIASGLAHLH---SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQ  685 (903)
T ss_pred             HHHHHHHHHHHHHHH---hcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHH
Confidence            456789999999999   566999999999999975   2  56899999999988764   233344578888888888


Q ss_pred             ccCC-----------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           76 LRGK-----------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        76 ~~~~-----------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                      +...                                               ...++  +..+|+.+++..+|..||++.+
T Consensus       686 L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~~~~L~~L~~~~d~--eA~dLI~~ml~~dP~~RPsa~~  763 (903)
T KOG1027|consen  686 LREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGNYTLVHLEPLPDC--EAKDLISRMLNPDPQLRPSATD  763 (903)
T ss_pred             HhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcCccceeeeccCchH--HHHHHHHHhcCCCcccCCCHHH
Confidence            7540                                               11122  7889999999999999999999


Q ss_pred             HH---------HHHHHHHHhcCCC
Q 044888          109 VL---------CNLGLAWRQQGAV  123 (154)
Q Consensus       109 v~---------~~L~~~~~~~~~~  123 (154)
                      |+         ++|+-+.+..+..
T Consensus       764 VL~HPlFW~~ekrL~Fl~dvSDRv  787 (903)
T KOG1027|consen  764 VLNHPLFWDSEKRLSFLRDVSDRV  787 (903)
T ss_pred             HhCCCccCChHHHHHHHHhhhhhh
Confidence            95         3455555544444

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.56  E-value=1.8e-14  Score=104.63  Aligned_cols=51  Identities=37%  Similarity=0.529  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      .+.+++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||.+....
T Consensus        99 ~~~~~~~~i~~~l~~LH---~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~  149 (282)
T cd07829          99 LIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFG  149 (282)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCChheEEEcCCCCEEEecCCcccccC
Confidence            46788999999999999   5569999999999999999999999999887653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.56  E-value=8.7e-15  Score=109.36  Aligned_cols=49  Identities=31%  Similarity=0.531  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.+|++|||++...
T Consensus       109 ~~~i~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~  157 (334)
T cd07855         109 IRYFLYQLLRGLKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMARGL  157 (334)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEecccccceee
Confidence            4678899999999999   556999999999999999999999999988654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.56  E-value=7.4e-15  Score=114.39  Aligned_cols=104  Identities=18%  Similarity=0.155  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe-cCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL-DENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill-~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +..|+.+++.++.|||   ..+++||||+|.|||+ +..++++++|||.++......   ...+-+..+.+||.+.    
T Consensus       417 ~~~w~~~lv~Av~~LH---~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~---~tp~~t~~y~APEvl~~~~y  490 (612)
T KOG0603|consen  417 ASQWAAELVSAVDYLH---EQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSC---DTPALTLQYVAPEVLAIQEY  490 (612)
T ss_pred             HHHHHHHHHHHHHHHH---hcCeeecCCChhheeecCCCCcEEEEEechhhhCchhh---cccchhhcccChhhhccCCC
Confidence            4569999999999999   5679999999999999 588999999999998876541   1112233333333332    


Q ss_pred             --------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 --------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 --------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                            +++....+....+|+.+|++.||.+||++.++...
T Consensus       491 t~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  491 TEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             CcchhhHHHHHHHHHHHhCCCccccCCchHHHHHhhcCCccccccCHHHHHHHHHhccCChhhCcChhhhccC
Confidence                                                  12335567888999999999999999999999753

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.56  E-value=1e-14  Score=105.33  Aligned_cols=106  Identities=23%  Similarity=0.306  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-----c-eeeecccccccccCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-----T-LCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-----~-~~~~~~g~~~~~~~~~~   76 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++.......     + ......++..++.||.+
T Consensus       104 ~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  180 (265)
T cd06631         104 FCKYTKQILDGVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVI  180 (265)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhh
Confidence            4567899999999999   4559999999999999999999999999876532100     0 00001122222222222


Q ss_pred             c----------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           77 R----------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        77 ~----------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                      .                                              ...+...+.++.+++.+||+.+|++||++.+++
T Consensus       181 ~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l  260 (265)
T cd06631         181 NESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLL  260 (265)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence            1                                              122334567889999999999999999999987


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      .
T Consensus       261 ~  261 (265)
T cd06631         261 R  261 (265)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.56  E-value=1e-14  Score=107.74  Aligned_cols=50  Identities=38%  Similarity=0.568  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC----CCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE----NWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~----~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.    ++.+|++|||++....
T Consensus       110 ~~~i~~qi~~~l~~lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~  163 (316)
T cd07842         110 VKSLLWQILNGVHYLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFN  163 (316)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccC
Confidence            3568899999999999   556999999999999999    8999999999887643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.56  E-value=6.1e-15  Score=106.15  Aligned_cols=106  Identities=23%  Similarity=0.306  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +..+++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++.......    ...++..+++|+.+.    
T Consensus        98 ~~~~i~~qi~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~y~~pe~~~~~~~  170 (260)
T cd05611          98 WAKQYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENK----KFVGTPDYLAPETILGVGD  170 (260)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEeecccceeccccc----cCCCCcCccChhhhcCCCC
Confidence            35678999999999999   5569999999999999999999999999876532210    001111111111110    


Q ss_pred             ------------------C-------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 ------------------G-------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 ------------------~-------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                        +                         .....++..+.+++.+||+.+|++||++.++.+.|.
T Consensus       171 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~  250 (260)
T cd05611         171 DKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKS  250 (260)
T ss_pred             cchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHc
Confidence                              0                         111235788999999999999999998766655443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.56  E-value=2.2e-14  Score=104.44  Aligned_cols=51  Identities=31%  Similarity=0.512  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ....++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||.+....
T Consensus       108 ~~~~~~~~i~~al~~LH---~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~  158 (287)
T cd07838         108 TIKDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARIYS  158 (287)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeeccCChhhEEEccCCCEEEeccCcceecc
Confidence            35678999999999999   5569999999999999999999999999886653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.56  E-value=1e-14  Score=106.56  Aligned_cols=111  Identities=21%  Similarity=0.107  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~-----   76 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++........ ......++..+++|+.+     
T Consensus       107 ~~~~~~ql~~~l~~lH---~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  183 (288)
T cd05583         107 VRVYIAEIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSG  183 (288)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCC
Confidence            3567889999999999   56699999999999999999999999998765432110 00011122222222211     


Q ss_pred             -------------------cC-------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           77 -------------------RG-------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        77 -------------------~~-------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                         .+                         ..+...+..+.+++.+||+.+|++|||+.++...
T Consensus       184 ~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~  263 (288)
T cd05583         184 GHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEI  263 (288)
T ss_pred             CCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHH
Confidence                               01                         1122345678999999999999999999998887


Q ss_pred             HHHH
Q 044888          113 LGLA  116 (154)
Q Consensus       113 L~~~  116 (154)
                      |+..
T Consensus       264 l~~~  267 (288)
T cd05583         264 KNHP  267 (288)
T ss_pred             hcCc
Confidence            7754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.56  E-value=8.3e-15  Score=106.93  Aligned_cols=105  Identities=23%  Similarity=0.240  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++........  ....|+..+++||.+..    
T Consensus        99 ~~~i~~qi~~al~~lH---~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~  173 (279)
T cd05633          99 MRFYATEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP--HASVGTHGYMAPEVLQKGTAY  173 (279)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc--cCcCCCcCccCHHHhcCCCCC
Confidence            4678999999999999   55699999999999999999999999998864422110  11123333333332210    


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVL  110 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~  110 (154)
                                                                 ..+...+.++.+++..||+.||.+||     ++.+++
T Consensus       174 ~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~  253 (279)
T cd05633         174 DSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVK  253 (279)
T ss_pred             CchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHH
Confidence                                                       12234567888999999999999999     588776


Q ss_pred             HH
Q 044888          111 CN  112 (154)
Q Consensus       111 ~~  112 (154)
                      +.
T Consensus       254 ~h  255 (279)
T cd05633         254 EH  255 (279)
T ss_pred             hC
Confidence            53

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.55  E-value=8.8e-15  Score=113.28  Aligned_cols=106  Identities=25%  Similarity=0.316  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      .-.|+.++.+||.|||   +.+|+|||+||.|||+++.+.+|++|||+++.+...........|++.||+||.+.+    
T Consensus       102 v~~~a~~LVsaL~yLh---s~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd  178 (808)
T KOG0597|consen  102 VRAIAYDLVSALYYLH---SNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYD  178 (808)
T ss_pred             HHHHHHHHHHHHHHHH---hcCcccccCCcceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCcc
Confidence            3468899999999999   666999999999999999999999999999998876666667789999999998865    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                             .+|...+..+..++..-+++||.+|-+-.+++.
T Consensus       179 ~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  179 HTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             chhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHhhcChhhcccHHHHhc
Confidence                                                   234455667778888888899999988888763

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.55  E-value=1.4e-14  Score=106.43  Aligned_cols=106  Identities=20%  Similarity=0.255  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............++..+++|+.+.+    
T Consensus       118 ~~~~~~ql~~~l~~lH---~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~  194 (292)
T cd06657         118 IAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYG  194 (292)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCC
Confidence            4578899999999999   556999999999999999999999999987554322111111122222333322210    


Q ss_pred             ------------------C------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------K------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------~------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                        .                        .....+..+.+++.+||+.+|.+||++.+++.
T Consensus       195 ~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         195 PEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence                              0                        01124567889999999999999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.55  E-value=2.8e-14  Score=104.41  Aligned_cols=49  Identities=39%  Similarity=0.533  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++...
T Consensus       107 ~~~i~~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  155 (287)
T cd06621         107 LGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGEL  155 (287)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecCCeEEEeeccccccc
Confidence            3578999999999999   556999999999999999999999999987643

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.55  E-value=1.9e-14  Score=106.23  Aligned_cols=111  Identities=22%  Similarity=0.220  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---------------eeecccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---------------CCYQSGT   67 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---------------~~~~~g~   67 (154)
                      ...++.|++.||.|||   +.+++|+|++|.||+++.++.++++|||+++........               .....++
T Consensus       103 ~~~~~~~i~~~l~~lH---~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (305)
T cd05609         103 ARMYFAETVLALEYLH---NYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGT  179 (305)
T ss_pred             HHHHHHHHHHHHHHHH---HCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccC
Confidence            4567889999999999   556999999999999999999999999987642110000               0001122


Q ss_pred             cccccCccccC-------------------------------------------CCC---cchHHHHHHHHHHhhccCCC
Q 044888           68 LGLVVDPFLRG-------------------------------------------KID---PGCFKTFTDIAKKCLADRGC  101 (154)
Q Consensus        68 ~~~~~~~~~~~-------------------------------------------~~~---~~~~~~~~~l~~~C~~~~p~  101 (154)
                      ..+++||.+..                                           ..+   ...+..+.+++.+||+.+|+
T Consensus       180 ~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~  259 (305)
T cd05609         180 PEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPL  259 (305)
T ss_pred             ccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChh
Confidence            33333332211                                           001   13467789999999999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 044888          102 DRPQMGDVLCNLGLA  116 (154)
Q Consensus       102 ~RP~~~~v~~~L~~~  116 (154)
                      +||++.++.+.|+.-
T Consensus       260 ~R~~~~~~~~ll~~~  274 (305)
T cd05609         260 ERLGTGGAFEVKQHR  274 (305)
T ss_pred             hccCccCHHHHHhCc
Confidence            999987777766653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1.3e-14  Score=111.89  Aligned_cols=104  Identities=22%  Similarity=0.187  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCccccC---
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~---   78 (154)
                      ..+..|+..++.++|   ..+|+|.||||.|.|+-+ |.+||.|||++.....+.+.  .....|++.||.||.+..   
T Consensus       463 k~ywkqML~aV~~IH---~~gIVHSDLKPANFLlVk-G~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s  538 (677)
T KOG0596|consen  463 KFYWKQMLLAVKTIH---QHGIVHSDLKPANFLLVK-GRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSS  538 (677)
T ss_pred             HHHHHHHHHHHHHHH---HhceeecCCCcccEEEEe-eeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccc
Confidence            346789999999999   566999999999998864 68999999999988776542  334578888888877632   


Q ss_pred             ------------------------------------------------------CCCc-chHHHHHHHHHHhhccCCCCC
Q 044888           79 ------------------------------------------------------KIDP-GCFKTFTDIAKKCLADRGCDR  103 (154)
Q Consensus        79 ------------------------------------------------------~~~~-~~~~~~~~l~~~C~~~~p~~R  103 (154)
                                                                            +++. ....++.++|..||+.||++|
T Consensus       539 ~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR  618 (677)
T KOG0596|consen  539 SRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKR  618 (677)
T ss_pred             cccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCCchHHHHHHHHHHhcCcccC
Confidence                                                                  1111 123448999999999999999


Q ss_pred             CCHHHHHH
Q 044888          104 PQMGDVLC  111 (154)
Q Consensus       104 P~~~~v~~  111 (154)
                      |++.++++
T Consensus       619 ~si~eLLq  626 (677)
T KOG0596|consen  619 WSIPELLQ  626 (677)
T ss_pred             CCcHHHhc
Confidence            99999975

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.55  E-value=1.6e-14  Score=104.07  Aligned_cols=52  Identities=33%  Similarity=0.342  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ....++.|++.||.|||   +.+++|+|+++.||+++.++.++++|||.+.....
T Consensus        94 ~~~~~~~~i~~~l~~lH---~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~  145 (262)
T cd05572          94 TARFYIACVVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKS  145 (262)
T ss_pred             HHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCc
Confidence            34568899999999999   56699999999999999999999999999876543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.55  E-value=2.9e-14  Score=104.51  Aligned_cols=48  Identities=31%  Similarity=0.524  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVG   54 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~   54 (154)
                      ..++.|++.||.|||   ..+++|+||++.||+++. +..+|++|||++...
T Consensus       105 ~~~~~qi~~aL~~LH---~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~  153 (294)
T PLN00009        105 KTYLYQILRGIAYCH---SHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF  153 (294)
T ss_pred             HHHHHHHHHHHHHHH---hCCeeCCCCCcceEEEECCCCEEEEccccccccc
Confidence            367889999999999   556999999999999985 567899999988654

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.55  E-value=1.8e-14  Score=102.84  Aligned_cols=107  Identities=31%  Similarity=0.359  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--   77 (154)
                      .+..++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||.+........  ......++..+..||.+.  
T Consensus       102 ~~~~~~~~l~~~l~~lh---~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~  178 (260)
T cd06606         102 VIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGE  178 (260)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCC
Confidence            45788999999999999   46699999999999999999999999998776543211  001111222222222111  


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  ...+...+..+.+++.+|++.+|++||++.+++.
T Consensus       179 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         179 EYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence                                                        1223345678999999999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.55  E-value=1.7e-14  Score=103.87  Aligned_cols=106  Identities=26%  Similarity=0.347  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce----eeecccccccccCcccc-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL----CCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~----~~~~~g~~~~~~~~~~~-   77 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++.........    .....++..++.|+.+. 
T Consensus       104 ~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~  180 (267)
T cd06610         104 IATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQ  180 (267)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHcc
Confidence            3567899999999999   566999999999999999999999999987654431110    01112233333333211 


Q ss_pred             ----------------------CCCC---------------------------cchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           78 ----------------------GKID---------------------------PGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        78 ----------------------~~~~---------------------------~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                            +..+                           ...+..+.+++..||+.+|++||++.+
T Consensus       181 ~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  260 (267)
T cd06610         181 VHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEE  260 (267)
T ss_pred             ccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHH
Confidence                                  1000                           134577899999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      |+.
T Consensus       261 ll~  263 (267)
T cd06610         261 LLK  263 (267)
T ss_pred             Hhh
Confidence            975

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.55  E-value=1.8e-14  Score=107.77  Aligned_cols=50  Identities=34%  Similarity=0.592  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++....
T Consensus       108 ~~~i~~ql~~aL~~LH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  157 (336)
T cd07849         108 IQYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARIAD  157 (336)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEECcccceeecc
Confidence            4567899999999999   5569999999999999999999999999886543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.54  E-value=2e-14  Score=106.32  Aligned_cols=105  Identities=29%  Similarity=0.326  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      +...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++........    ..++..+++||.+     
T Consensus       116 ~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~y~aPE~~~~~~~  188 (308)
T cd06634         116 EIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANX----FVGTPYWMAPEVILAMDE  188 (308)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCcccCCCCHHhEEECCCCcEEECCcccceeecCccc----ccCCccccCHHHHhhccc
Confidence            34677899999999999   45699999999999999999999999998765432110    0111112222111     


Q ss_pred             --------------------cC-----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           77 --------------------RG-----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        77 --------------------~~-----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                          .+                       ......+..+.+++.+||+.+|++||++.+|+...
T Consensus       189 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~  268 (308)
T cd06634         189 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR  268 (308)
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCc
Confidence                                00                       01124566788999999999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.54  E-value=1.3e-14  Score=102.42  Aligned_cols=101  Identities=23%  Similarity=0.200  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      .+.||..+|.|.|   ..+|+|||+||.|+++..   ..-+|++|||++..+. +......+.|++.+++||.++.    
T Consensus       115 ~~rQiLeal~yCH---~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~-~g~~~~G~~GtP~fmaPEvvrkdpy~  190 (355)
T KOG0033|consen  115 CIQQILEALAYCH---SNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN-DGEAWHGFAGTPGYLSPEVLKKDPYS  190 (355)
T ss_pred             HHHHHHHHHHHHH---hcCceeccCChhheeeeeccCCCceeecccceEEEeC-CccccccccCCCcccCHHHhhcCCCC
Confidence            4689999999999   566999999999999953   3568999999998887 4455556788999999888754    


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                 +.-+...++..+++.+++..||.+|-|..|.+
T Consensus       191 kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL  265 (355)
T KOG0033|consen  191 KPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEAL  265 (355)
T ss_pred             CcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHh
Confidence                                                       11224567888999999999999999998874

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.54  E-value=1.7e-14  Score=107.67  Aligned_cols=49  Identities=29%  Similarity=0.457  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+|++|.||+++.++.++|+|||++...
T Consensus       107 ~~~~~~qi~~aL~~LH---~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~  155 (332)
T cd07857         107 FQSFIYQILCGLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGLARGF  155 (332)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCCHHHeEEcCCCCEEeCcCCCceec
Confidence            4678999999999999   566999999999999999999999999988654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.54  E-value=1.2e-14  Score=115.73  Aligned_cols=47  Identities=36%  Similarity=0.349  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVG   54 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~   54 (154)
                      .++.|++.||.|||   ..+|+||||||.|||++. ++.+||+|||+++.+
T Consensus       259 ~i~~qll~aL~yLH---~~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l  306 (566)
T PLN03225        259 TIMRQILFALDGLH---STGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADL  306 (566)
T ss_pred             HHHHHHHHHHHHHH---HCCEEeCcCCHHHEEEeCCCCcEEEEeCCCcccc
Confidence            57899999999999   456999999999999985 578999999999754

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.54  E-value=3.6e-14  Score=104.89  Aligned_cols=48  Identities=27%  Similarity=0.305  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+..
T Consensus       103 ~~~~~~~l~~~L~~LH---~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~  150 (314)
T cd08216         103 IAFILKDVLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVS  150 (314)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCcceEEEecCCceEEecCcccee
Confidence            3567899999999999   55699999999999999999999999997653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.54  E-value=2.7e-14  Score=104.15  Aligned_cols=105  Identities=23%  Similarity=0.205  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      .+..++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++........  ....|+..+++||.+.    
T Consensus        98 ~~~~~~~ql~~~l~~lH---~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~  172 (278)
T cd05606          98 EMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP--HASVGTHGYMAPEVLQKGVA  172 (278)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCC--cCcCCCcCCcCcHHhcCCCC
Confidence            45678999999999999   45699999999999999999999999998764432110  1112333333333221    


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCC-----CHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDV  109 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v  109 (154)
                                                                 ...+...+..+.+++.+|+..+|.+||     ++.++
T Consensus       173 ~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~l  252 (278)
T cd05606         173 YDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEV  252 (278)
T ss_pred             CCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHH
Confidence                                                       012223467889999999999999999     88888


Q ss_pred             HH
Q 044888          110 LC  111 (154)
Q Consensus       110 ~~  111 (154)
                      ++
T Consensus       253 l~  254 (278)
T cd05606         253 KE  254 (278)
T ss_pred             Hh
Confidence            64

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.53  E-value=3e-14  Score=102.88  Aligned_cols=105  Identities=27%  Similarity=0.322  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC---cceeeecccccccccCccccC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM---LTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .++++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++......   ........++..+++||.+.+ 
T Consensus       108 ~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  184 (265)
T cd06652         108 TRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGE  184 (265)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCC
Confidence            4678999999999999   555999999999999999999999999988654321   000111123333444443211 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  ..+......+.+++.+||. +|++||++.+|++
T Consensus       185 ~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         185 GYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             CCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence                                                        1122344567789999985 8999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.53  E-value=4.2e-14  Score=102.85  Aligned_cols=52  Identities=37%  Similarity=0.505  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ..+.++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++.....
T Consensus       101 ~~~~i~~~i~~al~~LH---~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~  152 (287)
T cd07840         101 QIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTK  152 (287)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEEcCCCCEEEccccceeeccC
Confidence            35788999999999999   45699999999999999999999999998876543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.53  E-value=2.8e-14  Score=104.56  Aligned_cols=103  Identities=21%  Similarity=0.211  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .+..++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++......   .....++..+++||.+.+   
T Consensus       102 ~~~~~~~qil~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~  175 (290)
T cd05580         102 VARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR---TYTLCGTPEYLAPEIILSKGY  175 (290)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC---CCCCCCCccccChhhhcCCCC
Confidence            35668899999999999   566999999999999999999999999998765432   111122333333332211   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVL  110 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~  110 (154)
                                                              ..+...+..+.+++.+||+.+|.+|+     ++.+++
T Consensus       176 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~  252 (290)
T cd05580         176 GKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIK  252 (290)
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHH
Confidence                                                    12334567888999999999999998     555554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.53  E-value=3.5e-14  Score=103.87  Aligned_cols=47  Identities=34%  Similarity=0.565  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ..++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+..
T Consensus       106 ~~~~~ql~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  152 (291)
T cd07844         106 RLFLFQLLRGLAYCH---QRRVLHRDLKPQNLLISERGELKLADFGLARA  152 (291)
T ss_pred             HHHHHHHHHHHHHHH---hCCeecccCCHHHEEEcCCCCEEECccccccc
Confidence            456889999999999   55699999999999999999999999998754

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.53  E-value=7e-14  Score=106.22  Aligned_cols=105  Identities=25%  Similarity=0.196  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC----CcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN----WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~----~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ...++.|++.++.|||   ..+++|||+||.|+|+...    +.+|++|||++..... ........|++.|++||.+..
T Consensus       137 a~~~~~~il~av~~lH---~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~-~~~~~~~~Gtp~y~APEvl~~  212 (382)
T KOG0032|consen  137 AAGIIRQILEAVKYLH---SLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP-GERLHTIVGTPEYVAPEVLGG  212 (382)
T ss_pred             HHHHHHHHHHHHHHHH---hCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC-CceEeeecCCccccCchhhcC
Confidence            3467899999999999   5779999999999999643    4799999999998876 344556789999999998863


Q ss_pred             -----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                     +.-+..+....+++..++..||.+|+++.++++
T Consensus       213 ~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  213 RPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             CCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence                                                           112345778889999999999999999999988

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.53  E-value=4.2e-14  Score=104.85  Aligned_cols=104  Identities=29%  Similarity=0.358  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +++.++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++.......    ...|+..+++||.+.    
T Consensus       122 ~~~~~~~qi~~al~~LH---~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~  194 (313)
T cd06633         122 EIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPAN----SFVGTPYWMAPEVILAMDE  194 (313)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeecCCCChhhEEECCCCCEEEeecCCCcccCCCC----CccccccccChhhccccCC
Confidence            35678899999999999   5569999999999999999999999999876432211    112333333333321    


Q ss_pred             ---------------------CC-----------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 ---------------------GK-----------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ---------------------~~-----------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                           +.                       .....+..+.+++.+||+.+|.+||++.+++..
T Consensus       195 ~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         195 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                                 00                       011234578899999999999999999999853

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.53  E-value=3.8e-14  Score=105.87  Aligned_cols=50  Identities=28%  Similarity=0.460  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++....
T Consensus       121 ~~~~~~ql~~aL~~LH---~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~  170 (335)
T PTZ00024        121 VKCILLQILNGLNVLH---KWYFMHRDLSPANIFINSKGICKIADFGLARRYG  170 (335)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecccccHHHeEECCCCCEEECCccceeecc
Confidence            4678999999999999   5669999999999999999999999999886554

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.52  E-value=3.1e-14  Score=103.17  Aligned_cols=52  Identities=38%  Similarity=0.464  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ....++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++.....
T Consensus       103 ~~~~i~~ql~~~l~~Lh---~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~  154 (280)
T cd05581         103 CTRFYAAEILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDP  154 (280)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEecCCccccccCC
Confidence            45778999999999999   55699999999999999999999999998876543

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.52  E-value=3.4e-14  Score=106.57  Aligned_cols=49  Identities=33%  Similarity=0.495  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||+++..
T Consensus       119 ~~~~~~qi~~aL~~LH---~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~  167 (342)
T cd07879         119 VQYLVYQMLCGLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLARHA  167 (342)
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCCCCcCC
Confidence            4567899999999999   556999999999999999999999999998654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.52  E-value=2.7e-14  Score=104.47  Aligned_cols=49  Identities=37%  Similarity=0.591  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM   57 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~   57 (154)
                      ++.|+..|++|||.   .-|+|||||++|+|+...|..|++|||+++..+..
T Consensus       182 L~~QlL~glk~lH~---~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp  230 (419)
T KOG0663|consen  182 LMLQLLRGLKHLHD---NWILHRDLKTSNLLLSHKGILKIADFGLAREYGSP  230 (419)
T ss_pred             HHHHHHHHHHHHhh---ceeEecccchhheeeccCCcEEecccchhhhhcCC
Confidence            57899999999995   44999999999999999999999999999988765

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.52  E-value=3.4e-14  Score=107.84  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+||+|||++........ ......|+..+++||.+.+   
T Consensus       144 ~~~~~~qil~aL~~LH---~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~  220 (370)
T cd05621         144 AKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGG  220 (370)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCC
Confidence            4567899999999999   55699999999999999999999999999876543211 1123346666666654321   


Q ss_pred             ----------------------------------------------CCCc--chHHHHHHHHHHhhccCCCC--CCCHHH
Q 044888           79 ----------------------------------------------KIDP--GCFKTFTDIAKKCLADRGCD--RPQMGD  108 (154)
Q Consensus        79 ----------------------------------------------~~~~--~~~~~~~~l~~~C~~~~p~~--RP~~~~  108 (154)
                                                                    ..+.  ..+..+.+++..|++.++.+  |+++.|
T Consensus       221 ~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e  300 (370)
T cd05621         221 DGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEE  300 (370)
T ss_pred             CCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHH
Confidence                                                          0111  23566788899999765543  889998


Q ss_pred             HHHH
Q 044888          109 VLCN  112 (154)
Q Consensus       109 v~~~  112 (154)
                      +++.
T Consensus       301 ~l~h  304 (370)
T cd05621         301 IKQH  304 (370)
T ss_pred             HhcC
Confidence            8764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.52  E-value=4e-14  Score=104.20  Aligned_cols=50  Identities=36%  Similarity=0.588  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++....
T Consensus       117 ~~~i~~~l~~al~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  166 (311)
T cd07866         117 IKCYMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIADFGLARPYD  166 (311)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECcCccchhcc
Confidence            4678999999999999   5569999999999999999999999999886543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.52  E-value=4.1e-14  Score=105.56  Aligned_cols=112  Identities=17%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-----------------------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-----------------------   59 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-----------------------   59 (154)
                      -+.++.|++.|+.|||   ..+++|.|+...|+++++.-.+|++|-.+++-+-+..-                       
T Consensus       398 lV~masQla~am~hlh---~~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~  474 (563)
T KOG1024|consen  398 LVLMASQLAMAMEHLH---NHGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSH  474 (563)
T ss_pred             HHHHHHHHHHHHHHHH---hcCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhh
Confidence            3567899999999999   55699999999999999999999999888876543200                       


Q ss_pred             --------------eeeeccc-ccccccC---------ccccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           60 --------------LCCYQSG-TLGLVVD---------PFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        60 --------------~~~~~~g-~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                    |+....| .++.-+|         ...+-..|-+|+.+++.+|.-||...|++||++.|++.-|.+
T Consensus       475 yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLse  554 (563)
T KOG1024|consen  475 YSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSE  554 (563)
T ss_pred             hcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence                          1111111 1111111         223336778999999999999999999999999999998876


Q ss_pred             HH
Q 044888          116 AW  117 (154)
Q Consensus       116 ~~  117 (154)
                      .-
T Consensus       555 F~  556 (563)
T KOG1024|consen  555 FH  556 (563)
T ss_pred             HH
Confidence            43

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.52  E-value=3.3e-14  Score=103.47  Aligned_cols=49  Identities=35%  Similarity=0.440  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      .+.++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+...
T Consensus        97 ~~~~~~ql~~~l~~lH---~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~  145 (277)
T cd05577          97 AIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVEL  145 (277)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEccCcchhhh
Confidence            4668899999999999   566999999999999999999999999987654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.52  E-value=2.8e-14  Score=104.18  Aligned_cols=108  Identities=24%  Similarity=0.352  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.+++.||.|||+  ..+++|+|+++.|++++.++.++++|||++........  ....|+..+++||.+.+    
T Consensus       105 ~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~--~~~~~~~~~~aPE~~~~~~~~  180 (284)
T cd06620         105 LGKIAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIA--DTFVGTSTYMSPERIQGGKYT  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHH--hcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhcc--CccccCcccCCHHHHccCCCC
Confidence            45788999999999995  24699999999999999999999999998754321110  00112222222221100    


Q ss_pred             ---------------------------------------------------CCC-cchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ---------------------------------------------------KID-PGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ---------------------------------------------------~~~-~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                                         ..+ ...+.++.+++.+||+.+|++||++
T Consensus       181 ~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~  260 (284)
T cd06620         181 VKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTP  260 (284)
T ss_pred             ccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCCcccCcCH
Confidence                                                               001 1245678999999999999999999


Q ss_pred             HHHHHHHH
Q 044888          107 GDVLCNLG  114 (154)
Q Consensus       107 ~~v~~~L~  114 (154)
                      .||++...
T Consensus       261 ~e~~~~~~  268 (284)
T cd06620         261 QQLCAMPP  268 (284)
T ss_pred             HHHhcCcc
Confidence            99987643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.51  E-value=3.4e-14  Score=102.15  Aligned_cols=104  Identities=26%  Similarity=0.205  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL------   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~------   76 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.++++|||.+........ .....|...++.|+.+      
T Consensus       102 ~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~y~~PE~~~~~~~~  177 (258)
T cd05578         102 VKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL-TTSTSGTPGYMAPEVLCRQGYS  177 (258)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCcc-ccccCCChhhcCHHHHcccCCC
Confidence            4678999999999999   56699999999999999999999999998765433210 0011111112121111      


Q ss_pred             ----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCH--HHHH
Q 044888           77 ----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQM--GDVL  110 (154)
Q Consensus        77 ----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~--~~v~  110 (154)
                                                              ....+...+..+.+++.+||+.+|.+||++  .|+.
T Consensus       178 ~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         178 VAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             CcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhccccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence                                                    112344567899999999999999999999  5543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.51  E-value=4.5e-14  Score=101.89  Aligned_cols=106  Identities=30%  Similarity=0.380  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCCCcce----eeecccccccccCcccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPNMLTL----CCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~~~~~----~~~~~g~~~~~~~~~~~   77 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++ .++++|||.+.........    .....++..+++||.+.
T Consensus       105 ~~~~~~ql~~al~~LH---~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~  181 (268)
T cd06630         105 IINYTEQLLRGLSYLH---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLR  181 (268)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhc
Confidence            4678999999999999   55699999999999998765 6899999988655321100    00011222222222211


Q ss_pred             ------------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           78 ------------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        78 ------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                                                                      ...+.....++.+++..||+.+|++||++.++
T Consensus       182 ~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~l  261 (268)
T cd06630         182 GEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSREL  261 (268)
T ss_pred             cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHH
Confidence                                                            11222345788899999999999999999999


Q ss_pred             HH
Q 044888          110 LC  111 (154)
Q Consensus       110 ~~  111 (154)
                      +.
T Consensus       262 l~  263 (268)
T cd06630         262 LK  263 (268)
T ss_pred             hc
Confidence            74

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.51  E-value=4.4e-14  Score=104.61  Aligned_cols=49  Identities=33%  Similarity=0.318  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||++.||+++.++.+++.|||++...
T Consensus       105 ~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~  153 (316)
T cd05574         105 ARFYAAEVLLALEYLH---LLGIVYRDLKPENILLHESGHIMLSDFDLSKQS  153 (316)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeccCCChHHeEEcCCCCEEEeecchhhcc
Confidence            4567899999999999   566999999999999999999999999987654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.51  E-value=2.2e-14  Score=108.51  Aligned_cols=100  Identities=26%  Similarity=0.267  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      +-+|.+|+.||++||   ...|++|||||.|||+|+.|++.|+|+|++.-+.... ......|+.+||+||.+.+     
T Consensus       290 ~FYAAEi~cGLehlH---~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~-~~~~rvGT~GYMAPEvl~ne~Y~~  365 (591)
T KOG0986|consen  290 RFYAAEIICGLEHLH---RRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGK-PIRGRVGTVGYMAPEVLQNEVYDF  365 (591)
T ss_pred             HHHHHHHHhhHHHHH---hcceeeccCChhheeeccCCCeEeeccceEEecCCCC-ccccccCcccccCHHHHcCCcccC
Confidence            345899999999999   4559999999999999999999999999997766532 2223489999999998865     


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                .++...+++..+|...-++.||++|--..
T Consensus       366 s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  366 SPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             CccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence                                                      34455677888888888999998886544

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.51  E-value=1.2e-13  Score=94.10  Aligned_cols=101  Identities=18%  Similarity=0.197  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...|+.|++.||.|||+.   +      |+.||+++.++.+++  ||.+.......     ..|+..|++||.+.+   
T Consensus        18 ~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~-----~~g~~~y~aPE~~~~~~~   81 (176)
T smart00750       18 EIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQ-----SRVDPYFMAPEVIQGQSY   81 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeecccc-----CCCcccccChHHhcCCCC
Confidence            4578999999999999953   2      999999999999998  99887654321     134555666554432   


Q ss_pred             -------------------CC-----------------------------CcchHH--HHHHHHHHhhccCCCCCCCHHH
Q 044888           79 -------------------KI-----------------------------DPGCFK--TFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 -------------------~~-----------------------------~~~~~~--~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                         ..                             +.....  ++.+++.+||+.+|++||++.+
T Consensus        82 ~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~  161 (176)
T smart00750       82 TEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANH  161 (176)
T ss_pred             cchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHH
Confidence                               00                             001112  5899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 044888          109 VLCNLGLAWR  118 (154)
Q Consensus       109 v~~~L~~~~~  118 (154)
                      ++..+..+..
T Consensus       162 ll~~~~~~~~  171 (176)
T smart00750      162 YLAHCRALFA  171 (176)
T ss_pred             HHHHHHHHHH
Confidence            9998887654

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.51  E-value=5.8e-14  Score=104.63  Aligned_cols=46  Identities=26%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA   51 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~   51 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+++.||+..
T Consensus       103 ~~~i~~qi~~~L~~LH---~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~  148 (327)
T cd08227         103 IAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSN  148 (327)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEecCCCChhhEEEecCCcEEEcccchh
Confidence            4678999999999999   556999999999999999999999998643

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.51  E-value=8.3e-14  Score=99.46  Aligned_cols=103  Identities=25%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL------   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~------   76 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++..............++..+..|+..      
T Consensus        95 ~~~~~~qi~~~l~~lh---~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~  171 (250)
T cd05123          95 ARFYAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYG  171 (250)
T ss_pred             HHHHHHHHHHHHHHHH---HCCceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCC
Confidence            4677899999999999   5669999999999999999999999999886543310000011112222222211      


Q ss_pred             -------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           77 -------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        77 -------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                           ....+...+..+.+++.+||..+|++||++.+
T Consensus       172 ~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         172 KAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             chhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence                                                 01233445778899999999999999999954

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.51  E-value=3.9e-14  Score=117.31  Aligned_cols=108  Identities=25%  Similarity=0.240  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHhhcCC----CCCcEeecCCCCcEEecC-----------------CCcEEEecCCCcccCCCCccee
Q 044888            3 RLKICIGAARGLHYLRTGT----RNIIIHRDVKSTNILLDE-----------------NWVAKVSDLGLAKVGPNMLTLC   61 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~----~~~i~h~dl~~~nill~~-----------------~~~~kl~dfg~~~~~~~~~~~~   61 (154)
                      .+.|+.||+.||.|||+..    ..+|+|+||+|.|||++.                 ...+||+|||++...... ...
T Consensus       120 Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~-s~~  198 (1021)
T PTZ00266        120 IVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIE-SMA  198 (1021)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCcccccccc-ccc
Confidence            4678999999999999632    145999999999999964                 234899999998765321 111


Q ss_pred             eecccccccccCccccC------------------------C---------------------C-CcchHHHHHHHHHHh
Q 044888           62 CYQSGTLGLVVDPFLRG------------------------K---------------------I-DPGCFKTFTDIAKKC   95 (154)
Q Consensus        62 ~~~~g~~~~~~~~~~~~------------------------~---------------------~-~~~~~~~~~~l~~~C   95 (154)
                      ....|+..|++||.+.+                        .                     . ....+.++.+|+..|
T Consensus       199 ~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p~lpi~~~S~eL~dLI~~~  278 (1021)
T PTZ00266        199 HSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGPDLPIKGKSKELNILIKNL  278 (1021)
T ss_pred             cccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCCCcCCCCHHHHHHHHHH
Confidence            12245555555554421                        0                     0 012356789999999


Q ss_pred             hccCCCCCCCHHHHHH
Q 044888           96 LADRGCDRPQMGDVLC  111 (154)
Q Consensus        96 ~~~~p~~RP~~~~v~~  111 (154)
                      |+.+|.+||++.|++.
T Consensus       279 L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        279 LNLSAKERPSALQCLG  294 (1021)
T ss_pred             hcCChhHCcCHHHHhc
Confidence            9999999999999984

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.50  E-value=5.1e-14  Score=108.32  Aligned_cols=104  Identities=17%  Similarity=0.259  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      -+++.||..|+.|+|   ...++||||||.|+++. +-+.+|+.|||++..+.+.. .....+|++.|-+||.+-|    
T Consensus       121 ~kYF~QI~~AI~YCH---qLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~-kL~TsCGSLAYSAPEILLGDsYD  196 (864)
T KOG4717|consen  121 KKYFAQIVHAISYCH---QLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGK-KLTTSCGSLAYSAPEILLGDSYD  196 (864)
T ss_pred             HHHHHHHHHHHHHHh---hhhhhcccCCcceeEEeeecCceEeeeccccccCCCcc-hhhcccchhhccCchhhhcCccC
Confidence            367899999999999   55599999999999875 56899999999997766532 2334678888888887765    


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ..|...+.++.+|+..++..||.+|.+..||+.
T Consensus       197 APAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  197 APAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             CcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCchhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence                                                    234456789999999999999999999999974

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.50  E-value=2.5e-15  Score=108.92  Aligned_cols=103  Identities=25%  Similarity=0.332  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-------   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------   78 (154)
                      +..+...||+|||   ...-+|||+|..|||++.++.+|++|||++..+...........|++.+|+|+.+..       
T Consensus       134 iL~~TLKGL~YLH---~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~A  210 (502)
T KOG0574|consen  134 VLRDTLKGLQYLH---DLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKA  210 (502)
T ss_pred             HHHHHHhHHHHHH---HHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhh
Confidence            4566788999999   555899999999999999999999999999888765544455566777776665432       


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                             .-|+..+.++-+++..|+-.+|++|-++.++++
T Consensus       211 DIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  211 DIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             hHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence                                                   123457888999999999999999999988754

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.50  E-value=8.4e-14  Score=101.03  Aligned_cols=103  Identities=23%  Similarity=0.219  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ....++.|++.||.|||   ..+++|+||++.||+++.++ .++++|||++........    ..++..+++||.+.+  
T Consensus       110 ~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~y~aPE~~~~~~  182 (267)
T PHA03390        110 EVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSC----YDGTLDYFSPEKIKGHN  182 (267)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCcc----CCCCCcccChhhhcCCC
Confidence            34678999999999999   55699999999999999888 999999998765433211    112222222222111  


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-HHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-MGDVLC  111 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-~~~v~~  111 (154)
                                                                   ......+..+.+++..||+.+|.+||+ +.++++
T Consensus       183 ~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        183 YDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence                                                         111235678899999999999999995 688863

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.50  E-value=6.3e-14  Score=99.99  Aligned_cols=101  Identities=15%  Similarity=0.039  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----   77 (154)
                      ...++.|++.||.|||   ..+++|+|++|.||+++.++.+++.|||.+........   ...++..+++||...     
T Consensus        87 ~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~  160 (237)
T cd05576          87 VKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCD---GEAVENMYCAPEVGGISEET  160 (237)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEecccchhccccccc---cCCcCccccCCcccCCCCCC
Confidence            4678899999999999   56699999999999999999999999997654332100   000111122222110     


Q ss_pred             ----------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           78 ----------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        78 ----------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                                                        ...+...+..+.+++.+|++.||++||++.+.
T Consensus       161 ~~~DvwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~  226 (237)
T cd05576         161 EACDWWSLGAILFELLTGKTLVECHPSGINTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVA  226 (237)
T ss_pred             chhhHHHHHHHHHHHHHCcchhhcCchhcccccccCCcccCCHHHHHHHHHHccCCHHHhcCCCcc
Confidence                                              01233456788999999999999999997443

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.50  E-value=7.2e-14  Score=106.10  Aligned_cols=107  Identities=22%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||++........ ......|+..+++||.+.+   
T Consensus       144 ~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~  220 (371)
T cd05622         144 ARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGG  220 (371)
T ss_pred             HHHHHHHHHHHHHHHH---HCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCC
Confidence            4567899999999999   56699999999999999999999999999876543211 1122345566666654321   


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCC--CCCHHH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCD--RPQMGD  108 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~--RP~~~~  108 (154)
                                                                      +.....+..+.+++..|+..++.+  ||++.+
T Consensus       221 ~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~e  300 (371)
T cd05622         221 DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEE  300 (371)
T ss_pred             CccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHH
Confidence                                                            011235667889999999844433  778888


Q ss_pred             HHHH
Q 044888          109 VLCN  112 (154)
Q Consensus       109 v~~~  112 (154)
                      +.+.
T Consensus       301 i~~h  304 (371)
T cd05622         301 IKRH  304 (371)
T ss_pred             HhcC
Confidence            8764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=6.5e-14  Score=105.74  Aligned_cols=49  Identities=29%  Similarity=0.308  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.++++|||++...
T Consensus       103 ~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~  151 (364)
T cd05599         103 TRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGL  151 (364)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEeecccceec
Confidence            4568899999999999   556999999999999999999999999998654

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.49  E-value=9.1e-14  Score=111.72  Aligned_cols=104  Identities=29%  Similarity=0.328  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC------
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG------   78 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------   78 (154)
                      -|+.+++.||.+||   ...++|||+|-.|||+..++.+|+.|||++..+....-......|++.+|+||.+.-      
T Consensus       127 YI~re~lrgl~HLH---~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~  203 (953)
T KOG0587|consen  127 YILREILRGLAHLH---NNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDA  203 (953)
T ss_pred             HHHHHHHHHHHHHh---hcceeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCC
Confidence            36788899999999   566999999999999999999999999999887765445556677788887776532      


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                   ..+.....++.+++..|+..|.++||++.++++
T Consensus       204 tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  204 TYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             CcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence                                                         123457889999999999999999999998864

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.48  E-value=1.1e-13  Score=104.76  Aligned_cols=49  Identities=29%  Similarity=0.329  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+||+|||+++..
T Consensus       103 ~~~~~~qi~~aL~~lH---~~givHrDlKp~NILi~~~~~vkL~DFGla~~~  151 (363)
T cd05628         103 TQFYIAETVLAIDSIH---QLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGL  151 (363)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCCEEEeeccCcccc
Confidence            4567899999999999   566999999999999999999999999998754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.48  E-value=1.3e-13  Score=104.89  Aligned_cols=47  Identities=28%  Similarity=0.346  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ..++.|++.||.|||   ..+++||||||.||+++.++.+||+|||++..
T Consensus       104 ~~~~~qi~~aL~~LH---~~givHrDlKp~Nili~~~~~~kL~DFGl~~~  150 (381)
T cd05626         104 RFYIAELTLAIESVH---KMGFIHRDIKPDNILIDLDGHIKLTDFGLCTG  150 (381)
T ss_pred             HHHHHHHHHHHHHHH---hCCeeecCCcHHHEEECCCCCEEEeeCcCCcc
Confidence            456789999999999   56699999999999999999999999998753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.47  E-value=1.2e-13  Score=103.65  Aligned_cols=50  Identities=36%  Similarity=0.529  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++....
T Consensus       120 ~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (343)
T cd07851         120 IQFLVYQILRGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTD  169 (343)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEcccccccccc
Confidence            4678899999999999   5569999999999999999999999999887643

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.47  E-value=1.3e-13  Score=103.47  Aligned_cols=51  Identities=31%  Similarity=0.472  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      +...++.|++.||.|||   ..+++|+||+|.||+++.++.++++|||++....
T Consensus       119 ~~~~i~~qi~~al~~LH---~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~  169 (343)
T cd07880         119 RIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQTD  169 (343)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccccccc
Confidence            34678999999999999   5669999999999999999999999999886543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.47  E-value=1.2e-13  Score=99.91  Aligned_cols=105  Identities=23%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec---CCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~---~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .-.|+.||+.|+.|||+   ..|.||||||.|+|..   .+...||+|||+++.-..... ....+.+++|++|+.+.. 
T Consensus       163 a~eI~~qI~~Av~~lH~---~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~-L~TPc~TPyYvaPevlg~e  238 (400)
T KOG0604|consen  163 ASEIMKQIGLAVRYLHS---MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGD-LMTPCFTPYYVAPEVLGPE  238 (400)
T ss_pred             HHHHHHHHHHHHHHHHh---cchhhccCChhheeeecCCCCcceEecccccccccCCCcc-ccCCcccccccCHHHhCch
Confidence            45689999999999995   4599999999999995   346689999999987653211 112334555555555432 


Q ss_pred             ----------------------------------------------CCCc----chHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 ----------------------------------------------KIDP----GCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 ----------------------------------------------~~~~----~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                                    .+|.    ..+++..+++...+..+|.+|-|+.+
T Consensus       239 KydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~  318 (400)
T KOG0604|consen  239 KYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEE  318 (400)
T ss_pred             hcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHH
Confidence                                                          1222    35677889999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      ++.
T Consensus       319 ~m~  321 (400)
T KOG0604|consen  319 VMD  321 (400)
T ss_pred             hhc
Confidence            974

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.46  E-value=9e-14  Score=101.80  Aligned_cols=95  Identities=23%  Similarity=0.210  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC--------
Q 044888            7 CIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--------   78 (154)
Q Consensus         7 ~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------   78 (154)
                      -.+|.+||.|||++   .|++||+|..|+++|+++++||+|||+++...........++|++.|++|+.+..        
T Consensus       274 GaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVD  350 (516)
T KOG0690|consen  274 GAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVD  350 (516)
T ss_pred             hHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceee
Confidence            56789999999954   4999999999999999999999999999876555555667899999999998864        


Q ss_pred             -----------------------------------CCCcchHHHHHHHHHHhhccCCCCCC
Q 044888           79 -----------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP  104 (154)
Q Consensus        79 -----------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP  104 (154)
                                                         .+|...+.+...+....+..||.+|-
T Consensus       351 WWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFPr~ls~eAktLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  351 WWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFPRTLSPEAKTLLSGLLKKDPKKRL  411 (516)
T ss_pred             hhhhhHHHHHHHhccCcccccchhHHHHHHHhhhccCCccCCHHHHHHHHHHhhcChHhhc
Confidence                                               34555566777788888889999883

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.46  E-value=2.3e-13  Score=99.57  Aligned_cols=48  Identities=35%  Similarity=0.307  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ..++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++...
T Consensus       108 ~~~~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  155 (290)
T cd05613         108 QIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF  155 (290)
T ss_pred             HHHHHHHHHHHHHHH---hCCeeccCCCHHHeEECCCCCEEEeeCccceec
Confidence            346679999999999   566999999999999999999999999988654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.46  E-value=2.2e-13  Score=96.13  Aligned_cols=106  Identities=31%  Similarity=0.289  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +.+.++.+++.++.|||.   .+++|+|+++.||+++.++.++++|||.+....... ......+...++.||...    
T Consensus        88 ~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~pE~~~~~~~  163 (244)
T smart00220       88 EARFYARQILSALEYLHS---NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG-LLTTFVGTPEYMAPEVLLGKGY  163 (244)
T ss_pred             HHHHHHHHHHHHHHHHHH---cCeecCCcCHHHeEECCCCcEEEccccceeeecccc-ccccccCCcCCCCHHHHccCCC
Confidence            456789999999999994   569999999999999999999999999987654421 000111222222222111    


Q ss_pred             ------------------C--------------------CC--Ccc---hHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 ------------------G--------------------KI--DPG---CFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ------------------~--------------------~~--~~~---~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                        +                    ..  ...   .+.++.+++.+||..+|++||++.++++
T Consensus       164 ~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      164 GKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence                              0                    00  011   6678999999999999999999999985

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.45  E-value=2.3e-13  Score=101.60  Aligned_cols=48  Identities=38%  Similarity=0.637  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ..++.|++.||.|||   ..+++|+|+++.|++++.++.++++|||.+...
T Consensus       111 ~~~~~ql~~aL~~LH---~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~  158 (328)
T cd07856         111 QYFLYQILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARIQ  158 (328)
T ss_pred             HHHHHHHHHHHHHHH---hCCcccCCCCHHHEeECCCCCEEeCcccccccc
Confidence            457899999999999   556999999999999999999999999988654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.45  E-value=2.9e-13  Score=100.93  Aligned_cols=44  Identities=39%  Similarity=0.614  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGL   50 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~   50 (154)
                      ..++.|++.||.|||   +.+++|+||||.||+++.++.+++.||+.
T Consensus       104 ~~~~~qi~~aL~~lH---~~~ivHrDlkp~Nill~~~~~~~~~~~~~  147 (328)
T cd08226         104 GNILFGALRGLNYLH---QNGYIHRNIKASHILISGDGLVSLSGLSH  147 (328)
T ss_pred             HHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEeCCCcEEEechHH
Confidence            468899999999999   55699999999999999999999999863

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.45  E-value=2.2e-13  Score=103.37  Aligned_cols=46  Identities=28%  Similarity=0.400  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK   52 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~   52 (154)
                      ..++.|++.||.|||   ..+++||||||.||+++.++.+||+|||++.
T Consensus       104 ~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~  149 (376)
T cd05598         104 RFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (376)
T ss_pred             HHHHHHHHHHHHHHH---HCCeEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence            346889999999999   5669999999999999999999999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.44  E-value=2.2e-13  Score=113.28  Aligned_cols=102  Identities=29%  Similarity=0.306  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ce---eeecccccccccCccccC---
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TL---CCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~---~~~~~g~~~~~~~~~~~~---   78 (154)
                      +-.|++.|+.|||   ..+|+|||+|+.||+++.++.+|..|||.+....... +.   -....|+..||+||.+.+   
T Consensus      1339 yt~qll~gla~LH---~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~ 1415 (1509)
T KOG4645|consen 1339 YTKQLLEGLAYLH---EHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKG 1415 (1509)
T ss_pred             HHHHHHHHHHHHH---hcCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhccccc
Confidence            3578999999999   5669999999999999999999999999998776542 11   113368888999988765   


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                   ..|...+.+=.+++..|++.||++|=++.|++
T Consensus      1416 kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qll 1492 (1509)
T KOG4645|consen 1416 KGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLL 1492 (1509)
T ss_pred             CCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHH
Confidence                                                         34455667778999999999999995555444

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.44  E-value=4.2e-13  Score=100.86  Aligned_cols=50  Identities=34%  Similarity=0.521  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      .+..++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||++...
T Consensus       121 ~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~  170 (345)
T cd07877         121 HVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHT  170 (345)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEcCCCCEEEecccccccc
Confidence            35668999999999999   556999999999999999999999999988654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.44  E-value=4.5e-14  Score=100.68  Aligned_cols=98  Identities=27%  Similarity=0.370  Sum_probs=76.7

Q ss_pred             HHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC------------
Q 044888           11 ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG------------   78 (154)
Q Consensus        11 a~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------   78 (154)
                      ..||.||-.  ...++|||+||+|||++..|.+|+||||.+..+..+.. .....|...||+||++..            
T Consensus       177 V~AL~yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiA-kT~daGCrpYmAPERi~p~~~gyDiRSDvW  253 (361)
T KOG1006|consen  177 VDALDYLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIA-KTVDAGCRPYMAPERIDPSDKGYDIRSDVW  253 (361)
T ss_pred             hhHHHHHHH--HhhhhhccCChhheEEecCCCEeeecccchHhHHHHHH-hhhccCCccccChhccCCccCCcchhhhhh
Confidence            468999975  56699999999999999999999999999988765432 233556677777777643            


Q ss_pred             -------------------------------------CCC---cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------KID---PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------~~~---~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                           ..+   .+....+..++..|+-.|-++||...++.+
T Consensus       254 SLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  254 SLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             hhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence                                                 011   124667888999999999999999999864

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.43  E-value=3.5e-13  Score=101.79  Aligned_cols=49  Identities=29%  Similarity=0.325  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.++|+|||++...
T Consensus       103 ~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~  151 (360)
T cd05627         103 TQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGL  151 (360)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEeeccCCccc
Confidence            3467899999999999   566999999999999999999999999998654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.43  E-value=5.4e-13  Score=102.42  Aligned_cols=96  Identities=29%  Similarity=0.287  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-------
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-------   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------   78 (154)
                      ++..+..|++|||   ..+|++|||||.|++++.++.+|+-|||+++..... ...+.++|++.|++||.+-+       
T Consensus       525 ~~acv~EAfeYLH---~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g-~KTwTFcGTpEYVAPEIILnKGHD~av  600 (732)
T KOG0614|consen  525 YVACVLEAFEYLH---RKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSG-RKTWTFCGTPEYVAPEIILNKGHDRAV  600 (732)
T ss_pred             hHHHHHHHHHHHH---hcCceeccCChhheeeccCCceEEeehhhHHHhccC-CceeeecCCcccccchhhhccCcchhh
Confidence            4556889999999   566999999999999999999999999999988763 45667899999999998744       


Q ss_pred             --------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC
Q 044888           79 --------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ  105 (154)
Q Consensus        79 --------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~  105 (154)
                                                            .+|........+++.+-+..+|..|-.
T Consensus       601 DyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  601 DYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHhhhc
Confidence                                                  234445556667778778888887754

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.43  E-value=7.6e-13  Score=91.15  Aligned_cols=108  Identities=33%  Similarity=0.431  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccCCCCcceeeecccccccccCccccCC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK-   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-   79 (154)
                      .+..++.+++.++.|||   ..+++|+|+++.||+++. ++.++++|||.+..............+...++.|+..... 
T Consensus        93 ~~~~~~~~l~~~l~~lh---~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~  169 (215)
T cd00180          93 EILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKG  169 (215)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccC
Confidence            46778999999999999   456999999999999998 8999999999987665432111122344445555544332 


Q ss_pred             CC---cc-h--------HHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           80 ID---PG-C--------FKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        80 ~~---~~-~--------~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      ..   .+ .        ...+.+++..|++.+|++||++.++++.
T Consensus       170 ~~~~~~D~~~lg~~~~~l~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         170 YYSEKSDIWSLGVILYELPELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence            11   11 1        1578899999999999999999999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.43  E-value=3.9e-13  Score=102.12  Aligned_cols=46  Identities=30%  Similarity=0.399  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK   52 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~   52 (154)
                      ..++.|++.||.|||   ..+++||||||.||+++.++.+|++|||+++
T Consensus       104 ~~~~~ql~~aL~~LH---~~givHrDlkp~NIll~~~~~~kl~DfGla~  149 (377)
T cd05629         104 RFYMAECVLAIEAVH---KLGFIHRDIKPDNILIDRGGHIKLSDFGLST  149 (377)
T ss_pred             HHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEEeeccccc
Confidence            457899999999999   5669999999999999999999999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.42  E-value=1.4e-13  Score=95.05  Aligned_cols=90  Identities=19%  Similarity=0.337  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCCCc--
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDP--   82 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--   82 (154)
                      +||..|..||.|||+  ...++|||+||+|||++.++.+|+||||.+..+.++.. .....|.-.|++||++.+..+.  
T Consensus       152 kIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiA-kt~daGCkpYmaPEri~~e~n~~g  228 (282)
T KOG0984|consen  152 KIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIA-KTMDAGCKPYMAPERINPELNQKG  228 (282)
T ss_pred             HhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccceeehhhhH-HHHhcCCCccCChhhcCcccCccc
Confidence            578899999999998  56699999999999999999999999999998876432 2246788889999998765443  


Q ss_pred             -chHHHHHHHHHHhhc
Q 044888           83 -GCFKTFTDIAKKCLA   97 (154)
Q Consensus        83 -~~~~~~~~l~~~C~~   97 (154)
                       +.-.+++.|..-..+
T Consensus       229 Y~vksDvWSLGItmiE  244 (282)
T KOG0984|consen  229 YSVKSDVWSLGITMIE  244 (282)
T ss_pred             ceeehhhhhhhhhhhh
Confidence             334455655554444

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=6.5e-13  Score=95.95  Aligned_cols=105  Identities=26%  Similarity=0.319  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc---ceeeecccccccccCccccC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML---TLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ..+++.|++.||.|||   ..+++|+|+++.||+++.++.++++|||+++......   .......++..+++||.+.+ 
T Consensus       108 ~~~~~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  184 (264)
T cd06653         108 TRRYTRQILQGVSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGE  184 (264)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCC
Confidence            4678899999999999   5569999999999999999999999999886542210   00001123333333333221 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  ..+......+.+++..||+ +|..||+..+++.
T Consensus       185 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         185 GYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence                                                        1233455678888888888 4688888887754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.42  E-value=4.4e-13  Score=100.19  Aligned_cols=71  Identities=21%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~   76 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+||+|||++........ ......|+..+++||.+
T Consensus       104 ~~~~~~qi~~al~~lH---~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (332)
T cd05623         104 ARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEIL  175 (332)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHH
Confidence            4567899999999999   56699999999999999999999999998865432211 11123456666666543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=5.2e-13  Score=99.83  Aligned_cols=50  Identities=22%  Similarity=0.230  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   ..+++||||++.||+++.++.+||+|||++....
T Consensus       104 ~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  153 (331)
T cd05597         104 ARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLL  153 (331)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCCCEEEEECCceeecC
Confidence            4567899999999999   5569999999999999999999999999986543

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.42  E-value=4e-13  Score=102.18  Aligned_cols=46  Identities=28%  Similarity=0.393  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK   52 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~   52 (154)
                      ..++.|++.||.|||   ..+++||||||.||+++.++.+||+|||++.
T Consensus       104 ~~~~~qi~~al~~lH---~~~ivHrDlKp~NILl~~~g~~kL~DFGla~  149 (382)
T cd05625         104 RFYIAELTCAVESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (382)
T ss_pred             HHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEeECCCCc
Confidence            346789999999999   5569999999999999999999999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.41  E-value=5.5e-13  Score=100.06  Aligned_cols=49  Identities=33%  Similarity=0.628  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+|+++.||+++ .+..++++|||.+...
T Consensus       116 ~~~~~~qi~~aL~~LH---~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~  165 (342)
T cd07854         116 ARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTEDLVLKIGDFGLARIV  165 (342)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCceEEECCcccceec
Confidence            4567899999999999   55699999999999997 4567899999988654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.41  E-value=4.2e-13  Score=104.35  Aligned_cols=105  Identities=22%  Similarity=0.262  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC------
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG------   78 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------   78 (154)
                      .++.|+.++++|+|.   ..++|||||..|++|+.+..+||+|||++.++... .......|+..+.+||...|      
T Consensus       159 ~~F~q~vsaveYcH~---k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~-~~lqt~cgsppyAaPEl~~g~~y~gp  234 (596)
T KOG0586|consen  159 AKFRQIVSAVEYCHS---KNIVHRDLKAENILLDENMNIKIADFGFSTFFDYG-LMLQTFCGSPPYAAPELFNGKKYDGP  234 (596)
T ss_pred             hhhHHHHHHHHHHhh---cceeccccchhhcccccccceeeeccccceeeccc-ccccccCCCCCccChHhhcCcccCCc
Confidence            356889999999995   44999999999999999999999999999887642 22234456666666665544      


Q ss_pred             --------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 --------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 --------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                            ..+.-...++.+++.+.+-.+|.+|+++.++.+.-
T Consensus       235 e~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~  307 (596)
T KOG0586|consen  235 EVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDR  307 (596)
T ss_pred             ceehhhhhhhheeeeecccccCCcccccccchheeeeecccceeechhHHHHHHhhccCccccCCHHHhhhhc
Confidence                                                  12233466788999999999999999999997543

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.40  E-value=2.9e-13  Score=103.90  Aligned_cols=46  Identities=28%  Similarity=0.362  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ++.+...|+.-+|   ..+++||||||.|+|+|..|++||+|||++..+
T Consensus       246 YiaE~vlAI~~iH---~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl  291 (550)
T KOG0605|consen  246 YIAETVLAIESIH---QLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGL  291 (550)
T ss_pred             HHHHHHHHHHHHH---HcCcccccCChhheeecCCCCEeeccccccchh
Confidence            4567888999999   677999999999999999999999999998554

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.40  E-value=8.9e-13  Score=98.58  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce-eeecccccccccCcc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL-CCYQSGTLGLVVDPF   75 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~g~~~~~~~~~   75 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+||+|||++......... .....|+..+++||.
T Consensus       104 ~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~  174 (331)
T cd05624         104 ARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEI  174 (331)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHH
Confidence            3567899999999999   566999999999999999999999999998665432111 112235555555553

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.39  E-value=3.9e-13  Score=97.87  Aligned_cols=50  Identities=38%  Similarity=0.567  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC----CcEEEecCCCcccCCCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN----WVAKVSDLGLAKVGPNM   57 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~----~~~kl~dfg~~~~~~~~   57 (154)
                      +|..||..|+.|||+..   ++||||||.||++..+    |.+||+|||+++.....
T Consensus       136 silwQil~Gv~YLH~NW---vlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~p  189 (438)
T KOG0666|consen  136 SILWQILDGVHYLHSNW---VLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNP  189 (438)
T ss_pred             HHHHHHHhhhHHHhhhh---eeeccCCcceEEEeccCCccCeeEeecccHHHHhhcc
Confidence            57899999999999766   9999999999999777    89999999999987654

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.36  E-value=3.2e-12  Score=95.76  Aligned_cols=46  Identities=30%  Similarity=0.315  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +|.+|..||+|||   -.||++|||||.|||+.++|++-|+||.++...
T Consensus       184 YaAEvl~ALEYLH---mlGivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  184 YAAEVLLALEYLH---MLGIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             HHHHHHHHHHHHH---hhceeeccCCcceeEEecCCcEEeeeccccccC
Confidence            5788999999999   777999999999999999999999999887554

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.35  E-value=3.2e-12  Score=96.35  Aligned_cols=98  Identities=23%  Similarity=0.204  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      +-+|.+||-||-|||   ..+|++||||..|++++..+++||+|||+++...-.......+.|++.|++||.+..     
T Consensus       453 vFYAaEiaigLFFLh---~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgk  529 (683)
T KOG0696|consen  453 VFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGK  529 (683)
T ss_pred             hhhhHHHHHHhhhhh---cCCeeeeeccccceEeccCCceEeeecccccccccCCcceeeecCCCcccccceEEeccccc
Confidence            456899999999999   566999999999999999999999999999876554555667889999999988642     


Q ss_pred             --------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC
Q 044888           79 --------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP  104 (154)
Q Consensus        79 --------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP  104 (154)
                                                            .+|...+.+..+|...-+-.+|.+|-
T Consensus       530 svDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvsyPKslSkEAv~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  530 SVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVSYPKSLSKEAVAICKGLLTKHPGKRL  593 (683)
T ss_pred             chhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCcCcccccHHHHHHHHHHhhcCCcccc
Confidence                                                  34556677778888888888998883

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.32  E-value=7.2e-12  Score=98.08  Aligned_cols=49  Identities=33%  Similarity=0.372  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC--CCcEEEecCCCcccCCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE--NWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~--~~~~kl~dfg~~~~~~~   56 (154)
                      .|+.||+.||.+||   ..+|||+||||+||||..  ...+||.|||.+.+...
T Consensus       293 ~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q  343 (586)
T KOG0667|consen  293 KFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQ  343 (586)
T ss_pred             HHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEecccccccCC
Confidence            57899999999999   566999999999999963  35789999999987654

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=4.7e-12  Score=90.05  Aligned_cols=48  Identities=40%  Similarity=0.707  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      +++.++..||.|+|   ...++|||+|+.|+|++.++..|++|||+++.+.
T Consensus       128 k~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dgilklADFGlar~fs  175 (376)
T KOG0669|consen  128 KVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDGILKLADFGLARAFS  175 (376)
T ss_pred             HHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCceEEeecccccccee
Confidence            46788999999999   5559999999999999999999999999996553

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.27  E-value=3e-12  Score=98.99  Aligned_cols=101  Identities=23%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC---CcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN---WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~---~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ++.||..||.|||   .++|+|+||||.|+|+...   -.+|+||||++++.+.. +......|++.|++||.++.    
T Consensus       669 lvtQIL~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk-sFRrsVVGTPAYLaPEVLrnkGyN  744 (888)
T KOG4236|consen  669 LVTQILVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK-SFRRSVVGTPAYLAPEVLRNKGYN  744 (888)
T ss_pred             HHHHHHHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeecchh-hhhhhhcCCccccCHHHHhhcccc
Confidence            4689999999999   5669999999999999643   46899999999998763 33445567788887777654    


Q ss_pred             -------------------------------------CCCc----chHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 -------------------------------------KIDP----GCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 -------------------------------------~~~~----~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                           .+|+    +......+++..-+|.+-++|-+..+-+
T Consensus       745 rSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~l  817 (888)
T KOG4236|consen  745 RSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSL  817 (888)
T ss_pred             ccccceeeeEEEEEEecccccCCCccchhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhc
Confidence                                                 1121    3455677899999999999999988764

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.26  E-value=4.6e-12  Score=91.10  Aligned_cols=49  Identities=39%  Similarity=0.655  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM   57 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~   57 (154)
                      +..||.+||.|||+.   +|+|||+||.|.|++.+-..|++|||+++....+
T Consensus       161 FlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d  209 (449)
T KOG0664|consen  161 FVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWDQR  209 (449)
T ss_pred             hHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccchh
Confidence            578999999999954   4999999999999999999999999999886543

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.25  E-value=2.5e-11  Score=82.54  Aligned_cols=116  Identities=22%  Similarity=0.208  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCCCcch
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGC   84 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   84 (154)
                      +++.|+.+||.|.|+..   ++|||+||.|.+++.++..|++|||+++.++........+.-++.|--|..+.|..-...
T Consensus       105 sfmlqllrgl~fchshn---vlhrdlkpqnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~t  181 (292)
T KOG0662|consen  105 SFMLQLLRGLGFCHSHN---VLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYST  181 (292)
T ss_pred             HHHHHHHhhhhhhhhhh---hhhccCCcceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhcc
Confidence            57899999999999655   999999999999999999999999999988765444434444455544545544333333


Q ss_pred             HHHHHHHHHHhhccCCCCCCCH--HHHHHHHHHHHHhcCCC
Q 044888           85 FKTFTDIAKKCLADRGCDRPQM--GDVLCNLGLAWRQQGAV  123 (154)
Q Consensus        85 ~~~~~~l~~~C~~~~p~~RP~~--~~v~~~L~~~~~~~~~~  123 (154)
                      +.+++.-..-.-+..-.-||-|  .+|...|.+|-.....+
T Consensus       182 sidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p  222 (292)
T KOG0662|consen  182 SIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTP  222 (292)
T ss_pred             chHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCC
Confidence            3344332222223334456644  57777888877765544

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.25  E-value=2.7e-11  Score=88.31  Aligned_cols=50  Identities=32%  Similarity=0.459  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM   57 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~   57 (154)
                      .|..|++.|++|||   +.+|+||||||+||++..+...|+.|||+++.....
T Consensus       122 ~i~yq~~~~ik~lh---s~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen  122 YILYQMLCGIKHLH---SAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD  171 (369)
T ss_pred             HHHHHHHHHHHHHH---hcceeecccCcccceecchhheeeccchhhcccCcc
Confidence            46799999999999   666999999999999999999999999999776543

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.23  E-value=6.1e-11  Score=90.31  Aligned_cols=106  Identities=27%  Similarity=0.346  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCC-------cceeeecccccccccC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNM-------LTLCCYQSGTLGLVVD   73 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~-------~~~~~~~~g~~~~~~~   73 (154)
                      -.|+.||..||.||.+. .++|+|-||||.|||+..   .+.+||.|||+++++..+       +....-..|++.|+-|
T Consensus       571 RSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPP  649 (775)
T KOG1151|consen  571 RSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPP  649 (775)
T ss_pred             HHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCc
Confidence            46889999999999876 588999999999999953   377899999999998763       1122334555555544


Q ss_pred             cccc-C----------------------------------------------------CCCcchHHHHHHHHHHhhccCC
Q 044888           74 PFLR-G----------------------------------------------------KIDPGCFKTFTDIAKKCLADRG  100 (154)
Q Consensus        74 ~~~~-~----------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p  100 (154)
                      +.+. +                                                    +..+....+..+++.+|+++.-
T Consensus       650 EcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseAkaFIRRCLaYRK  729 (775)
T KOG1151|consen  650 ECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEAKAFIRRCLAYRK  729 (775)
T ss_pred             ceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHHHHHHHHHHHhhh
Confidence            4321 1                                                    1223456778899999999999


Q ss_pred             CCCCCHHHHH
Q 044888          101 CDRPQMGDVL  110 (154)
Q Consensus       101 ~~RP~~~~v~  110 (154)
                      ++|-...++.
T Consensus       730 eDR~DV~qLA  739 (775)
T KOG1151|consen  730 EDRIDVQQLA  739 (775)
T ss_pred             hhhhhHHHHc
Confidence            9998777664

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.23  E-value=2.3e-11  Score=89.79  Aligned_cols=70  Identities=30%  Similarity=0.372  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      +..+|+.||.|||+   .+|++||||..|+|++..+++|+.|+|+++...........++|++.|++|+.+++
T Consensus       356 ys~ei~lal~flh~---rgiiyrdlkldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrg  425 (593)
T KOG0695|consen  356 YSAEICLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRG  425 (593)
T ss_pred             hhHHHHHHHHHHhh---cCeeeeeccccceEEccCCceeecccchhhcCCCCCcccccccCCCcccchhhhcc
Confidence            45678899999995   55999999999999999999999999999876555555667899999999999987

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.23  E-value=4.9e-11  Score=93.75  Aligned_cols=49  Identities=31%  Similarity=0.344  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+|++|||++...
T Consensus       311 ~~~i~~ql~~aL~~lH---~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~  359 (507)
T PLN03224        311 IKGVMRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDM  359 (507)
T ss_pred             HHHHHHHHHHHHHHHH---HCCeecCCCchHhEEECCCCcEEEEeCcCcccc
Confidence            4567899999999999   456999999999999999999999999998654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.19  E-value=2.2e-11  Score=96.07  Aligned_cols=101  Identities=27%  Similarity=0.344  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----C----
Q 044888            7 CIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----G----   78 (154)
Q Consensus         7 ~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~----   78 (154)
                      +.+..+||.|||   +.+-+|||+|-.||++...+.+|++|||.+......+.....+.|+.++|+++.-.    +    
T Consensus       118 cRetl~gl~ylh---s~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynq  194 (829)
T KOG0576|consen  118 CRETLQGLKYLH---SQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQ  194 (829)
T ss_pred             Hhhhhccchhhh---cCCcccccccccceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccc
Confidence            467778999999   56689999999999999999999999999988777666666777888888776531    1    


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                 .-.......+-+++..|+-.+|++||+...++
T Consensus       195 lcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL  269 (829)
T KOG0576|consen  195 LCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLL  269 (829)
T ss_pred             cccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhhe
Confidence                                                       11223567788999999999999999998764

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.15  E-value=7.2e-11  Score=91.57  Aligned_cols=115  Identities=23%  Similarity=0.317  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC--cc----------------------
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LT----------------------   59 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~--~~----------------------   59 (154)
                      ..++.+++.||.|+|+  ++...|+.+++.|++++..+.+|++|||+.......  ..                      
T Consensus        51 ~s~~rdi~~Gl~ylh~--s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~  128 (484)
T KOG1023|consen   51 LSFIRDISKGLAYLHN--SPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALS  128 (484)
T ss_pred             HHHHHHHHHHHHHHhc--CcceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhccccc
Confidence            4578999999999996  333499999999999999999999999998777320  00                      


Q ss_pred             ee----eeccccccc--------------------------ccCc-------cccCCCC-c-chHHHHHHHHHHhhccCC
Q 044888           60 LC----CYQSGTLGL--------------------------VVDP-------FLRGKID-P-GCFKTFTDIAKKCLADRG  100 (154)
Q Consensus        60 ~~----~~~~g~~~~--------------------------~~~~-------~~~~~~~-~-~~~~~~~~l~~~C~~~~p  100 (154)
                      ..    ....|.++.                          ++..       .+++... . ....++..++..||..+|
T Consensus       129 ~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P  208 (484)
T KOG1023|consen  129 QSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIP  208 (484)
T ss_pred             ccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccCh
Confidence            00    000111100                          0000       0000100 1 334478899999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhc
Q 044888          101 CDRPQMGDVLCNLGLAWRQQ  120 (154)
Q Consensus       101 ~~RP~~~~v~~~L~~~~~~~  120 (154)
                      +.||++.+|-..++.+....
T Consensus       209 ~~rPs~~~i~~~~~~~~~~~  228 (484)
T KOG1023|consen  209 EKRPSIEQIRSKLLTINKGG  228 (484)
T ss_pred             hhCccHHHHHhhhhhhcccc
Confidence            99999999998888776644

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.10  E-value=6.1e-10  Score=82.96  Aligned_cols=50  Identities=24%  Similarity=0.303  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC--------------------CCcEEEecCCCcccCCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE--------------------NWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~--------------------~~~~kl~dfg~~~~~~~   56 (154)
                      -.|+.|++.++.|||   +..++|.||||.|||+..                    +..+++.|||.+.+...
T Consensus       195 r~m~~QL~~sv~fLh---~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e  264 (415)
T KOG0671|consen  195 RHMGYQLLESVAFLH---DLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHE  264 (415)
T ss_pred             HHHHHHHHHHHHHHH---hcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceecc
Confidence            357899999999999   666999999999999832                    23478999999877654

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=3.2e-10  Score=90.91  Aligned_cols=104  Identities=24%  Similarity=0.210  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc----eeeecccccccccCccccCC-
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT----LCCYQSGTLGLVVDPFLRGK-   79 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~-   79 (154)
                      .+..|+..|+.|+|   ..++.|||+|+.|+++..++.+|++|||.+....-...    ......|+-.|++||.+.+. 
T Consensus       424 c~fKqL~~Gv~y~h---~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~  500 (601)
T KOG0590|consen  424 CFFKQLLRGVKYLH---SMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKE  500 (601)
T ss_pred             HHHHHHHHHHHHHH---hcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccc
Confidence            46789999999999   66699999999999999999999999998866543221    22334556666666665430 


Q ss_pred             ----------------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           80 ----------------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        80 ----------------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                          .....+.....++.+.++.+|.+|-++.
T Consensus       501 ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~  580 (601)
T KOG0590|consen  501 YDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIE  580 (601)
T ss_pred             cCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHH
Confidence                                                                0012455677899999999999999999


Q ss_pred             HHHH
Q 044888          108 DVLC  111 (154)
Q Consensus       108 ~v~~  111 (154)
                      +|++
T Consensus       581 ~i~~  584 (601)
T KOG0590|consen  581 QILN  584 (601)
T ss_pred             HHhh
Confidence            9974

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.07  E-value=2.7e-10  Score=86.27  Aligned_cols=50  Identities=34%  Similarity=0.293  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecC-CCCcEEecCCCcEEEecCCCcccCCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDV-KSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl-~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ..++.+++.||.|||   ..+++|||| ||.||+++.++.++|+|||+++....
T Consensus       114 ~~~~~~i~~aL~~lH---~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~  164 (365)
T PRK09188        114 PAWFRSAHRALRDLH---RAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRR  164 (365)
T ss_pred             HHHHHHHHHHHHHHH---HCCCeeCCCCCcceEEEcCCCCEEEEECccceeccc
Confidence            467889999999999   566999999 99999999889999999999986544

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.06  E-value=1.6e-10  Score=90.13  Aligned_cols=86  Identities=23%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCCCcch
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGC   84 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   84 (154)
                      -|+.||+.|+++||   +.+|+|||+|-.|+.++.+|.+|+.|||.+......  ..-.+.|++.+.+||.++|......
T Consensus       674 ~IFkQV~agi~hlh---~~~ivhrdikdenvivd~~g~~klidfgsaa~~ksg--pfd~f~gtv~~aapevl~g~~y~gk  748 (772)
T KOG1152|consen  674 LIFKQVVAGIKHLH---DQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSG--PFDVFVGTVDYAAPEVLGGEKYLGK  748 (772)
T ss_pred             HHHHHHHhcccccc---ccCceecccccccEEEecCCeEEEeeccchhhhcCC--CcceeeeeccccchhhhCCCccCCC
Confidence            47899999999999   677999999999999999999999999998766432  2235689999999999999888888


Q ss_pred             HHHHHHHHHHh
Q 044888           85 FKTFTDIAKKC   95 (154)
Q Consensus        85 ~~~~~~l~~~C   95 (154)
                      +.+++.|...-
T Consensus       749 ~qdiwalgill  759 (772)
T KOG1152|consen  749 PQDIWALGILL  759 (772)
T ss_pred             cchhhhhhhee
Confidence            88888876543

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.04  E-value=4.5e-10  Score=91.39  Aligned_cols=51  Identities=41%  Similarity=0.578  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ..+|+.|++.||.|||   ..+|+|+||+|.||+++.++.++|+|||+++....
T Consensus       106 ~~~i~~qil~aL~yLH---~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~  156 (669)
T cd05610         106 AVKYISEVALALDYLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLN  156 (669)
T ss_pred             HHHHHHHHHHHHHHHH---hCCEEeCCccHHHEEEcCCCCEEEEeCCCCccccC
Confidence            4678999999999999   45699999999999999999999999999987543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.03  E-value=4.6e-10  Score=93.05  Aligned_cols=69  Identities=25%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~   77 (154)
                      +...+..||.-+|   ..|++|||+||.|+|+|..|++||+|||.+-.+..+.+ ......|++.|+.|+.+.
T Consensus       180 Y~aEiVlAldslH---~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLq  249 (1317)
T KOG0612|consen  180 YTAEIVLALDSLH---SMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQ  249 (1317)
T ss_pred             HHHHHHHHHHHHH---hccceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHH
Confidence            4567889999999   67799999999999999999999999999877775444 445668999999888773

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.00  E-value=8.1e-10  Score=79.68  Aligned_cols=116  Identities=17%  Similarity=0.266  Sum_probs=80.6

Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEe--c--CCCc---ccCCCC-cc-------------
Q 044888            1 MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVS--D--LGLA---KVGPNM-LT-------------   59 (154)
Q Consensus         1 ~~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~--d--fg~~---~~~~~~-~~-------------   59 (154)
                      .|.+++|+++|+|+.|||+-. +-+....|.+..+++|.+.+++++  |  |.+.   +...+. .+             
T Consensus       289 sqav~faldiargmaflhsle-p~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~pawmspealqrkped~n~  367 (448)
T KOG0195|consen  289 SQAVRFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYSPAWMSPEALQRKPEDLNI  367 (448)
T ss_pred             chHHHHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhheecccceeeeeccccccCcccCCHHHHhcCchhcch
Confidence            367899999999999999863 446666799999999998877664  2  2211   111110 00             


Q ss_pred             ------------e-----eeecc-----cccccccCccccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 044888           60 ------------L-----CCYQS-----GTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus        60 ------------~-----~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~  117 (154)
                                  |     ...+.     ..-..++-|.++...|+..+..+..++.-|+..||.+||.|..|+-.|+++.
T Consensus       368 raadmwsfaillwel~trevpfadlspmecgmkialeglrv~ippgis~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  368 RAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             hhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccccCCCCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence                        0     00000     0001234456666788889999999999999999999999999999998763

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.98  E-value=7.1e-10  Score=76.88  Aligned_cols=52  Identities=15%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...+++.|++.++.++|+  ..+++|+|++|.||+++ ++.+++.|||++.....
T Consensus       118 ~~~~i~~~l~~~l~~lH~--~~givHrDlkP~NIll~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         118 EAEELYEQVVEQMRRLYQ--EAGLVHGDLSEYNILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             HHHHHHHHHHHHHHHHHH--hCCEecCCCChhhEEEE-CCCEEEEEcccceecCC
Confidence            356789999999999995  15699999999999998 78999999999976643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=98.97  E-value=1.2e-09  Score=86.85  Aligned_cols=91  Identities=26%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec--CCC--cEEEecCCCcccCCCCcceeeecccccccccCccccC-
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--ENW--VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~--~~~--~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      +.+..+++.||.|||   ..+|+||||||.||++-  .++  --||+|||.++.+... +......|+..|+.|+.+.. 
T Consensus       123 l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~-s~~~S~vGT~~YLhPel~E~q  198 (732)
T KOG4250|consen  123 LDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDN-SLFTSLVGTEEYLHPELYERQ  198 (732)
T ss_pred             HHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCC-CeeeeecCchhhcChHHHhhc
Confidence            567789999999999   56699999999999984  323  3599999999988774 46667789999999998873 


Q ss_pred             -CCCc-chHHHHHHHHHHhhcc
Q 044888           79 -KIDP-GCFKTFTDIAKKCLAD   98 (154)
Q Consensus        79 -~~~~-~~~~~~~~l~~~C~~~   98 (154)
                       .+.. -..+.+.-.+..|.--
T Consensus       199 ~~y~~tVDLWS~GvtlY~caTG  220 (732)
T KOG4250|consen  199 KKYTATVDLWSFGVTLYECATG  220 (732)
T ss_pred             cCcCceeehhhhhhHHHHHhcc
Confidence             3332 2244444445555543

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=98.93  E-value=1.9e-08  Score=72.52  Aligned_cols=49  Identities=24%  Similarity=0.488  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec--CCCcEEEecCCCcccCCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--ENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~--~~~~~kl~dfg~~~~~~~   56 (154)
                      +++.|+++|+.|||+   ..++|||||..|||+-  +...+|++|||.+...+.
T Consensus       125 ~v~~ql~SAi~fMHs---knlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~  175 (378)
T KOG1345|consen  125 KVFAQLLSAIEFMHS---KNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGT  175 (378)
T ss_pred             HHHHHHHHHHHHhhc---cchhhcccccceEEEecCCccEEEeeecccccccCc
Confidence            578999999999995   5599999999999984  345799999999876543

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.93  E-value=2.2e-09  Score=78.84  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC---cEEEecCCCcccCCC--Ccc-----eeeecccccccccC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW---VAKVSDLGLAKVGPN--MLT-----LCCYQSGTLGLVVD   73 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~---~~kl~dfg~~~~~~~--~~~-----~~~~~~g~~~~~~~   73 (154)
                      -++..+|+.||.|||   .++|.||||||.|||-....   -+||+||.+......  +.+     ......|+..+|+|
T Consensus       179 s~vvkdia~aLdFlH---~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAP  255 (463)
T KOG0607|consen  179 SRVVKDIASALDFLH---TKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAP  255 (463)
T ss_pred             HHHHHHHHHHHHHHh---hcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcch
Confidence            467899999999999   67799999999999986443   379999977644321  111     11234567777777


Q ss_pred             ccc
Q 044888           74 PFL   76 (154)
Q Consensus        74 ~~~   76 (154)
                      |..
T Consensus       256 EVV  258 (463)
T KOG0607|consen  256 EVV  258 (463)
T ss_pred             hHH
Confidence            654

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.90  E-value=1.8e-09  Score=75.01  Aligned_cols=49  Identities=12%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHh-hcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYL-RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~L-H~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      -.+++.|++.+|.|+ |   ..+++|+|++|.||+++ ++.+++.|||++....
T Consensus       119 ~~~i~~qi~~~L~~l~H---~~giiHrDlkP~NIli~-~~~v~LiDFG~a~~~~  168 (190)
T cd05147         119 ARELYLQVIQIMRILYQ---DCRLVHADLSEYNLLYH-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEE-CCcEEEEEccccccCC
Confidence            357789999999999 6   45699999999999998 4689999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.87  E-value=1.3e-08  Score=76.96  Aligned_cols=108  Identities=19%  Similarity=0.129  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec--CC--CcEEEecCCCcccCCC------Ccceeeeccccccccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--EN--WVAKVSDLGLAKVGPN------MLTLCCYQSGTLGLVV   72 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~--~~--~~~kl~dfg~~~~~~~------~~~~~~~~~g~~~~~~   72 (154)
                      +.-+..|+.+|+.|||   ..++.|||+|+.|||+.  ++  -...++|||.+---..      ..++.....|+...|+
T Consensus       343 ~~~~laQlLEav~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmA  419 (598)
T KOG4158|consen  343 GRVILAQLLEAVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMA  419 (598)
T ss_pred             HHHHHHHHHHHHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecc
Confidence            3446789999999999   67799999999999983  33  3468999997633221      1122222223322333


Q ss_pred             Ccccc---------------------------------------------------CCCCcchHHHHHHHHHHhhccCCC
Q 044888           73 DPFLR---------------------------------------------------GKIDPGCFKTFTDIAKKCLADRGC  101 (154)
Q Consensus        73 ~~~~~---------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~  101 (154)
                      ||...                                                   ...+..++..+.+++..-++.||.
T Consensus       420 PEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLPalp~~vpp~~rqlV~~lL~r~ps  499 (598)
T KOG4158|consen  420 PEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLPALPSRVPPVARQLVFDLLKRDPS  499 (598)
T ss_pred             hhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhCCCCcccCChHHHHHHHHHhcCCcc
Confidence            32221                                                   134556788899999999999999


Q ss_pred             CCCCHHHHHHHH
Q 044888          102 DRPQMGDVLCNL  113 (154)
Q Consensus       102 ~RP~~~~v~~~L  113 (154)
                      +|++..-....|
T Consensus       500 kRvsp~iAANvl  511 (598)
T KOG4158|consen  500 KRVSPNIAANVL  511 (598)
T ss_pred             ccCCccHHHhHH
Confidence            998866544443

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.84  E-value=3.5e-09  Score=83.86  Aligned_cols=45  Identities=29%  Similarity=0.392  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            7 CIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         7 ~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +.++..|+++.|   ..|+|||||||.|||+|.+|++||.|||++..+
T Consensus       735 IAEltcAiesVH---kmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  735 IAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             HHHHHHHHHHHH---hccceecccCccceEEccCCceeeeeccccccc
Confidence            456889999999   788999999999999999999999999998654

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.82  E-value=7.5e-09  Score=72.64  Aligned_cols=49  Identities=35%  Similarity=0.362  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecC-CCCcEEecCCCcEEEecCCCcccCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDV-KSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl-~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      +.++.|+..+|.++|   ..+++|+|| ++.||+++.++.++|+|||++....
T Consensus        94 ~~~~~qi~~~L~~lH---~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~  143 (218)
T PRK12274         94 LAYFRAARRLLQQLH---RCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN  143 (218)
T ss_pred             HHHHHHHHHHHHHHH---HCcCccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence            356788999999999   566999999 7999999999999999999997544

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.76  E-value=3.3e-08  Score=76.86  Aligned_cols=49  Identities=27%  Similarity=0.419  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPN   56 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~   56 (154)
                      .++.|+..||..|-   ..+|+|.||||.|||++.. ...||||||.+.....
T Consensus       540 sYaqQLflALklLK---~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~e  589 (752)
T KOG0670|consen  540 SYAQQLFLALKLLK---KCGVLHADIKPDNILVNESKNILKLCDFGSASFASE  589 (752)
T ss_pred             HHHHHHHHHHHHHH---hcCeeecccCccceEeccCcceeeeccCcccccccc
Confidence            46889999999998   6779999999999999866 5569999999877654

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.73  E-value=2.3e-08  Score=70.65  Aligned_cols=49  Identities=29%  Similarity=0.356  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccCCCC
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVGPNM   57 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~~~~   57 (154)
                      ++.++..||.|+|   +.||+|||+||.|++++. ....++.|+|++.+..+.
T Consensus       137 Y~~elLkALdyCH---S~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~  186 (338)
T KOG0668|consen  137 YIYELLKALDYCH---SMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG  186 (338)
T ss_pred             HHHHHHHHHhHHH---hcCcccccCCcceeeechhhceeeeeecchHhhcCCC
Confidence            4688999999999   666999999999999984 467899999999887654

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.71  E-value=1.5e-07  Score=70.36  Aligned_cols=116  Identities=22%  Similarity=0.192  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-----CcEEEecCCCcccCC---CCc---ce----eeeccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-----WVAKVSDLGLAKVGP---NML---TL----CCYQSG   66 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-----~~~kl~dfg~~~~~~---~~~---~~----~~~~~g   66 (154)
                      +.++|+.|+..+|++||   +.+++|||+||.|++++..     ..+.+.|||+++...   ...   ..    .....|
T Consensus       123 T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rG  199 (322)
T KOG1164|consen  123 TVLRIAIQNLNALEDLH---SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRG  199 (322)
T ss_pred             HHHHHHHHHHHHHHHHH---hcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCC
Confidence            57889999999999999   6679999999999999865     468999999998221   110   00    011223


Q ss_pred             cccccc----------------------CccccC-------------------------C-CCcchHHHHHHHHHHhhcc
Q 044888           67 TLGLVV----------------------DPFLRG-------------------------K-IDPGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        67 ~~~~~~----------------------~~~~~~-------------------------~-~~~~~~~~~~~l~~~C~~~   98 (154)
                      +..+..                      -+...+                         . .....+..+..+...+-..
T Consensus       200 T~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (322)
T KOG1164|consen  200 TLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAKILEYIDSL  279 (322)
T ss_pred             ccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHHHHHHhhcc
Confidence            322221                      111111                         0 1122456677777777778


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhc
Q 044888           99 RGCDRPQMGDVLCNLGLAWRQQ  120 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~~~~  120 (154)
                      +...+|....+...|+......
T Consensus       280 ~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  280 DYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             CCcCCCCHHHHHHHHHHHHHhc
Confidence            8999999999988888777655

>smart00090 RIO RIO-like kinase

Probab=98.68  E-value=3.2e-08  Score=71.02  Aligned_cols=49  Identities=14%  Similarity=0.185  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCC-cEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            4 LKICIGAARGLHYLRTGTRNI-IIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~-i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ..++.|++.++.+||   ..+ ++|+|++|.||+++ ++.+++.|||.+.....
T Consensus       151 ~~i~~qi~~~l~~LH---~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      151 FELYDDILEEMRKLY---KEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             HHHHHHHHHHHHHHH---hcCCEEeCCCChhhEEEE-CCCEEEEEChhhhccCC
Confidence            578999999999999   677 99999999999999 78899999999875543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.67  E-value=4.4e-08  Score=68.24  Aligned_cols=49  Identities=18%  Similarity=0.117  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ..++.+++.++.++|   ..+++|+|++|.|++++.++.+++.|||.+....
T Consensus       128 ~~~~~~i~~~l~~lh---~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         128 EEVLDEILEEIVKAY---KHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             HHHHHHHHHHHHHHH---HCCCCcCCCCcccEEEcCCCcEEEEECCccccCC
Confidence            467889999999999   4669999999999999999999999999986544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.66  E-value=1.8e-07  Score=65.52  Aligned_cols=107  Identities=18%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCCCc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDP   82 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   82 (154)
                      +..++.+++.+|.++|   ..+++|+|++|.|++++ ++.+++.|||.+.......     ....-.......+... .+
T Consensus        97 ~~~i~~~i~~~l~~lH---~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~~~~~-----~~~~~~~~~~~~~~~~-~~  166 (211)
T PRK14879         97 ELELSREIGRLVGKLH---SAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFSKDLE-----DRAVDLHVLLRSLEST-HP  166 (211)
T ss_pred             HHHHHHHHHHHHHHHH---hCCcccCCCCcccEEEE-CCCEEEEECCcccCCCcHH-----hhhccHHHHHHHhhcc-Cc
Confidence            5688999999999999   56699999999999999 7889999999987643211     0000001111111111 12


Q ss_pred             chHHHHHHHHHHhhccCCCC-CCCHHHHHHHHHHHHHhcCC
Q 044888           83 GCFKTFTDIAKKCLADRGCD-RPQMGDVLCNLGLAWRQQGA  122 (154)
Q Consensus        83 ~~~~~~~~l~~~C~~~~p~~-RP~~~~v~~~L~~~~~~~~~  122 (154)
                      ....++++.   ++..-+.. .++..++.+.++.+......
T Consensus       167 ~~~~~~~~~---f~~gY~~~~~~~~~~~~~~~~~i~~~~~~  204 (211)
T PRK14879        167 DWAEELFEA---FLEGYREVMGEKAEEVLERVKEIRLRGRY  204 (211)
T ss_pred             chHHHHHHH---HHHHHHHhhcccHHHHHHHHHHHHHhcCc
Confidence            222333333   33322223 47899999999988876544

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.62  E-value=5.6e-08  Score=69.86  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ..+.+++.+|.+||   ..+++|+|++|.||+++.++.++++|||.+...
T Consensus       146 ~~~~~i~~~l~~lH---~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        146 EQWQAIGQLIARFH---DAGVYHADLNAHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             HHHHHHHHHHHHHH---HCCCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence            34678999999999   667999999999999998889999999998654

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.60  E-value=1.1e-07  Score=75.83  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      +..++.+++.+|.|||   ..+++|+|++|.||++ .++.++++|||+++...
T Consensus       430 ~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl-~~~~~~liDFGla~~~~  478 (535)
T PRK09605        430 NPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             HHHHHHHHHHHHHHHH---hCCCccCCCChHHEEE-ECCcEEEEeCcccccCC
Confidence            4678899999999999   5669999999999999 57789999999997753

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.57  E-value=2.1e-07  Score=64.98  Aligned_cols=92  Identities=26%  Similarity=0.218  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccCCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRGKID   81 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~   81 (154)
                      ...++.+++.++.|||   ..+++|+|+++.|++++.++.++++|||.+........ ......+...++.++......+
T Consensus       100 ~~~~~~~l~~~l~~lh---~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~  176 (225)
T smart00221      100 ARFYLRQILEALEYLH---SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKG  176 (225)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCC
Confidence            5678899999999999   45699999999999999999999999999877654320 1112234455666665522222


Q ss_pred             cchHHHHHHHHHHhhc
Q 044888           82 PGCFKTFTDIAKKCLA   97 (154)
Q Consensus        82 ~~~~~~~~~l~~~C~~   97 (154)
                      .....+++.++..+++
T Consensus       177 ~~~~~Dv~~lG~~~~~  192 (225)
T smart00221      177 YGEAVDIWSLGVILYE  192 (225)
T ss_pred             CCchhhHHHHHHHHHH
Confidence            2225555655544333

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=98.53  E-value=2.6e-07  Score=67.80  Aligned_cols=49  Identities=24%  Similarity=0.314  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      |+.+-.|+.+-+++||   ..+++|+||+++|++++.+|.+.|+||+.....
T Consensus       147 rl~lT~Q~I~lvA~Lh---~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~  195 (288)
T PF14531_consen  147 RLSLTVQMIRLVANLH---SYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRA  195 (288)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEE-TTS-EEE--GGGEEET
T ss_pred             HHHHHHHHHHHHHHHh---hcceEecccceeeEEEcCCCCEEEcChHHHeec
Confidence            5667788999999999   556999999999999999999999999765444

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.52  E-value=1.8e-07  Score=64.29  Aligned_cols=50  Identities=18%  Similarity=0.100  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ..+++.+++.++.++|.  ..+++|+|++|.|++++ ++.+++.|||.+....
T Consensus       116 ~~~~~~~~~~~l~~lh~--~~~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119         116 PEELYDQILELMRKLYR--EAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             HHHHHHHHHHHHHHHhh--ccCcCcCCCChhhEEEE-CCcEEEEECccccccc
Confidence            45688999999999994  16699999999999999 8899999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.48  E-value=3.1e-07  Score=63.77  Aligned_cols=47  Identities=23%  Similarity=0.324  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      .++.+++.+|.++|   ..+++|+|+++.|++++ ++.+++.|||.+....
T Consensus        94 ~~~~~i~~~l~~lH---~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~  140 (199)
T TIGR03724        94 ELLREIGRLVGKLH---KAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYSD  140 (199)
T ss_pred             HHHHHHHHHHHHHH---HCCeecCCCCcceEEEE-CCcEEEEECCCCcCCC
Confidence            67899999999999   56699999999999999 7899999999987643

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.44  E-value=6.2e-07  Score=58.68  Aligned_cols=53  Identities=26%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      +..++.+++.++.++|.....+++|+|+++.|+++++.+.+++.||+.+....
T Consensus        88 ~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~  140 (155)
T cd05120          88 KEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYGP  140 (155)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCCC
Confidence            46778899999999996544679999999999999998899999999886543

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.43  E-value=8.3e-07  Score=64.38  Aligned_cols=87  Identities=34%  Similarity=0.411  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCCCcc------eeeecccccccccCcc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPNMLT------LCCYQSGTLGLVVDPF   75 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~~~~------~~~~~~g~~~~~~~~~   75 (154)
                      ...++.|++.++.|+|   ..+++|||++|.|++++... .+++.|||.+........      ......|+..+.+|+.
T Consensus       103 ~~~~~~~~~~~l~~~H---~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~  179 (384)
T COG0515         103 ALFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEV  179 (384)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHH
Confidence            4567899999999999   55599999999999999888 799999999876544321      2345577888888888


Q ss_pred             ccCC--CCcchHHHHHHHH
Q 044888           76 LRGK--IDPGCFKTFTDIA   92 (154)
Q Consensus        76 ~~~~--~~~~~~~~~~~l~   92 (154)
                      +.+.  .......+++.+.
T Consensus       180 ~~~~~~~~~~~~~D~~s~g  198 (384)
T COG0515         180 LLGLSLAYASSSSDIWSLG  198 (384)
T ss_pred             hcCCCCCCCCchHhHHHHH
Confidence            7653  3344445554333

>PRK10345 hypothetical protein; Provisional

Probab=98.30  E-value=9.2e-07  Score=62.37  Aligned_cols=44  Identities=27%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             HHHHHHHHH-HHhhcCCCCCcEeecCCCCcEEecCC----CcEEEecC-CCcc
Q 044888            6 ICIGAARGL-HYLRTGTRNIIIHRDVKSTNILLDEN----WVAKVSDL-GLAK   52 (154)
Q Consensus         6 i~~~ia~gl-~~LH~~~~~~i~h~dl~~~nill~~~----~~~kl~df-g~~~   52 (154)
                      ++.++..++ .|||   ..+|+||||||.||+++..    ..++|+|+ |...
T Consensus       109 ~~~~~L~~l~~yLh---~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~  158 (210)
T PRK10345        109 QLRQLLKKLKRYLL---DNRIVTMELKPQNILCQRISESEVIPVVCDNIGEST  158 (210)
T ss_pred             HHHHHHHHHHHHHH---HCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcc
Confidence            467777777 8999   5669999999999999743    47999995 5443

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.23  E-value=3e-06  Score=63.03  Aligned_cols=54  Identities=24%  Similarity=0.299  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-----CcEEEecCCCcccCCCCc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-----WVAKVSDLGLAKVGPNML   58 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-----~~~kl~dfg~~~~~~~~~   58 (154)
                      +.+-+|.|+..-++|+|++.   +|+||+||.|.|++..     ..+.+.|||+++...+..
T Consensus       125 TV~miA~Qmi~rie~vH~k~---LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~  183 (449)
T KOG1165|consen  125 TVAMIAKQMITRIEYVHEKD---LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPK  183 (449)
T ss_pred             hHHHHHHHHHHHHHHHHhcc---eeecccCccceeecCCCCCCCceEEEEeccchhhhcCcc
Confidence            45678999999999999554   9999999999999743     347899999999876643

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.21  E-value=2.2e-06  Score=61.17  Aligned_cols=46  Identities=13%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...+++.++..+|   ..+++|+|++|.|++++.++ +++.|||......
T Consensus       140 ~~~~i~~~l~~lH---~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~  185 (232)
T PRK10359        140 VKAKIKASIESLH---QHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTA  185 (232)
T ss_pred             HHHHHHHHHHHHH---HcCCccCCCChHHEEEeCCC-EEEEECCCccccc
Confidence            4568899999999   56699999999999999888 9999999876553

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.20  E-value=2.5e-06  Score=60.96  Aligned_cols=52  Identities=27%  Similarity=0.325  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC---CcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN---WVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~---~~~kl~dfg~~~~~~~   56 (154)
                      +.+-+|-|+..-++|+|.++   ++|||+||.|.|++-+   ..+.+.|||+++...+
T Consensus       112 TvLMLaDQml~RiEyvH~r~---fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d  166 (341)
T KOG1163|consen  112 TVLMLADQMLSRIEYVHLRN---FIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRD  166 (341)
T ss_pred             hHHHHHHHHHHHHHHHHhhc---cccccCCccceeeccccccceEEEEeccchhhhcc
Confidence            44566888999999999655   9999999999999754   3467999999987654

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=5.7e-07  Score=69.77  Aligned_cols=100  Identities=27%  Similarity=0.353  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc------ceeeecccccccccCcccc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML------TLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~------~~~~~~~g~~~~~~~~~~~   77 (154)
                      +.++.|++.|+.|      ++.+|+|++|.||++..+...||.|||+........      .......|+..|+.||.+.
T Consensus       362 ~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~  435 (516)
T KOG1033|consen  362 LDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIR  435 (516)
T ss_pred             HHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHh
Confidence            4567888888888      348999999999999988899999999976655432      1223346788888888887


Q ss_pred             C---------------------------------------CCCcc---hHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           78 G---------------------------------------KIDPG---CFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        78 ~---------------------------------------~~~~~---~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                      +                                       .+|+.   .-..-+.+..+.+...|.+||++.++
T Consensus       436 g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~t~~d~r~g~ip~~~~~d~p~e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  436 GQQYSEKVDIYALGLILAELLIQFSTQFERIATLTDIRDGIIPPEFLQDYPEEYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             hhhhhhhcchhhHHHHHHHHHHHhccHHHHHHhhhhhhcCCCChHHhhcCcHHHHHHHHhcCCCcccCchHHHH
Confidence            5                                       12211   11223478888999999999944443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.11  E-value=2.3e-06  Score=71.47  Aligned_cols=43  Identities=35%  Similarity=0.539  Sum_probs=38.0

Q ss_pred             HHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888           10 AARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus        10 ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      .+.+++|||   ..+|+|||+++.|.++..-+++|+.|||+++...
T Consensus       152 mvla~Eylh---~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GL  194 (1205)
T KOG0606|consen  152 MVLAVEYLH---SYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGL  194 (1205)
T ss_pred             hhHHhHhhc---cCCeecCCCCCCcceeeecccccccchhhhhhhh
Confidence            367899999   5669999999999999999999999999987643

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.08  E-value=3.9e-06  Score=62.42  Aligned_cols=42  Identities=26%  Similarity=0.456  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEec
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSD   47 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~d   47 (154)
                      +|+.||..||.|||+. +++++|+++....+++..++.+|+.-
T Consensus       180 kw~tqIlsal~yLhs~-~PpiihgnlTc~tifiq~ngLIkig~  221 (458)
T KOG1266|consen  180 KWCTQILSALSYLHSC-DPPIIHGNLTCDTIFIQHNGLIKIGS  221 (458)
T ss_pred             HHHHHHHhhhhhhhcc-CCccccCCcchhheeecCCceEEecc
Confidence            6889999999999986 78899999999999999888888753

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.07  E-value=2.8e-06  Score=67.25  Aligned_cols=65  Identities=28%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            7 CIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         7 ~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ...++.+++++|   +.+++|+|+|+.||+++.+|++++.|||+++......    ..+|++.+++++...+
T Consensus       103 ~aelaLald~lh---~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~----~~cgt~eymApEI~~g  167 (612)
T KOG0603|consen  103 LAELALALDHLH---KLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK----IACGTYEYRAPEIING  167 (612)
T ss_pred             HHHHHHHHhhcc---hhHHHHhcccccceeecccCccccCCchhhhHhHhhh----hcccchhhhhhHhhhc
Confidence            355678899999   6679999999999999999999999999998764422    2278999999998874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.92  E-value=8.2e-06  Score=68.72  Aligned_cols=45  Identities=24%  Similarity=0.231  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      |+-|+..||.-.|   ..+|.|+|||++|||+..-.++.++||.-.+.
T Consensus       125 iaFQLL~al~qcH---~~gVcHGDIKsENILiTSWNW~~LtDFAsFKP  169 (1431)
T KOG1240|consen  125 IAFQLLKALSQCH---KLGVCHGDIKSENILITSWNWLYLTDFASFKP  169 (1431)
T ss_pred             HHHHHHHHHHHHH---HcCccccccccceEEEeeechhhhhcccccCC
Confidence            6889999999999   66799999999999999988999999975543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=97.87  E-value=1.2e-05  Score=60.89  Aligned_cols=44  Identities=32%  Similarity=0.477  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcc
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAK   52 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~   52 (154)
                      +......||.++|   ..+|+|||+||.|++.+. .+.-.|.|||++.
T Consensus       137 Yl~~ll~Al~~~h---~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  137 YLRNLLKALAHLH---KNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             HHHHHHHHhhhhh---ccCccccCCCccccccccccCCceEEechhHH
Confidence            4677888999999   677999999999999974 4667899999987

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.87  E-value=3.9e-05  Score=51.63  Aligned_cols=49  Identities=22%  Similarity=0.163  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhhcCC--CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            5 KICIGAARGLHYLRTGT--RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~--~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      .++.+++.+|..||...  ...++|+|+++.|++++ ++.+++.||+.+...
T Consensus        87 ~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~  137 (170)
T cd05151          87 ENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMN  137 (170)
T ss_pred             HHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCC
Confidence            45678999999999643  22369999999999998 567899999987643

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.86  E-value=0.00019  Score=49.66  Aligned_cols=99  Identities=22%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC---cEEEecCCCcccCCCCcceeeecccccccccCccccCCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW---VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKI   80 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (154)
                      ..++..|.+.+.-||   ...++|+||..+|+++..++   .+.+.|||++.....     ....|--.|+....+.-..
T Consensus       116 ~~~~~~iG~~igklH---~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~~-----~EDKgVDLYVlErA~lsTh  187 (229)
T KOG3087|consen  116 AELARRIGELIGKLH---DNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVSRL-----PEDKGVDLYVLERAVLSTH  187 (229)
T ss_pred             HHHHHHHHHHHHHhh---hCCeecccccccceEEecCCCcCceEEEeecchhcccC-----cccccceeeeehHhHhccC
Confidence            456788888899999   67799999999999996543   457999999865321     1223333444444443344


Q ss_pred             Ccch--HHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 044888           81 DPGC--FKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus        81 ~~~~--~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~  117 (154)
                      +...  .+.+.+--..|+..       ...|++.|+++.
T Consensus       188 ~~~~~~fe~~~~~Y~~~~K~-------~~avlkk~eeVR  219 (229)
T KOG3087|consen  188 DKKALLFEGFLEGYRASGKQ-------SKAVLKKLEEVR  219 (229)
T ss_pred             cccHHHHHHHHHHHHhcchh-------hHHHHHHHHHHh
Confidence            4332  24555554566654       667777777654

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=0.00011  Score=61.83  Aligned_cols=47  Identities=26%  Similarity=0.210  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-------CCcEEEecCCCccc
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-------NWVAKVSDLGLAKV   53 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-------~~~~kl~dfg~~~~   53 (154)
                      +.|+.|++.-++.||   ..+|||+||||.|.+|..       +..++|.|||.+--
T Consensus       797 ~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siD  850 (974)
T KOG1166|consen  797 MFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSID  850 (974)
T ss_pred             hHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCcccceEEEeccccee
Confidence            467899999999999   566999999999999942       35689999998743

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.82  E-value=1.5e-05  Score=61.80  Aligned_cols=35  Identities=40%  Similarity=0.593  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN   40 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~   40 (154)
                      -+|+.||..||.|||..  .+|+|.||||.|||+..+
T Consensus       190 K~I~~qvL~GLdYLH~e--cgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  190 KEICRQVLTGLDYLHRE--CGIIHTDLKPENVLLCST  224 (590)
T ss_pred             HHHHHHHHHHHHHHHHh--cCccccCCCcceeeeecc
Confidence            36899999999999984  579999999999999644

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.79  E-value=5.8e-05  Score=52.02  Aligned_cols=47  Identities=23%  Similarity=0.340  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ..++..+..-+.-||   ..+++|+||.++|+.+.... +.+.|||++.+.
T Consensus        95 ~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          95 PDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             hHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            457777878888999   67799999999999998764 899999999754

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.70  E-value=9.6e-05  Score=57.70  Aligned_cols=51  Identities=22%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             HHHHHHHHHH-HHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            3 RLKICIGAAR-GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         3 rl~i~~~ia~-gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      +.+++..++. .+..+|   ..+++|+|++|.|++++.++.+++.|||++..+..
T Consensus       258 ~~~ia~~~~~~~l~ql~---~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       258 RKALAENLARSFLNQVL---RDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            3456666655 467788   56699999999999999999999999999987754

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.68  E-value=9.6e-05  Score=59.59  Aligned_cols=101  Identities=18%  Similarity=0.245  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---------eeeecccccccccCccccC
Q 044888            8 IGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---------LCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         8 ~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~   78 (154)
                      .+++.|+.|+|.  ..+++|+++.|.+|.++.++..|++.|+++........         ..........+.++|.+.+
T Consensus       106 ~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~  183 (700)
T KOG2137|consen  106 GNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLG  183 (700)
T ss_pred             hcccchhhhhcc--CcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcc
Confidence            456689999997  56799999999999999999999999987655433100         0000011112222222111


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                      .+..+.+.++.+=+.+.+..++..||++.++.
T Consensus       184 ~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l~  263 (700)
T KOG2137|consen  184 TTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLLL  263 (700)
T ss_pred             ccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCcchhhhh
Confidence                                                            23346688899999999999999999887763

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.66  E-value=6.7e-05  Score=52.38  Aligned_cols=48  Identities=13%  Similarity=0.103  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHh-hcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            4 LKICIGAARGLHYL-RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         4 l~i~~~ia~gl~~L-H~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      .++..++..+|..+ |   ..+++|+||++.||++.. +.+.+.|||-+-...
T Consensus       127 ~~i~~~i~~~l~~l~H---~~glVHGDLs~~NIL~~~-~~v~iIDF~qav~~~  175 (197)
T cd05146         127 KNAYYQVLSMMKQLYK---ECNLVHADLSEYNMLWHD-GKVWFIDVSQSVEPT  175 (197)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEC-CcEEEEECCCceeCC
Confidence            34567888899988 7   556999999999999974 578999999875443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.56  E-value=0.00015  Score=53.11  Aligned_cols=48  Identities=23%  Similarity=0.186  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-------CCcEEEecCCCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-------NWVAKVSDLGLAKV   53 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-------~~~~kl~dfg~~~~   53 (154)
                      +..++.+++..+.-||   ..+++|+|+++.||+++.       +..+.+.||+.+..
T Consensus       140 ~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        140 KRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            3467888999999999   666999999999999975       46789999998754

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.50  E-value=0.00017  Score=50.66  Aligned_cols=49  Identities=27%  Similarity=0.257  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC---cEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW---VAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~---~~kl~dfg~~~~~   54 (154)
                      +-.++.+++..+.-||   ..+++|+|+++.|||++.+.   .+.+.||+.++..
T Consensus       120 ~~~ll~~l~~~i~~lH---~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  120 RRELLRALARLIAKLH---DAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHHHHHHHHHHHHHH---HCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            5577889999999999   66699999999999998776   7889999877654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.12  E-value=0.0002  Score=58.02  Aligned_cols=104  Identities=27%  Similarity=0.298  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCC-Ccc--eeeeccc-ccccccCccccCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPN-MLT--LCCYQSG-TLGLVVDPFLRGK   79 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~-~~~--~~~~~~g-~~~~~~~~~~~~~   79 (154)
                      .+..|+..|+.|+|.  ..++.|+|++|.|.+++..+ ..+++|||++..... ...  ......| ++.++++|...+.
T Consensus       127 ~~~~ql~s~l~~~H~--~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~  204 (601)
T KOG0590|consen  127 RYLPQLNSGLSYLHP--ENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGK  204 (601)
T ss_pred             hhhhhhccCccccCc--ccccccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccch
Confidence            356788899999994  34499999999999999998 899999999877655 211  2223345 6666666655330


Q ss_pred             -------------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           80 -------------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        80 -------------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                       ..........++..+++..+|..|.+.+++.
T Consensus       205 ~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~  284 (601)
T KOG0590|consen  205 AYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELK  284 (601)
T ss_pred             hhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhcccccccCCchhcccccccc
Confidence                                                             0011233455677778888889998888875

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.95  E-value=0.0022  Score=44.55  Aligned_cols=46  Identities=24%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHH-hhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            5 KICIGAARGLHY-LRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         5 ~i~~~ia~gl~~-LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      .++.++...+.. +|   ..+++|+||...||+++.+ .+.+.|||.+...
T Consensus       110 ~~~~~il~~~~~~~~---~~givHGDLs~~NIlv~~~-~~~iIDf~qav~~  156 (188)
T PF01163_consen  110 ELLEEILEEIIKMLH---KAGIVHGDLSEYNILVDDG-KVYIIDFGQAVDS  156 (188)
T ss_dssp             HHHHHHHHHHHHHHH---CTTEEESS-STTSEEEETT-CEEE--GTTEEET
T ss_pred             HHHHHHHHHHHHHHH---hcCceecCCChhhEEeecc-eEEEEecCcceec
Confidence            455666665555 46   5679999999999999887 9999999877544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK09902 hypothetical protein; Provisional

Probab=96.91  E-value=0.0016  Score=45.95  Aligned_cols=47  Identities=15%  Similarity=0.054  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc--EEEecCCCcc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV--AKVSDLGLAK   52 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~--~kl~dfg~~~   52 (154)
                      |-.+..+++..+.-||   ..++.|+|+.+.||+++..+.  +++.||--++
T Consensus       130 k~~il~~va~~ia~LH---~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        130 RQAMLKAVALAFKKMH---SVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             HHHHHHHHHHHHHHHH---HCCCcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            4578899999999999   666999999999999985555  8888885544

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.74  E-value=0.0016  Score=51.66  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             HHHHHHH----HHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCCCccee-----eecccccccccCcc
Q 044888            6 ICIGAAR----GLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPNMLTLC-----CYQSGTLGLVVDPF   75 (154)
Q Consensus         6 i~~~ia~----gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~~~~~~-----~~~~g~~~~~~~~~   75 (154)
                      ...+..+    ||.++|   ...++|.++++.|+++..+ ..+++.|||+...+....-..     .-..|...|++++.
T Consensus       223 ~~~~~~~~~~~al~~~h---s~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~  299 (524)
T KOG0601|consen  223 SLRDWLSRDVTALSHLH---SNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKEL  299 (524)
T ss_pred             HHhhhhhcccccccccC---CCcccccccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhh
Confidence            4455556    899999   4559999999999999998 788999999877665431100     11133444444443


Q ss_pred             ccC-------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           76 LRG-------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        76 ~~~-------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      ..+                                           ++-..-..++.......++.++..|++.+.+..
T Consensus       300 ~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  300 LNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             hccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence            332                                           011122445556888899999999998887753

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=96.51  E-value=0.0036  Score=51.57  Aligned_cols=28  Identities=7%  Similarity=-0.015  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           85 FKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        85 ~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      ...+.+++..||..+|.+||++.+++..
T Consensus       607 ~~~~~~~l~~lL~~dP~~R~ta~e~l~h  634 (669)
T cd05610         607 SVNAQNAIEILLTMDPTKRAGLKELKQH  634 (669)
T ss_pred             CHHHHHHHHHHcccChhHCcCHHHHHhC
Confidence            4557789999999999999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=96.47  E-value=0.0068  Score=42.06  Aligned_cols=52  Identities=25%  Similarity=0.194  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      +|.+||.++...+.++++.....+.-.|+++.|+.++.++.+|+.|......
T Consensus        60 ~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   60 QRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFV  111 (188)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcch
Confidence            6899999999999999986555577799999999999999999999876543

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.36  E-value=0.006  Score=48.46  Aligned_cols=49  Identities=27%  Similarity=0.490  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKV   53 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~   53 (154)
                      .++++..|++.++-++|   .+.++|+|+++.||++..+ +..++.|||....
T Consensus       367 ~~~~~~~q~~~~l~~i~---s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  367 PRLRLTAQILTALNVIH---SKLFVHLDVKPSNILISNDGFFSKLGDFGCWTR  416 (524)
T ss_pred             hhhhhHHHHHhcccccc---chhhhcccccccceeeccchhhhhccccccccc
Confidence            36777899999999999   5669999999999999875 7888999988753

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.98  E-value=0.01  Score=46.67  Aligned_cols=33  Identities=18%  Similarity=0.158  Sum_probs=29.2

Q ss_pred             CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .++.+...++.++..-+++.+|++|||+.+.+.
T Consensus       517 ~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~  549 (590)
T KOG1290|consen  517 EWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLK  549 (590)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCccccccHHHHhc
Confidence            456677889999999999999999999999874

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=95.98  E-value=0.023  Score=39.53  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             CCCcEeecCCCCcEEecC--CCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDE--NWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~--~~~~kl~dfg~~~~~   54 (154)
                      ...++|+|+.+.|++++.  +..+.+.||+.+...
T Consensus       173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g  207 (223)
T cd05154         173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLG  207 (223)
T ss_pred             CcEEEECCCCcccEEEcCCCCcEEEEEeccccccC
Confidence            356899999999999988  566789999887654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=95.92  E-value=0.0094  Score=47.85  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=31.1

Q ss_pred             CCCcEeecCCCCcEEecCCC----cEEEecCCCcccCCC
Q 044888           22 RNIIIHRDVKSTNILLDENW----VAKVSDLGLAKVGPN   56 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~----~~kl~dfg~~~~~~~   56 (154)
                      ..+++|+|++|.||+++.++    .+++.|||+...+..
T Consensus       278 ~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        278 RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            45699999999999999887    899999999987755

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=95.74  E-value=0.024  Score=40.43  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            6 ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         6 i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ++-.+..++.-+|   ..|+.|+|..|.|+++..+ .+++.||+..+.
T Consensus       140 ~~~ki~~~ikqlH---~~G~~HGD~hpgNFlv~~~-~i~iID~~~k~~  183 (229)
T PF06176_consen  140 LAEKIVEAIKQLH---KHGFYHGDPHPGNFLVSNN-GIRIIDTQGKRM  183 (229)
T ss_pred             HHHHHHHHHHHHH---HcCCccCCCCcCcEEEECC-cEEEEECccccc
Confidence            3456778899999   6679999999999998855 488999977654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.65  E-value=0.032  Score=45.44  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcc
Q 044888            7 CIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK   52 (154)
Q Consensus         7 ~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~   52 (154)
                      +.||+.||.|||.  +..++|+|+....++++..+..||++|-+..
T Consensus       110 l~qIl~AL~FL~~--d~~lvHgNv~~~SVfVn~~GeWkLggle~v~  153 (690)
T KOG1243|consen  110 LFQILAALSFLND--DCNLVHGNVCKDSVFVNESGEWKLGGLELVS  153 (690)
T ss_pred             HHHHHHHHHHHhc--cCCeeeccEeeeeEEEcCCCcEEEeeeEEEe
Confidence            5789999999997  4469999999999999999999999986553

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=93.90  E-value=0.12  Score=38.20  Aligned_cols=29  Identities=34%  Similarity=0.342  Sum_probs=25.9

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGL   50 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~   50 (154)
                      ..+++|+|+..-||+++.++.+.+.||--
T Consensus       220 ~~GiVHGDlSefNIlV~~dg~~~vIDwPQ  248 (304)
T COG0478         220 RRGIVHGDLSEFNILVTEDGDIVVIDWPQ  248 (304)
T ss_pred             HcCccccCCchheEEEecCCCEEEEeCcc
Confidence            35699999999999999999999999843

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=93.79  E-value=0.42  Score=38.47  Aligned_cols=52  Identities=12%  Similarity=0.105  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM   57 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~   57 (154)
                      -+.++.|+..||.++|+   .|+.-+-|.+.+|+++++..++++..|....+..+
T Consensus       395 lW~y~~QLtaaL~sIHs---sGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d  446 (655)
T KOG3741|consen  395 LWSYISQLTAALYSIHS---SGLACKTLDLKKILVTGKMRIRISGCGIMDVLQED  446 (655)
T ss_pred             HHHHHHHHHHHHHHHHh---cCceeecccHhHeEeeCcceEEEecccceeeecCC
Confidence            35788999999999994   55888999999999999989999988877666554

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=93.04  E-value=0.12  Score=36.82  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=27.4

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++|+|+.+.|++++......+.||+.+...
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~g  195 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVG  195 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccCcC
Confidence            445899999999999987766789999987554

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=92.96  E-value=0.28  Score=36.43  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=28.3

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +.+++|+|+.+.|++++.+....+.||+.+...
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~~  218 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGDSVKGVIDFYFACTD  218 (307)
T ss_pred             CCccCCCCCCcCcEEEECCceEEEeecccccCc
Confidence            567999999999999998876789999887543

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK05231 homoserine kinase; Provisional

Probab=92.77  E-value=0.11  Score=38.75  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +.+++|+|+.+.|++++.+....+.||+.+...
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~~  218 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFACND  218 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEecccccCC
Confidence            567999999999999997766689999887554

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=92.73  E-value=0.41  Score=35.32  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=30.0

Q ss_pred             CCCCcEeecCCCCcEEecCC----CcEEEecCCCcccCCC
Q 044888           21 TRNIIIHRDVKSTNILLDEN----WVAKVSDLGLAKVGPN   56 (154)
Q Consensus        21 ~~~~i~h~dl~~~nill~~~----~~~kl~dfg~~~~~~~   56 (154)
                      ....+.|+|+.+.||+++.+    +.+.+.||..+.....
T Consensus       177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p  216 (302)
T cd05156         177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYR  216 (302)
T ss_pred             CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCc
Confidence            35679999999999999874    7899999988876544

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=92.53  E-value=1.2  Score=33.06  Aligned_cols=71  Identities=8%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCCCcchHHHHHHHHHHhhccCCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGC  101 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~  101 (154)
                      ..+++|+|+...|++++.++.+.+.||-.+..-                            ....++..++.+++..   
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~d----------------------------~~~~DLa~~~~~~~~~---  243 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKASFA----------------------------SPLTDLAAFFRRSFGT---  243 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhcccC----------------------------CcHHHHHHHHHHHHhh---
Confidence            457999999999999998888888898665321                            1145555666676654   


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCC
Q 044888          102 DRPQMGDVLCNLGLAWRQQGAV  123 (154)
Q Consensus       102 ~RP~~~~v~~~L~~~~~~~~~~  123 (154)
                      ..+.+.+....|+.-.+.....
T Consensus       244 ~~~~~~~~~~~l~~Y~~~~pL~  265 (309)
T TIGR02904       244 YPQPIDEMFEWFYTYEKTLPLT  265 (309)
T ss_pred             CCCChHHHHHHHHHHHhcCCCC
Confidence            3366666666666655554433

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=92.24  E-value=3  Score=33.14  Aligned_cols=41  Identities=17%  Similarity=0.248  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEec
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSD   47 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~d   47 (154)
                      ++.+..+|.+..-||   ..+-.-+|++++|+++++++.+.+.|
T Consensus       120 lrvaRnlA~aFA~lH---~~Gh~vGDVn~~~~lVsd~~~V~LVd  160 (637)
T COG4248         120 LRVARNLASAFATLH---EHGHVVGDVNQNSFLVSDDSKVVLVD  160 (637)
T ss_pred             HHHHHHHHHHHHHHH---hcCCcccccCccceeeecCceEEEEc
Confidence            567888899999999   45577899999999998888777655

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=92.05  E-value=0.15  Score=36.36  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=28.6

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++|+|+.+.|++++.+....|.||+.+....
T Consensus       162 ~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~gd  195 (244)
T cd05150         162 DLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVAD  195 (244)
T ss_pred             ceEEECCCCCCccEEEeCCcEEEEEEcccccccc
Confidence            4569999999999999987778899998876543

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=90.54  E-value=0.18  Score=35.21  Aligned_cols=32  Identities=28%  Similarity=0.358  Sum_probs=22.0

Q ss_pred             CCCcEeecCCCCcEEec-CCCcEEEecCCCccc
Q 044888           22 RNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKV   53 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~   53 (154)
                      ...++|+|+.+.|++++ .++.+.+.||+.+..
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccceE
Confidence            56799999999999999 555668999987754

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=90.51  E-value=0.28  Score=34.70  Aligned_cols=33  Identities=27%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             CCCcEeecCCCCcEEecC-CCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~   54 (154)
                      ...++|+|+.+.||+++. +..+.+.||-.+...
T Consensus       169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~  202 (235)
T cd05157         169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYN  202 (235)
T ss_pred             CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcC
Confidence            456999999999999997 577999999776543

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=90.51  E-value=0.31  Score=34.74  Aligned_cols=32  Identities=22%  Similarity=0.234  Sum_probs=26.8

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++|+|+.+.|++++.++ ..+.||+.+..-
T Consensus       152 ~~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~~G  183 (226)
T TIGR02172       152 TSTCLHGDFQIGNLITSGKG-TYWIDLGDFGYG  183 (226)
T ss_pred             CCceEecCCCCCcEEEcCCC-cEEEechhcCcC
Confidence            34578999999999999877 999999887543

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=90.42  E-value=0.25  Score=36.34  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=27.9

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +..++|+|+.+.|++++.+....+.||..+...
T Consensus       174 ~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~g  206 (296)
T cd05153         174 PRGVIHADLFRDNVLFDGDELSGVIDFYFACTD  206 (296)
T ss_pred             CCcCCccCcCcccEEEeCCceEEEeehhhhcCc
Confidence            456999999999999998877789999877543

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=90.33  E-value=0.81  Score=33.79  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=26.3

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ..+++|+|+.+.|++++. +.+.+.||+.+...
T Consensus       186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~~~~  217 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYCTID  217 (313)
T ss_pred             cCceEcCCCCcccEEEeC-CcEEEEECcccccC
Confidence            467899999999999987 56789999876543

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=90.32  E-value=0.93  Score=35.22  Aligned_cols=50  Identities=22%  Similarity=0.265  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      -+.|+.+.+.-+.-+ +. .-++-|||+.-.||+++ .|.+.+.||.+++...
T Consensus       323 ~lsff~s~~sil~~l-ek-kf~fehrnlt~~niLId-~GnvtLIDfklsRl~~  372 (488)
T COG5072         323 ELSFFWSCISILDIL-EK-KFPFEHRNLTLDNILID-EGNVTLIDFKLSRLSY  372 (488)
T ss_pred             HHHHHHHHHHHHhhh-hh-cCCcccccccccceeee-cCceEEEEeeeeeccc
Confidence            345555554433333 32 45689999999999999 8999999999988543

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=89.86  E-value=0.44  Score=35.93  Aligned_cols=35  Identities=26%  Similarity=0.463  Sum_probs=30.6

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...++|+|+.+.|++++....+-|.||+++..-.+
T Consensus       197 ~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP  231 (321)
T COG3173         197 PPVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDP  231 (321)
T ss_pred             CceeeeCCcccCCEEEeCCCeeEEEeccccccCCc
Confidence            46799999999999999888899999999876554

>TIGR02721 ycfN_thiK thiamine kinase

Probab=89.70  E-value=0.35  Score=34.85  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             CCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888           23 NIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus        23 ~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ..++|+|+.+.|+++++++ +.+.||..+....+
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gdp  178 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYASDGDI  178 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccCcCCH
Confidence            4689999999999998876 68999988766543

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=89.47  E-value=0.74  Score=33.36  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             HHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCC
Q 044888           12 RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGL   50 (154)
Q Consensus        12 ~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~   50 (154)
                      ..|.-.|+. ....+|+|..|.||+-|+.|.+|+-|-+.
T Consensus       152 ~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  152 KDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             HHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhh
Confidence            457778865 57799999999999999999999998654

The function of this family is unknown.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=89.12  E-value=1.2  Score=33.90  Aligned_cols=29  Identities=31%  Similarity=0.437  Sum_probs=25.4

Q ss_pred             cEeecCCCCcEEecCCCc-EEEecCCCccc
Q 044888           25 IIHRDVKSTNILLDENWV-AKVSDLGLAKV   53 (154)
Q Consensus        25 i~h~dl~~~nill~~~~~-~kl~dfg~~~~   53 (154)
                      ++|+|+.+.||+++.+.. +.+.||+-+..
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEcccccc
Confidence            899999999999998874 88999987654

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=88.13  E-value=1.2  Score=32.56  Aligned_cols=47  Identities=17%  Similarity=0.148  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            7 CIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         7 ~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ..++..++.-|..  .-+++|+||..=|||++ ++.+.+.|+|-+.....
T Consensus       172 ~~~~v~~~~~l~~--~a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~h  218 (268)
T COG1718         172 YEDVVEYMRRLYK--EAGLVHGDLSEYNILVH-DGEPYIIDVSQAVTIDH  218 (268)
T ss_pred             HHHHHHHHHHHHH--hcCcccccchhhheEEE-CCeEEEEECccccccCC
Confidence            4455566666653  25699999999999999 78999999988765543

>PRK10271 thiK thiamine kinase; Provisional

Probab=88.12  E-value=0.6  Score=32.47  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=27.4

Q ss_pred             CCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888           23 NIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus        23 ~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ....|+|+.+.|+++..++ .++.||+.+....+
T Consensus        77 ~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp  109 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDI  109 (188)
T ss_pred             eeeecCCCCCccEEEECCC-EEEEeCCcccCCCH
Confidence            3579999999999998776 88999998866543

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=87.79  E-value=0.55  Score=34.58  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=27.0

Q ss_pred             CCCcEeecCCCCcEEecCCCc-EEEecCCCcccCC
Q 044888           22 RNIIIHRDVKSTNILLDENWV-AKVSDLGLAKVGP   55 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~-~kl~dfg~~~~~~   55 (154)
                      ...++|+|+.+.|++++.++. ..|.||+.+....
T Consensus       184 ~~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iGD  218 (276)
T cd05152         184 HTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGD  218 (276)
T ss_pred             CCeeEeCCCCCCcEEEeCCCCEEEEECcHhcccCC
Confidence            345999999999999987444 5799999876544

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=86.35  E-value=0.5  Score=33.02  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=22.8

Q ss_pred             CCCcEeecCCCCcEEe-cCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILL-DENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill-~~~~~~kl~dfg~~~~~   54 (154)
                      +..+.|+|+.+.||++ ..++.+++.||-.+...
T Consensus       142 ~~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~n  175 (211)
T PF01633_consen  142 PLVFCHNDLNPGNILINNKDGEVKLIDFEYAGYN  175 (211)
T ss_dssp             GEEEE-S--SGGGEEETSSSSCEEE--GTT-EEE
T ss_pred             CceEeeccCccccEEeccCCCeEEEecHHHHhhc
Confidence            3568999999999999 78899999999887654

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=85.56  E-value=1  Score=31.26  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=25.9

Q ss_pred             CCCcEeecCCCCcEEecCCC-----cEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENW-----VAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~-----~~kl~dfg~~~~~   54 (154)
                      ...+.|+|+.+.|+++..+.     .+.+.||..+...
T Consensus       119 ~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g  156 (196)
T smart00587      119 FNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYG  156 (196)
T ss_pred             ceEEeeCCCCccceeeccCCCCCccceEEEecccCCcC
Confidence            34689999999999997543     5788899877543

subfamily of choline kinases

>PLN02236 choline kinase

Probab=84.45  E-value=1  Score=34.19  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=28.6

Q ss_pred             CCCcEeecCCCCcEEecC-CCcEEEecCCCcccCCC
Q 044888           22 RNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVGPN   56 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~~~   56 (154)
                      ...+.|+|+.+.|++++. +..+.+.||..+.....
T Consensus       199 ~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~~~  234 (344)
T PLN02236        199 EIGFCHNDLQYGNIMIDEETRAITIIDYEYASYNPV  234 (344)
T ss_pred             CceEEeCCCCcCcEEEeCCCCcEEEEeehhccccch
Confidence            456899999999999976 46799999988866543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=83.20  E-value=1.6  Score=38.04  Aligned_cols=42  Identities=21%  Similarity=0.351  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcc
Q 044888            8 IGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK   52 (154)
Q Consensus         8 ~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~   52 (154)
                      ..+.+.++|||+..   +.|+++++.+.+...++..++++|+...
T Consensus       911 ~~~vqs~e~L~s~~---r~h~~~~p~~~l~~~~gh~~l~~~~t~~  952 (1205)
T KOG0606|consen  911 LERVQSLESLHSSL---RKHRDLKPDSLLIAYDGHRPLTDFGTLS  952 (1205)
T ss_pred             HHHHhhhhccccch---hhcccccccchhhcccCCcccCcccccc
Confidence            34567799999544   8999999999999999999999998443

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=82.12  E-value=1.4  Score=35.62  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=31.8

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM   57 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~   57 (154)
                      ..+++|.|.-|-|+++..++...+.|||+.......
T Consensus       283 ~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~  318 (517)
T COG0661         283 RDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDPK  318 (517)
T ss_pred             hcCccccCCCccceEEecCCcEEEEcCcceecCCHH
Confidence            345999999999999999999999999998877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		8e-16
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		8e-16
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-08
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-10
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		3e-10
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		4e-10
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		5e-10
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		4e-09
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		4e-09
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		5e-06
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-05
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		4e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		5e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		7e-05
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-04
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		1e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		1e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		1e-04
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		1e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		2e-04
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		2e-04
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		2e-04
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		3e-04
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		3e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		3e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		4e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-04
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-04
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		5e-04
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		5e-04
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		5e-04
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		5e-04
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		5e-04
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		6e-04
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		7e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		7e-04
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		7e-04
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		7e-04
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		7e-04
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		7e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		7e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		8e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		9e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		9e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 8/82 (9%)
Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
           RL+ICIGAARGLHYL T     IIHRDVKS NILLDEN+V K++D G++K G  +    L
Sbjct: 141 RLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHL 197
Query: 61  CCYQSGTLGLVVDP--FLRGKI 80
                GTLG  +DP  F++G++
Sbjct: 198 XXVVKGTLG-YIDPEYFIKGRL 218

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 8/82 (9%)
Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
           RL+ICIGAARGLHYL T     IIHRDVKS NILLDEN+V K++D G++K G  +    L
Sbjct: 141 RLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHL 197
Query: 61  CCYQSGTLGLVVDP--FLRGKI 80
                GTLG  +DP  F++G++
Sbjct: 198 XXVVKGTLG-YIDPEYFIKGRL 218

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 29  DVKSTNILLDENWVAK---VSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKIDPGCF 85
           DV S  ++L E   A+   V  L    V      +  + +G L  +VDP L  KI P   
Sbjct: 223 DVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESL 282
Query: 86  KTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAV 123
           + F D A KCLA    DRP MGDVL  L  A R Q +V
Sbjct: 283 RKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQESV 320

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
            R KI  GAA G+++L     N  IHRD+KS NILLDE + AK+SD GLA+         
Sbjct: 134 MRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV 190
Query: 62  CYQS--GTLGLVVDPFLRGKIDP 82
                 GT   +    LRG+I P
Sbjct: 191 MXSRIVGTTAYMAPEALRGEITP 213

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
            R KI  GAA G+++L     N  IHRD+KS NILLDE + AK+SD GLA+         
Sbjct: 134 MRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV 190
Query: 62  CYQS--GTLGLVVDPFLRGKIDP 82
                 GT   +    LRG+I P
Sbjct: 191 MXXRIVGTTAYMAPEALRGEITP 213

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
            R KI  GAA G+++L     N  IHRD+KS NILLDE + AK+SD GLA+         
Sbjct: 128 MRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXV 184
Query: 62  CYQS--GTLGLVVDPFLRGKIDP 82
                 GT   +    LRG+I P
Sbjct: 185 MXXRIVGTTAYMAPEALRGEITP 207

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC 62
           R KI  GAA G+++L     N  IHRD+KS NILLDE + AK+SD GLA+          
Sbjct: 126 RCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVX 182
Query: 63  YQS--GTLGLVVDPFLRGKIDP 82
                GT        LRG+I P
Sbjct: 183 XSRIVGTTAYXAPEALRGEITP 204

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 35/51 (68%)
Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           R +I +G+ARGL YL       IIHRDVK+ NILLDE + A V D GLAK+
Sbjct: 141 RQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL 191

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 35/51 (68%)
Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           R +I +G+ARGL YL       IIHRDVK+ NILLDE + A V D GLAK+
Sbjct: 133 RQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL 183

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 3   RLKICIGAARGLHYLRTGTRNI-IIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
           RL +    A+G++YL    RN  I+HRD+KS N+L+D+ +  KV D GL+++  +     
Sbjct: 139 RLSMAYDVAKGMNYLHN--RNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXS 196
Query: 62  CYQSGTLGLVVDPFLRGK 79
              +GT   +    LR +
Sbjct: 197 KXAAGTPEWMAPEVLRDE 214

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L      ARG+ YL   ++   IHRD+ + NIL+ EN+VAK++D GL++
Sbjct: 145 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 190

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L      ARG+ YL   ++   IHRD+ + NIL+ EN+VAK++D GL++
Sbjct: 135 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 180

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 3   RLKICIGAARGLHYLRTGTRNI-IIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
           RL +    A+G++YL    RN  I+HR++KS N+L+D+ +  KV D GL+++  +     
Sbjct: 139 RLSMAYDVAKGMNYLHN--RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSS 196
Query: 62  CYQSGTLGLVVDPFLRGK 79
              +GT   +    LR +
Sbjct: 197 KSAAGTPEWMAPEVLRDE 214

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +GL YL    ++ I+HRD+K  N+LLDEN V K++D GLAK
Sbjct: 123 QGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAK 160

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    ARG+ YL   +   IIHRD+KS NI L E+   K+ D GLA V
Sbjct: 111 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATV 157

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L      ARG+ YL   ++   IHR++ + NIL+ EN+VAK++D GL++
Sbjct: 142 LHFAADVARGMDYL---SQKQFIHRNLAARNILVGENYVAKIADFGLSR 187

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA V
Sbjct: 134 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 180

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA V
Sbjct: 135 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 181

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA V
Sbjct: 112 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 158

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA V
Sbjct: 112 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 158

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA V
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 153

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA V
Sbjct: 109 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 155

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA V
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV 153

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           + I    ARG+ YL   +   IIHRD+KS NI L E+   K+ D GLA
Sbjct: 123 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLA 167

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           + I    ARG+ YL   +   IIHRD+KS NI L E+   K+ D GLA
Sbjct: 123 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLA 167

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC 62
            L YL +     II+RD+K  NILLD+N   K++D G AK  P++    C
Sbjct: 118 ALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLC 164

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA
Sbjct: 135 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA 179

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           K+ +   + L+YL+   ++ +IHRDVK +NILLDE    K+ D G++
Sbjct: 128 KMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGQIKLCDFGIS 172

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA 151

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           + I    A+G+ YL   +   IIHRD+KS NI L E+   K+ D GLA
Sbjct: 127 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA 171

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + I    A+G+ YL       IIHRD+KS NI L E    K+ D GLA V
Sbjct: 135 IDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATV 181

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 8   IGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +  ARG+ YL        +HRD+ + N +LDE++  KV+D GLA+
Sbjct: 131 LQVARGMEYL---AEQKFVHRDLAARNCMLDESFTVKVADFGLAR 172

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           A G+ Y+    R   +HRD+++ NIL+ EN V KV+D GLA++
Sbjct: 373 ASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARL 412

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           K+ I   RGL YLR   ++ I+HRDVK +NIL++     K+ D G++
Sbjct: 118 KVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVS 162

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 10  AARGLHYLRTGTRNI----IIHRDVKSTNILLDENWVAKVSDLGLAKVGP--NMLTLCCY 63
           A R  H L  G   +    I HRD+K  N+LLDE    K+SD GLA V    N   L   
Sbjct: 106 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 64  QSGTLGLVVDPFLRGK 79
             GTL  V    L+ +
Sbjct: 166 MXGTLPYVAPELLKRR 181

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 10  AARGLHYLRTGTRNI----IIHRDVKSTNILLDENWVAKVSDLGLAKVGP--NMLTLCCY 63
           A R  H L  G   +    I HRD+K  N+LLDE    K+SD GLA V    N   L   
Sbjct: 106 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 64  QSGTLGLVVDPFLRGK 79
             GTL  V    L+ +
Sbjct: 166 MXGTLPYVAPELLKRR 181

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 10  AARGLHYLRTGTRNI----IIHRDVKSTNILLDENWVAKVSDLGLAKVGP--NMLTLCCY 63
           A R  H L  G   +    I HRD+K  N+LLDE    K+SD GLA V    N   L   
Sbjct: 106 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 64  QSGTLGLVVDPFLRGK 79
             GTL  V    L+ +
Sbjct: 166 MXGTLPYVAPELLKRR 181

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 10  AARGLHYLRTGTRNI----IIHRDVKSTNILLDENWVAKVSDLGLAKVGP--NMLTLCCY 63
           A R  H L  G   +    I HRD+K  N+LLDE    K+SD GLA V    N   L   
Sbjct: 107 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166
Query: 64  QSGTLGLVVDPFLRGK 79
             GTL  V    L+ +
Sbjct: 167 MXGTLPYVAPELLKRR 182

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y+ +     +IHRD+K +N+L++EN   K+ D G+A+
Sbjct: 170 RGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMAR 207

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 10  AARGLHYLRTGTRNI----IIHRDVKSTNILLDENWVAKVSDLGLAKVGP--NMLTLCCY 63
           A R  H L  G   +    I HRD+K  N+LLDE    K+SD GLA V    N   L   
Sbjct: 106 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 64  QSGTLGLVVDPFLRGK 79
             GTL  V    L+ +
Sbjct: 166 MXGTLPYVAPELLKRR 181

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 6   ICIGAARGLHYL-------RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           I    ARGL YL       + G +  I HRD+KS N+LL  N  A ++D GLA
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA 178

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L +C+    G+ YL   +   +IHRD+ + N L+ EN V KVSD G+ +
Sbjct: 106 LGMCLDVCEGMAYLEEAS---VIHRDLAARNCLVGENQVIKVSDFGMTR 151

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y+ +     +IHRD+K +N+L++EN   K+ D G+A+
Sbjct: 169 RGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMAR 206

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 23  NIIIHRDVKSTNILLDENWVAKVSDLGLA---KVGPNMLTLCCYQSGTLGLVVDPFLRGK 79
           N I+HRD+K  NILLD+N   ++SD G +   + G  +  LC    GT G +    L+  
Sbjct: 219 NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELC----GTPGYLAPEILKCS 274
Query: 80  ID 81
           +D
Sbjct: 275 MD 276

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           GL+Y+    RN I+HRD+K+ N+L+  + V K++D GLA+ 
Sbjct: 137 GLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARA 174

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           LK  +     + YL     N  +HRD+ + N+L+ E+ VAKVSD GL K
Sbjct: 292 LKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK 337

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           LK  +     + YL     N  +HRD+ + N+L+ E+ VAKVSD GL K
Sbjct: 120 LKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK 165

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           LK  +     + YL     N  +HRD+ + N+L+ E+ VAKVSD GL K
Sbjct: 111 LKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK 156

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           GL+Y+    RN I+HRD+K+ N+L+  + V K++D GLA+
Sbjct: 137 GLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLAR 173

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           GL+Y+    RN I+HRD+K+ N+L+  + V K++D GLA+
Sbjct: 136 GLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLAR 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-31
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-14
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-24
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	6e-24
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	9e-04
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-19
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-18
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-17
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-17
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-17
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	6e-17
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-16
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-16
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-16
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	7e-16
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-15
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-15
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-15
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-14
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-13
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-09
3fme_A	290	Dual specificity mitogen-activated protein kinase;	5e-09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	5e-09
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	5e-09
2dyl_A	318	Dual specificity mitogen-activated protein kinase	5e-09
3an0_A	340	Dual specificity mitogen-activated protein kinase;	5e-09
3aln_A	327	Dual specificity mitogen-activated protein kinase;	6e-09
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-09
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	7e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	7e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	7e-09
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	8e-09
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-08
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-08
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-08
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-08
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-08
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-08
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-08
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-08
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	4e-08
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	4e-08
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-08
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	4e-08
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-08
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-08
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	5e-08
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	5e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-08
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	5e-08
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	6e-08
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	6e-08
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	7e-08
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	7e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	7e-08
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	7e-08
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	7e-08
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	7e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-08
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	9e-08
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	9e-08
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-07
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-07
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-07
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-07
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-07
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-07
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-07
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-07
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-07
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-07
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-07
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-07
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-07
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-07
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-07
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-07
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-07
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-07
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-07
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-07
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-07
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-07
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-07
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-07
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-07
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-07
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	3e-07
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-07
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	3e-07
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-07
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-07
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-07
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-07
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	3e-07
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	3e-07
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	4e-07
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-07
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-07
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-07
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	5e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-07
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	6e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	7e-07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	7e-07
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	8e-07
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	8e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-07
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-06
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-06
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-06
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	1e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-06
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	1e-06
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-06
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-06
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-06
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-06
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-06
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-06
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-06
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-06
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	3e-06
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-06
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	3e-06
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-06
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	4e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-06
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	4e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	5e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	5e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	5e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	6e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-06
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	7e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	8e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	8e-06
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	8e-06
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	9e-06
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-05
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-05
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	4e-05
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-05
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	4e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	6e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	7e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	7e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	8e-05
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	8e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-04
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-04
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-04
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-04
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-04
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	4e-04
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	4e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	5e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	5e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	5e-04
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	5e-04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	6e-04
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	6e-04
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	6e-04
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	7e-04
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	8e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	8e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  113 bits (285), Expect = 2e-31
 Identities = 37/58 (63%), Positives = 44/58 (75%), Gaps = 5/58 (8%)

Query: 2   W--RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM 57
           W  RL+ICIGAARGLHYL T     IIHRDVKS NILLDEN+V K++D G++K G  +
Sbjct: 138 WEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTEL 192

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 25/52 (48%), Positives = 29/52 (55%)

Query: 62  CYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
            + +G L  +VDP L  KI P   + F D A KCLA    DRP MGDVL  L
Sbjct: 259 SHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 94.9 bits (237), Expect = 2e-24
 Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 2   W--RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP 55
           W  R KI  GAA G+++L        IHRD+KS NILLDE + AK+SD GLA+   
Sbjct: 132 WHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGLARASE 184

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 93.8 bits (234), Expect = 6e-24
 Identities = 31/60 (51%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 2   W--RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT 59
           W  R +I +G+ARGL YL       IIHRDVK+ NILLDE + A V D GLAK+     T
Sbjct: 130 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDT 189

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 63  YQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
            +   L  +VD  L+G       +    +A  C      +RP+M +V+
Sbjct: 256 LKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVV 303

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 81.3 bits (201), Expect = 3e-19
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 3   RLKICIGAARGLHYL-------RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP 55
              I    ARGL YL       + G +  I HRD+KS N+LL  N  A ++D GLA    
Sbjct: 123 LCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFE 182

Query: 56  NMLTLCC--YQSGTLG 69
              +      Q GT  
Sbjct: 183 AGKSAGDTHGQVGTRR 198

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPNMLT 59
            +  C+  ++G+ YL +     +IHRD+K  N+LL     V K+ D G A      +T
Sbjct: 104 AMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMT 161

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 3   RLKICIGAARGLHYLRT-----GTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV---G 54
            L+I +  A GL +L         +  I HRD+KS NIL+ +N    ++DLGLA +    
Sbjct: 107 CLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQS 166

Query: 55  PNMLTLCCY-QSGT 67
            N L +    + GT
Sbjct: 167 TNQLDVGNNPRVGT 180

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 76.7 bits (189), Expect = 1e-17
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 3   RLKICIGAARGLHYL-----RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            LK+   +  GL +L      T  +  I HRD+KS NIL+ +N    ++DLGLA  
Sbjct: 136 MLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVK 191

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 74.7 bits (184), Expect = 6e-17
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           RL +    A+G++YL       I+HR++KS N+L+D+ +  KV D GL+++
Sbjct: 139 RLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL 188

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 3   RLKICIGAARGLHYLRT------GTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
             ++     RGL YL T        +  I HRD+ S N+L+  +    +SD GL+  
Sbjct: 113 SCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMR 169

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 3   RLKICIGAARGLHYLRTGTRNI-----IIHRDVKSTNILLDENWVAKVSDLGLAKVGPN- 56
            +K+ +  A GL +L            I HRD+KS NIL+ +N    ++DLGLA    + 
Sbjct: 141 MIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 200

Query: 57  ---MLTLCCYQSGTL 68
              +     ++ GT 
Sbjct: 201 TDTIDIAPNHRVGTK 215

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 72.4 bits (178), Expect = 4e-16
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
           R+      A G+ YL +   NII HRD+ S N L+ EN    V+D GLA++  +
Sbjct: 110 RVSFAKDIASGMAYLHS--MNII-HRDLNSHNCLVRENKNVVVADFGLARLMVD 160

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 71.1 bits (175), Expect = 7e-16
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            +K  +  ARG+ +L T    +I    + S ++++DE+  A++S   +   
Sbjct: 113 AVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDMTARISMADVKFS 162

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            + I    ARG+ YL    ++II HRD+KS NI L E+   K+ D GLA  
Sbjct: 122 LIDIARQTARGMDYLHA--KSII-HRDLKSNNIFLHEDNTVKIGDFGLATE 169

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 69.2 bits (170), Expect = 4e-15
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE--------NWVAKVSDLGLAKV 53
            +   +  ARG++YL       IIHRD+KS+NIL+ +        N + K++D GLA+ 
Sbjct: 107 LVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLARE 165

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-----NWVAKVSDLGLAKVGPNM 57
           +L++ +  A G+ Y++      I+HRD++S NI L          AKV+D GL++   + 
Sbjct: 124 KLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS 182

Query: 58  LTLCCYQSGTL 68
           ++      G  
Sbjct: 183 VSGLL---GNF 190

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
             +I     +G+ YL    + I+ H+D+KS N+  D N    ++D GL  +
Sbjct: 132 TRQIAQEIVKGMGYLHA--KGIL-HKDLKSKNVFYD-NGKVVITDFGLFSI 178

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 13  GLHYL--RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            L     R+   + ++HRD+K  N+ LD     K+ D GLA++
Sbjct: 123 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI 165

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTL 68
           A  L Y        +IHRD+K  N+LL      K++D G +   P+     LC    GTL
Sbjct: 119 ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLC----GTL 171

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            L++   AA G+ YL        IHRD+ + N L+ E  V K+SD G+++ 
Sbjct: 215 LLQMVGDAAAGMEYL---ESKCCIHRDLAARNCLVTEKNVLKISDFGMSRE 262

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           KI +   + L +L +     +IHRDVK +N+L++     K+ D G++
Sbjct: 113 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGIS 157

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTL 68
              Y+       I HRDVK +NIL+D+N   K+SD G ++   +           GT 
Sbjct: 163 SFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSR----GTY 214

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGT 67
            L ++       I+HRD+KS NI L ++   ++ D G+A+V  + + L     GT
Sbjct: 137 ALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGT 188

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           K+ +   + L+YL+   ++ +IHRDVK +NILLDE    K+ D G++
Sbjct: 128 KMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGQIKLCDFGIS 172

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLG 49
           KI +   + L++L+   +  IIHRD+K +NILLD +   K+ D G
Sbjct: 129 KITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFG 171

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTL 68
           A  LHY        +IHRD+K  N+L+      K++D G +   P++   T+C    GTL
Sbjct: 124 ADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMC----GTL 176

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 52.2 bits (125), Expect = 7e-09
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + +    A G+ Y+     N + HRD+++ NIL+ EN V KV+D GLA++
Sbjct: 366 VDMAAQIASGMAYV--ERMNYV-HRDLRAANILVGENLVCKVADFGLARL 412

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 52.1 bits (125), Expect = 7e-09
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L +    +  + YL    +N I HR++ + N L+ EN + KV+D GL+++
Sbjct: 321 LYMATQISSAMEYL--EKKNFI-HRNLAARNCLVGENHLVKVADFGLSRL 367

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 52.1 bits (125), Expect = 7e-09
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + +    A G+ Y+     N + HRD+++ NIL+ EN V KV+D GLA++
Sbjct: 283 VDMAAQIASGMAYV--ERMNYV-HRDLRAANILVGENLVCKVADFGLARL 329

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L++     +G+ Y+       +I+RD+K +NI L +    K+ D GL   
Sbjct: 125 LELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTS 171

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCY 63
            K  +     L ++       ++HRD+K  N+ +    V K+ DLGL +   +  T    
Sbjct: 139 WKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS 195

Query: 64  QSGT 67
             GT
Sbjct: 196 LVGT 199

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           K+ I   +GL YLR   +  I+HRDVK +NIL++     K+ D G++
Sbjct: 135 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVS 179

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 6/61 (9%), Positives = 14/61 (22%), Gaps = 5/61 (8%)

Query: 3   RLKICIGAARGLHYL-RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
              +     R    L   G    ++H      N+ +  +    + D+             
Sbjct: 196 LHILTAQLIRLAANLQSKG----LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPAS 251

Query: 62  C 62
            
Sbjct: 252 S 252

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           LK  +     + YL     N + HRD+ + N+L+ E+ VAKVSD GL K
Sbjct: 292 LKFSLDVCEAMEYL--EGNNFV-HRDLAARNVLVSEDNVAKVSDFGLTK 337

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 3   RLKICIGAARGLHYL-RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLTL 60
           RL++ +   R L  L   G    ++H  ++  +I+LD+     ++        G + ++ 
Sbjct: 213 RLQLTLQVIRLLASLHHYG----LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSP 268

Query: 61  CCYQSGT 67
                  
Sbjct: 269 IGRGFAP 275

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKV 53
           +GL +L T     IIHRD+K  NI +       K+ DLGLA +
Sbjct: 140 KGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L + +G  RGL  +         HRD+K TNILL +     + DLG    
Sbjct: 137 LWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L I +  A  + +L       ++HRD+K +NI    + V KV D GL   
Sbjct: 121 LHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTA 167

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
           IIHRD+K  NI +DE+   K+ D GLAK    
Sbjct: 137 IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHR 168

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 3   RLKICIGAARGLHYL-RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
           RL++ +   R L  L   G    ++H  ++  +I+LD+     ++           +   
Sbjct: 208 RLQLTLQVIRLLASLHHYG----LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSS 263

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           I     +GL YL        IHRD+K+ NILL+    AK++D G+A
Sbjct: 130 ILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVA 172

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           I  G  + L Y+        +HR VK+++IL+  +    +S L   
Sbjct: 133 ILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSN 175

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +  GA +GL YL +   + +IHRDVK+ NILL E  + K+ D G A
Sbjct: 159 VTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSA 201

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +      A G+ ++    RN I HRD+++ NIL+  + V K++D GLA+V
Sbjct: 287 IDFSAQIAEGMAFI--EQRNYI-HRDLRAANILVSASLVCKIADFGLARV 333

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +C    + L +L +   N +IHRD+KS NILL  +   K++D G  
Sbjct: 121 VCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFC 163

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L  C+  A+G++YL    R ++ HRD+ + N+L+      K++D GLAK+
Sbjct: 120 LNWCVQIAKGMNYLED--RRLV-HRDLAARNVLVKTPQHVKITDFGLAKL 166

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +++    + G+ YL     N + HRD+ + N+LL     AK+SD GL+K 
Sbjct: 120 IELVHQVSMGMKYL--EESNFV-HRDLAARNVLLVTQHYAKISDFGLSKA 166

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           IC    RGL +L    ++ +IHRD+K  N+LL EN   K+ D G++
Sbjct: 134 ICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVS 176

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
                     L +L +  + ++ H DVK  NI L      K+ D GL   
Sbjct: 160 WGYLRDTLLALAHLHS--QGLV-HLDVKPANIFLGPRGRCKLGDFGLLVE 206

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           L      A+G+ +L        IHRDV + N+LL    VAK+ D GLA
Sbjct: 167 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLA 211

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAK 52
            GL YL     N I+HRD+K  N+L++  + V K+SD G +K
Sbjct: 133 EGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSK 171

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +C      L++L +     IIHRD+K+ N+L+      +++D G++
Sbjct: 122 VCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVS 164

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT 59
           RGL Y+ +     IIHRD+K +N+ ++E+   K+ D GLA+   + +T
Sbjct: 143 RGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTADEMT 187

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L +C+    G+ YL       +IHRD+ + N L+ EN V KVSD G+ + 
Sbjct: 107 LGMCLDVCEGMAYL---EEACVIHRDLAARNCLVGENQVIKVSDFGMTRF 153

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            ++    + G+ YL    +N + HRD+ + N+LL     AK+SD GL+K 
Sbjct: 113 AELLHQVSMGMKYL--EEKNFV-HRDLAARNVLLVNRHYAKISDFGLSKA 159

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +C    + L YL       +IHRD+KS +ILL  +   K+SD G  
Sbjct: 146 VCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFC 188

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 4   LKICIGAARGLHYL-RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +   +     L YL   G    +++ D+K  NI+L E  + K+ DLG   
Sbjct: 185 IAYLLEILPALSYLHSIG----LVYNDLKPENIMLTEEQL-KLIDLGAVS 229

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L +    +  + YL    +   IHRD+ + N L+ EN + KV+D GL+++
Sbjct: 114 LYMATQISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRL 160

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           LK  +   +G+ YL  G+R  + HRD+ + N+L++     K+ D GL K 
Sbjct: 129 LKYAVQICKGMDYL--GSRQYV-HRDLAARNVLVESEHQVKIGDFGLTKA 175

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           LK  +     + YL     N  +HRD+ + N+L+ E+ VAKVSD GL K
Sbjct: 120 LKFSLDVCEAMEYL---EGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 165

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           I     +GL YL        IHRD+K+ N+LL E+   K++D G+A
Sbjct: 124 ILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVA 166

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 49.1 bits (117), Expect = 8e-08
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLAKV---GPNMLTLC 61
           G+++LR    N I+HR++K  NI+     D   V K++D G A+        ++L 
Sbjct: 124 GMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY 176

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 49.3 bits (117), Expect = 9e-08
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 13/65 (20%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAKV---GPNMLTLCCYQ 64
           +  L YL     N IIHRD+K  NI+L    +  + K+ DLG AK    G          
Sbjct: 131 SSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFV--- 184

Query: 65  SGTLG 69
            GTL 
Sbjct: 185 -GTLQ 188

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT 59
           +GL Y+       IIHRD+K  N+ ++E+   K+ D GLA+   + +T
Sbjct: 139 KGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMT 183

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L++C      + YL        +HRD+ + N L+++  V KVSD GL++ 
Sbjct: 123 LEMCKDVCEAMEYL---ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY 169

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 4   LKICIGAARGL---HYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +++   A + L   H      +N IIHRDVK  NI++      KV D G+A+
Sbjct: 119 IEVIADACQALNFSH------QNGIIHRDVKPANIMISATNAVKVMDFGIAR 164

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKV 53
           R +  L   + N+  HRD+K  N+L++  +   K+ D G AK 
Sbjct: 140 RSIGCLHLPSVNVC-HRDIKPHNVLVNEADGTLKLCDFGSAKK 181

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
              + I I  A  + +L       ++HRD+K +NI    + V KV D GL   
Sbjct: 166 CLHIFIQI--AEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTA 213

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L       +G+ YL  G+R  + HRD+ + NIL++     K++D GLAK+
Sbjct: 130 LLYSSQICKGMEYL--GSRRCV-HRDLAARNILVESEAHVKIADFGLAKL 176

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            ++    + G+ YL    +N + HR++ + N+LL     AK+SD GL+K 
Sbjct: 439 AELLHQVSMGMKYL--EEKNFV-HRNLAARNVLLVNRHYAKISDFGLSKA 485

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           LKI     R + ++    +  IIHRD+K  N+LL      K+ D G A  
Sbjct: 139 LKIFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATT 187

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L      ARG+ YL    +  I HRD+ + NIL+ EN+VAK++D GL++
Sbjct: 145 LHFAADVARGMDYL--SQKQFI-HRDLAARNILVGENYVAKIADFGLSR 190

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           G  YL    RN +IHRD+K  N+ L+E+   K+ D GLA
Sbjct: 127 GCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 162

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L +    A G+ ++        IHRD+++ NIL+ +    K++D GLA++
Sbjct: 112 LDMAAQIAEGMAFI---EERNYIHRDLRAANILVSDTLSCKIADFGLARL 158

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L++C     G+ +L     +  IHRD+ + N L+D +   KVSD G+ + 
Sbjct: 107 LEMCYDVCEGMAFL---ESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRY 153

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           LK  +  A G+ YL    RN + HRD+ + N +L ++    V+D GL+K
Sbjct: 150 LKFMVDIALGMEYL--SNRNFL-HRDLAARNCMLRDDMTVCVADFGLSK 195

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L  C+  A+G++YL    R ++ HRD+ + N+L+      K++D GLAK+
Sbjct: 120 LNWCVQIAKGMNYLED--RRLV-HRDLAARNVLVKTPQHVKITDFGLAKL 166

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L   +  A+G++YL     + ++HR++ + N+LL      +V+D G+A +
Sbjct: 118 LNWGVQIAKGMYYL---EEHGMVHRNLAARNVLLKSPSQVQVADFGVADL 164

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L+      +G+ YL  GT+  I HRD+ + NIL++     K+ D GL KV
Sbjct: 117 LQYTSQICKGMEYL--GTKRYI-HRDLATRNILVENENRVKIGDFGLTKV 163

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +   +  ARG+ YL        +HRD+ + N +LDE++  KV+D GLA+ 
Sbjct: 127 ISFGLQVARGMEYL---AEQKFVHRDLAARNCMLDESFTVKVADFGLARD 173

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +   +  A+G+ +L   ++  + HRD+ + N +LDE +  KV+D GLA+
Sbjct: 195 IGFGLQVAKGMKFL--ASKKFV-HRDLAARNCMLDEKFTVKVADFGLAR 240

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLAKV---GPNMLTLC 61
           G+++LR    N I+HR++K  NI+     D   V K++D G A+        ++L 
Sbjct: 124 GMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY 176

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            +  +  A G+ YL   ++  I HRD+ + N+LL    + K+ D GL + 
Sbjct: 124 SRYAVQVAEGMGYL--ESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRA 170

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +      ARG+ YL   ++  I HRD+ + N+L+ EN V K++D GLA+
Sbjct: 206 VSCTYQLARGMEYL--ASQKCI-HRDLAARNVLVTENNVMKIADFGLAR 251

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT 59
           +GL Y+ +     ++HRD+K  N+ ++E+   K+ D GLA+     +T
Sbjct: 137 KGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHADAEMT 181

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L+      +G+ YL  GT+  I HRD+ + NIL++     K+ D GL KV
Sbjct: 148 LQYTSQICKGMEYL--GTKRYI-HRDLATRNILVENENRVKIGDFGLTKV 194

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +   +  A+G+ YL   ++  + HRD+ + N +LDE +  KV+D GLA+
Sbjct: 131 IGFGLQVAKGMKYL--ASKKFV-HRDLAARNCMLDEKFTVKVADFGLAR 176

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 4   LKICIGAARGL---HYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +        G+   H         I+HRD+K  NIL+D N   K+ D G+AK
Sbjct: 114 INFTNQILDGIKHAH------DMRIVHRDIKPQNILIDSNKTLKIFDFGIAK 159

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAK 52
            GL YL       I+H DVK+ N+LL  +   A + D G A 
Sbjct: 161 EGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHAL 199

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA---KVGPNMLTLC 61
            + YLR      IIHRD+K  NI++ E++  K+ D G A   + G    T C
Sbjct: 142 AVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFC 190

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +      ARG+ YL        IHRD+ + N+L+ EN V K++D GLA+
Sbjct: 160 VSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLAR 205

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN---MLTLCCYQSGT 67
            L YL+      IIHRD+K  NILLDE+    ++D  +A + P    + T+     GT
Sbjct: 127 ALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMA----GT 177

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + +  G   G+ YL       + HRD+ + N+L+D N V KVSD GL++V
Sbjct: 154 VGMLRGVGAGMRYL--SDLGYV-HRDLAARNVLVDSNLVCKVSDFGLSRV 200

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           ++  +  A G+ YL   +    IHRD+ + N +L E+    V+D GL++
Sbjct: 140 VRFMVDIACGMEYL---SSRNFIHRDLAARNCMLAEDMTVCVADFGLSR 185

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           I      GL YL    +N  IHRDVK+ NILL E+   +++D G++
Sbjct: 126 ILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVS 168

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           L        G+ YL    ++ I HRD+ + N+LLD + + K+ D GLAK 
Sbjct: 137 LLFAQQICEGMAYL--HAQHYI-HRDLAARNVLLDNDRLVKIGDFGLAKA 183

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + +  G A G+ YL        +HRD+ + NIL++ N V KVSD GL++V
Sbjct: 150 VGMLRGIAAGMKYL---ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV 196

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           L      A+G+ +L        +HRD+ + N+L+    V K+ D GLA
Sbjct: 175 LCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLA 219

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +      +  L YL        +HRD+ + N+L+  N   K+ D GL++ 
Sbjct: 494 ILYAYQLSTALAYL---ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY 540

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           L      A+G+ +L        IHRD+ + NILL    + K+ D GLA
Sbjct: 148 LSFSYQVAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLA 192

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           G  YL    RN +IHRD+K  N+ L+E+   K+ D GLA
Sbjct: 153 GCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 188

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA---KVGPNML-TLCCYQSG 66
             G+ YL     + I+HRD+  +N+LL  N   K++D GLA   K+      TLC    G
Sbjct: 122 ITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLC----G 174

Query: 67  TL 68
           T 
Sbjct: 175 TP 176

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN--MLTLCCYQSGTLG 69
           GL ++       +++RD+K  NILLDE+   ++SDLGLA                GT G
Sbjct: 304 GLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV----GTHG 355

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +      ARG+ YL        IHRD+ + N+L+ E+ V K++D GLA+
Sbjct: 194 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLAR 239

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           + +  G A G+ YL   +    +HRD+ + NIL++ N V KVSD GL +V
Sbjct: 150 VGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLGRV 196

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           +GL +      N I+HRD+K  N+L+++    K+ D GLA
Sbjct: 119 QGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +      +  L YL        +HRD+ + N+L+  N   K+ D GL++ 
Sbjct: 119 ILYAYQLSTALAYL---ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY 165

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +      A+G+ +L        IHRD+ + NILL E  V K+ D GLA+
Sbjct: 151 ICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLAR 196

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           L I    A G+ YL        +HRD+ + N L+  N + K+ D G++
Sbjct: 136 LHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMS 180

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           +   +   + + YL        +HRD+   NIL+      K+ D GL++ 
Sbjct: 116 VLYSLQICKAMAYL---ESINCVHRDIAVRNILVASPECVKLGDFGLSRY 162

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           L +    A G+ YL        +HRD+ + N L+ +  V K+ D G++
Sbjct: 161 LAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 205

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 4   LKICIGAARGLHYL-RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           + I       L      G      HRDVK  NIL+  +  A + D G+A 
Sbjct: 137 VAIVRQIGSALDAAHAAG----ATHRDVKPENILVSADDFAYLVDFGIAS 182

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +      A+G+ +L   +R  I HRD+ + NILL E  V K+ D GLA+
Sbjct: 196 ICYSFQVAKGMEFL--ASRKCI-HRDLAARNILLSEKNVVKICDFGLAR 241

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           L I    A G+ YL    R  + HRD+ + N L+ EN V K++D GL++
Sbjct: 177 LCIARQVAAGMAYL--SERKFV-HRDLATRNCLVGENMVVKIADFGLSR 222

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML------TLCCYQSGT 67
           IIHRD+K  NILL+E+   +++D G AKV           +      GT
Sbjct: 151 IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV----GT 195

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +++    A G+ YL     N  +HRD+ + N ++ E++  K+ D G+ +
Sbjct: 141 IQMAGEIADGMAYL---NANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 186

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           G+ YL       IIHRD+K +N+L+ E+   K++D G++
Sbjct: 149 GIEYLH---YQKIIHRDIKPSNLLVGEDGHIKIADFGVS 184

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKV 53
           R + ++ +     I HRD+K  N+L++ ++   K+ D G AK 
Sbjct: 152 RAVGFIHSLG---ICHRDIKPQNLLVNSKDNTLKLCDFGSAKK 191

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +      ++G+ YL       ++HRD+ + NIL+ E    K+SD GL++
Sbjct: 153 ISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGLSR 198

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           GL YL       I+H+D+K  N+LL      K+S LG+A
Sbjct: 121 GLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVA 156

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
            GL+Y+    RN I+HRD+K+ N+L+  + V K++D GLA
Sbjct: 135 NGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLA 171

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +GL YL    ++ I+HRD+K  N+LLDEN V K++D GLAK
Sbjct: 123 QGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAK 160

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           + +    A G+ YL   + + ++H+D+ + N+L+ +    K+SDLGL 
Sbjct: 131 VHLVAQIAAGMEYL---SSHHVVHKDLATRNVLVYDKLNVKISDLGLF 175

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL +L     N I+HRD+K  NIL+      K++D GLA+
Sbjct: 131 RGLDFLH---ANCIVHRDLKPENILVTSGGTVKLADFGLAR 168

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
           RGL Y+ +     ++HRD+K +N+LL+     K+ D GLA+V
Sbjct: 139 RGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARV 177

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
            GLH L       ++HRD+   NILL +N    + D  LA+    
Sbjct: 145 LGLHVLHEAG---VVHRDLHPGNILLADNNDITICDFNLAREDTA 186

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
            G +++       IIHRD+K  N LL+++   KV D GLA
Sbjct: 140 LGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFGLA 176

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLV 71
            G+ Y+ +     I+HRD+K  N L++++   KV D GLA+              +    
Sbjct: 167 VGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPRED 223

Query: 72  VDPFLRGKIDPGCFKTFTD 90
               +         +  T 
Sbjct: 224 DMNLVTFPHTKNLKRQLTG 242

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKV---GPNMLTLC 61
           I+HRD+K  NILLD++   K++D G +     G  +  +C
Sbjct: 145 IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVC 184

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
            G+ +L +     IIHRD+K +NI++  +   K+ D GLA+    
Sbjct: 138 CGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 179

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKV---GPNMLTLC 61
           I+HRD+K  NILLD+N   ++SD G +     G  +  LC
Sbjct: 221 IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELC 260

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           R +  L       +IHRD+K +N+L++ N   KV D GLA
Sbjct: 123 RAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLA 159

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +GL +        ++HRD+K  N+L++ N   K+++ GLA+
Sbjct: 112 KGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLAR 149

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL +L     + ++HRD+K  NIL+  +   K++D GLA+
Sbjct: 131 RGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RG+ +     ++ I+HRD+K  N+L++ +   K++D GLA+
Sbjct: 130 RGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLAR 167

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKV 53
           R L Y+ +     I HRD+K  N+LLD +  V K+ D G AK 
Sbjct: 167 RSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 206

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKV---GPNMLTLCCYQSG 66
            + YL     N IIHRD+K  N+LL   +E+ + K++D G +K+      M TLC    G
Sbjct: 251 AVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLC----G 303

Query: 67  TLGLV 71
           T   +
Sbjct: 304 TPTYL 308

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 22  RNIIIHRDVKSTNILLDENWVAKVSDLGLAKV-----GPNMLTLCC 62
              I HRD+K  N+LLDE    K+SD GLA V        +L   C
Sbjct: 123 GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           + + YL +G    ++HRD+K +NILL+     KV+D GL+
Sbjct: 120 KVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLS 156

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 22  RNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           R++++HRD+K  N+LLD +  AK++D GL+
Sbjct: 134 RHMVVHRDLKPENVLLDAHMNAKIADFGLS 163

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN--MLT 59
            G+ +L +     IIHRD+K +NI++  +   K+ D GLA+      M+T
Sbjct: 175 CGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT 221

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 22  RNIIIHRDVKSTNILLDENWVAKVSDLGLAKV-----GPNMLTLCC 62
              I HRD+K  N+LLDE    K+SD GLA V        +L   C
Sbjct: 123 GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           +GL +      + ++HRD+K  N+L++     K++D GLA+
Sbjct: 114 QGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
           + +++     ++  IHRDVK  NIL+ ++ V K+ D G A
Sbjct: 113 QAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFA 149

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           RGL Y     R  ++HRD+K  N+L++E    K++D GLA+
Sbjct: 111 RGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLAR 148

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
            G+ Y        ++HRD+K  N+L++     K++D GLA+
Sbjct: 111 NGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLAR 148

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKV 53
           R L Y+ +    I  HRD+K  N+LLD    V K+ D G AK+
Sbjct: 152 RSLAYIHS--IGIC-HRDIKPQNLLLDPPSGVLKLIDFGSAKI 191

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
            +H +    ++ I+H D+K  N L+ +  + K+ D G+A 
Sbjct: 167 AVHTIH---QHGIVHSDLKPANFLIVDGML-KLIDFGIAN 202

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 22  RNIIIHRDVKSTNILLDENWVAKVSDLGLAKV--GPNMLTLCC 62
           +  I+HRD+K+ N+LLD +   K++D G +        L   C
Sbjct: 132 QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFC 174

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP 55
           GL +L    +  II+RD+K  N+LLD++   ++SDLGLA    
Sbjct: 301 GLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 22  RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP--NMLTLCC 62
           R+ I+HRD+K  N+LLD+N   K++D GL+ +    N L   C
Sbjct: 126 RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSC 168

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA 51
            G+ +      + IIHRD+K  NIL+ ++ V K+ D G A
Sbjct: 135 NGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFA 171

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
           GL  L    R  I++RD+K  NILLD++   ++SDLGLA 
Sbjct: 298 GLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAV 334

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 22  RNIIIHRDVKSTNILLDENWVAKVSDLGLAKV--GPNMLTLCC 62
           R++++HRD+K  N+LLD +  AK++D GL+ +      L   C
Sbjct: 129 RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC 171

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
            +H +    ++ I+H D+K  N L+ +  + K+ D G+A  
Sbjct: 120 AVHTIH---QHGIVHSDLKPANFLIVDGML-KLIDFGIANQ 156

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 11  ARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
              +H +    ++ I+H D+K  N L+ +  + K+ D G+A  
Sbjct: 137 LEAVHTIH---QHGIVHSDLKPANFLIVDGML-KLIDFGIANQ 175

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAK 52
           L +    A G  YL     N  IHRD+ + N LL       VAK+ D G+A+
Sbjct: 143 LHVARDIACGCQYL---EENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMAR 191

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLTLCCYQSGT 67
           +I+RD+K  N+L+D+    +V+D G AK V     TLC    GT
Sbjct: 162 LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLC----GT 201

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 9/55 (16%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKV---GPNMLTLC 61
            + YL     N IIHRD+K  N+LL   +E+ + K++D G +K+      M TLC
Sbjct: 126 AVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLC 177

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--------ENWVAKVSDLGLAK 52
           +W+L++    A  +H+L     N +IH +V + NILL              K+SD G++ 
Sbjct: 113 LWKLEVAKQLAAAMHFL---EENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISI 169

Query: 53  V 53
            
Sbjct: 170 T 170

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAK 52
           L +    A G  YL     N  IHRD+ + N LL       VAK+ D G+A+
Sbjct: 184 LHVARDIACGCQYL---EENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMAR 232

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 5/44 (11%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM-LTLCCYQSGT 67
           II+RD+K  NILLD+N   K++D G AK  P++  TLC    GT
Sbjct: 127 IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLC----GT 166

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 7/44 (15%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLA 51
            G+HYL     N ++HRD+K  NIL+     E    K++D+G A
Sbjct: 139 DGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFA 179

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 5   KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-----NWVAKVSDLGLAKV 53
            +      GL +L       I+HRD+K  NIL+          A +SD GL K 
Sbjct: 122 TLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK 172

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAK-VGPNMLTLCCY 63
           I HRDVK  N+L    +++ V K++D G AK    N L   CY
Sbjct: 149 IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCY 191

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKV 53
           RGL Y+ +     ++HRD+K  N+ ++ E+ V K+ D GLA++
Sbjct: 131 RGLKYIHSAN---VLHRDLKPANLFINTEDLVLKIGDFGLARI 170

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLDENWVA-----KVSDLGLAK 52
            G+++         +HRD+K  N+LL  +  +     K+ D GLA+
Sbjct: 143 NGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAKV---GPNMLTLCCYQSGTLGLV 71
           I HRDVK  N+L      N + K++D G AK      ++ T C     T   V
Sbjct: 182 IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPC----YTPYYV 230

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 22  RNIIIHRDVKSTNILLDENWVA--KVSDLGLAKV 53
              I HRD+K  N LLD +     K+ D G +K 
Sbjct: 134 SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKS 167

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCY 63
             + +   RGL Y+ +     ++H D+K +NI +    +   +     +       +  +
Sbjct: 118 KDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKV-MF 173

Query: 64  QSGTLGLV 71
           + G LG V
Sbjct: 174 KIGDLGHV 181

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK 52
            +HRD+K  NIL+D N   +++D G   
Sbjct: 196 YVHRDIKPDNILMDMNGHIRLADFGSCL 223

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK 52
            IHRDVK  N+LLD++   K++D G   
Sbjct: 189 FIHRDVKPDNMLLDKSGHLKLADFGTCM 216

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
            L YL +     +++RD+K  N++LD++   K++D GL K G
Sbjct: 260 ALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEG 299

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 11/54 (20%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAKV----GPNMLTLCCYQSGTLGLV 71
           ++HRD+K  N+L    ++N   K+ D G A++       + T C     TL   
Sbjct: 127 VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC----FTLHYA 176

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 13/59 (22%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILL--DENWVAKVSDLGLAKV--------GPNMLTLC 61
            LHYL       I HRD+K  N L   ++++  K+ D GL+K            M T  
Sbjct: 180 ALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKA 235

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAK 52
            +HRD+K  NILLD     +++D G   
Sbjct: 183 YVHRDIKPDNILLDRCGHIRLADFGSCL 210

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 9/50 (18%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAKVGPN--MLTLCCYQSGTLG 69
           I+HRD+K  N+L    +EN    ++D GL+K+  N  M T C    GT G
Sbjct: 127 IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTAC----GTPG 172

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAKV---GPNMLTLCCYQSGTLGLVVDPFLRG 78
           I+HRD+K  N+LL   +++ + K+ D GL+ V      M        GT   +    LR 
Sbjct: 157 IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERL----GTAYYIAPEVLRK 212

Query: 79  KIDPGC 84
           K D  C
Sbjct: 213 KYDEKC 218

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 28/78 (35%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLD-------------ENWVAKVSDLGLAK------- 52
           G+ +L       IIHRD+K  NIL+              EN    +SD GL K       
Sbjct: 127 GVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQS 183

Query: 53  -VGPNMLTLCCYQSGTLG 69
               N+        GT G
Sbjct: 184 SFRTNLNNPS----GTSG 197

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAKV---GPNMLTLCCYQSGTLGLVVDPFLRG 78
           I+HRD+K  N+LL    ++   ++ D GL+        M        GT   +    L G
Sbjct: 147 IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI----GTAYYIAPEVLHG 202

Query: 79  KIDPGC 84
             D  C
Sbjct: 203 TYDEKC 208

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAKV---GPNMLTLCCYQSGTLGLVVDPFLRG 78
           I+HRD+K  NILL   +++   K+ D GL+        M        GT   +    LRG
Sbjct: 142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRI----GTAYYIAPEVLRG 197

Query: 79  KIDPGC 84
             D  C
Sbjct: 198 TYDEKC 203

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 12  RGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVG 54
           + L Y  +     I+HRDVK  N+++D E+   ++ D GLA+  
Sbjct: 141 KALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY 181

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
            L+YL       II+RD+K  N+LLD     K++D G+ K G
Sbjct: 165 ALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 203

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 12/63 (19%)

Query: 93  KKCLADRGCDRPQMGDVLCNLGLAWRQQG----AVDHY-----IQEDIVSTCGHPYIANI 143
           +  +     D   +  +   LG A+   G    A+ ++     + + +         A  
Sbjct: 72  QAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM---NDRLGEAKS 128

Query: 144 NGN 146
           +GN
Sbjct: 129 SGN 131

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
            L +L       II+RD+K  N+LLD     K++D G+ K G
Sbjct: 136 ALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEG 174

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
            L YL       +++RD+K  N++LD++   K++D GL K G
Sbjct: 117 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEG 155

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGL-AKVGPNMLTLCC 62
            + +        ++HRD+K  NIL+D N    K+ D G  A +   + T   
Sbjct: 161 AVRHC---HNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFD 209

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK--VGPNMLT 59
            L+YL       II+RD+K  N+LLD     K++D G+ K  + P   T
Sbjct: 122 ALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT 167

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 13  GLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
            L YL       I++RD+K  NILLD      ++D GL K  
Sbjct: 151 ALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKEN 189

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
           II+RD+K  NILLD N    ++D GL+K  
Sbjct: 180 IIYRDIKLENILLDSNGHVVLTDFGLSKEF 209

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
           II+RD+K  NI+L+     K++D GL K  
Sbjct: 142 IIYRDLKPENIMLNHQGHVKLTDFGLCKES 171

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 25  IIHRDVKSTNILLDENWVAKVSDLGLAKVG 54
           II+RD+K  NILLDE    K++D GL+K  
Sbjct: 147 IIYRDLKPENILLDEEGHIKLTDFGLSKES 176

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 18/59 (30%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAKV-----------GPNMLTLCCYQSGTLG 69
           I HRD+K  NIL    ++    K+ D  L               P +LT C    G+  
Sbjct: 132 IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPC----GSAE 186

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 12/63 (19%)

Query: 93  KKCLADRGCDRPQMGDVLCNLGLAWRQQG----AVDHY-----IQEDIVSTCGHPYIANI 143
           +  +     D   +  +   LG A+        A++++     +   I         A  
Sbjct: 33  EAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGEAKA 89

Query: 144 NGN 146
           +GN
Sbjct: 90  SGN 92

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 10/53 (18%)

Query: 25  IIHRDVKSTNILL---DENWVAKVSDLGLAKV---GPNMLTLCCYQSGTLGLV 71
           I+HRD+K  N+L      +   K++D GL+K+      M T+C    GT G  
Sbjct: 169 IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVC----GTPGYC 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.94
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.94
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.94
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.93
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.93
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.92
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.92
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.89
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.89
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.89
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.89
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.88
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.87
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.87
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.86
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.85
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.84
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.84
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.83
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.83
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.82
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.82
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.82
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.82
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.82
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.82
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.82
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.82
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.82
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.82
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.82
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.82
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.82
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.82
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.81
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.81
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.81
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.81
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.81
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.81
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.81
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.81
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.8
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.8
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.8
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.8
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.8
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.8
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.8
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.8
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.8
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.8
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.8
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.8
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.8
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.8
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.8
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.79
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.79
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.79
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.79
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.79
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.79
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.79
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.79
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.79
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.79
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.79
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.79
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.79
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.79
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.79
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.79
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.79
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.79
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.78
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.78
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.78
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.78
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.78
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.78
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.78
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.78
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.78
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.78
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.78
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.78
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.78
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.77
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.77
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.77
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.77
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.77
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.77
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.77
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.77
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.77
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.77
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.77
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.76
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.76
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.76
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.76
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.76
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.76
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.76
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.76
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.76
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.76
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.76
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.76
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.76
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.76
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.75
3niz_A	311	Rhodanese family protein; structural genomics, str	99.75
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.75
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.75
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.75
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.75
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.75
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.75
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.75
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.74
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.74
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.74
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.74
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.74
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.74
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.74
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.74
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.74
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.74
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.74
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.74
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.74
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.74
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.74
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.74
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.74
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.74
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.74
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.73
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.73
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.73
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.73
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.73
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.73
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.73
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.73
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.73
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.73
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.73
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.73
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.72
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.72
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.72
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.72
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.72
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.72
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.72
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.72
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.72
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.72
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.72
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.71
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.71
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.71
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.71
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.71
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.71
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.71
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.71
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.71
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.71
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.71
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.71
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.71
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.71
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.71
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.71
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.71
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.71
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.71
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.71
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.71
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.7
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.7
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.7
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.7
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.7
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.7
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.7
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.7
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.7
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.7
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.7
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.7
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.7
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.7
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.7
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.7
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.69
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.69
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.69
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.69
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.69
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.69
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.69
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.69
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.69
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.69
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.69
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.69
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.69
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.69
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.69
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.69
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.69
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.68
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.68
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.68
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.68
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.68
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.68
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.68
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.68
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.68
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.68
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.68
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.67
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.67
3bhy_A	283	Death-associated protein kinase 3; death associate	99.67
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.67
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.66
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.66
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.66
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.66
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.66
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.65
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.65
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.64
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.64
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.64
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.63
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.63
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.62
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.62
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.61
3uqc_A	286	Probable conserved transmembrane protein; structur	99.59
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.59
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.47
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.1
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.1
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.94
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.19
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.15
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.01
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	96.56
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	95.63
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	94.96
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	93.86
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	91.13
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	90.96
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	90.05
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	89.79
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	89.48
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	89.14
3ats_A	357	Putative uncharacterized protein; hypothetical pro	88.15
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	85.83
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	84.33
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	83.46
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	82.72
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	82.3
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	80.54

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.94  E-value=3.9e-27  Score=173.17  Aligned_cols=114  Identities=28%  Similarity=0.455  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ++++|+.|||.||.|||+   .+|+||||||.|||++.++.+||+|||+++......  .......|++.|++||.+.+ 
T Consensus       133 ~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~  209 (307)
T 3omv_A          133 QLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQ  209 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhcc
Confidence            578899999999999995   559999999999999999999999999998765321  12234578999999987632 


Q ss_pred             ---------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 ---------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ---------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                         ..+.+++.++.+|+.+||+.||++||||.
T Consensus       210 ~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~  289 (307)
T 3omv_A          210 DNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFP  289 (307)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHH
T ss_pred             CCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHH
Confidence                                                               11235778999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 044888          108 DVLCNLGLAWR  118 (154)
Q Consensus       108 ~v~~~L~~~~~  118 (154)
                      ||++.|+.+..
T Consensus       290 ei~~~Le~l~~  300 (307)
T 3omv_A          290 QILSSIELLQH  300 (307)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999987754

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.94  E-value=3.1e-27  Score=175.33  Aligned_cols=116  Identities=18%  Similarity=0.205  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ++++|+.||+.||.|||+   .+|+||||||.|||++.++.+||+|||+++......  .......|++.|++||.+.+ 
T Consensus       159 ~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~  235 (329)
T 4aoj_A          159 QLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYR  235 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhc---CCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCC
Confidence            468999999999999995   559999999999999999999999999998764321  11223456777777776543 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  +.|..++.++.+|+.+||+.||++||||.||++.|+
T Consensus       236 ~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~  315 (329)
T 4aoj_A          236 KFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQ  315 (329)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHH
T ss_pred             CCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHH
Confidence                                                        345668899999999999999999999999999999


Q ss_pred             HHHHhc
Q 044888          115 LAWRQQ  120 (154)
Q Consensus       115 ~~~~~~  120 (154)
                      .+.+..
T Consensus       316 ~l~~~p  321 (329)
T 4aoj_A          316 ALAQAP  321 (329)
T ss_dssp             HHHHSC
T ss_pred             HHhhCC
Confidence            987653

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.94  E-value=3.7e-27  Score=176.38  Aligned_cols=117  Identities=21%  Similarity=0.252  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      +++.|+.|||.||.|||+   .+++|||||+.|||++.++.+||+|||+++.......  ......|++.|++||.+.+ 
T Consensus       186 ~~~~~~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~  262 (353)
T 4ase_A          186 HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR  262 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhHhh---CCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcC
Confidence            467899999999999995   5599999999999999999999999999987644221  2223356667777665532 


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                   ..|..++.++++++..||+.||++||||.||++.|
T Consensus       263 ~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L  342 (353)
T 4ase_A          263 VYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  342 (353)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHH
Confidence                                                         34556788999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 044888          114 GLAWRQQG  121 (154)
Q Consensus       114 ~~~~~~~~  121 (154)
                      +.+++...
T Consensus       343 ~~llq~~~  350 (353)
T 4ase_A          343 GNLLQANA  350 (353)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhh
Confidence            99987543

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.93  E-value=4e-27  Score=173.34  Aligned_cols=112  Identities=19%  Similarity=0.246  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ++++|+.|||.||.|||+   .+++|||||+.|||++.++.+||+|||+++......  .......|++.|++||.+.+ 
T Consensus       146 ~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~  222 (308)
T 4gt4_A          146 DFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYG  222 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCC
Confidence            468899999999999995   459999999999999999999999999998654321  11223456677777765532 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  +.+..++..+++|+.+||+.||++||||.||++.|+
T Consensus       223 ~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~  302 (308)
T 4gt4_A          223 KFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLR  302 (308)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence                                                        345678999999999999999999999999999998


Q ss_pred             HH
Q 044888          115 LA  116 (154)
Q Consensus       115 ~~  116 (154)
                      ..
T Consensus       303 a~  304 (308)
T 4gt4_A          303 AW  304 (308)
T ss_dssp             TS
T ss_pred             hc
Confidence            54

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.93  E-value=4.6e-27  Score=172.40  Aligned_cols=117  Identities=17%  Similarity=0.187  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-   78 (154)
                      ++++|+.||+.||.|||+   .+|+||||||.|||++.++.+||+|||+++........  .....|++.|++||.+.+ 
T Consensus       129 ~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~  205 (299)
T 4asz_A          129 QMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYR  205 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCC
Confidence            468899999999999995   55999999999999999999999999999865432111  112346667777665532 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  +.|..++.++.+|+.+||+.||++||||.+|+..|+
T Consensus       206 ~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~  285 (299)
T 4asz_A          206 KFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQ  285 (299)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence                                                        345678899999999999999999999999999999


Q ss_pred             HHHHhcC
Q 044888          115 LAWRQQG  121 (154)
Q Consensus       115 ~~~~~~~  121 (154)
                      .+.+..+
T Consensus       286 ~~~~~~p  292 (299)
T 4asz_A          286 NLAKASP  292 (299)
T ss_dssp             HHHHHSC
T ss_pred             HHHhcCC
Confidence            9877543

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.92  E-value=1.1e-25  Score=165.32  Aligned_cols=119  Identities=25%  Similarity=0.311  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHHhhcC-----CCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc----eeeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTG-----TRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT----LCCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~-----~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~g~~~~~~   72 (154)
                      ++++++.|++.||.|||+.     ..++|+||||||.|||++.++.+||+|||+++.......    ......|++.|++
T Consensus       101 ~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymA  180 (303)
T 3hmm_A          101 GMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA  180 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccC
Confidence            5789999999999999965     134799999999999999999999999999977644221    1123467888888


Q ss_pred             CccccCC------------------------------------------------------------------CC-----
Q 044888           73 DPFLRGK------------------------------------------------------------------ID-----   81 (154)
Q Consensus        73 ~~~~~~~------------------------------------------------------------------~~-----   81 (154)
                      ||.+.+.                                                                  .+     
T Consensus       181 PE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~  260 (303)
T 3hmm_A          181 PEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQS  260 (303)
T ss_dssp             HHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGS
T ss_pred             HHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccc
Confidence            8765320                                                                  00     


Q ss_pred             cchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhc
Q 044888           82 PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ  120 (154)
Q Consensus        82 ~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~  120 (154)
                      .+++..+.+|+.+||+.||++||||.||++.|+++.+..
T Consensus       261 ~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~  299 (303)
T 3hmm_A          261 CEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  299 (303)
T ss_dssp             SHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHc
Confidence            124457889999999999999999999999999887643

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.92  E-value=9.6e-25  Score=162.12  Aligned_cols=118  Identities=25%  Similarity=0.301  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCCCcc-----eeeecccccccccCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPNMLT-----LCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~~~~-----~~~~~~g~~~~~~~~~~   76 (154)
                      ...++.|++.||.|||   ..+|+||||||.|||++.++ .+||+|||+++.......     ......|++.|++||.+
T Consensus       152 ~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  228 (336)
T 4g3f_A          152 ALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVV  228 (336)
T ss_dssp             HHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHH
Confidence            4678999999999999   55699999999999999887 599999999987654211     12234699999999988


Q ss_pred             cC----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           77 RG----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        77 ~~----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                      .+                                              ..++.++..+.+++.+||+.||++|||+.|++
T Consensus       229 ~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~  308 (336)
T 4g3f_A          229 MGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELR  308 (336)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHH
Confidence            65                                              12345778899999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 044888          111 CNLGLAWRQQGAV  123 (154)
Q Consensus       111 ~~L~~~~~~~~~~  123 (154)
                      +.|...+......
T Consensus       309 ~~l~~~l~~~~~l  321 (336)
T 4g3f_A          309 RKVGKALQEVGGL  321 (336)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             HHHHHHHhhhhhc
Confidence            9999888765543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.89  E-value=7e-24  Score=158.00  Aligned_cols=106  Identities=21%  Similarity=0.262  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+|+||||||.|||++.++.+||+|||+++.............|++.|++||.+.+    
T Consensus       172 ~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~  248 (346)
T 4fih_A          172 IAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYG  248 (346)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCC
Confidence            45789999999999994   55999999999999999999999999999887665555556789999999998764    


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                ......+.++.+|+.+||+.||++|||+.|+++
T Consensus       249 ~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          249 PEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                                                      111245678999999999999999999999874

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.89  E-value=2.1e-24  Score=161.03  Aligned_cols=106  Identities=21%  Similarity=0.287  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...|+.|++.||.|||   ..+|+||||||.|||++.++.+||+|||+++.............|++.|++||.+.+    
T Consensus       127 ~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~  203 (350)
T 4b9d_A          127 ILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYN  203 (350)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCC
Confidence            4578999999999999   456999999999999999999999999999887543333334568999999998865    


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              +.+...+.++.+|+.+||+.||++|||+.|+++
T Consensus       204 ~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          204 NKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                                    123356788999999999999999999999975

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.89  E-value=1.6e-23  Score=152.90  Aligned_cols=106  Identities=27%  Similarity=0.400  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKI-   80 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-   80 (154)
                      ...|+.|++.||.|||+.. ++|+||||||.|||++ .++.+||+|||+++.....  ......|++.|++||.+.+.+ 
T Consensus       131 ~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~--~~~~~~GTp~YmAPE~~~~~y~  207 (290)
T 3fpq_A          131 LRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS--FAKAVIGTPEFMAPEMYEEKYD  207 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT--SBEESCSSCCCCCGGGGGTCCC
T ss_pred             HHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCCCC--ccCCcccCccccCHHHcCCCCC
Confidence            4578999999999999542 3499999999999997 4789999999999875543  233567999999999886611 


Q ss_pred             --------------------------------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           81 --------------------------------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        81 --------------------------------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  +...+.++.+|+.+||+.||++|||+.|+++
T Consensus       208 ~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          208 ESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                                        1224567899999999999999999999875

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=158.28  Aligned_cols=106  Identities=21%  Similarity=0.262  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...|+.|++.||.|||+   .+|+||||||.|||++.++.+||+|||+++.+...........|+..|++||.+.+    
T Consensus       249 ~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~  325 (423)
T 4fie_A          249 IAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYG  325 (423)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCC
Confidence            45689999999999994   55999999999999999999999999999887655444556679999999998765    


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                ......+.++.+|+.+||+.||++|||+.|+++
T Consensus       326 ~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          326 PEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                                                      112345778999999999999999999999874

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.88  E-value=3.6e-23  Score=149.97  Aligned_cols=105  Identities=19%  Similarity=0.300  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+|+||||||.||+++.++.+||+|||+++..... .......|++.|++||.+.+    
T Consensus       114 ~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~-~~~~~~~GT~~Y~APE~~~~~~y~  189 (275)
T 3hyh_A          114 ARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG-NFLKTSCGSPNYAAPEVISGKLYA  189 (275)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCSSCC----------------CTTSCHHHHSSSSCC
T ss_pred             HHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeecCCCeecCCC-CccCCeeECcccCChhhhcCCCCC
Confidence            45789999999999994   55999999999999999999999999999876542 22234579999999998765    


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ..+...+.++.+++.+||+.||++|||+.|+++
T Consensus       190 ~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          190 GPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence                                                    223445678899999999999999999999975

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.87  E-value=5.1e-23  Score=151.07  Aligned_cols=101  Identities=22%  Similarity=0.162  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+|+||||||.|||++.++.+||+|||+++......+......|++.|++||.+.+    
T Consensus       128 ~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~  204 (304)
T 3ubd_A          128 VKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHT  204 (304)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCC
Confidence            35688999999999994   55999999999999999999999999999876544444445679999999998764    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                             ..+...+.++.+|+.+||+.||++|||.
T Consensus       205 ~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          205 QSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             CCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence                                                   2345567889999999999999999985

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.87  E-value=4.5e-23  Score=151.19  Aligned_cols=106  Identities=23%  Similarity=0.310  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc------------eeeeccccccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT------------LCCYQSGTLGL   70 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~------------~~~~~~g~~~~   70 (154)
                      .+.++.|++.||.|||+   .+|+||||||.|||++.++.+||+|||+++.......            ......|++.|
T Consensus       120 ~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y  196 (299)
T 4g31_A          120 CLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLY  196 (299)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTT
T ss_pred             HHHHHHHHHHHHHHHHH---CcCccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccc
Confidence            35789999999999995   5599999999999999999999999999987654211            11234699999


Q ss_pred             ccCccccCC---------------------------------------CCc---chHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           71 VVDPFLRGK---------------------------------------IDP---GCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        71 ~~~~~~~~~---------------------------------------~~~---~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                      ++||.+.+.                                       .++   .......+++.+||+.||++|||+.|
T Consensus       197 mAPE~~~~~~y~~~~DiwSlGvilyell~Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  276 (299)
T 4g31_A          197 MSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAIN  276 (299)
T ss_dssp             SCHHHHTTCCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             cCHHHHcCCCCCCHHHHHHHHHHHHHHccCCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHH
Confidence            999987651                                       111   12234567999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      +++
T Consensus       277 il~  279 (299)
T 4g31_A          277 IIE  279 (299)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            875

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.86  E-value=1.7e-22  Score=148.58  Aligned_cols=104  Identities=27%  Similarity=0.289  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC--cceeeecccccccccCccccC---
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ..++.|++.||.|||+   .+|+||||||.|||++.++.+||+|||+++.+...  ........|++.|++||.+.+   
T Consensus       135 ~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y  211 (311)
T 4aw0_A          135 RFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSA  211 (311)
T ss_dssp             HHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCB
T ss_pred             HHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCC
Confidence            4678999999999994   55999999999999999999999999999887542  223345679999999998754   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                              .++...+.++.+|+.+||+.||++|||+.|+.
T Consensus       212 ~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          212 CKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence                                                    33455677899999999999999999999874

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.85  E-value=1.5e-21  Score=143.43  Aligned_cols=119  Identities=24%  Similarity=0.419  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCC--cEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNI--IIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~--i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .++.++.|++.||.|||   ..+  ++|+||+|.||+++.++.+||+|||+++.............|+..+++||.+.+ 
T Consensus       138 ~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  214 (309)
T 3p86_A          138 RRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDE  214 (309)
T ss_dssp             HHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCC
Confidence            35788999999999999   555  999999999999999999999999999765443222333455666666665433 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ..+...+..+.+++.+||+.+|++||++.+|++.|+
T Consensus       215 ~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~  294 (309)
T 3p86_A          215 PSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLR  294 (309)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence                                                        233456778999999999999999999999999999


Q ss_pred             HHHHhcCCC
Q 044888          115 LAWRQQGAV  123 (154)
Q Consensus       115 ~~~~~~~~~  123 (154)
                      .+.+...++
T Consensus       295 ~~~~~~~p~  303 (309)
T 3p86_A          295 PLIKSAVPP  303 (309)
T ss_dssp             HHHC-----
T ss_pred             HHHHhCCCC
Confidence            988755443

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.84  E-value=3.4e-21  Score=141.01  Aligned_cols=116  Identities=27%  Similarity=0.323  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--------------eeecccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--------------CCYQSGT   67 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--------------~~~~~g~   67 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........              .....|+
T Consensus       109 ~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  185 (310)
T 3s95_A          109 QRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGN  185 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCSC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCC
Confidence            467899999999999994   55999999999999999999999999999776432211              0133566


Q ss_pred             cccccCccccC----------------------------------------------CCCcchHHHHHHHHHHhhccCCC
Q 044888           68 LGLVVDPFLRG----------------------------------------------KIDPGCFKTFTDIAKKCLADRGC  101 (154)
Q Consensus        68 ~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~  101 (154)
                      ..+++||.+.+                                              ..+..++..+.+++.+||+.||+
T Consensus       186 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~  265 (310)
T 3s95_A          186 PYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPE  265 (310)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHHHHTCSSGG
T ss_pred             cceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHHHHHHHHHHccCChh
Confidence            67777765543                                              11344566789999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhc
Q 044888          102 DRPQMGDVLCNLGLAWRQQ  120 (154)
Q Consensus       102 ~RP~~~~v~~~L~~~~~~~  120 (154)
                      +||++.++++.|+.+....
T Consensus       266 ~Rps~~~l~~~L~~l~~~~  284 (310)
T 3s95_A          266 KRPSFVKLEHWLETLRMHL  284 (310)
T ss_dssp             GSCCHHHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHHhc
Confidence            9999999999999987643

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.84  E-value=5e-21  Score=143.83  Aligned_cols=116  Identities=22%  Similarity=0.306  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~--   78 (154)
                      .+.++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.......  ......++..|++||.+.+  
T Consensus       205 ~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  281 (370)
T 2psq_A          205 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRV  281 (370)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHh---CCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCC
Confidence            46789999999999994   5699999999999999999999999999975543111  0111122233443332211  


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                 ..+..++..+.+++..||+.+|++||++.|+++.|+.
T Consensus       282 ~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~  361 (370)
T 2psq_A          282 YTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR  361 (370)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence                                                       2344567899999999999999999999999999999


Q ss_pred             HHHhcC
Q 044888          116 AWRQQG  121 (154)
Q Consensus       116 ~~~~~~  121 (154)
                      +.....
T Consensus       362 il~~~~  367 (370)
T 2psq_A          362 ILTLTT  367 (370)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            987654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.83  E-value=1.6e-20  Score=140.47  Aligned_cols=119  Identities=16%  Similarity=0.120  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec--CCCcEEEecCCCcccCCCCcc-------eeeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--ENWVAKVSDLGLAKVGPNMLT-------LCCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~--~~~~~kl~dfg~~~~~~~~~~-------~~~~~~g~~~~~~   72 (154)
                      +++.++.|++.||.|||+   .+++||||||.||+++  .++.+||+|||+++.......       ......|+..|++
T Consensus       153 ~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a  229 (364)
T 3op5_A          153 TVLQLSLRILDILEYIHE---HEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTS  229 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccC
Confidence            467899999999999995   5699999999999998  889999999999976543211       1122347777877


Q ss_pred             CccccC------------------------CCC------------------------------cchHHHHHHHHHHhhcc
Q 044888           73 DPFLRG------------------------KID------------------------------PGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        73 ~~~~~~------------------------~~~------------------------------~~~~~~~~~l~~~C~~~   98 (154)
                      ||.+.+                        ++.                              ..++.++.+++..||+.
T Consensus       230 PE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  309 (364)
T 3op5_A          230 IDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLL  309 (364)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTC
T ss_pred             HHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcC
Confidence            776544                        111                              23367889999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCC
Q 044888           99 RGCDRPQMGDVLCNLGLAWRQQGAV  123 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~~~~~~~  123 (154)
                      +|++||++.+|++.|+.+.+.....
T Consensus       310 ~p~~RP~~~~l~~~l~~~~~~~~~~  334 (364)
T 3op5_A          310 DYTEKPLYENLRDILLQGLKAIGSK  334 (364)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999998865544

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.82  E-value=2.1e-20  Score=137.76  Aligned_cols=119  Identities=27%  Similarity=0.283  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCC-------CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGT-------RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~-------~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~   72 (154)
                      .++.++.|++.||.|||+..       ..+++|+||||.||+++.++.+||+|||+++........  .....|+..+++
T Consensus       122 ~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~a  201 (322)
T 3soc_A          122 ELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMA  201 (322)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccC
Confidence            46788999999999999530       117999999999999999999999999999765432211  112345566666


Q ss_pred             CccccCC-----------------------------------------------------------------------CC
Q 044888           73 DPFLRGK-----------------------------------------------------------------------ID   81 (154)
Q Consensus        73 ~~~~~~~-----------------------------------------------------------------------~~   81 (154)
                      ||.+.+.                                                                       ..
T Consensus       202 PE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (322)
T 3soc_A          202 PEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQK  281 (322)
T ss_dssp             HHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGS
T ss_pred             HhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccc
Confidence            6544320                                                                       00


Q ss_pred             cchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhc
Q 044888           82 PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ  120 (154)
Q Consensus        82 ~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~  120 (154)
                      ..++.++.+++.+||+.||++|||+.+|++.|+.+.+..
T Consensus       282 ~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~~  320 (322)
T 3soc_A          282 HAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLT  320 (322)
T ss_dssp             SHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            123455899999999999999999999999999988754

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.82  E-value=3.2e-20  Score=134.78  Aligned_cols=118  Identities=14%  Similarity=0.043  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc-----EEEecCCCcccCCCCcc-------eeeecccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV-----AKVSDLGLAKVGPNMLT-------LCCYQSGTLG   69 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~-----~kl~dfg~~~~~~~~~~-------~~~~~~g~~~   69 (154)
                      .++.++.|++.||.|||   ..+++|+||+|.||+++.++.     +||+|||++........       ......|+..
T Consensus       107 ~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~  183 (298)
T 1csn_A          107 TVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTAR  183 (298)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcc
Confidence            46789999999999999   566999999999999987765     99999999987654221       1223456777


Q ss_pred             cccCccccC------------------------CC---------------------------CcchHHHHHHHHHHhhcc
Q 044888           70 LVVDPFLRG------------------------KI---------------------------DPGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        70 ~~~~~~~~~------------------------~~---------------------------~~~~~~~~~~l~~~C~~~   98 (154)
                      +++||.+.+                        ++                           ...++.++.+++..||+.
T Consensus       184 y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  263 (298)
T 1csn_A          184 YMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNL  263 (298)
T ss_dssp             TCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHC
T ss_pred             cCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcC
Confidence            777766543                        11                           013466899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCC
Q 044888           99 RGCDRPQMGDVLCNLGLAWRQQGA  122 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~~~~~~  122 (154)
                      +|++||++.+|++.|+.+.+....
T Consensus       264 dp~~RP~~~~l~~~l~~~~~~~~~  287 (298)
T 1csn_A          264 AFDATPDYDYLQGLFSKVLERLNT  287 (298)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             CcccCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999876543

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=140.61  Aligned_cols=120  Identities=20%  Similarity=0.282  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ++++++.|++.||.|||+   .+++|+||||.||+++.++.+||+|||+++......  .......++..+++||.+.+ 
T Consensus       192 ~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  268 (382)
T 3tt0_A          192 DLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDR  268 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCC
Confidence            467899999999999994   569999999999999999999999999997654321  11111223333444443211 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ..+..++.++.+++..||+.+|++||++.+|++.|+
T Consensus       269 ~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~  348 (382)
T 3tt0_A          269 IYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD  348 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                                                        234456788999999999999999999999999999


Q ss_pred             HHHHhcCCCc
Q 044888          115 LAWRQQGAVD  124 (154)
Q Consensus       115 ~~~~~~~~~~  124 (154)
                      .+........
T Consensus       349 ~~~~~~~~~~  358 (382)
T 3tt0_A          349 RIVALTSNQE  358 (382)
T ss_dssp             HHHHHSCSCC
T ss_pred             HHHHHHhcCC
Confidence            9998766554

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.82  E-value=3.9e-20  Score=136.57  Aligned_cols=123  Identities=20%  Similarity=0.269  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCC------CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--------ceeeecccc
Q 044888            2 WRLKICIGAARGLHYLRTGT------RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--------TLCCYQSGT   67 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~------~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--------~~~~~~~g~   67 (154)
                      .+++++.|++.||.|||+..      ..+++|+||||.||+++.++.+||+|||++.......        .......|+
T Consensus       112 ~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt  191 (336)
T 3g2f_A          112 SSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGT  191 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCc
Confidence            35678999999999999541      1179999999999999999999999999997654311        011122355


Q ss_pred             cccccCccccC---------------------------------------------------------------------
Q 044888           68 LGLVVDPFLRG---------------------------------------------------------------------   78 (154)
Q Consensus        68 ~~~~~~~~~~~---------------------------------------------------------------------   78 (154)
                      ..|++||.+.+                                                                     
T Consensus       192 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (336)
T 3g2f_A          192 IRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQR  271 (336)
T ss_dssp             GGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC
T ss_pred             cceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccC
Confidence            55555554422                                                                     


Q ss_pred             -CC------CcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 044888           79 -KI------DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVD  124 (154)
Q Consensus        79 -~~------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~~~~~  124 (154)
                       ..      ...++..+.+|+.+||+.||++|||+.|+++.|+.+...-....
T Consensus       272 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          272 PKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK  324 (336)
T ss_dssp             CCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred             CCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence             00      01145579999999999999999999999999999987655443

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.82  E-value=2.1e-20  Score=137.60  Aligned_cols=114  Identities=37%  Similarity=0.543  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~----   76 (154)
                      .+..++.|++.||.|||+....+++|+||+|.||+++.++.+||+|||++........ ......|+..+++||.+    
T Consensus       132 ~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  211 (326)
T 3uim_A          132 KRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGK  211 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCC
Confidence            4678999999999999965334799999999999999999999999999976543211 11112244444444332    


Q ss_pred             ----------------------------------------------------------cCCCCcchHHHHHHHHHHhhcc
Q 044888           77 ----------------------------------------------------------RGKIDPGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        77 ----------------------------------------------------------~~~~~~~~~~~~~~l~~~C~~~   98 (154)
                                                                                .+..+...+..+.+++..||+.
T Consensus       212 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~  291 (326)
T 3uim_A          212 SSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQS  291 (326)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCS
T ss_pred             CCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCc
Confidence                                                                      1223345668899999999999


Q ss_pred             CCCCCCCHHHHHHHHHH
Q 044888           99 RGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~  115 (154)
                      ||.+|||+.+|++.|++
T Consensus       292 dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          292 SPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             CGGGSCCHHHHHHHHHT
T ss_pred             CCccCCCHHHHHHHhcC
Confidence            99999999999999986

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.82  E-value=8.5e-21  Score=142.82  Aligned_cols=115  Identities=22%  Similarity=0.306  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~~--   77 (154)
                      +.+.++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++.........  ....++..+++||.+.  
T Consensus       214 ~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  290 (377)
T 3cbl_A          214 TLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYG  290 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccC
Confidence            457889999999999995   559999999999999999999999999987643321100  0011122233333221  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 .+.+..++..+.+++..||+.||++|||+.+|++.|+
T Consensus       291 ~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~  370 (377)
T 3cbl_A          291 RYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQ  370 (377)
T ss_dssp             EEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence                                                       1334557889999999999999999999999999999


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      .+.+.
T Consensus       371 ~i~~~  375 (377)
T 3cbl_A          371 SIRKR  375 (377)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98764

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.82  E-value=9.1e-21  Score=142.61  Aligned_cols=117  Identities=23%  Similarity=0.315  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee---eecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC---CYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~~~~g~~~~~~~~~~~-   77 (154)
                      +++.++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++.........   ....++..+++||.+. 
T Consensus       148 ~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  224 (373)
T 2qol_A          148 QLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAY  224 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhcc
Confidence            467899999999999994   559999999999999999999999999987654321100   0011122333333221 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+..++..+.+++..||+.+|++||++.+|++.|
T Consensus       225 ~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L  304 (373)
T 2qol_A          225 RKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL  304 (373)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHH
Confidence                                                        123345678899999999999999999999999999


Q ss_pred             HHHHHhcC
Q 044888          114 GLAWRQQG  121 (154)
Q Consensus       114 ~~~~~~~~  121 (154)
                      +.+.....
T Consensus       305 ~~~~~~~~  312 (373)
T 2qol_A          305 DKLIRNPG  312 (373)
T ss_dssp             HHHHHCGG
T ss_pred             HHHHhCcc
Confidence            99987543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.82  E-value=1.2e-20  Score=137.20  Aligned_cols=115  Identities=23%  Similarity=0.300  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---eeeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---LCCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~g~~~~~~~~~~~-   77 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........   ......++..+++||.+. 
T Consensus       115 ~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  191 (295)
T 3ugc_A          115 KLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTE  191 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcC
Confidence            357889999999999994   5699999999999999999999999999976543211   111112223333333221 


Q ss_pred             -----------------------------------------------------------CCCCcchHHHHHHHHHHhhcc
Q 044888           78 -----------------------------------------------------------GKIDPGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        78 -----------------------------------------------------------~~~~~~~~~~~~~l~~~C~~~   98 (154)
                                                                                 .+.+..++.++.+++..||+.
T Consensus       192 ~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  271 (295)
T 3ugc_A          192 SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNN  271 (295)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCS
T ss_pred             CCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCC
Confidence                                                                       123445678899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHh
Q 044888           99 RGCDRPQMGDVLCNLGLAWRQ  119 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~~~  119 (154)
                      ||++||++.|+++.|+.+.+.
T Consensus       272 dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          272 NVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHC
T ss_pred             ChhhCCCHHHHHHHHHHHHHh
Confidence            999999999999999998753

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.82  E-value=1.2e-20  Score=139.24  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .++.++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.......  ......++..+++||.+.+ 
T Consensus       116 ~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  192 (325)
T 3kex_A          116 LLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFG  192 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccC
Confidence            467889999999999995   5599999999999999999999999999987643211  1111223333444333211 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ..+..++.++.+++.+||+.||.+||++.++++.|+
T Consensus       193 ~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~  272 (325)
T 3kex_A          193 KYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFT  272 (325)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred             CCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                                                        223345667889999999999999999999999999


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      .+...
T Consensus       273 ~~~~~  277 (325)
T 3kex_A          273 RMARD  277 (325)
T ss_dssp             HHTTS
T ss_pred             HHHhc
Confidence            88653

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.82  E-value=2e-20  Score=138.24  Aligned_cols=119  Identities=22%  Similarity=0.338  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~-   77 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||+++........   .....++..+++||.+. 
T Consensus       152 ~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  228 (325)
T 3kul_A          152 QLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAF  228 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcC
Confidence            467889999999999994   55999999999999999999999999999876432111   01111222333333221 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+..++..+.+++..||+.||++||++.+|++.|
T Consensus       229 ~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L  308 (325)
T 3kul_A          229 RTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVL  308 (325)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence                                                        123445778899999999999999999999999999


Q ss_pred             HHHHHhcCCC
Q 044888          114 GLAWRQQGAV  123 (154)
Q Consensus       114 ~~~~~~~~~~  123 (154)
                      +.+.+.....
T Consensus       309 ~~l~~~~~~~  318 (325)
T 3kul_A          309 DALIRSPESL  318 (325)
T ss_dssp             HHHHHSCC--
T ss_pred             HHHHhCcccc
Confidence            9998765543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.82  E-value=6.1e-20  Score=135.41  Aligned_cols=120  Identities=26%  Similarity=0.278  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCC-----CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce----eeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGT-----RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL----CCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~-----~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~----~~~~~g~~~~~~   72 (154)
                      +.+.++.|++.||.|||+..     ..+++|+||||.||+++.++.+||+|||++.........    .....|+..|++
T Consensus       135 ~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a  214 (337)
T 3mdy_A          135 SMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMP  214 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeC
Confidence            45788999999999999541     127999999999999999999999999998655332111    011234444444


Q ss_pred             CccccC------------------------------------------------------------------CCC-----
Q 044888           73 DPFLRG------------------------------------------------------------------KID-----   81 (154)
Q Consensus        73 ~~~~~~------------------------------------------------------------------~~~-----   81 (154)
                      ||.+.+                                                                  ..+     
T Consensus       215 PE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (337)
T 3mdy_A          215 PEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSS  294 (337)
T ss_dssp             HHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGG
T ss_pred             hhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchh
Confidence            443211                                                                  111     


Q ss_pred             cchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhcC
Q 044888           82 PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus        82 ~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~~  121 (154)
                      ..++.++.+++..||+.||.+||++.+|++.|+.+.+..+
T Consensus       295 ~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~  334 (337)
T 3mdy_A          295 DECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD  334 (337)
T ss_dssp             SHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcc
Confidence            1466789999999999999999999999999999987654

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.82  E-value=3.1e-20  Score=135.00  Aligned_cols=115  Identities=25%  Similarity=0.297  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCC-----CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce----eeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGT-----RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL----CCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~-----~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~----~~~~~g~~~~~~   72 (154)
                      .+++++.|++.||.|||+..     ..+++|+||||.||+++.++.+||+|||+++........    .....|+..+++
T Consensus       106 ~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a  185 (301)
T 3q4u_A          106 SCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMA  185 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeC
Confidence            46789999999999999321     345999999999999999999999999998654332111    111234455555


Q ss_pred             CccccCC------------------------------------------------------------------C-----C
Q 044888           73 DPFLRGK------------------------------------------------------------------I-----D   81 (154)
Q Consensus        73 ~~~~~~~------------------------------------------------------------------~-----~   81 (154)
                      ||.+.+.                                                                  .     +
T Consensus       186 PE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (301)
T 3q4u_A          186 PEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFS  265 (301)
T ss_dssp             HHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGG
T ss_pred             hhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhcc
Confidence            4433210                                                                  0     0


Q ss_pred             cchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 044888           82 PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        82 ~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~  116 (154)
                      ..++..+.+++..||+.||++|||+.+|++.|+.+
T Consensus       266 ~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          266 DPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             SHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            12457799999999999999999999999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.82  E-value=2.4e-20  Score=143.43  Aligned_cols=112  Identities=26%  Similarity=0.371  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      +++.++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++.......   ...++..+++||.+     
T Consensus       290 ~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~---~~~~~~~y~aPE~~~~~~~  363 (450)
T 1k9a_A          290 CLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---TGKLPVKWTAPEALREKKF  363 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCCTTTSCHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCccccccccc---CCCCCcceeCHHHhcCCCC
Confidence            357899999999999995   5599999999999999999999999999875432110   01122222222221     


Q ss_pred             ----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 044888           77 ----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        77 ----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~  116 (154)
                                                              +...+..++..+.+|+..||+.||++||++.+|++.|+.+
T Consensus       364 ~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i  443 (450)
T 1k9a_A          364 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHI  443 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                                                    1234556789999999999999999999999999999988


Q ss_pred             HHh
Q 044888          117 WRQ  119 (154)
Q Consensus       117 ~~~  119 (154)
                      ...
T Consensus       444 ~~~  446 (450)
T 1k9a_A          444 RTH  446 (450)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            764

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.82  E-value=7.9e-21  Score=146.20  Aligned_cols=116  Identities=22%  Similarity=0.314  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~----   76 (154)
                      ..++++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++...... +......++..+++||.+    
T Consensus       285 ~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  361 (454)
T 1qcf_A          285 KLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS  361 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCC
Confidence            356789999999999995   559999999999999999999999999998754310 000111122233333322    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               +.+.+..++.++.+|+.+||+.||++||++.+|+..|+.
T Consensus       362 ~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~  441 (454)
T 1qcf_A          362 FTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  441 (454)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHH
Confidence                                                     113345678899999999999999999999999999997


Q ss_pred             HHHhc
Q 044888          116 AWRQQ  120 (154)
Q Consensus       116 ~~~~~  120 (154)
                      +....
T Consensus       442 ~~~~~  446 (454)
T 1qcf_A          442 FYTAT  446 (454)
T ss_dssp             SSSSS
T ss_pred             HHhcc
Confidence            76543

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.81  E-value=8.3e-21  Score=140.23  Aligned_cols=115  Identities=22%  Similarity=0.316  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~--   77 (154)
                      .++.++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++........  .....++..|++||.+.  
T Consensus       118 ~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  194 (327)
T 3poz_A          118 YLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHR  194 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccC
Confidence            357899999999999995   55999999999999999999999999998765432110  11112222333333211  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++..+.+++.+||+.+|++||++.+|++.|+
T Consensus       195 ~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~  274 (327)
T 3poz_A          195 IYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFS  274 (327)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred             CCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence                                                       1334557788999999999999999999999999999


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      .+...
T Consensus       275 ~~~~~  279 (327)
T 3poz_A          275 KMARD  279 (327)
T ss_dssp             HHHTS
T ss_pred             HHHhh
Confidence            88753

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.81  E-value=9.4e-20  Score=133.49  Aligned_cols=120  Identities=21%  Similarity=0.360  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc-EEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV-AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~-~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ..++++.|++.||.|||+....+++|+||+|.||+++.++. +||+|||++.......   ....|+..+++||.+.+  
T Consensus       103 ~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~---~~~~gt~~y~aPE~~~~~~  179 (307)
T 2eva_A          103 HAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHM---TNNKGSAAWMAPEVFEGSN  179 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------------CCTTSSCHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccccc---ccCCCCCceEChhhhCCCC
Confidence            35678999999999999643367999999999999988776 7999999986553321   11234444555444322  


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ..+..++..+.+++.+||+.||++||++.++++.|+
T Consensus       180 ~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~  259 (307)
T 2eva_A          180 YSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMT  259 (307)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence                                                        122345678899999999999999999999999999


Q ss_pred             HHHHhcCCCc
Q 044888          115 LAWRQQGAVD  124 (154)
Q Consensus       115 ~~~~~~~~~~  124 (154)
                      .+.+.....+
T Consensus       260 ~~~~~~~~~~  269 (307)
T 2eva_A          260 HLMRYFPGAD  269 (307)
T ss_dssp             HHGGGCCCTT
T ss_pred             HHHHhccCCC
Confidence            9987665544

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.81  E-value=4.8e-20  Score=133.64  Aligned_cols=118  Identities=23%  Similarity=0.219  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe---cCCCcEEEecCCCcccCCCCcc-------eeeecccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKVGPNMLT-------LCCYQSGTLGLV   71 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill---~~~~~~kl~dfg~~~~~~~~~~-------~~~~~~g~~~~~   71 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||++   +.++.+||+|||++........       ......|+..++
T Consensus       106 ~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  182 (296)
T 4hgt_A          106 TVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYA  182 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCcccc
Confidence            467889999999999994   559999999999999   7888999999999976544211       112335666666


Q ss_pred             cCccccC------------------------CC----------------------C-----cchHHHHHHHHHHhhccCC
Q 044888           72 VDPFLRG------------------------KI----------------------D-----PGCFKTFTDIAKKCLADRG  100 (154)
Q Consensus        72 ~~~~~~~------------------------~~----------------------~-----~~~~~~~~~l~~~C~~~~p  100 (154)
                      +||.+.+                        ++                      +     ...+..+.+++..||+.+|
T Consensus       183 aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  262 (296)
T 4hgt_A          183 SINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRF  262 (296)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCT
T ss_pred             chHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCC
Confidence            6665433                        00                      0     2236789999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC
Q 044888          101 CDRPQMGDVLCNLGLAWRQQGA  122 (154)
Q Consensus       101 ~~RP~~~~v~~~L~~~~~~~~~  122 (154)
                      ++||++.+|++.|+.+.+....
T Consensus       263 ~~Rpt~~~l~~~l~~~~~~~~~  284 (296)
T 4hgt_A          263 DDKPDYSYLRQLFRNLFHRQGF  284 (296)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999886553

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.81  E-value=1.9e-20  Score=139.44  Aligned_cols=116  Identities=22%  Similarity=0.272  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~--   77 (154)
                      ..+.++.|++.||.|||+   .+++|+||||.||+++.++.+||+|||++.......  .......|+..+++||.+.  
T Consensus       194 ~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  270 (359)
T 3vhe_A          194 HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR  270 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCC
Confidence            357789999999999995   559999999999999999999999999997653321  1111222333444444221  


Q ss_pred             ---------------------C-----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 ---------------------G-----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 ---------------------~-----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                           +                       ..+..++.++.+++..||+.||.+||++.||++.|
T Consensus       271 ~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  350 (359)
T 3vhe_A          271 VYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  350 (359)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence                                 1                       22334567899999999999999999999999999


Q ss_pred             HHHHHhc
Q 044888          114 GLAWRQQ  120 (154)
Q Consensus       114 ~~~~~~~  120 (154)
                      +.+.+..
T Consensus       351 ~~~~~~~  357 (359)
T 3vhe_A          351 GNLLQAN  357 (359)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988643

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.81  E-value=6.5e-20  Score=133.04  Aligned_cols=119  Identities=23%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe---cCCCcEEEecCCCcccCCCCcc-------eeeecccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKVGPNMLT-------LCCYQSGTLGLV   71 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill---~~~~~~kl~dfg~~~~~~~~~~-------~~~~~~g~~~~~   71 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||++   +.++.+||+|||++........       ......|+..++
T Consensus       106 ~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  182 (296)
T 3uzp_A          106 TVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYA  182 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccC
Confidence            467899999999999994   559999999999999   4788999999999976544221       112335666666


Q ss_pred             cCccccC------------------------CC----------------------C-----cchHHHHHHHHHHhhccCC
Q 044888           72 VDPFLRG------------------------KI----------------------D-----PGCFKTFTDIAKKCLADRG  100 (154)
Q Consensus        72 ~~~~~~~------------------------~~----------------------~-----~~~~~~~~~l~~~C~~~~p  100 (154)
                      +||.+.+                        ++                      +     ...+.++.+++..||+.||
T Consensus       183 aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  262 (296)
T 3uzp_A          183 SINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRF  262 (296)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCT
T ss_pred             ChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCc
Confidence            6665533                        00                      0     2346789999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCC
Q 044888          101 CDRPQMGDVLCNLGLAWRQQGAV  123 (154)
Q Consensus       101 ~~RP~~~~v~~~L~~~~~~~~~~  123 (154)
                      ++||++.+|++.|+.+.......
T Consensus       263 ~~Rps~~~l~~~l~~~~~~~~~~  285 (296)
T 3uzp_A          263 DDKPDYSYLRQLFRNLFHRQGFS  285 (296)
T ss_dssp             TCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             CcCCCHHHHHHHHHHHHHhcCCc
Confidence            99999999999999998876544

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.81  E-value=1.5e-19  Score=132.92  Aligned_cols=118  Identities=54%  Similarity=0.837  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPF----   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~----   75 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........  ......|+..+++||.    
T Consensus       140 ~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  216 (321)
T 2qkw_B          140 QRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKG  216 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCC
Confidence            467899999999999994   5699999999999999999999999999875432100  0001112222222221    


Q ss_pred             --------------------------------------------------------ccCCCCcchHHHHHHHHHHhhccC
Q 044888           76 --------------------------------------------------------LRGKIDPGCFKTFTDIAKKCLADR   99 (154)
Q Consensus        76 --------------------------------------------------------~~~~~~~~~~~~~~~l~~~C~~~~   99 (154)
                                                                              +....++.++..+.+++.+||+.|
T Consensus       217 ~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  296 (321)
T 2qkw_B          217 RLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALS  296 (321)
T ss_dssp             BCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSS
T ss_pred             CCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCC
Confidence                                                                    222334567888999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCC
Q 044888          100 GCDRPQMGDVLCNLGLAWRQQGA  122 (154)
Q Consensus       100 p~~RP~~~~v~~~L~~~~~~~~~  122 (154)
                      |++||++.+|++.|+.+.+..+.
T Consensus       297 P~~Rps~~ell~~L~~~l~~~~~  319 (321)
T 2qkw_B          297 SEDRPSMGDVLWKLEYALRLQES  319 (321)
T ss_dssp             GGGSCCHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHHHHHHHhhcccC
Confidence            99999999999999999887654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.81  E-value=1.1e-19  Score=131.98  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc----ceeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML----TLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~----~~~~~~~g~~~~~~~~~~~   77 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.......    .......++..+++||.+.
T Consensus       125 ~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  201 (298)
T 3pls_A          125 DLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQ  201 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhc
Confidence            457889999999999994   559999999999999999999999999997543311    0111112233333333221


Q ss_pred             C---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 G---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ~---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      +                                             ..+..++..+.+++..||+.||.+|||+.++++.
T Consensus       202 ~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  281 (298)
T 3pls_A          202 TYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGE  281 (298)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            1                                             2334467789999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 044888          113 LGLAWRQQG  121 (154)
Q Consensus       113 L~~~~~~~~  121 (154)
                      |+.+.+...
T Consensus       282 l~~~~~~l~  290 (298)
T 3pls_A          282 VEQIVSALL  290 (298)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHHh
Confidence            999987654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.81  E-value=3.6e-20  Score=134.83  Aligned_cols=113  Identities=19%  Similarity=0.317  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---eeeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---LCCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~g~~~~~~~~~~~-   77 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.++|+|||++........   ......++..+++||.+. 
T Consensus       127 ~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  203 (302)
T 4e5w_A          127 QQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQ  203 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecC
Confidence            467889999999999994   5699999999999999999999999999976644211   111122333344433221 


Q ss_pred             ----------------------------------------------------------CCCCcchHHHHHHHHHHhhccC
Q 044888           78 ----------------------------------------------------------GKIDPGCFKTFTDIAKKCLADR   99 (154)
Q Consensus        78 ----------------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~   99 (154)
                                                                                ...+..++..+.+++.+||+.|
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  283 (302)
T 4e5w_A          204 SKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQ  283 (302)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSS
T ss_pred             CCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence                                                                      1233456778999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 044888          100 GCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus       100 p~~RP~~~~v~~~L~~~~  117 (154)
                      |.+||++.++++.|+.+.
T Consensus       284 p~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          284 PSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             GGGSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999999875

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.80  E-value=3.1e-20  Score=140.95  Aligned_cols=106  Identities=22%  Similarity=0.244  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC----cceeeecccccccccCccccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM----LTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ...++.|++.||.|||   ..+|+||||||.|||++.++.+|++|||+++.+...    ........|+..|++||.+.+
T Consensus       160 ~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~  236 (398)
T 4b99_A          160 VRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLS  236 (398)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcC
Confidence            3568999999999999   456999999999999999999999999999876432    112234578999999987644


Q ss_pred             C-------------------------CC--------------------------------------------------cc
Q 044888           79 K-------------------------ID--------------------------------------------------PG   83 (154)
Q Consensus        79 ~-------------------------~~--------------------------------------------------~~   83 (154)
                      .                         ++                                                  +.
T Consensus       237 ~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (398)
T 4b99_A          237 LHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPG  316 (398)
T ss_dssp             CSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTT
T ss_pred             CCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCC
Confidence            1                         10                                                  01


Q ss_pred             hHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           84 CFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        84 ~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+.++.+|+.+||+.||++|||+.|+++
T Consensus       317 ~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          317 ADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             CCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            2456788999999999999999999875

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.80  E-value=5e-20  Score=135.43  Aligned_cols=118  Identities=21%  Similarity=0.284  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--   77 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||+++.......  ......++..+++||.+.  
T Consensus       138 ~~~~i~~qi~~al~~LH~---~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  214 (323)
T 3qup_A          138 TLVRFMVDIACGMEYLSS---RNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADN  214 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHc---CCcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCC
Confidence            457889999999999995   5599999999999999999999999999876533110  000111122222222111  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+...+..+.+++.+||+.||++||++.++++.|+
T Consensus       215 ~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~  294 (323)
T 3qup_A          215 LYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELE  294 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence                                                       1334566789999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 044888          115 LAWRQQGA  122 (154)
Q Consensus       115 ~~~~~~~~  122 (154)
                      .+......
T Consensus       295 ~~l~~~~~  302 (323)
T 3qup_A          295 NILGHLSV  302 (323)
T ss_dssp             HHHHC---
T ss_pred             HHHHHhhh
Confidence            99875543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.80  E-value=4.5e-20  Score=138.92  Aligned_cols=117  Identities=19%  Similarity=0.261  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc----eeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT----LCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~g~~~~~~~~~~~   77 (154)
                      ..+.++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++.......    ......++..+++||.+.
T Consensus       193 ~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  269 (373)
T 3c1x_A          193 DLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ  269 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhc
Confidence            356789999999999994   5599999999999999999999999999975432110    001112223333333221


Q ss_pred             ---------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 ---------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ---------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                   ...+..++..+.+++..||+.+|++||++.++++.
T Consensus       270 ~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          270 TQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                         12234577899999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 044888          113 LGLAWRQQG  121 (154)
Q Consensus       113 L~~~~~~~~  121 (154)
                      |+.+.....
T Consensus       350 L~~i~~~~~  358 (373)
T 3c1x_A          350 ISAIFSTFI  358 (373)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHhcc
Confidence            999887544

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.80  E-value=6.4e-20  Score=133.89  Aligned_cols=107  Identities=23%  Similarity=0.294  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+   
T Consensus       117 ~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  193 (297)
T 3fxz_A          117 QIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY  193 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCB
T ss_pred             HHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCC
Confidence            356789999999999995   56999999999999999999999999998776554333344556777777765532   


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 ..+...+..+.+++.+||+.||++||++.|+++
T Consensus       194 ~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          194 GPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence                                                       112345677899999999999999999999975

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.80  E-value=2.7e-20  Score=143.23  Aligned_cols=117  Identities=23%  Similarity=0.314  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~----   76 (154)
                      +.+.++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++...... +......++..+++||.+    
T Consensus       281 ~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  357 (452)
T 1fmk_A          281 QLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR  357 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCC
Confidence            457889999999999994   559999999999999999999999999997654311 111111122233333321    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               +.+.+..++..+.+++..||+.||++|||+.+|++.|+.
T Consensus       358 ~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~  437 (452)
T 1fmk_A          358 FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED  437 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence                                                     113345678899999999999999999999999999998


Q ss_pred             HHHhcC
Q 044888          116 AWRQQG  121 (154)
Q Consensus       116 ~~~~~~  121 (154)
                      +.....
T Consensus       438 ~~~~~~  443 (452)
T 1fmk_A          438 YFTSTE  443 (452)
T ss_dssp             TTSCSC
T ss_pred             HhccCC
Confidence            765443

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.80  E-value=2.5e-20  Score=137.78  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~---   76 (154)
                      ..+.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||+++.......  ......++..+++||.+   
T Consensus       118 ~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  194 (327)
T 3lzb_A          118 YLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHR  194 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCC
Confidence            357889999999999994   5599999999999999999999999999976543211  00111122223333221   


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ....+..++.++.+++..||+.||.+||++.|+++.|+
T Consensus       195 ~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~  274 (327)
T 3lzb_A          195 IYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFS  274 (327)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence                                                      11234457788999999999999999999999999999


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      .+...
T Consensus       275 ~~~~~  279 (327)
T 3lzb_A          275 KMARD  279 (327)
T ss_dssp             HHHTS
T ss_pred             HHHhC
Confidence            98754

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.80  E-value=7.7e-20  Score=133.64  Aligned_cols=115  Identities=19%  Similarity=0.240  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~--   77 (154)
                      ..++++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........  .....++..+++||.+.  
T Consensus       151 ~~~~i~~qi~~~l~~lH~---~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  227 (314)
T 2ivs_A          151 DLISFAWQISQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDH  227 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCC
Confidence            357889999999999994   55999999999999999999999999998765432110  01111222233332211  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++..+.+++..||+.||++||++.+|++.|+
T Consensus       228 ~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~  307 (314)
T 2ivs_A          228 IYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLE  307 (314)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence                                                       1233456788999999999999999999999999999


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      .+...
T Consensus       308 ~~~~~  312 (314)
T 2ivs_A          308 KMMVK  312 (314)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            98764

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.80  E-value=3.9e-20  Score=133.68  Aligned_cols=115  Identities=20%  Similarity=0.322  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~----   76 (154)
                      ..+.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........ ......++..+++||.+    
T Consensus       117 ~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  193 (281)
T 1mp8_A          117 SLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRR  193 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCC
Confidence            356789999999999994   5699999999999999999999999999876543110 00001111122222211    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ....+..++..+.+++..||+.||++||++.++++.|+.
T Consensus       194 ~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~  273 (281)
T 1mp8_A          194 FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLST  273 (281)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence                                                     112345678889999999999999999999999999999


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       274 ~~~~  277 (281)
T 1mp8_A          274 ILEE  277 (281)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.80  E-value=8.4e-20  Score=145.25  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---eeeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---LCCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~g~~~~~~~~~~~-   77 (154)
                      +++.++.|++.||.|||+   .+++||||++.||+++.++.+||+|||+++.......   ......+++.|++||.+. 
T Consensus       437 ~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~  513 (613)
T 2ozo_A          437 NVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF  513 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcC
Confidence            467899999999999995   5599999999999999999999999999987643211   011111223333333221 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+..++.++.+|+..||+.+|++||++.+|++.|
T Consensus       514 ~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L  593 (613)
T 2ozo_A          514 RKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  593 (613)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence                                                        133456789999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 044888          114 GLAWRQQG  121 (154)
Q Consensus       114 ~~~~~~~~  121 (154)
                      +.+.....
T Consensus       594 ~~~~~~~~  601 (613)
T 2ozo_A          594 RACYYSLA  601 (613)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            99876543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.80  E-value=2.2e-19  Score=129.87  Aligned_cols=109  Identities=23%  Similarity=0.404  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCC--cEeecCCCCcEEecCCCc-----EEEecCCCcccCCCCcceeeecccccccccCc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNI--IIHRDVKSTNILLDENWV-----AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDP   74 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~--i~h~dl~~~nill~~~~~-----~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~   74 (154)
                      .++.++.|++.||.|||   ..+  ++|+||+|.||+++.++.     +||+|||+++.....   .....|+..+++||
T Consensus       123 ~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~g~~~y~aPE  196 (287)
T 4f0f_A          123 VKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS---VSGLLGNFQWMAPE  196 (287)
T ss_dssp             HHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSC---EECCCCCCTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCcccccccc---ccccCCCccccCch
Confidence            45788999999999999   555  999999999999987766     999999998755432   22234566666666


Q ss_pred             cccC-------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC
Q 044888           75 FLRG-------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ  105 (154)
Q Consensus        75 ~~~~-------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~  105 (154)
                      .+.+                                                 ..+..++..+.+++..||+.||++||+
T Consensus       197 ~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  276 (287)
T 4f0f_A          197 TIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPH  276 (287)
T ss_dssp             GSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             hhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcC
Confidence            5521                                                 223456778999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 044888          106 MGDVLCNLGLA  116 (154)
Q Consensus       106 ~~~v~~~L~~~  116 (154)
                      +.++++.|+++
T Consensus       277 ~~~ll~~L~~l  287 (287)
T 4f0f_A          277 FSYIVKELSEL  287 (287)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999999853

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.80  E-value=2.5e-19  Score=130.72  Aligned_cols=113  Identities=36%  Similarity=0.554  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+|++|||++........  ......|+..+++||.+.+ 
T Consensus       134 ~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  210 (307)
T 2nru_A          134 MRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGE  210 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTE
T ss_pred             HHHHHHHHHHHHHHHHhc---CCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCC
Confidence            357889999999999994   5699999999999999999999999999876543211  1111234444444443322 


Q ss_pred             --------------------------------------------------------CCCcchHHHHHHHHHHhhccCCCC
Q 044888           79 --------------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCD  102 (154)
Q Consensus        79 --------------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~  102 (154)
                                                                              ..+...+..+.+++..||+.+|.+
T Consensus       211 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  290 (307)
T 2nru_A          211 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNK  290 (307)
T ss_dssp             ECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTT
T ss_pred             CCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCccc
Confidence                                                                    112345677899999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 044888          103 RPQMGDVLCNLGLAW  117 (154)
Q Consensus       103 RP~~~~v~~~L~~~~  117 (154)
                      ||++.+|++.|+.+.
T Consensus       291 Rps~~~l~~~L~~l~  305 (307)
T 2nru_A          291 RPDIKKVQQLLQEMT  305 (307)
T ss_dssp             SCCHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999999864

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.80  E-value=1.3e-19  Score=134.15  Aligned_cols=119  Identities=23%  Similarity=0.334  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~-   77 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........   .....++..+++||.+. 
T Consensus       148 ~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  224 (333)
T 1mqb_A          148 QLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISY  224 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhccc
Confidence            467889999999999994   55999999999999999999999999998765432110   00011122233222211 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+..++..+.+++.+||+.+|++||++.+|++.|
T Consensus       225 ~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L  304 (333)
T 1mqb_A          225 RKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL  304 (333)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                                                        123345678899999999999999999999999999


Q ss_pred             HHHHHhcCCC
Q 044888          114 GLAWRQQGAV  123 (154)
Q Consensus       114 ~~~~~~~~~~  123 (154)
                      +.+.......
T Consensus       305 ~~~~~~~~~~  314 (333)
T 1mqb_A          305 DKLIRAPDSL  314 (333)
T ss_dssp             HHHHHSGGGG
T ss_pred             HHHHhcchhh
Confidence            9988755443

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.80  E-value=3.2e-20  Score=144.31  Aligned_cols=114  Identities=21%  Similarity=0.336  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~----   76 (154)
                      .++.++.|++.||.|||+   .+++||||++.||+++.++.+||+|||+++...... +......+++.+++||.+    
T Consensus       319 ~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  395 (495)
T 1opk_A          319 VLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK  395 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCC
Confidence            357889999999999994   559999999999999999999999999998754321 101111122233333321    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               +...+..++..+.+|+..||+.||++||++.+|++.|+.
T Consensus       396 ~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~  475 (495)
T 1opk_A          396 FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFET  475 (495)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHH
Confidence                                                     113345678899999999999999999999999999987


Q ss_pred             HHH
Q 044888          116 AWR  118 (154)
Q Consensus       116 ~~~  118 (154)
                      +..
T Consensus       476 ~~~  478 (495)
T 1opk_A          476 MFQ  478 (495)
T ss_dssp             SCS
T ss_pred             HHh
Confidence            653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.80  E-value=1.3e-19  Score=132.73  Aligned_cols=116  Identities=22%  Similarity=0.266  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFL---   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~---   76 (154)
                      ..+.++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++........  ......++..+++||.+   
T Consensus       148 ~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  224 (313)
T 3brb_A          148 TLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADR  224 (313)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCC
Confidence            45788999999999999   55699999999999999999999999999876532110  00011112222222211   


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ....+..++..+.+++..||+.+|.+||++.++++.|+
T Consensus       225 ~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~  304 (313)
T 3brb_A          225 VYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLE  304 (313)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             CccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                                                      11233456788999999999999999999999999999


Q ss_pred             HHHHhc
Q 044888          115 LAWRQQ  120 (154)
Q Consensus       115 ~~~~~~  120 (154)
                      .+.+..
T Consensus       305 ~l~~~l  310 (313)
T 3brb_A          305 KLLESL  310 (313)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            988754

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.80  E-value=2.1e-19  Score=130.80  Aligned_cols=107  Identities=21%  Similarity=0.281  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+.  
T Consensus       138 ~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  214 (298)
T 2zv2_A          138 QARFYFQDLIKGIEYLHY---QKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRK  214 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCC
Confidence            356789999999999995   559999999999999999999999999998765433223334567777777765320  


Q ss_pred             ----------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 ----------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 ----------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                    .....+..+.+++.+||+.||++||++.|+++
T Consensus       215 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          215 IFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             CEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence                                                          11245678999999999999999999999874

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.79  E-value=1.3e-19  Score=131.79  Aligned_cols=117  Identities=20%  Similarity=0.279  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc----eeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT----LCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~g~~~~~~~~~~~   77 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+|++|||++........    ......++..+++||.+.
T Consensus       129 ~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  205 (298)
T 3f66_A          129 DLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ  205 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhc
Confidence            357789999999999994   5599999999999999999999999999976543211    111112233343333221


Q ss_pred             C---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 G---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ~---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      +                                             ..+..++..+.+++..||+.+|++||++.++++.
T Consensus       206 ~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  285 (298)
T 3f66_A          206 TQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  285 (298)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            1                                             1234467889999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 044888          113 LGLAWRQQG  121 (154)
Q Consensus       113 L~~~~~~~~  121 (154)
                      |+.+.....
T Consensus       286 L~~~~~~~~  294 (298)
T 3f66_A          286 ISAIFSTFI  294 (298)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHhhc
Confidence            999887443

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.79  E-value=1.4e-19  Score=133.17  Aligned_cols=119  Identities=20%  Similarity=0.213  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCC--cEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc------------eeeecccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNI--IIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT------------LCCYQSGT   67 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~--i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~------------~~~~~~g~   67 (154)
                      ..+.++.|++.||.|||   ..+  ++|+||+|.||+++.++.+||+|||++........            ......|+
T Consensus       137 ~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  213 (337)
T 3ll6_A          137 TVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTT  213 (337)
T ss_dssp             HHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC---------------------
T ss_pred             HHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCC
Confidence            46788999999999999   455  99999999999999999999999999987654211            11123466


Q ss_pred             cccccCcccc---C-----------------------------------------CCCcchHHHHHHHHHHhhccCCCCC
Q 044888           68 LGLVVDPFLR---G-----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDR  103 (154)
Q Consensus        68 ~~~~~~~~~~---~-----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~R  103 (154)
                      ..+++||.+.   +                                         ......+..+.+|+..||+.||++|
T Consensus       214 ~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  293 (337)
T 3ll6_A          214 PMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEER  293 (337)
T ss_dssp             ----------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------------CCCCTTCCSSGGGHHHHHHHSCSSGGGS
T ss_pred             CCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhcCcccCCcccccchHHHHHHHHHccCChhhC
Confidence            6677777652   1                                         1112334567899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCC
Q 044888          104 PQMGDVLCNLGLAWRQQGAV  123 (154)
Q Consensus       104 P~~~~v~~~L~~~~~~~~~~  123 (154)
                      |++.|+++.|+.+.......
T Consensus       294 ps~~e~l~~l~~~~~~~~~~  313 (337)
T 3ll6_A          294 LSIAEVVHQLQEIAAARNVN  313 (337)
T ss_dssp             CCHHHHHHHHHHHHHHTTCC
T ss_pred             cCHHHHHHHHHHHHhccCCC
Confidence            99999999999998765544

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.79  E-value=2e-19  Score=132.83  Aligned_cols=117  Identities=18%  Similarity=0.105  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc-----EEEecCCCcccCCCCcc-------eeeecccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV-----AKVSDLGLAKVGPNMLT-------LCCYQSGTLG   69 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~-----~kl~dfg~~~~~~~~~~-------~~~~~~g~~~   69 (154)
                      .++.++.|++.||.|||+   .+++||||+|.||+++.++.     +||+|||+++......+       ......|+..
T Consensus       106 ~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~  182 (330)
T 2izr_A          106 TVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTAR  182 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCcc
Confidence            467899999999999994   56999999999999998877     99999999987543221       1134467777


Q ss_pred             cccCccccC------------------------CCC---------------------------cchHHHHHHHHHHhhcc
Q 044888           70 LVVDPFLRG------------------------KID---------------------------PGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        70 ~~~~~~~~~------------------------~~~---------------------------~~~~~~~~~l~~~C~~~   98 (154)
                      |++||.+.+                        ++.                           ...+ ++.+++..||+.
T Consensus       183 y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~l~~  261 (330)
T 2izr_A          183 YMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRL  261 (330)
T ss_dssp             TCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHHHHC
T ss_pred             ccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh-HHHHHHHHHHhC
Confidence            877776543                        110                           0134 889999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCC
Q 044888           99 RGCDRPQMGDVLCNLGLAWRQQGA  122 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~~~~~~  122 (154)
                      +|.+||++.+|++.|+.+.+....
T Consensus       262 ~p~~RP~~~~l~~~l~~~~~~~~~  285 (330)
T 2izr_A          262 DFFEKPDYDYLRKLFTDLFDRKGY  285 (330)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHcCC
Confidence            999999999999999998876543

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.79  E-value=7.6e-20  Score=132.71  Aligned_cols=114  Identities=30%  Similarity=0.477  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC--cceeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTLCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~--~~~~~~~~g~~~~~~~~~~~--   77 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++......  ........|+..+++||.+.  
T Consensus       121 ~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  197 (289)
T 3og7_A          121 KLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQ  197 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhccc
Confidence            457889999999999994   55999999999999999999999999998754321  11111223455555555432  


Q ss_pred             -C-------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           78 -G-------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        78 -~-------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                       +                                                 .....++..+.+++..||+.+|++||++.
T Consensus       198 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  277 (289)
T 3og7_A          198 DSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFP  277 (289)
T ss_dssp             --CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHH
Confidence             0                                                 11225678899999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 044888          108 DVLCNLGLAWR  118 (154)
Q Consensus       108 ~v~~~L~~~~~  118 (154)
                      ++++.|+.+.+
T Consensus       278 ell~~L~~l~~  288 (289)
T 3og7_A          278 RILAEIEELAR  288 (289)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhh
Confidence            99999998653

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.79  E-value=1.4e-19  Score=133.80  Aligned_cols=118  Identities=22%  Similarity=0.275  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--   77 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........  ......++..+++||.+.  
T Consensus       158 ~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  234 (334)
T 2pvf_A          158 DLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDR  234 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCC
Confidence            357789999999999994   5699999999999999999999999999876543211  011112223333333221  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++..+.+++..||+.+|.+||++.++++.|+
T Consensus       235 ~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~  314 (334)
T 2pvf_A          235 VYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD  314 (334)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence                                                       1233456788999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 044888          115 LAWRQQGA  122 (154)
Q Consensus       115 ~~~~~~~~  122 (154)
                      .+......
T Consensus       315 ~l~~~~~~  322 (334)
T 2pvf_A          315 RILTLTTN  322 (334)
T ss_dssp             HHHHHHC-
T ss_pred             HHHhcccc
Confidence            99886554

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.79  E-value=7.4e-20  Score=134.26  Aligned_cols=106  Identities=20%  Similarity=0.151  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKI-   80 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-   80 (154)
                      .+..++.|++.||.|||+   .+++|+||||.||+++.++.+||+|||++....... ......|+..+++||.+.+.+ 
T Consensus       158 ~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~  233 (311)
T 3p1a_A          158 QVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG-AGEVQEGDPRYMAPELLQGSYG  233 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCTTCEECC-------CCCCCGGGCCGGGGGTCCS
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccceeeeecccCC-CCcccCCCccccCHhHhcCCCC
Confidence            467899999999999995   459999999999999999999999999987764422 222345778888888765411 


Q ss_pred             ----------------------------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           81 ----------------------------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        81 ----------------------------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              +...+.++.+++.+||+.||++||++.|+++
T Consensus       234 ~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          234 TAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             THHHHHHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                                                    1124577889999999999999999999985

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.79  E-value=1.5e-19  Score=140.21  Aligned_cols=117  Identities=20%  Similarity=0.208  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe---cCCCcEEEecCCCcccCCCCcce-------eeecccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKVGPNMLTL-------CCYQSGTLGLV   71 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill---~~~~~~kl~dfg~~~~~~~~~~~-------~~~~~g~~~~~   71 (154)
                      +++.|+.|++.||.|||+   .+++|||||+.|||+   +.++.+||+|||+++........       .....|+..|+
T Consensus       104 ~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~  180 (483)
T 3sv0_A          104 TVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYA  180 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCcccc
Confidence            467899999999999994   569999999999999   57889999999999876543211       11345666777


Q ss_pred             cCccccC----------------------CCC-----------------------------cchHHHHHHHHHHhhccCC
Q 044888           72 VDPFLRG----------------------KID-----------------------------PGCFKTFTDIAKKCLADRG  100 (154)
Q Consensus        72 ~~~~~~~----------------------~~~-----------------------------~~~~~~~~~l~~~C~~~~p  100 (154)
                      +||.+.+                      ..+                             ..++.++.+|+..||+.+|
T Consensus       181 aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP  260 (483)
T 3sv0_A          181 SVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRF  260 (483)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCT
T ss_pred             CHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCCh
Confidence            7665543                      111                             2345688999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhcC
Q 044888          101 CDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus       101 ~~RP~~~~v~~~L~~~~~~~~  121 (154)
                      ++||++.+|++.|+.+.....
T Consensus       261 ~~RPs~~el~~~L~~l~~~~~  281 (483)
T 3sv0_A          261 DDKPDYSYLKRLFRDLFIREG  281 (483)
T ss_dssp             TCCCCHHHHHHHHHHHHHHTT
T ss_pred             hhCcCHHHHHHHHHHHHHHcC
Confidence            999999999999999877543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.79  E-value=6.7e-20  Score=131.58  Aligned_cols=115  Identities=23%  Similarity=0.298  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---   77 (154)
                      ..+.++.|++.||.|||+   .+++|+||+|.||+++.++.+|++|||++........ ......++..+++||.+.   
T Consensus       107 ~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  183 (269)
T 4hcu_A          107 TLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR  183 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCC
Confidence            357789999999999994   5599999999999999999999999999876543210 011111222233333221   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+...+..+.+++..||+.+|++||++.++++.|+.
T Consensus       184 ~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~  263 (269)
T 4hcu_A          184 YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAE  263 (269)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHH
Confidence                                                      12233457789999999999999999999999999999


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       264 l~~~  267 (269)
T 4hcu_A          264 IAES  267 (269)
T ss_dssp             HHHC
T ss_pred             HHHc
Confidence            8764

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.79  E-value=7.9e-20  Score=134.74  Aligned_cols=120  Identities=23%  Similarity=0.349  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~   78 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........   .....++..+++||.+.+
T Consensus       128 ~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  204 (327)
T 3lxl_A          128 RLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSD  204 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhcc
Confidence            467889999999999994   56999999999999999999999999999866432111   111223333444443211


Q ss_pred             -----------------------------------------------------------CCCcchHHHHHHHHHHhhccC
Q 044888           79 -----------------------------------------------------------KIDPGCFKTFTDIAKKCLADR   99 (154)
Q Consensus        79 -----------------------------------------------------------~~~~~~~~~~~~l~~~C~~~~   99 (154)
                                                                                 ..+..++..+.+++..||+.|
T Consensus       205 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  284 (327)
T 3lxl_A          205 NIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPS  284 (327)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             CCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcCCC
Confidence                                                                       233456678999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCc
Q 044888          100 GCDRPQMGDVLCNLGLAWRQQGAVD  124 (154)
Q Consensus       100 p~~RP~~~~v~~~L~~~~~~~~~~~  124 (154)
                      |++||++.++++.|+.+........
T Consensus       285 P~~Rps~~ell~~L~~~~~~~~~~~  309 (327)
T 3lxl_A          285 PQDRPSFSALGPQLDMLWSGSRGCE  309 (327)
T ss_dssp             GGGSCCHHHHHHHHHHC--------
T ss_pred             hhhCcCHHHHHHHHHHHHhhhcCcc
Confidence            9999999999999999877555443

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.79  E-value=1.3e-19  Score=133.31  Aligned_cols=117  Identities=22%  Similarity=0.298  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~-   77 (154)
                      .++.++.|++.||.|||+   .+++|+||++.||+++.++.+||+|||++.........   .....++..+++||.+. 
T Consensus       135 ~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  211 (318)
T 3lxp_A          135 QLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKE  211 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcC
Confidence            467889999999999995   55999999999999999999999999999776542110   11112233333333221 


Q ss_pred             ----------------------------------------------------------CCCCcchHHHHHHHHHHhhccC
Q 044888           78 ----------------------------------------------------------GKIDPGCFKTFTDIAKKCLADR   99 (154)
Q Consensus        78 ----------------------------------------------------------~~~~~~~~~~~~~l~~~C~~~~   99 (154)
                                                                                ...+..++..+.+|+..||+.|
T Consensus       212 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  291 (318)
T 3lxp_A          212 YKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETE  291 (318)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCC
Confidence                                                                      1233456788999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcC
Q 044888          100 GCDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus       100 p~~RP~~~~v~~~L~~~~~~~~  121 (154)
                      |++||++.++++.|+.+.+...
T Consensus       292 P~~Rps~~ell~~L~~l~~~~~  313 (318)
T 3lxp_A          292 ASFRPTFENLIPILKTVHEKYQ  313 (318)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHHH
T ss_pred             cccCcCHHHHHHHHHHHHHhhc
Confidence            9999999999999999876544

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.79  E-value=1.8e-19  Score=131.73  Aligned_cols=119  Identities=17%  Similarity=0.190  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ..++++.|++.||.|||+   .+++|+||++.||+++.++.+||+|||++..............|+..+++||.+.+   
T Consensus       137 ~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  213 (310)
T 2wqm_A          137 TVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGY  213 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCC
Confidence            356789999999999994   56999999999999999999999999998765432221112233444444443221   


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  ......+.++.+++..||+.||++||++.+|++.|+
T Consensus       214 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~  293 (310)
T 2wqm_A          214 NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAK  293 (310)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence                                                        011345778999999999999999999999999999


Q ss_pred             HHHHhcCCC
Q 044888          115 LAWRQQGAV  123 (154)
Q Consensus       115 ~~~~~~~~~  123 (154)
                      ++......+
T Consensus       294 ~l~~~~~~~  302 (310)
T 2wqm_A          294 RMHACTASS  302 (310)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHhhhhh
Confidence            998766554

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.79  E-value=1.1e-19  Score=131.16  Aligned_cols=115  Identities=21%  Similarity=0.254  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~~---   77 (154)
                      +.+.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++....... .......++..+++||.+.   
T Consensus       121 ~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  197 (283)
T 3gen_A          121 QLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSK  197 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCC
Confidence            467889999999999994   569999999999999999999999999987653310 0001111122222222211   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+...+..+.+++..||+.+|++||++.++++.|+.
T Consensus       198 ~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~  277 (283)
T 3gen_A          198 FSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILD  277 (283)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHH
Confidence                                                      12334457789999999999999999999999999999


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       278 ~~~~  281 (283)
T 3gen_A          278 VMDE  281 (283)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            8764

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.79  E-value=1.4e-19  Score=129.74  Aligned_cols=115  Identities=20%  Similarity=0.297  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---   77 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.++|+|||++........ ......++..+++||.+.   
T Consensus       105 ~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  181 (268)
T 3sxs_A          105 QLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFK  181 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSE
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccC
Confidence            457889999999999994   5699999999999999999999999999876544211 111112222333333221   


Q ss_pred             --------------------C----------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 --------------------G----------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 --------------------~----------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                          +                      ..+...+..+.+++..||+.+|++||++.++++.|+.
T Consensus       182 ~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~  261 (268)
T 3sxs_A          182 YSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEP  261 (268)
T ss_dssp             EETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGG
T ss_pred             CchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence                                1                      1233457789999999999999999999999999988


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       262 l~~~  265 (268)
T 3sxs_A          262 LREK  265 (268)
T ss_dssp             GCC-
T ss_pred             hhhc
Confidence            7543

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.79  E-value=1.4e-19  Score=134.50  Aligned_cols=113  Identities=17%  Similarity=0.085  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC--cEEEecCCCcccCCCCcc-------eeeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW--VAKVSDLGLAKVGPNMLT-------LCCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~--~~kl~dfg~~~~~~~~~~-------~~~~~~g~~~~~~   72 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++  .+||+|||+++.......       ......|+..+++
T Consensus       152 ~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a  228 (345)
T 2v62_A          152 TVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTS  228 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccC
Confidence            467899999999999995   5699999999999998877  999999999976543211       1123356667777


Q ss_pred             CccccC------------------------CC---------------------Cc---------chHHHHHHHHHHhhcc
Q 044888           73 DPFLRG------------------------KI---------------------DP---------GCFKTFTDIAKKCLAD   98 (154)
Q Consensus        73 ~~~~~~------------------------~~---------------------~~---------~~~~~~~~l~~~C~~~   98 (154)
                      ||.+.+                        ++                     +.         ..+.++.+++..||+.
T Consensus       229 PE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  308 (345)
T 2v62_A          229 LDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSL  308 (345)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTC
T ss_pred             HHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhc
Confidence            665543                        11                     11         4456899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 044888           99 RGCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~  117 (154)
                      ||++||++.+|++.|+...
T Consensus       309 dp~~Rps~~~l~~~L~~~~  327 (345)
T 2v62_A          309 AYDEKPNYQALKKILNPHG  327 (345)
T ss_dssp             CTTCCCCHHHHHHHHCTTC
T ss_pred             CcccCCCHHHHHHHHhccC
Confidence            9999999999999998653

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.79  E-value=4.2e-20  Score=136.67  Aligned_cols=114  Identities=21%  Similarity=0.275  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~---   77 (154)
                      ++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.......  .......++..+++||.+.   
T Consensus       176 ~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  252 (343)
T 1luf_A          176 QLCIARQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNR  252 (343)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHh---CCeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCC
Confidence            56789999999999994   569999999999999999999999999986543211  0111122233333333211   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++..+.+++..||+.||++||++.+|++.|+.
T Consensus       253 ~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~  332 (343)
T 1luf_A          253 YTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQR  332 (343)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             cCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHH
Confidence                                                      12344567899999999999999999999999999998


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       333 ~~~~  336 (343)
T 1luf_A          333 MCER  336 (343)
T ss_dssp             TTC-
T ss_pred             HHhh
Confidence            7653

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.79  E-value=1.8e-19  Score=131.69  Aligned_cols=116  Identities=21%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--   77 (154)
                      ..++++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........  ......++..+++||.+.  
T Consensus       146 ~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  222 (313)
T 1t46_A          146 DLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNC  222 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCC
Confidence            357789999999999994   5699999999999999999999999999876543211  011112223333333211  


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+...+..+.+++.+||+.||.+||++.++++.|
T Consensus       223 ~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  302 (313)
T 1t46_A          223 VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI  302 (313)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence                                                        122345677899999999999999999999999999


Q ss_pred             HHHHHhc
Q 044888          114 GLAWRQQ  120 (154)
Q Consensus       114 ~~~~~~~  120 (154)
                      +.+....
T Consensus       303 ~~~~~~~  309 (313)
T 1t46_A          303 EKQISES  309 (313)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988754

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.79  E-value=8.8e-20  Score=135.18  Aligned_cols=116  Identities=20%  Similarity=0.224  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~----   76 (154)
                      ++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........  ......++..+++||.+    
T Consensus       174 ~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  250 (344)
T 1rjb_A          174 LLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGI  250 (344)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHh---CCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCC
Confidence            56789999999999994   5699999999999999999999999999875432111  11111222333333321    


Q ss_pred             ------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           77 ------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        77 ------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                ....+..++..+.+++..||+.||.+||++.+|++.|+
T Consensus       251 ~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~  330 (344)
T 1rjb_A          251 YTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  330 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence                                                      11223456788999999999999999999999999999


Q ss_pred             HHHHhcC
Q 044888          115 LAWRQQG  121 (154)
Q Consensus       115 ~~~~~~~  121 (154)
                      .+.....
T Consensus       331 ~~~~~~~  337 (344)
T 1rjb_A          331 CQLADAE  337 (344)
T ss_dssp             HHC----
T ss_pred             HHHHHHH
Confidence            8766443

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.79  E-value=1.3e-19  Score=129.95  Aligned_cols=113  Identities=27%  Similarity=0.455  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC--------CCcEEEecCCCcccCCCCcceeeecccccccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE--------NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVD   73 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~--------~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~   73 (154)
                      ..+.++.|++.||.|||+....+++|+||+|.||+++.        ++.+|++|||.+........  ....|+..+++|
T Consensus       106 ~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~y~aP  183 (271)
T 3dtc_A          106 ILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK--MSAAGAYAWMAP  183 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---------------CCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccc--cCCCCccceeCH
Confidence            35788999999999999654334999999999999986        67799999999876543211  122344444444


Q ss_pred             ccccC---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           74 PFLRG---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        74 ~~~~~---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                      |.+.+                                             ..+..++..+.+++.+||+.||++||++.|
T Consensus       184 E~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  263 (271)
T 3dtc_A          184 EVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTN  263 (271)
T ss_dssp             HHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHH
Confidence            43221                                             233456788999999999999999999999


Q ss_pred             HHHHHHHH
Q 044888          109 VLCNLGLA  116 (154)
Q Consensus       109 v~~~L~~~  116 (154)
                      +++.|+.+
T Consensus       264 ~l~~L~~l  271 (271)
T 3dtc_A          264 ILDQLTTI  271 (271)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhcC
Confidence            99999853

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.78  E-value=2.9e-20  Score=139.50  Aligned_cols=117  Identities=22%  Similarity=0.241  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC---cEEEecCCCcccCCCC--cceeeecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW---VAKVSDLGLAKVGPNM--LTLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~---~~kl~dfg~~~~~~~~--~~~~~~~~g~~~~~~~~~~   76 (154)
                      .++.++.|++.||.|||+   .+++||||||.||+++.++   .+||+|||+++.....  ........++..+++||.+
T Consensus       182 ~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  258 (367)
T 3l9p_A          182 DLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAF  258 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHh
Confidence            356799999999999994   5599999999999998544   5999999998643110  0011111223333333322


Q ss_pred             c---------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           77 R---------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        77 ~---------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .                                             ...+..++..+.+|+..||+.+|++||++.+|++
T Consensus       259 ~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~  338 (367)
T 3l9p_A          259 MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILE  338 (367)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            1                                             1234456788999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 044888          112 NLGLAWRQQG  121 (154)
Q Consensus       112 ~L~~~~~~~~  121 (154)
                      .|+.+.....
T Consensus       339 ~l~~~~~~~~  348 (367)
T 3l9p_A          339 RIEYCTQDPD  348 (367)
T ss_dssp             HHHHHHHCHH
T ss_pred             HHHHHhhChh
Confidence            9999887543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.78  E-value=1.3e-19  Score=132.54  Aligned_cols=117  Identities=21%  Similarity=0.242  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--   77 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........  ......++..+++||.+.  
T Consensus       149 ~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  225 (316)
T 2xir_A          149 HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR  225 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccc
Confidence            356789999999999994   5699999999999999999999999999876543211  111112233333333211  


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+...+..+.+++..||+.||.+||++.+|++.|
T Consensus       226 ~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  305 (316)
T 2xir_A          226 VYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  305 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                                                        122334577899999999999999999999999999


Q ss_pred             HHHHHhcC
Q 044888          114 GLAWRQQG  121 (154)
Q Consensus       114 ~~~~~~~~  121 (154)
                      +.+.+...
T Consensus       306 ~~~~~~~~  313 (316)
T 2xir_A          306 GNLLQANA  313 (316)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHhhhc
Confidence            99887543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.78  E-value=1.6e-19  Score=130.42  Aligned_cols=116  Identities=16%  Similarity=0.265  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---   77 (154)
                      ..+.++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++........ ......++..+++||.+.   
T Consensus       114 ~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  190 (281)
T 3cc6_A          114 TLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRR  190 (281)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCC
Confidence            35678999999999999   45699999999999999999999999999876543210 001111222233322211   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++..+.+++.+||+.+|++||++.++++.|+.
T Consensus       191 ~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~  270 (281)
T 3cc6_A          191 FTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSD  270 (281)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHH
Confidence                                                      12233467789999999999999999999999999999


Q ss_pred             HHHhc
Q 044888          116 AWRQQ  120 (154)
Q Consensus       116 ~~~~~  120 (154)
                      +....
T Consensus       271 ~~~~~  275 (281)
T 3cc6_A          271 VYQME  275 (281)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87754

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.78  E-value=1.1e-19  Score=145.04  Aligned_cols=114  Identities=21%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---eeeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---LCCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~g~~~~~~~~~~~-   77 (154)
                      +++.|+.|++.||.|||+   .+++|||||+.||+++.++.+||+|||+++.......   ......++..|++||.+. 
T Consensus       470 ~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~  546 (635)
T 4fl3_A          470 NIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY  546 (635)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcC
Confidence            457899999999999995   5599999999999999999999999999876543211   111112223344333221 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+..++.++.+|+..||+.||++||++.+|++.|
T Consensus       547 ~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L  626 (635)
T 4fl3_A          547 YKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  626 (635)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence                                                        133556788999999999999999999999999999


Q ss_pred             HHHHH
Q 044888          114 GLAWR  118 (154)
Q Consensus       114 ~~~~~  118 (154)
                      +.+..
T Consensus       627 ~~~~~  631 (635)
T 4fl3_A          627 RNYYY  631 (635)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.78  E-value=2.2e-19  Score=129.37  Aligned_cols=116  Identities=23%  Similarity=0.306  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........ .....|+..+++||.+.+   
T Consensus       123 ~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  198 (284)
T 2a19_B          123 LALELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGK-RTRSKGTLRYMSPEQISSQDY  198 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSC-CCCCCSCCTTSCHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEEcCCCCEEECcchhheecccccc-ccccCCcccccChhhhccCCC
Confidence            357889999999999994   5699999999999999999999999999876644211 122345555665554432   


Q ss_pred             ------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhcC
Q 044888           79 ------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus        79 ------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~~  121 (154)
                                                          ..+...+..+.+++..||+.||++||++.|+++.|+.+.....
T Consensus       199 ~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~  277 (284)
T 2a19_B          199 GKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE  277 (284)
T ss_dssp             CTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred             cchhhhHHHHHHHHHHHhcCCcchhHHHHHHHhhcccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence                                                1233456678899999999999999999999999998765444

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.78  E-value=6.3e-20  Score=143.88  Aligned_cols=117  Identities=23%  Similarity=0.314  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~----   76 (154)
                      +.++++.|++.||.|||+   .+++||||++.||+++.++.+||+|||+++...... +......+++.+++||.+    
T Consensus       364 ~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  440 (535)
T 2h8h_A          364 QLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR  440 (535)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCC
Confidence            457899999999999994   559999999999999999999999999997654310 000011112222222211    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               +...+..++..+.+|+..||+.||++||++.+|++.|+.
T Consensus       441 ~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~  520 (535)
T 2h8h_A          441 FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED  520 (535)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence                                                     113345678889999999999999999999999999998


Q ss_pred             HHHhcC
Q 044888          116 AWRQQG  121 (154)
Q Consensus       116 ~~~~~~  121 (154)
                      +.....
T Consensus       521 ~~~~~~  526 (535)
T 2h8h_A          521 YFTSTE  526 (535)
T ss_dssp             SSCCCS
T ss_pred             HhhccC
Confidence            765433

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.78  E-value=4.2e-19  Score=132.19  Aligned_cols=119  Identities=17%  Similarity=0.131  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC--cEEEecCCCcccCCCCcc-------eeeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW--VAKVSDLGLAKVGPNMLT-------LCCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~--~~kl~dfg~~~~~~~~~~-------~~~~~~g~~~~~~   72 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++  .+||+|||+++.......       ......|+..+++
T Consensus       160 ~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a  236 (352)
T 2jii_A          160 SVLQVACRLLDALEFLHE---NEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFIS  236 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccC
Confidence            467899999999999995   5699999999999999988  899999999976543211       1112345666666


Q ss_pred             CccccC------------------------CCC------------------------------cchHHHHHHHHHHhhcc
Q 044888           73 DPFLRG------------------------KID------------------------------PGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        73 ~~~~~~------------------------~~~------------------------------~~~~~~~~~l~~~C~~~   98 (154)
                      ||.+.+                        ++.                              ...+..+.+++..||+.
T Consensus       237 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  316 (352)
T 2jii_A          237 MDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMAL  316 (352)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTC
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhC
Confidence            665433                        000                              12368899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCC
Q 044888           99 RGCDRPQMGDVLCNLGLAWRQQGAV  123 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~~~~~~~  123 (154)
                      ||++||++.+|++.|+.+.+.....
T Consensus       317 dp~~Rps~~~l~~~L~~~~~~~~~~  341 (352)
T 2jii_A          317 TYEEKPPYAMLRNNLEALLQDLRVS  341 (352)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             ChhhCCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999998766533

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.78  E-value=3.5e-19  Score=131.30  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      .+..++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+.  
T Consensus       142 ~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  218 (321)
T 2c30_A          142 QIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLY  218 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCC
Confidence            467889999999999994   569999999999999999999999999987765433333344566777776655330  


Q ss_pred             --------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 --------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 --------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  .....+..+.+++.+||+.||++||++.++++
T Consensus       219 ~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          219 ATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                                        11134667899999999999999999999976

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.78  E-value=3.1e-19  Score=128.63  Aligned_cols=117  Identities=19%  Similarity=0.270  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---   77 (154)
                      .+++++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||.+........ ......++..+++||.+.   
T Consensus       110 ~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  186 (279)
T 1qpc_A          110 KLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT  186 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCC
Confidence            457889999999999994   5699999999999999999999999999876543210 000111122222222211   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++..+.+++..||+.+|++||++.++++.|+.
T Consensus       187 ~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~  266 (279)
T 1qpc_A          187 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLED  266 (279)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence                                                      12234567889999999999999999999999999999


Q ss_pred             HHHhcC
Q 044888          116 AWRQQG  121 (154)
Q Consensus       116 ~~~~~~  121 (154)
                      +.....
T Consensus       267 ~~~~~~  272 (279)
T 1qpc_A          267 FFTATE  272 (279)
T ss_dssp             HHHHC-
T ss_pred             HHHhcc
Confidence            887544

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.78  E-value=1.3e-19  Score=133.64  Aligned_cols=115  Identities=23%  Similarity=0.249  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~---   77 (154)
                      .+.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........  ......++..+++||.+.   
T Consensus       166 ~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  242 (333)
T 2i1m_A          166 LLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV  242 (333)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhc---CCcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCC
Confidence            56789999999999994   5699999999999999999999999999875432111  011112223333333211   


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++..+.+++..||+.||.+||++.+|++.|+
T Consensus       243 ~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~  322 (333)
T 2i1m_A          243 YTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQ  322 (333)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHH
Confidence                                                       1123345788999999999999999999999999999


Q ss_pred             HHHHhc
Q 044888          115 LAWRQQ  120 (154)
Q Consensus       115 ~~~~~~  120 (154)
                      .+....
T Consensus       323 ~~~~~~  328 (333)
T 2i1m_A          323 EQAQED  328 (333)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887643

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.78  E-value=3.8e-19  Score=133.44  Aligned_cols=50  Identities=26%  Similarity=0.333  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||   +.+|+||||||.|||++.+ +.+||+|||+++...
T Consensus       119 ~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~  169 (361)
T 4f9c_A          119 VREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH  169 (361)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred             HHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence            3467899999999999   5569999999999999876 799999999997654

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.78  E-value=4.7e-19  Score=128.57  Aligned_cols=116  Identities=21%  Similarity=0.271  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~-   77 (154)
                      ..+.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........   .....++..+++||.+. 
T Consensus       118 ~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  194 (291)
T 1xbb_A          118 NIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY  194 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhcc
Confidence            357889999999999994   56999999999999999999999999998765432110   00111222233332211 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+..++..+.+++..||+.||++||++.+|++.|
T Consensus       195 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  274 (291)
T 1xbb_A          195 YKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  274 (291)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                                                        123345678999999999999999999999999999


Q ss_pred             HHHHHhc
Q 044888          114 GLAWRQQ  120 (154)
Q Consensus       114 ~~~~~~~  120 (154)
                      +.+....
T Consensus       275 ~~~~~~~  281 (291)
T 1xbb_A          275 RNYYYDV  281 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987644

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.78  E-value=2.7e-19  Score=142.71  Aligned_cols=102  Identities=25%  Similarity=0.262  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc-C----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR-G----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~----   78 (154)
                      ..++.||+.||.|||   ..+|+||||||.|||++.++.+||+|||+++......  .....|++.|++||.+. +    
T Consensus       295 ~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~--~~t~~GTp~YmAPEvl~~~~~y~  369 (689)
T 3v5w_A          295 RFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGVAYD  369 (689)
T ss_dssp             HHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCC--CCSCCSCGGGCCHHHHSTTCCCC
T ss_pred             HHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeecCCCC--CCCccCCcCccCHHHHhCCCCCC
Confidence            457899999999999   5669999999999999999999999999998765432  23467999999999874 2    


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MGDVL  110 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~~v~  110 (154)
                                                                .++...+.++.+|+.+||+.||.+|++     +.||.
T Consensus       370 ~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~  448 (689)
T 3v5w_A          370 SSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVK  448 (689)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence                                                      223445678899999999999999998     56664

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.77  E-value=3.9e-19  Score=128.12  Aligned_cols=112  Identities=25%  Similarity=0.359  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc------
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL------   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~------   76 (154)
                      .+.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........   ...++..+++||.+      
T Consensus       119 ~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~  192 (278)
T 1byg_A          119 LLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---TGKLPVKWTAPEALREKKFS  192 (278)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcEEEeecccccccccccc---CCCccccccCHHHhCCCCCC
Confidence            57889999999999994   5599999999999999999999999999865432110   00111112221111      


Q ss_pred             ---------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 044888           77 ---------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAW  117 (154)
Q Consensus        77 ---------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~  117 (154)
                                                             ....+..++..+.+++..||+.||++||++.++++.|+.+.
T Consensus       193 ~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~  272 (278)
T 1byg_A          193 TKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK  272 (278)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             chhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence                                                   11234456788999999999999999999999999999987


Q ss_pred             Hhc
Q 044888          118 RQQ  120 (154)
Q Consensus       118 ~~~  120 (154)
                      ...
T Consensus       273 ~~~  275 (278)
T 1byg_A          273 THE  275 (278)
T ss_dssp             HHC
T ss_pred             hhh
Confidence            654

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.77  E-value=1.1e-18  Score=129.80  Aligned_cols=107  Identities=20%  Similarity=0.204  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.............|+..|++||.+.+    
T Consensus       107 ~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  183 (337)
T 1o6l_A          107 ARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYG  183 (337)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBC
T ss_pred             HHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCC
Confidence            45688999999999994   56999999999999999999999999999865433233334567888888887643    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLCN  112 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~~  112 (154)
                                                             ..+...+.++.+++.+||+.||++||     ++.||++.
T Consensus       184 ~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          184 RAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             chhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence                                                   12334567889999999999999999     88888653

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.77  E-value=5e-19  Score=130.50  Aligned_cols=115  Identities=25%  Similarity=0.314  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFL--   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~--   76 (154)
                      +.++++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........   .....++..+++||.+  
T Consensus       146 ~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  222 (326)
T 2w1i_A          146 KLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTE  222 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcC
Confidence            357889999999999994   56999999999999999999999999998765432110   0011112222222211  


Q ss_pred             ----------------------------------------------------------cCCCCcchHHHHHHHHHHhhcc
Q 044888           77 ----------------------------------------------------------RGKIDPGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        77 ----------------------------------------------------------~~~~~~~~~~~~~~l~~~C~~~   98 (154)
                                                                                ....+..++.++.+++..||+.
T Consensus       223 ~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~  302 (326)
T 2w1i_A          223 SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNN  302 (326)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCS
T ss_pred             CCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCC
Confidence                                                                      1123345678899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHh
Q 044888           99 RGCDRPQMGDVLCNLGLAWRQ  119 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~~~  119 (154)
                      ||++||++.+|++.|+.+.+.
T Consensus       303 dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          303 NVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHH
T ss_pred             ChhhCcCHHHHHHHHHHHHHH
Confidence            999999999999999998763

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.77  E-value=6.9e-19  Score=129.68  Aligned_cols=118  Identities=25%  Similarity=0.419  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcc------
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPF------   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~------   75 (154)
                      +.+.++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||+++....... .....++..+++||.      
T Consensus       143 ~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  218 (327)
T 1fvr_A          143 QLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK-KTMGRLPVRWMAIESLNYSVY  218 (327)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECC-C----CCTTTCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeEEEcccCcCcccccccc-ccCCCCCccccChhhhccccC
Confidence            35788999999999999   45699999999999999999999999999864321100 000111111222111      


Q ss_pred             ---------------------------------------ccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 044888           76 ---------------------------------------LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        76 ---------------------------------------~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~  116 (154)
                                                             .....+..++..+.+++.+||+.+|.+||++.++++.|+.+
T Consensus       219 ~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  298 (327)
T 1fvr_A          219 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  298 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                                                   11123445678899999999999999999999999999999


Q ss_pred             HHhcCCC
Q 044888          117 WRQQGAV  123 (154)
Q Consensus       117 ~~~~~~~  123 (154)
                      .+.....
T Consensus       299 ~~~~~~~  305 (327)
T 1fvr_A          299 LEERKTY  305 (327)
T ss_dssp             HHSSSCS
T ss_pred             HHhhcCc
Confidence            8865544

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.77  E-value=3.3e-19  Score=133.72  Aligned_cols=102  Identities=10%  Similarity=-0.052  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      +.++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++......   ....++..|++||.+.+     
T Consensus       197 ~~i~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~  270 (371)
T 3q60_A          197 HILTAQLIRLAANLQS---KGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG---PASSVPVTYAPREFLNASTATF  270 (371)
T ss_dssp             HHHHHHHHHHHHHHHH---TTEEETTCSGGGEEECTTSCEEECCGGGEEETTCEE---EGGGSCGGGCCHHHHTCSEEEC
T ss_pred             HHHHHHHHHHHHHHHH---CCCccCcCCHHHEEECCCCCEEEEecceeeecCCCc---cCccCCcCCcChhhccCCCCCc
Confidence            6778999999999994   559999999999999999999999999998664321   01223344444443321     


Q ss_pred             -------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           79 -------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        79 -------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                                                                       +.....+..+.+++.+||+.||++||++.++
T Consensus       271 ~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~  350 (371)
T 3q60_A          271 THALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEA  350 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHH
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence                                                             1113567899999999999999999999999


Q ss_pred             HH
Q 044888          110 LC  111 (154)
Q Consensus       110 ~~  111 (154)
                      ++
T Consensus       351 l~  352 (371)
T 3q60_A          351 ME  352 (371)
T ss_dssp             TT
T ss_pred             hc
Confidence            73

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.77  E-value=4.4e-19  Score=128.51  Aligned_cols=119  Identities=20%  Similarity=0.253  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~-   77 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........   .....++..+++||.+. 
T Consensus       111 ~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  187 (287)
T 1u59_A          111 NVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF  187 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhcc
Confidence            457889999999999994   55999999999999999999999999998765432110   01111222233322211 


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+..++..+.+++..||+.+|++||++.++++.|
T Consensus       188 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  267 (287)
T 1u59_A          188 RKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  267 (287)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                                                        123456788999999999999999999999999999


Q ss_pred             HHHHHhcCCC
Q 044888          114 GLAWRQQGAV  123 (154)
Q Consensus       114 ~~~~~~~~~~  123 (154)
                      +.+.......
T Consensus       268 ~~~~~~~~~~  277 (287)
T 1u59_A          268 RACYYSLASK  277 (287)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHhcCCc
Confidence            9998765443

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.77  E-value=3.7e-19  Score=142.52  Aligned_cols=115  Identities=19%  Similarity=0.310  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---   77 (154)
                      .++.++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++....... ......++..|++||.+.   
T Consensus       492 ~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  568 (656)
T 2j0j_A          492 SLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRR  568 (656)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCC
Confidence            356789999999999995   5699999999999999999999999999987643211 011112223344333221   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+..++..+.+++..||+.||++||++.+|++.|+.
T Consensus       569 ~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~  648 (656)
T 2j0j_A          569 FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLST  648 (656)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence                                                      12345667899999999999999999999999999999


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       649 il~~  652 (656)
T 2j0j_A          649 ILEE  652 (656)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.77  E-value=2.8e-19  Score=127.90  Aligned_cols=115  Identities=23%  Similarity=0.298  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCcccc---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLR---   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---   77 (154)
                      ..+.++.|++.||.|||+   .+++|+||+|.||+++.++.+|++|||++........ ......++..+++||.+.   
T Consensus       105 ~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  181 (267)
T 3t9t_A          105 TLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR  181 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCC
Confidence            357889999999999994   5599999999999999999999999999876533100 000111112222222111   


Q ss_pred             ------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           78 ------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        78 ------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                ...+...+..+.+++.+||+.+|++||++.++++.|+.
T Consensus       182 ~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~  261 (267)
T 3t9t_A          182 YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAE  261 (267)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence                                                      12233457789999999999999999999999999999


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       262 l~~~  265 (267)
T 3t9t_A          262 IAES  265 (267)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8763

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.77  E-value=3.1e-19  Score=129.06  Aligned_cols=117  Identities=21%  Similarity=0.328  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFL----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~----   76 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.++|+|||.+........ ......++..+++||.+    
T Consensus       112 ~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  188 (288)
T 3kfa_A          112 VLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK  188 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCC
Confidence            356789999999999994   5599999999999999999999999999876653211 11111122223332221    


Q ss_pred             -----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           77 -----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        77 -----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                               ....+..++..+.+++..||+.||.+||++.++++.|+.
T Consensus       189 ~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~  268 (288)
T 3kfa_A          189 FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFET  268 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHH
Confidence                                                     112344567889999999999999999999999999999


Q ss_pred             HHHhcC
Q 044888          116 AWRQQG  121 (154)
Q Consensus       116 ~~~~~~  121 (154)
                      +.....
T Consensus       269 ~~~~~~  274 (288)
T 3kfa_A          269 MFQESS  274 (288)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            887543

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.77  E-value=3.9e-19  Score=130.50  Aligned_cols=114  Identities=16%  Similarity=0.248  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~--   77 (154)
                      ..++++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........  .....++..+++||.+.  
T Consensus       139 ~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  215 (322)
T 1p4o_A          139 KMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG  215 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccC
Confidence            356789999999999995   56999999999999999999999999998754321110  00111222333333221  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++..+.+++.+||+.||++||++.++++.|+
T Consensus       216 ~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~  295 (322)
T 1p4o_A          216 VFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  295 (322)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHG
T ss_pred             CCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence                                                       1233456788999999999999999999999999998


Q ss_pred             HHHH
Q 044888          115 LAWR  118 (154)
Q Consensus       115 ~~~~  118 (154)
                      .+..
T Consensus       296 ~~~~  299 (322)
T 1p4o_A          296 EEME  299 (322)
T ss_dssp             GGSC
T ss_pred             Hhhc
Confidence            7644

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.77  E-value=7.9e-19  Score=130.24  Aligned_cols=107  Identities=22%  Similarity=0.236  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .+..++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........ .....|+..|++||.+.+   
T Consensus       131 ~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~  206 (335)
T 3dls_A          131 LASYIFRQLVSAVGYLRL---KDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKL-FYTFCGTIEYCAPEVLMGNPY  206 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCC-BCEECSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeEEeccCHHHEEEcCCCcEEEeecccceECCCCCc-eeccCCCccccChhhhcCCCC
Confidence            356789999999999994   5699999999999999999999999999987654321 223346666776665533   


Q ss_pred             -----------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -----------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -----------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                         ..+...+.++.+++..||+.||++||++.++++.
T Consensus       207 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          207 RGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSSCSCSSGGGGTTTCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             CCCcccchhHHHHHHHHHhCCCchhhHHHHHhhccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                                               1223357789999999999999999999999864

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.76  E-value=4.7e-19  Score=128.21  Aligned_cols=116  Identities=22%  Similarity=0.265  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCcccc-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLR-   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~-   77 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........   .....++..+++||.+. 
T Consensus       122 ~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  198 (291)
T 1u46_A          122 TLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKT  198 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcC
Confidence            356789999999999994   56999999999999999999999999998765432110   01111222233222211 


Q ss_pred             ---------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 ---------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ---------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                   ...+..++..+.+++..||+.||++||++.++++.
T Consensus       199 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  278 (291)
T 1u46_A          199 RTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF  278 (291)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                                                         12234567889999999999999999999999999


Q ss_pred             HHHHHHhc
Q 044888          113 LGLAWRQQ  120 (154)
Q Consensus       113 L~~~~~~~  120 (154)
                      |+.+....
T Consensus       279 l~~~~~~~  286 (291)
T 1u46_A          279 LLEAQPTD  286 (291)
T ss_dssp             HHHHC---
T ss_pred             HHHhCccc
Confidence            99876543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.76  E-value=5.9e-19  Score=130.68  Aligned_cols=105  Identities=18%  Similarity=0.209  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||++....... ......|+..+++||.+.+    
T Consensus       116 ~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~  191 (328)
T 3fe3_A          116 ARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG-KLDAFCGAPPYAAPELFQGKKYD  191 (328)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC-GGGTTSSSGGGCCHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC-ccccccCCcceeCcccccCCCcC
Confidence            46789999999999994   569999999999999999999999999997654321 1223356667777665533    


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ..+...+.++.+++.+||+.||.+|||+.|+++
T Consensus       192 ~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          192 GPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             SHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             CchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                                                    122335678889999999999999999999975

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.76  E-value=7.5e-19  Score=134.80  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+  ..+++||||+|.||+++.++.+||+|||+++.............|+..|++||.+.+   
T Consensus       249 ~~~~~~~qi~~aL~~LH~--~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  326 (446)
T 4ejn_A          249 RARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDY  326 (446)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHHhh--cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCC
Confidence            356789999999999995  156999999999999999999999999999865443333334567777887776543   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~  111 (154)
                                                              ..+...+.++.+++..||+.||.+||     ++.|+++
T Consensus       327 ~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          327 GRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence                                                    22345667889999999999999999     9999874

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.76  E-value=4.5e-19  Score=140.08  Aligned_cols=105  Identities=22%  Similarity=0.247  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC--CcEEEecCCCcccCCCCcceeeecccccccccCccccCC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN--WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK-   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~--~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-   79 (154)
                      ...++.|++.||.|||+   .+|+||||||.|||++.+  +.+||+|||+++.+.... ......|+..|++||.+.+. 
T Consensus       257 ~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~-~~~~~~GT~~y~APEv~~~~~  332 (573)
T 3uto_A          257 AVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-SVKVTTGTAEFAAPEVAEGKP  332 (573)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-EEEEECSSGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC-ceeeeEECccccCHHHhCCCC
Confidence            35688999999999994   559999999999999854  789999999998876532 23345788899888876541 


Q ss_pred             ------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 ------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 ------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                .+    ...+.++.+|+.+||+.||++||++.|+++
T Consensus       333 y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          333 VGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             BCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                                      11    234678899999999999999999999975

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.76  E-value=6.6e-19  Score=130.90  Aligned_cols=107  Identities=17%  Similarity=0.260  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||++....... ......|+..+++||.+.+   
T Consensus       109 ~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~  184 (336)
T 3h4j_B          109 EGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN-FLKTSCGSPNYAAPEVINGKLY  184 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB-TTCCCTTSTTTSCGGGSCCSGG
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEeccceeccCCc-ccccccCCcCcCCHHHHcCCCC
Confidence            356789999999999994   559999999999999999999999999997664421 1123346666666666543   


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                               ..+...+..+.+++.+||+.||.+|||+.|+++.
T Consensus       185 ~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          185 AGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             GCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred             CCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence                                                     1233467889999999999999999999999854

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.76  E-value=1.4e-19  Score=130.98  Aligned_cols=110  Identities=20%  Similarity=0.330  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc--------EEEecCCCcccCCCCcceeeecccccccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV--------AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVD   73 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~--------~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~   73 (154)
                      +++.++.|++.||.|||+   .+++|+||+|.||+++.++.        +|++|||++.......    ...++..+++|
T Consensus       114 ~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aP  186 (289)
T 4fvq_A          114 WKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD----ILQERIPWVPP  186 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHH----HHHHTTTTSCH
T ss_pred             HHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCcccccccceeeeccCcccccccCcc----ccCCcCcccCH
Confidence            467889999999999994   55999999999999988776        9999999986653311    11223333333


Q ss_pred             ccccC--------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           74 PFLRG--------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        74 ~~~~~--------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                      |.+.+                                            ..+...+.++.+++..||+.||++||++.++
T Consensus       187 E~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  266 (289)
T 4fvq_A          187 ECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAI  266 (289)
T ss_dssp             HHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHH
T ss_pred             HHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            32221                                            2233445678899999999999999999999


Q ss_pred             HHHHHHHHH
Q 044888          110 LCNLGLAWR  118 (154)
Q Consensus       110 ~~~L~~~~~  118 (154)
                      ++.|+.+..
T Consensus       267 l~~l~~l~~  275 (289)
T 4fvq_A          267 IRDLNSLFT  275 (289)
T ss_dssp             HHHHHTCC-
T ss_pred             HHHHHHhcC
Confidence            999997765

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.76  E-value=7.7e-19  Score=133.72  Aligned_cols=102  Identities=14%  Similarity=0.073  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      .++.++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.....   .....| ..|++||.+     
T Consensus       212 ~~~~i~~qi~~aL~~LH~---~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~  284 (413)
T 3dzo_A          212 ARLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERML  284 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCCcccceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhcccc
Confidence            467788999999999994   55999999999999999999999999998765432   222345 666666655     


Q ss_pred             -----cC---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           77 -----RG---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        77 -----~~---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                           .+                                       ......+..+.+|+..||+.||++||++.+++
T Consensus       285 ~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l  362 (413)
T 3dzo_A          285 PFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAM  362 (413)
T ss_dssp             TTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             ccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhHHHHHhhcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence                 21                                       01134678899999999999999999987775

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.76  E-value=8.2e-19  Score=127.36  Aligned_cols=107  Identities=21%  Similarity=0.201  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+   
T Consensus       102 ~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  178 (292)
T 3o0g_A          102 IVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKL  178 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCC
Confidence            356789999999999994   56999999999999999999999999999776533222223344555555554322   


Q ss_pred             --------------------CC---------------------------------------------------CcchHHH
Q 044888           79 --------------------KI---------------------------------------------------DPGCFKT   87 (154)
Q Consensus        79 --------------------~~---------------------------------------------------~~~~~~~   87 (154)
                                          ..                                                   .+..+..
T Consensus       179 ~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
T 3o0g_A          179 YSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNAT  258 (292)
T ss_dssp             CCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHH
T ss_pred             cCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChH
Confidence                                00                                                   0124567


Q ss_pred             HHHHHHHhhccCCCCCCCHHHHHH
Q 044888           88 FTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        88 ~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +.+++.+||+.||++|||+.|+++
T Consensus       259 ~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          259 GRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHhccChhhCCCHHHHhc
Confidence            789999999999999999999975

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.76  E-value=3.5e-19  Score=130.89  Aligned_cols=106  Identities=24%  Similarity=0.307  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc------------eeeeccccccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT------------LCCYQSGTLGL   70 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~------------~~~~~~g~~~~   70 (154)
                      .+.++.|++.||.|||+   .+++|+||||.||+++.++.+||+|||+++.......            ......|+..+
T Consensus       166 ~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  242 (332)
T 3qd2_B          166 CLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLY  242 (332)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGG
T ss_pred             HHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCc
Confidence            57899999999999994   5599999999999999999999999999987654311            11223577778


Q ss_pred             ccCccccCCC---------------------------------------C---cchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           71 VVDPFLRGKI---------------------------------------D---PGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        71 ~~~~~~~~~~---------------------------------------~---~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                      ++||.+.+..                                       +   ......+.+++..||+.||++||++.|
T Consensus       243 ~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  322 (332)
T 3qd2_B          243 MSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATD  322 (332)
T ss_dssp             SCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHH
T ss_pred             cChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCcCCCHHH
Confidence            8777654311                                       1   122356678999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      +++
T Consensus       323 ~l~  325 (332)
T 3qd2_B          323 IIE  325 (332)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            985

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.76  E-value=2.5e-18  Score=132.13  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec---CCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~---~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++   .++.+||+|||++..............|+..|++||.+.+.
T Consensus       112 ~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~  188 (444)
T 3soa_A          112 ASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKD  188 (444)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCC
Confidence            46789999999999994   5699999999999998   45789999999998766543333345677888887766430


Q ss_pred             -------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 -------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 -------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 .+    ...+.++.+++..||+.||++||++.|+++
T Consensus       189 ~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          189 PYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                                                       01    245778999999999999999999999986

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.76  E-value=2.2e-18  Score=127.37  Aligned_cols=119  Identities=25%  Similarity=0.309  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCC-----CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce----eeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGT-----RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL----CCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~-----~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~----~~~~~g~~~~~~   72 (154)
                      +++.++.|++.||.|||...     ..+++|+||+|.||+++.++.+||+|||++.........    .....|+..+++
T Consensus       140 ~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~a  219 (342)
T 1b6c_B          140 GMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA  219 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCC
Confidence            46789999999999999321     245999999999999999999999999998654321100    011122222222


Q ss_pred             Ccccc------------------------------------------------------------------CCCC-----
Q 044888           73 DPFLR------------------------------------------------------------------GKID-----   81 (154)
Q Consensus        73 ~~~~~------------------------------------------------------------------~~~~-----   81 (154)
                      ||.+.                                                                  ...+     
T Consensus       220 PE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (342)
T 1b6c_B          220 PEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQS  299 (342)
T ss_dssp             HHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGT
T ss_pred             HhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcccccc
Confidence            22111                                                                  1111     


Q ss_pred             cchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhc
Q 044888           82 PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ  120 (154)
Q Consensus        82 ~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~  120 (154)
                      ..++..+.+|+.+||+.||++||++.+|++.|+.+.+..
T Consensus       300 ~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          300 CEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             SHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence            234568999999999999999999999999999987654

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.76  E-value=6.6e-19  Score=128.25  Aligned_cols=117  Identities=19%  Similarity=0.256  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccccCC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFLRGK-   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~-   79 (154)
                      ..+.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++....... .......|+..+++||.+.+. 
T Consensus       112 ~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  188 (294)
T 4eqm_A          112 TAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEA  188 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCC
Confidence            357889999999999994   559999999999999999999999999997654321 112223456666666654330 


Q ss_pred             -----------------------------------------------CCcchHHHHHHHHHHhhccCCCCCC-CHHHHHH
Q 044888           80 -----------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRP-QMGDVLC  111 (154)
Q Consensus        80 -----------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP-~~~~v~~  111 (154)
                                                                     .+...+..+.+++.+||+.||.+|| ++.++..
T Consensus       189 ~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~  268 (294)
T 4eqm_A          189 TDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKD  268 (294)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHH
T ss_pred             CCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHH
Confidence                                                           1123567899999999999999998 9999999


Q ss_pred             HHHHHHHhcC
Q 044888          112 NLGLAWRQQG  121 (154)
Q Consensus       112 ~L~~~~~~~~  121 (154)
                      .|+.+.....
T Consensus       269 ~l~~~~~~~~  278 (294)
T 4eqm_A          269 DLSSVLHENR  278 (294)
T ss_dssp             HHHTSSSSSS
T ss_pred             HHHHHHhhcc
Confidence            9987665444

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.75  E-value=9.3e-19  Score=126.05  Aligned_cols=107  Identities=22%  Similarity=0.229  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .+..++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+   
T Consensus       113 ~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  189 (278)
T 3cok_A          113 EARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAH  189 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCCTTCEECC--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCC
Confidence            457889999999999994   56999999999999999999999999998765432221222334444555443322   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ..+...+.++.+++.+||+.||++||++.++++
T Consensus       190 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          190 GLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             --CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence                                                    123345778999999999999999999999975

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.75  E-value=2.7e-18  Score=125.95  Aligned_cols=106  Identities=23%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK---   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---   79 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++..............++..+++||.+.+.   
T Consensus       121 ~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  197 (311)
T 3niz_A          121 IKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKY  197 (311)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSC
T ss_pred             HHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCC
Confidence            4678999999999999   4569999999999999999999999999998765433323334456666666654320   


Q ss_pred             ----------------------C-------------------------------------------------CcchHHHH
Q 044888           80 ----------------------I-------------------------------------------------DPGCFKTF   88 (154)
Q Consensus        80 ----------------------~-------------------------------------------------~~~~~~~~   88 (154)
                                            +                                                 .+..+.++
T Consensus       198 ~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (311)
T 3niz_A          198 STSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEG  277 (311)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHH
T ss_pred             CchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHH
Confidence                                  0                                                 01123567


Q ss_pred             HHHHHHhhccCCCCCCCHHHHHH
Q 044888           89 TDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        89 ~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+++.+||+.||++|||+.|+++
T Consensus       278 ~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          278 IDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             HHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHHHHcCCChhHCCCHHHHhc
Confidence            89999999999999999999975

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.75  E-value=1e-18  Score=127.96  Aligned_cols=114  Identities=21%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---------eeeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---------LCCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---------~~~~~~g~~~~~~   72 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||.+........         ......|+..+++
T Consensus       135 ~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  211 (317)
T 2buj_A          135 QILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRA  211 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCC
Confidence            457889999999999995   5699999999999999999999999998765432100         0001123444444


Q ss_pred             CccccC-------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCC
Q 044888           73 DPFLRG-------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDR  103 (154)
Q Consensus        73 ~~~~~~-------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~R  103 (154)
                      ||.+.+                                                 +.+...+..+.+++..||+.||.+|
T Consensus       212 PE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  291 (317)
T 2buj_A          212 PELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQR  291 (317)
T ss_dssp             GGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             HhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCCccccCCHHHHHHHHHHhhcChhhC
Confidence            443321                                                 1123457789999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 044888          104 PQMGDVLCNLGLAWR  118 (154)
Q Consensus       104 P~~~~v~~~L~~~~~  118 (154)
                      |++.++++.|+.+..
T Consensus       292 ps~~~ll~~L~~~~~  306 (317)
T 2buj_A          292 PHIPLLLSQLEALQP  306 (317)
T ss_dssp             CCHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHhhhcCC
Confidence            999999999987643

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.75  E-value=2.1e-18  Score=123.39  Aligned_cols=110  Identities=20%  Similarity=0.277  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      +++.++.|++.||.|||+. ..+++|+||+|.||+++.++.+++.|||++......     ...|+..+++||.+.    
T Consensus       112 ~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~-----~~~~t~~y~aPE~~~~~~~  185 (271)
T 3kmu_A          112 QAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSP-----GRMYAPAWVAPEALQKKPE  185 (271)
T ss_dssp             HHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCT-----TCBSCGGGSCHHHHHSCGG
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcCCcceeEEeccceeeeccc-----CccCCccccChhhhccCCC
Confidence            4678999999999999943 133999999999999999999999988776443221     112233333333221    


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                  ...+...+..+.+++..||+.||++||++.++++.|
T Consensus       186 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L  265 (271)
T 3kmu_A          186 DTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPIL  265 (271)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                                                        123445678899999999999999999999999999


Q ss_pred             HHHH
Q 044888          114 GLAW  117 (154)
Q Consensus       114 ~~~~  117 (154)
                      +.+.
T Consensus       266 ~~l~  269 (271)
T 3kmu_A          266 EKMQ  269 (271)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            9874

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.75  E-value=7.7e-19  Score=132.02  Aligned_cols=109  Identities=12%  Similarity=0.029  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .+++|+.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.....   .....| ..|++||.+.+   
T Consensus       207 ~~~~i~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~  279 (377)
T 3byv_A          207 ARLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAR---VVSSVS-RGFEPPELEARRAT  279 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCGGGCEETTCE---EECCCC-TTCCCHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEechhheecCCc---ccCCCC-cCccChhhhccccc
Confidence            356789999999999995   55999999999999999999999999999864431   122234 55555554321   


Q ss_pred             -----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                     ......+.++.+++.+||+.||++||++.++++
T Consensus       280 ~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          280 ISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             THHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             ccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccchhhhhhhccCCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence                                                           111356788999999999999999999999985


Q ss_pred             --HHHHHH
Q 044888          112 --NLGLAW  117 (154)
Q Consensus       112 --~L~~~~  117 (154)
                        .++.+.
T Consensus       360 hp~f~~~~  367 (377)
T 3byv_A          360 TPEYEQLR  367 (377)
T ss_dssp             SHHHHHHH
T ss_pred             ChHHHHHH
Confidence              444443

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.75  E-value=3.5e-18  Score=129.59  Aligned_cols=101  Identities=26%  Similarity=0.268  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.............|+..|++||.+.+    
T Consensus       155 ~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~  231 (396)
T 4dc2_A          155 ARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYG  231 (396)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCC
Confidence            45689999999999994   55999999999999999999999999999864332233334567777777776543    


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                                      ..+...+.++.+|+..||+.||.+||++
T Consensus       232 ~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          232 FSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence                                                            1223456678899999999999999996

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.75  E-value=8.9e-19  Score=130.98  Aligned_cols=106  Identities=23%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.............|+..|++||.+.+    
T Consensus       126 ~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  202 (353)
T 3txo_A          126 ARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYG  202 (353)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcC
Confidence            45689999999999994   56999999999999999999999999999865433333334567777777776532    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH------HHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM------GDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~------~~v~~  111 (154)
                                                             .++...+..+.+++..||+.||.+||++      .++++
T Consensus       203 ~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          203 PAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             CccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence                                                   2334467788999999999999999998      66653

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.75  E-value=2.7e-18  Score=123.79  Aligned_cols=106  Identities=24%  Similarity=0.327  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++|+||+|.||+++.++.++|+|||++.......  .....|+..+++||.+.+   
T Consensus       110 ~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~  184 (279)
T 3fdn_A          110 RTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR--RTDLCGTLDYLPPEMIEGRMH  184 (279)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC----------CCCCTTCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCccc--ccccCCCCCccCHhHhccCCC
Confidence            35678999999999999   5669999999999999999999999999875543321  112234555555554332   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                              ..+...+..+.+++..||+.||++||++.|+++.
T Consensus       185 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          185 DEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             CccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence                                                    2233456778999999999999999999999864

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.74  E-value=3e-18  Score=128.14  Aligned_cols=101  Identities=22%  Similarity=0.193  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++.............|+..|++||.+.+    
T Consensus       123 ~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  199 (353)
T 2i0e_A          123 AVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYG  199 (353)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBS
T ss_pred             HHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcC
Confidence            56789999999999994   56999999999999999999999999999864432223334567788888776543    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                             .++...+.++.+++.+||+.||.+||++
T Consensus       200 ~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          200 KSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred             CcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence                                                   2234456788999999999999999964

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.74  E-value=2.3e-18  Score=125.81  Aligned_cols=107  Identities=22%  Similarity=0.236  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+.  
T Consensus       103 ~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  179 (311)
T 4agu_A          103 LVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQ  179 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCC
Confidence            356789999999999994   569999999999999999999999999997765322222223445555555543220  


Q ss_pred             ---------------------CC----------------------------------------------------cchHH
Q 044888           80 ---------------------ID----------------------------------------------------PGCFK   86 (154)
Q Consensus        80 ---------------------~~----------------------------------------------------~~~~~   86 (154)
                                           .+                                                    +..+.
T Consensus       180 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 4agu_A          180 YGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISY  259 (311)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCH
T ss_pred             CCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccH
Confidence                                 00                                                    12345


Q ss_pred             HHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           87 TFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        87 ~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+.+++..||+.||++|||+.|+++
T Consensus       260 ~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          260 PALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             HHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHccCChhhcCCHHHHhc
Confidence            5788999999999999999999974

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.74  E-value=3.9e-18  Score=136.94  Aligned_cols=102  Identities=22%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||+   .+|+||||||.|||++.++.+||+|||+++.............|+..|++||.+.+   
T Consensus       443 ~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  519 (674)
T 3pfq_A          443 HAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPY  519 (674)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCB
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCC
Confidence            356789999999999994   56999999999999999999999999999865433333445568888888887653   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                              .++...+.++.+|+..||+.||.+||++
T Consensus       520 ~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          520 GKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             STHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred             CccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHccCCHHHCCCC
Confidence                                                    2344567889999999999999999998

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.74  E-value=1.3e-18  Score=128.74  Aligned_cols=108  Identities=24%  Similarity=0.263  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .++.++.|++.||.|||+   .+++|+||++.||+++.++.+||+|||++..............|+..+++||.+.+   
T Consensus       142 ~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  218 (335)
T 2owb_A          142 EARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGH  218 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCB
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCC
Confidence            457889999999999994   56999999999999999999999999999776432222223345555555554322   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                              ..+...+..+.+++.+||+.||++||++.|+++.
T Consensus       219 ~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          219 SFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             CchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                                                    1233456778999999999999999999999863

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.74  E-value=1.7e-18  Score=125.75  Aligned_cols=108  Identities=24%  Similarity=0.263  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ++..++.|++.||.|||+   .+++|+||++.||+++.++.+||+|||++..............|+..+++||.+.+   
T Consensus       116 ~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  192 (294)
T 2rku_A          116 EARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGH  192 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCB
T ss_pred             HHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCC
Confidence            457889999999999994   56999999999999999999999999998765432222223345555555554322   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                              ..+...+..+.+++.+||+.||++||++.++++.
T Consensus       193 ~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          193 SFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence                                                    1234456788999999999999999999999864

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.74  E-value=2.3e-18  Score=125.83  Aligned_cols=106  Identities=25%  Similarity=0.224  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........ .....|+..+++||.+.+   
T Consensus       121 ~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~  196 (308)
T 3g33_A          121 TIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA-LTPVVVTLWYRAPEVLLQSTY  196 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCC-SGGGGCCCSSCCHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcc-cCCccccccccCchHHcCCCC
Confidence            357789999999999995   5599999999999999999999999999976543211 122344555555554422   


Q ss_pred             -------------------C--C----------------------------------------------CcchHHHHHHH
Q 044888           79 -------------------K--I----------------------------------------------DPGCFKTFTDI   91 (154)
Q Consensus        79 -------------------~--~----------------------------------------------~~~~~~~~~~l   91 (154)
                                         .  +                                              .+..+..+.++
T Consensus       197 ~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (308)
T 3g33_A          197 ATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQL  276 (308)
T ss_dssp             CSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHH
Confidence                               0  0                                              01345677899


Q ss_pred             HHHhhccCCCCCCCHHHHHH
Q 044888           92 AKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        92 ~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +.+||+.||++|||+.|+++
T Consensus       277 i~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          277 LLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             HHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHhcCCCccCCCHHHHhc
Confidence            99999999999999999975

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.74  E-value=3.9e-18  Score=128.97  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .+..++.|++.||.|||   ..+++||||+|.||+++ ++.+||+|||+++.......  ......|+..|++||.+.+ 
T Consensus       156 ~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  231 (390)
T 2zmd_A          156 ERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDM  231 (390)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhc
Confidence            46788999999999999   55699999999999995 57899999999987644221  1223457777777775421 


Q ss_pred             --------------------------------------------------------CCCcchHHHHHHHHHHhhccCCCC
Q 044888           79 --------------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCD  102 (154)
Q Consensus        79 --------------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~  102 (154)
                                                                              ..+...+.++.+|+..||+.||++
T Consensus       232 ~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  311 (390)
T 2zmd_A          232 SSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQ  311 (390)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTT
T ss_pred             cccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccchHHHHHHHHHHcccChhh
Confidence                                                                    112233567899999999999999


Q ss_pred             CCCHHHHHHH
Q 044888          103 RPQMGDVLCN  112 (154)
Q Consensus       103 RP~~~~v~~~  112 (154)
                      ||++.|+++.
T Consensus       312 Rps~~ell~h  321 (390)
T 2zmd_A          312 RISIPELLAH  321 (390)
T ss_dssp             SCCHHHHHTS
T ss_pred             CCCHHHHhhC
Confidence            9999999854

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.74  E-value=1.1e-18  Score=130.13  Aligned_cols=106  Identities=24%  Similarity=0.197  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++.............|+..|++||.+.+   
T Consensus       119 ~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  195 (345)
T 1xjd_A          119 RATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKY  195 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCC
Confidence            356789999999999994   56999999999999999999999999999865432223334567777887776543   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH-HHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG-DVL  110 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~-~v~  110 (154)
                                                              .++...+.++.+++.+||+.||++||++. +|.
T Consensus       196 ~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          196 NHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             CChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence                                                    12334567889999999999999999997 664

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.74  E-value=2.3e-18  Score=125.50  Aligned_cols=109  Identities=24%  Similarity=0.320  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+   
T Consensus       120 ~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  196 (303)
T 3a7i_A          120 QIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAY  196 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCC
Confidence            457889999999999994   55999999999999999999999999998765443222223345555555554432   


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                               ..+...+..+.+++..||+.||++||++.++++..
T Consensus       197 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~  272 (303)
T 3a7i_A          197 DSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK  272 (303)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred             CchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence                                                     12234567789999999999999999999998654

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.74  E-value=3.8e-18  Score=126.80  Aligned_cols=108  Identities=28%  Similarity=0.277  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||+++.............|+..+++||.+.+.  
T Consensus       113 ~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  189 (346)
T 1ua2_A          113 HIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM  189 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCC
Confidence            457889999999999994   559999999999999999999999999997764332222233455555555544220  


Q ss_pred             -----------------------C-----------------------------------------------CcchHHHHH
Q 044888           80 -----------------------I-----------------------------------------------DPGCFKTFT   89 (154)
Q Consensus        80 -----------------------~-----------------------------------------------~~~~~~~~~   89 (154)
                                             +                                               ....+.++.
T Consensus       190 ~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (346)
T 1ua2_A          190 YGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLL  269 (346)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHH
T ss_pred             CCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHH
Confidence                                   0                                               012246788


Q ss_pred             HHHHHhhccCCCCCCCHHHHHHH
Q 044888           90 DIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        90 ~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      +++.+||+.||++|||+.|+++.
T Consensus       270 ~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          270 DLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             HHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHhccChhhCCCHHHHhcC
Confidence            99999999999999999999764

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.74  E-value=5.6e-18  Score=131.22  Aligned_cols=106  Identities=21%  Similarity=0.306  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||++....... ......|+..+++||.+.+   
T Consensus       117 ~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~  192 (476)
T 2y94_A          117 ESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE-FLRTSCGSPNYAAPEVISGRLY  192 (476)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC-CBCCCCSCSTTCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc-cccccCCCcCeEChhhccCCCC
Confidence            35678999999999999   5569999999999999999999999999998764421 1223356666766665543   


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                               ..+...+.++.+++.+||+.||++|||+.++++
T Consensus       193 ~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          193 AGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence                                                     112335678899999999999999999999985

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.74  E-value=3.5e-18  Score=129.59  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++|||||+.||+++.   ++.+||+|||+++...... ......|+..|++||.+.+
T Consensus       162 ~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~  237 (400)
T 1nxk_A          162 EASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN-SLTTPCYTPYYVAPEVLGP  237 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC------------CTTCCGGGSCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEEecccccccCCCC-ccccCCCCCCccCHhhcCC
Confidence            356789999999999994   56999999999999987   7889999999998654321 1123345666666665532


Q ss_pred             C-----------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 K-----------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ~-----------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                      .                                               .+    ...+.++.+++..||+.||++||++.
T Consensus       238 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  317 (400)
T 1nxk_A          238 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT  317 (400)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHH
Confidence            0                                               00    23567899999999999999999999


Q ss_pred             HHHHH
Q 044888          108 DVLCN  112 (154)
Q Consensus       108 ~v~~~  112 (154)
                      |++..
T Consensus       318 eil~h  322 (400)
T 1nxk_A          318 EFMNH  322 (400)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            99864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.74  E-value=3.4e-18  Score=126.92  Aligned_cols=107  Identities=21%  Similarity=0.251  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .+..++.|++.||.|||+   .+++||||+|.||+++ ++.+||+|||+++.......  ......|+..|++||.+.+ 
T Consensus       109 ~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  184 (343)
T 3dbq_A          109 ERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDM  184 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhc
Confidence            457889999999999994   5599999999999997 57899999999987644221  1123356666666665420 


Q ss_pred             --------------------------------------------------------CCCcchHHHHHHHHHHhhccCCCC
Q 044888           79 --------------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCD  102 (154)
Q Consensus        79 --------------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~  102 (154)
                                                                              ..+...+..+.+++..||+.||.+
T Consensus       185 ~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~  264 (343)
T 3dbq_A          185 SSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQ  264 (343)
T ss_dssp             C-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTT
T ss_pred             cccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhH
Confidence                                                                    122334567899999999999999


Q ss_pred             CCCHHHHHHH
Q 044888          103 RPQMGDVLCN  112 (154)
Q Consensus       103 RP~~~~v~~~  112 (154)
                      ||++.|+++.
T Consensus       265 Rpt~~e~l~h  274 (343)
T 3dbq_A          265 RISIPELLAH  274 (343)
T ss_dssp             SCCHHHHHTS
T ss_pred             CCCHHHHHhC
Confidence            9999999864

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.74  E-value=2.2e-18  Score=128.53  Aligned_cols=106  Identities=20%  Similarity=0.215  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc---EEEecCCCcccCCCCcceeeecccccccccCccccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV---AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~---~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.   +|++|||++..............|+..|++||.+.+.
T Consensus       132 ~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  208 (351)
T 3c0i_A          132 ASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKRE  208 (351)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCC
Confidence            45789999999999994   56999999999999976544   9999999998765533323344577777777765431


Q ss_pred             ------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 ------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 ------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                .+    ...+.++.+++.+||+.||++||++.++++
T Consensus       209 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          209 PYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                                                      01    124567889999999999999999999984

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.74  E-value=2.7e-18  Score=125.74  Aligned_cols=117  Identities=24%  Similarity=0.296  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC-----cceeeecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM-----LTLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~g~~~~~~~~~~   76 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++ ++.+|++|||++......     ........|+..+++||.+
T Consensus       131 ~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~  206 (319)
T 2y4i_B          131 KTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEII  206 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHh
Confidence            467899999999999995   5599999999999998 678999999987654321     0111122345555555543


Q ss_pred             cC------------------------------------------------------CCCcchHHHHHHHHHHhhccCCCC
Q 044888           77 RG------------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCD  102 (154)
Q Consensus        77 ~~------------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~  102 (154)
                      .+                                                      ......+.++.+++..||+.||++
T Consensus       207 ~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  286 (319)
T 2y4i_B          207 RQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEE  286 (319)
T ss_dssp             SCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCTTHHHHHHHHHCSSTTT
T ss_pred             hhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCCCHHHHHHHHHHhcCChhh
Confidence            21                                                      011134567899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCC
Q 044888          103 RPQMGDVLCNLGLAWRQQGA  122 (154)
Q Consensus       103 RP~~~~v~~~L~~~~~~~~~  122 (154)
                      ||++.++++.|+.+.+....
T Consensus       287 Rpt~~~l~~~l~~l~~~~~~  306 (319)
T 2y4i_B          287 RPTFTKLMDMLEKLPKRNRR  306 (319)
T ss_dssp             SCCHHHHHHHHTTC------
T ss_pred             CcCHHHHHHHHHHHHHhhcc
Confidence            99999999999988765433

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.74  E-value=4.1e-18  Score=124.78  Aligned_cols=116  Identities=23%  Similarity=0.243  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ..+.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++....... .......|+..+++||.+.+  
T Consensus       135 ~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  211 (309)
T 2h34_A          135 RAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESH  211 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC--
T ss_pred             HHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCC
Confidence            457889999999999994   569999999999999999999999999987654321 11122345566666665532  


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-CHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-QMGDVLCNL  113 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-~~~~v~~~L  113 (154)
                                                                  ..+...+..+.+++.+||+.||++|| ++.+++..|
T Consensus       212 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l  291 (309)
T 2h34_A          212 ATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAA  291 (309)
T ss_dssp             --CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred             CCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHH
Confidence                                                        11234566789999999999999999 999999999


Q ss_pred             HHHHHhc
Q 044888          114 GLAWRQQ  120 (154)
Q Consensus       114 ~~~~~~~  120 (154)
                      +......
T Consensus       292 ~~~l~~~  298 (309)
T 2h34_A          292 HAALATA  298 (309)
T ss_dssp             HHTCC--
T ss_pred             HHHHHhh
Confidence            9765543

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.74  E-value=3.6e-18  Score=122.97  Aligned_cols=103  Identities=20%  Similarity=0.322  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-------------------CCcEEEecCCCcccCCCCcceee
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-------------------NWVAKVSDLGLAKVGPNMLTLCC   62 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-------------------~~~~kl~dfg~~~~~~~~~~~~~   62 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.                   ...+|++|||.+.......    
T Consensus       116 ~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~----  188 (289)
T 1x8b_A          116 ELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ----  188 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSC----
T ss_pred             HHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCcc----
Confidence            357789999999999994   56999999999999984                   4478999999987664321    


Q ss_pred             ecccccccccCccccC------------------------------------------CCCcchHHHHHHHHHHhhccCC
Q 044888           63 YQSGTLGLVVDPFLRG------------------------------------------KIDPGCFKTFTDIAKKCLADRG  100 (154)
Q Consensus        63 ~~~g~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~l~~~C~~~~p  100 (154)
                      ...|+..+++||.+.+                                          ..+...+..+.+++.+||+.||
T Consensus       189 ~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp  268 (289)
T 1x8b_A          189 VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVLSQEFTELLKVMIHPDP  268 (289)
T ss_dssp             CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHHHTTCCCCCSSCCCHHHHHHHHHHTCSSG
T ss_pred             ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHHHcCCCCCCCcccCHHHHHHHHHHhCCCc
Confidence            1224444444443322                                          2334567889999999999999


Q ss_pred             CCCCCHHHHHH
Q 044888          101 CDRPQMGDVLC  111 (154)
Q Consensus       101 ~~RP~~~~v~~  111 (154)
                      ++||++.++++
T Consensus       269 ~~Rps~~~ll~  279 (289)
T 1x8b_A          269 ERRPSAMALVK  279 (289)
T ss_dssp             GGSCCHHHHHT
T ss_pred             ccCCCHHHHhh
Confidence            99999999975

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.74  E-value=8.9e-18  Score=122.30  Aligned_cols=108  Identities=23%  Similarity=0.309  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC--cceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ....++.|++.||.|||+   .+++|+||++.||+++.++.+|++|||++......  ........|+..+++||.+.+ 
T Consensus       110 ~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  186 (305)
T 2wtk_C          110 QAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGL  186 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCc
Confidence            356789999999999994   56999999999999999999999999999765431  111122345555555554322 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                  ..+..++..+.+++.+||+.||.+||++.++++.
T Consensus       187 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          187 DTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             SCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             ccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence                                                        1233567788999999999999999999999864

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.74  E-value=2.4e-18  Score=129.53  Aligned_cols=107  Identities=22%  Similarity=0.233  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+||+|||+++.............|+..|++||.+.+    
T Consensus       141 ~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  217 (373)
T 2r5t_A          141 ARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYD  217 (373)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCC
Confidence            3567899999999999   456999999999999999999999999999764332223334567777777776543    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                             ..+...+..+.+++.+||+.||.+||++.+.+..
T Consensus       218 ~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~  290 (373)
T 2r5t_A          218 RTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFME  290 (373)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHH
T ss_pred             chhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHH
Confidence                                                   2234567788999999999999999998644433

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.73  E-value=3.2e-18  Score=124.07  Aligned_cols=106  Identities=22%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK---   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---   79 (154)
                      ...++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............++..+++||.+.+.   
T Consensus       102 ~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  178 (288)
T 1ob3_A          102 AKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKY  178 (288)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCCCCC
Confidence            56789999999999994   569999999999999999999999999987654321111222344444444433210   


Q ss_pred             ----------------------------------------------------------------------CCcchHHHHH
Q 044888           80 ----------------------------------------------------------------------IDPGCFKTFT   89 (154)
Q Consensus        80 ----------------------------------------------------------------------~~~~~~~~~~   89 (154)
                                                                                            .....+.++.
T Consensus       179 ~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (288)
T 1ob3_A          179 STTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGI  258 (288)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHH
Confidence                                                                                  0012456778


Q ss_pred             HHHHHhhccCCCCCCCHHHHHH
Q 044888           90 DIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        90 ~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +++.+||+.||++|||+.|+++
T Consensus       259 ~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          259 DLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHcCCCcccCCCHHHHhc
Confidence            9999999999999999999875

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.73  E-value=3.4e-18  Score=125.72  Aligned_cols=71  Identities=25%  Similarity=0.271  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~   76 (154)
                      ...++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+
T Consensus       110 ~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~  180 (317)
T 2pmi_A          110 VKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVL  180 (317)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHh
Confidence            45678899999999994   569999999999999999999999999997654322222223445555555543

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.73  E-value=4.6e-18  Score=125.63  Aligned_cols=106  Identities=25%  Similarity=0.269  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++.............|+..+++||.+.+    
T Consensus       123 ~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  199 (327)
T 3a62_A          123 ACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHN  199 (327)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCC
Confidence            45688999999999994   56999999999999999999999999998764432222233456677777665532    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~  111 (154)
                                                             ..+...+..+.+++.+||+.||.+||     ++.++++
T Consensus       200 ~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          200 RAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             CcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence                                                   22344567889999999999999999     6667654

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.73  E-value=4.1e-19  Score=127.89  Aligned_cols=113  Identities=20%  Similarity=0.286  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCC--CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGT--RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~--~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ..+.++.|++.||.|||+..  ..+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+ 
T Consensus       112 ~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  191 (279)
T 2w5a_A          112 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRM  191 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHHhccC
Confidence            35788999999999999432  123999999999999999999999999998765432111111223333333333211 


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ..+...+.++.+++.+||+.||++||++.||++.+.
T Consensus       192 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~  270 (279)
T 2w5a_A          192 SYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPL  270 (279)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence                                                       233456788999999999999999999999987553

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.73  E-value=2.8e-18  Score=126.33  Aligned_cols=105  Identities=20%  Similarity=0.242  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++ .++.+||+|||++.......  .....|+..+++||.+.+  
T Consensus       150 ~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~  224 (320)
T 3a99_A          150 LARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV--YTDFDGTRVYSPPEWIRYHR  224 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSC--BCCCCSCGGGSCHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeCCCCCEEEeeCcccccccccc--ccCCCCCccCCChHHhccCC
Confidence            356789999999999994   5599999999999999 77899999999987765421  112345555666554321  


Q ss_pred             ------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                          ..+...+.++.+++.+||+.||++||++.+|++
T Consensus       225 ~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          225 YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCccchHHhHHHHHHHHHHCCCCCCChhhhhcccccccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                                122345678999999999999999999999975

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.73  E-value=4.3e-18  Score=123.32  Aligned_cols=106  Identities=25%  Similarity=0.312  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      ...++.|++.||.|||+   .+++|+||++.||+++. ++.+||+|||++..............|+..+++||.+.    
T Consensus       124 ~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  200 (295)
T 2clq_A          124 IGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPR  200 (295)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCC
Confidence            45678999999999994   56999999999999987 88999999999876543211111222333333333221    


Q ss_pred             --------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 --------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 --------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  ...+...+.++.+++.+||+.||++||++.+++.
T Consensus       201 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          201 GYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                                                        1233456788999999999999999999999974

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.73  E-value=3e-18  Score=127.82  Aligned_cols=104  Identities=30%  Similarity=0.367  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      .+..++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++......    ....|+..+++||.+.    
T Consensus       155 ~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~----~~~~gt~~y~aPE~~~~~~~  227 (348)
T 1u5q_A          155 EIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----NSFVGTPYWMAPEVILAMDE  227 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB----CCCCSCGGGCCHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC----CcccCCcceeCHhhhccccC
Confidence            356789999999999995   55999999999999999999999999999765432    1234666666666541    


Q ss_pred             C--------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 G--------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ~--------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      +                                            ..+...+..+.+++..||+.||++||++.++++.
T Consensus       228 ~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          228 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence            1                                            0122456778999999999999999999999754

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.73  E-value=5e-18  Score=124.17  Aligned_cols=107  Identities=27%  Similarity=0.307  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+   
T Consensus       126 ~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  202 (314)
T 3com_A          126 EIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  202 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCB
T ss_pred             HHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCC
Confidence            357789999999999994   56999999999999999999999999998765443222223345555555554322   


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 ..+...+..+.+++..||+.||.+||++.++++
T Consensus       203 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          203 NCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence                                                       012234678999999999999999999999975

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.73  E-value=3.9e-18  Score=125.84  Aligned_cols=108  Identities=28%  Similarity=0.239  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ....++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++.......  .......|+..+++||.+.+ 
T Consensus       106 ~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  182 (323)
T 3tki_A          106 DAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRR  182 (323)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccC
Confidence            45788999999999999   4569999999999999999999999999997543211  11112345555665554422 


Q ss_pred             ----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 ----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                    ......+..+.+++.+||+.||++||++.|+++.
T Consensus       183 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          183 EFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence                                                          0012356778899999999999999999999753

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=126.41  Aligned_cols=104  Identities=26%  Similarity=0.314  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||++...... .......|+..|++||.+.+    
T Consensus       117 ~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~~~  192 (384)
T 4fr4_A          117 VKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE-TQITTMAGTKPYMAPEMFSSRKGA  192 (384)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT-CCBCCCCSCGGGCCGGGTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCC-CceeccCCCccccCCeeeccCCCC
Confidence            4678999999999999   456999999999999999999999999999876542 22234567888888877631    


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-HHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-MGDVL  110 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-~~~v~  110 (154)
                                                                   .++...+..+.+++..||+.||.+||+ +.+|.
T Consensus       193 ~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          193 GYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             CCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence                                                         123345678889999999999999998 66554

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.73  E-value=7.5e-18  Score=125.53  Aligned_cols=101  Identities=26%  Similarity=0.268  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++.............|+..|++||.+.+    
T Consensus       112 ~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  188 (345)
T 3a8x_A          112 ARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYG  188 (345)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCC
Confidence            46789999999999994   56999999999999999999999999999764332222233456666666665433    


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQM  106 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~  106 (154)
                                                                      ..+...+.++.+++.+||+.||.+||++
T Consensus       189 ~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          189 FSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             hHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence                                                            1123345678899999999999999996

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.73  E-value=8e-18  Score=129.93  Aligned_cols=71  Identities=23%  Similarity=0.255  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++...... ......|+..|++||.+.
T Consensus       166 ~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~  236 (464)
T 3ttj_A          166 MSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVIL  236 (464)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCCC-----CC-CC----CCCTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCc-ccCCCcccccccCHHHHc
Confidence            45789999999999995   559999999999999999999999999998765421 112234566666666543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.72  E-value=8.9e-18  Score=121.67  Aligned_cols=107  Identities=27%  Similarity=0.394  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK-   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-   79 (154)
                      ....++.|++.||.|||+.. .+++|+||+|.||+++ .++.+||+|||++.......  .....|+..+++||.+.+. 
T Consensus       130 ~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~  206 (290)
T 1t4h_A          130 VLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF--AKAVIGTPEFMAPEMYEEKY  206 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS--BEESCSSCCCCCGGGGGTCC
T ss_pred             HHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccc--cccccCCcCcCCHHHHhccC
Confidence            35678999999999999431 2399999999999997 78899999999987654432  2233466667776655431 


Q ss_pred             --------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 --------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 --------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  .+...+.++.+++..||+.||++||++.++++
T Consensus       207 ~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          207 DESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence                                                        11223467899999999999999999999985

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.72  E-value=2.9e-18  Score=126.51  Aligned_cols=107  Identities=14%  Similarity=0.084  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC--CCcEEEecCCCcccCCCCcceeeecccccccccCccccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE--NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~--~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (154)
                      ....++.|++.||.|||   ..+++|+||+|.||+++.  ++.+|++|||++....... ......|+..+++||.+.+.
T Consensus       103 ~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~  178 (321)
T 1tki_A          103 EIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD-NFRLLFTAPEYYAPEVHQHD  178 (321)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-EEEEEESCGGGSCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC-ccccccCChhhcCcHHhcCC
Confidence            35778999999999999   456999999999999987  7899999999998765432 22234566677776655430


Q ss_pred             -------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           80 -------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        80 -------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                 .+    ...+.++.+++.+||+.||.+|||+.|+++.
T Consensus       179 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h  258 (321)
T 1tki_A          179 VVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             EECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence                                                       01    1346788999999999999999999999863

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.72  E-value=2.2e-18  Score=127.02  Aligned_cols=117  Identities=22%  Similarity=0.246  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCCc--ceeeecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~   76 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.   +..+||+|||++.......  .......++..+++||.+
T Consensus       141 ~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  217 (327)
T 2yfx_A          141 DLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAF  217 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHh
Confidence            357889999999999994   56999999999999984   4569999999876432110  000111122223333221


Q ss_pred             c---------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           77 R---------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        77 ~---------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .                                             ...+..++..+.+++..||+.||.+||++.+|++
T Consensus       218 ~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  297 (327)
T 2yfx_A          218 MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILE  297 (327)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            1                                             1233456778999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 044888          112 NLGLAWRQQG  121 (154)
Q Consensus       112 ~L~~~~~~~~  121 (154)
                      .|+.+.....
T Consensus       298 ~l~~~~~~~~  307 (327)
T 2yfx_A          298 RIEYCTQDPD  307 (327)
T ss_dssp             HHHHHHHCHH
T ss_pred             HHHHHhcCHH
Confidence            9998876544

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.72  E-value=1.9e-18  Score=124.91  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      ....++.|++.||.|||+.  .+++|+||+|.||+++.++.+||+|||++........ .....|+..+++||.+.    
T Consensus       110 ~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~  186 (290)
T 3fme_A          110 ILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVA-KDIDAGCKPYMAPERINPELN  186 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC----------------CCCCCCSCHHHHSCCTT
T ss_pred             HHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCccccccccc-ccccCCCccccChhhcChhhc
Confidence            3567899999999999953  2699999999999999999999999999876544211 12234555666665531    


Q ss_pred             C----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           78 G----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        78 ~----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +                                              ......+.++.+++.+||+.||++|||+.|+++
T Consensus       187 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          187 QKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence            1                                              011245678999999999999999999999986

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.72  E-value=8.3e-18  Score=121.96  Aligned_cols=106  Identities=28%  Similarity=0.353  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--------------ceeeeccccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--------------TLCCYQSGTL   68 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--------------~~~~~~~g~~   68 (154)
                      .+.++.|++.||.|||+   .+++|+||+|.||+++.++.+|++|||++.......              .......|+.
T Consensus       118 ~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (303)
T 1zy4_A          118 YWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTA  194 (303)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------C
T ss_pred             HHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcc
Confidence            46789999999999995   559999999999999999999999999987654211              0111223444


Q ss_pred             ccccCccccC----------------------------------------------CCCcchHHHHHHHHHHhhccCCCC
Q 044888           69 GLVVDPFLRG----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCD  102 (154)
Q Consensus        69 ~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~  102 (154)
                      .+++||.+.+                                              ..+...+..+.+++..||+.||.+
T Consensus       195 ~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  274 (303)
T 1zy4_A          195 MYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNK  274 (303)
T ss_dssp             TTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGG
T ss_pred             cccCcccccCCCCCcchhhHHHHHHHHHHHHhccCCchhHHHHHHhccccccccCccccccchHHHHHHHHHHHhcCccc
Confidence            4555544321                                              122334566889999999999999


Q ss_pred             CCCHHHHHH
Q 044888          103 RPQMGDVLC  111 (154)
Q Consensus       103 RP~~~~v~~  111 (154)
                      ||++.++++
T Consensus       275 Rps~~~ll~  283 (303)
T 1zy4_A          275 RPGARTLLN  283 (303)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHhC
Confidence            999999975

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.72  E-value=3.9e-18  Score=125.95  Aligned_cols=106  Identities=22%  Similarity=0.154  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC----cEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW----VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      ....++.|++.||.|||   ..+++|+||+|.||+++.++    .+||+|||++....... ......|+..+++||.+.
T Consensus       115 ~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~  190 (326)
T 2y0a_A          115 EATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGN-EFKNIFGTPEFVAPEIVN  190 (326)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTS-CCCCCCSCTTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCC-ccccccCCcCcCCceeec
Confidence            45788999999999999   45699999999999998877    79999999997764321 112234666677766553


Q ss_pred             CC------------------------C-------------------C----cchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 GK------------------------I-------------------D----PGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 ~~------------------------~-------------------~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                      +.                        +                   +    ...+..+.+++..||+.||++|||+.+++
T Consensus       191 ~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l  270 (326)
T 2y0a_A          191 YEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL  270 (326)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            20                        0                   0    13456788999999999999999999998


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      +
T Consensus       271 ~  271 (326)
T 2y0a_A          271 Q  271 (326)
T ss_dssp             H
T ss_pred             c
Confidence            6

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.72  E-value=4.9e-18  Score=127.99  Aligned_cols=49  Identities=31%  Similarity=0.527  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      +..++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++..
T Consensus       111 ~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  159 (388)
T 3oz6_A          111 KQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKVADFGLSRSF  159 (388)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred             HHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence            45688999999999994   55999999999999999999999999999765

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.72  E-value=9.9e-18  Score=125.13  Aligned_cols=104  Identities=19%  Similarity=0.202  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.....   .....|+..|++||.+.+   
T Consensus       142 ~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~  215 (350)
T 1rdq_E          142 HARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGY  215 (350)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCC---cccccCCccccCHHHhcCCCC
Confidence            35678999999999999   455999999999999999999999999999876432   123356667777665533   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~~v~~  111 (154)
                                                              ..+...+.++.+++.+||+.||.+||+     +.+|..
T Consensus       216 ~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence                                                    233456788999999999999999998     777764

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.72  E-value=1.4e-17  Score=120.32  Aligned_cols=105  Identities=25%  Similarity=0.315  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||   ..+++|+||++.||+++.++.++++|||++.......  .....|+..+++||.+.+   
T Consensus       115 ~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~  189 (284)
T 2vgo_A          115 RSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR--RRTMCGTLDYLPPEMIEGKTH  189 (284)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC--BCCCCSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcccc--cccccCCCCcCCHHHhccCCC
Confidence            35678999999999999   5569999999999999999999999999886544311  112234455555544322   


Q ss_pred             ----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              ..+...+..+.+++..||+.||.+||++.++++
T Consensus       190 ~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          190 DEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence                                                    223445678899999999999999999999985

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.72  E-value=7.3e-18  Score=126.21  Aligned_cols=107  Identities=19%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc--EEEecCCCcccCCCCcceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV--AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ....++.|++.||.|||   ..+++||||+|.||+++.++.  +||+|||+++..... .......|+..|++||.+.+ 
T Consensus       117 ~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~  192 (361)
T 3uc3_A          117 EARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH-SQPKSTVGTPAYIAPEVLLRQ  192 (361)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC----------------CTTSCHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCcccccccc-CCCCCCcCCCCcCChhhhcCC
Confidence            35678999999999999   455999999999999987665  999999998743221 11112235555555544322 


Q ss_pred             -------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           79 -------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        79 -------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                                                                       +.....+..+.+++.+||+.||++|||+.|+
T Consensus       193 ~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  272 (361)
T 3uc3_A          193 EYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEI  272 (361)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred             CCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence                                                             1111346788999999999999999999999


Q ss_pred             HHH
Q 044888          110 LCN  112 (154)
Q Consensus       110 ~~~  112 (154)
                      ++.
T Consensus       273 l~h  275 (361)
T 3uc3_A          273 KTH  275 (361)
T ss_dssp             HTS
T ss_pred             HhC
Confidence            854

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.72  E-value=1.1e-17  Score=121.16  Aligned_cols=106  Identities=21%  Similarity=0.285  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe---cCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill---~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||++   +.++.+||+|||++....... ......|+..+++||.+.+
T Consensus       125 ~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~t~~y~aPE~~~~  200 (285)
T 3is5_A          125 YVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDE-HSTNAAGTALYMAPEVFKR  200 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----------CTTGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcc-cCcCcccccCcCChHHhcc
Confidence            356889999999999994   569999999999999   455789999999997654321 1122345555666554432


Q ss_pred             CC---------------------------------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 KI---------------------------------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ~~---------------------------------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      ..                                             ....+..+.+++.+||+.||++||++.||++
T Consensus       201 ~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          201 DVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             CCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            10                                             0124677889999999999999999999974

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.71  E-value=4.4e-18  Score=125.63  Aligned_cols=107  Identities=27%  Similarity=0.335  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+.  
T Consensus       125 ~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  201 (331)
T 4aaa_A          125 VVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVK  201 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCC
Confidence            356789999999999994   569999999999999999999999999997654322222223455555555544221  


Q ss_pred             -----------------------C--------------------------------------------------CcchHH
Q 044888           80 -----------------------I--------------------------------------------------DPGCFK   86 (154)
Q Consensus        80 -----------------------~--------------------------------------------------~~~~~~   86 (154)
                                             +                                                  .+..+.
T Consensus       202 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (331)
T 4aaa_A          202 YGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSE  281 (331)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCH
T ss_pred             cchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhH
Confidence                                   0                                                  012356


Q ss_pred             HHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           87 TFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        87 ~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+.+++.+||+.||++||++.|+++
T Consensus       282 ~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          282 VVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             HHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             HHHHHHHHHhccCcccCCCHHHHhc
Confidence            7889999999999999999999975

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.71  E-value=9e-18  Score=123.79  Aligned_cols=106  Identities=26%  Similarity=0.287  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK---   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---   79 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+.   
T Consensus       102 ~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  178 (324)
T 3mtl_A          102 VKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDY  178 (324)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCC
Confidence            4678899999999999   4569999999999999999999999999987654322222223445555555544220   


Q ss_pred             ----------------------C-------------------------------------------------CcchHHHH
Q 044888           80 ----------------------I-------------------------------------------------DPGCFKTF   88 (154)
Q Consensus        80 ----------------------~-------------------------------------------------~~~~~~~~   88 (154)
                                            +                                                 .+..+.++
T Consensus       179 ~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (324)
T 3mtl_A          179 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDG  258 (324)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHH
Confidence                                  0                                                 01234567


Q ss_pred             HHHHHHhhccCCCCCCCHHHHHH
Q 044888           89 TDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        89 ~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+++.+||+.||++|||+.|+++
T Consensus       259 ~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          259 ADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHcCcCcccCCCHHHHhc
Confidence            89999999999999999999985

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.71  E-value=5.5e-17  Score=121.31  Aligned_cols=118  Identities=17%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-----------CCcEEEecCCCcccCCC--Ccceeeeccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-----------NWVAKVSDLGLAKVGPN--MLTLCCYQSGTL   68 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-----------~~~~kl~dfg~~~~~~~--~~~~~~~~~g~~   68 (154)
                      .++.|+.|++.||.|||   ..+++||||||.||+++.           ++.+||+|||+++....  .........|+.
T Consensus       173 ~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~  249 (365)
T 3e7e_A          173 LVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETS  249 (365)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTT
T ss_pred             HHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCC
Confidence            36789999999999999   556999999999999988           89999999999965431  122333456788


Q ss_pred             ccccCccccCCC---------------------------------------CcchHHHHHHHHHHhhccCCCCC-CCHHH
Q 044888           69 GLVVDPFLRGKI---------------------------------------DPGCFKTFTDIAKKCLADRGCDR-PQMGD  108 (154)
Q Consensus        69 ~~~~~~~~~~~~---------------------------------------~~~~~~~~~~l~~~C~~~~p~~R-P~~~~  108 (154)
                      .|++||.+.+..                                       .......+.+++..|++.+|.+| |++.+
T Consensus       250 ~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~r~~~~~~  329 (365)
T 3e7e_A          250 GFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRLPHLDMWNEFFHVMLNIPDCHHLPSLDL  329 (365)
T ss_dssp             SCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEEECSCCTTCSSHHHHHHHHHHHHCCCCTTCCCCHHH
T ss_pred             CCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCceeechhccccCcHHHHHHHHHHHcCCCCCCcchHHHH
Confidence            888887765410                                       11236678899999999999998 68899


Q ss_pred             HHHHHHHHHHhcCC
Q 044888          109 VLCNLGLAWRQQGA  122 (154)
Q Consensus       109 v~~~L~~~~~~~~~  122 (154)
                      +.+.|+........
T Consensus       330 l~~~l~~~l~~~~~  343 (365)
T 3e7e_A          330 LRQKLKKVFQQHYT  343 (365)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999988876443

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.71  E-value=1.9e-17  Score=127.32  Aligned_cols=50  Identities=30%  Similarity=0.495  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++...
T Consensus       158 ~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          158 IKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             HHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence            46789999999999995   559999999999999999999999999998754

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.71  E-value=1.4e-17  Score=119.74  Aligned_cols=107  Identities=19%  Similarity=0.281  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.++++|||++....... ......++..+++||.+.+   
T Consensus       112 ~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  187 (276)
T 2h6d_A          112 EARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE-FLRTSCGSPNYAAPEVISGRLY  187 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--------------CCTGGGTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeecccccccCCCc-ceecccCCccccCHHHHcCCCC
Confidence            356789999999999994   559999999999999999999999999987654321 1112234555555555432   


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                               ..+...+..+.+++.+||+.||++||++.++++.
T Consensus       188 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          188 AGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             CCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence                                                     1223346788999999999999999999999863

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.71  E-value=2.2e-17  Score=121.74  Aligned_cols=103  Identities=26%  Similarity=0.321  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++.....   .....|+..+++||.+.+    
T Consensus       108 ~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~  181 (318)
T 1fot_A          108 AKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV---TYTLCGTPDYIAPEVVSTKPYN  181 (318)
T ss_dssp             HHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC---BCCCCSCTTTCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc---cccccCCccccCHhHhcCCCCC
Confidence            4568899999999999   556999999999999999999999999999875432   223456777777665533    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~  111 (154)
                                                             ..+...+.++.+++.+||+.||.+||     ++.+|+.
T Consensus       182 ~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          182 KSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             cccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence                                                   22344567889999999999999999     8888863

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.71  E-value=8e-18  Score=123.69  Aligned_cols=106  Identities=25%  Similarity=0.328  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.+    
T Consensus       131 ~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  207 (326)
T 2x7f_A          131 IAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENP  207 (326)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhcccccc
Confidence            46789999999999994   56999999999999999999999999998765433222223345566666655420    


Q ss_pred             ----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                    ..+...+..+.+++..||+.||.+||++.++++
T Consensus       208 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          208 DATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             ---CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence                                                          011235678999999999999999999999976

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.71  E-value=2.3e-18  Score=127.18  Aligned_cols=107  Identities=18%  Similarity=0.175  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC---cEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW---VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||   ..+++|+||+|.||+++.++   .+||+|||+++.............|+..+++||.+.+
T Consensus       107 ~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~  183 (325)
T 3kn6_A          107 EASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQ  183 (325)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------
T ss_pred             HHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcC
Confidence            35678999999999999   45699999999999997655   7999999999866543322233345666666665432


Q ss_pred             ------------------------CC--------------------------C----cchHHHHHHHHHHhhccCCCCCC
Q 044888           79 ------------------------KI--------------------------D----PGCFKTFTDIAKKCLADRGCDRP  104 (154)
Q Consensus        79 ------------------------~~--------------------------~----~~~~~~~~~l~~~C~~~~p~~RP  104 (154)
                                              ++                          +    ...+.++.+++..||+.||.+||
T Consensus       184 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  263 (325)
T 3kn6_A          184 NGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRL  263 (325)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCC
T ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCC
Confidence                                    00                          0    12467889999999999999999


Q ss_pred             CHHHHHH
Q 044888          105 QMGDVLC  111 (154)
Q Consensus       105 ~~~~v~~  111 (154)
                      ++.+++.
T Consensus       264 t~~ell~  270 (325)
T 3kn6_A          264 KMSGLRY  270 (325)
T ss_dssp             CTTTSTT
T ss_pred             CHHHHhc
Confidence            9999863

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.71  E-value=7.4e-18  Score=125.85  Aligned_cols=107  Identities=23%  Similarity=0.173  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||+++....... ......|+..|++||.+.+   
T Consensus       161 ~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  237 (355)
T 1vzo_A          161 VQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDS  237 (355)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCC
Confidence            46788999999999994   5599999999999999999999999999876533211 1122345666666655432   


Q ss_pred             ----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHH
Q 044888           79 ----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMG  107 (154)
Q Consensus        79 ----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~  107 (154)
                                                                    ..+...+..+.+|+.+||+.||.+||     ++.
T Consensus       238 ~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~  317 (355)
T 1vzo_A          238 GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDAD  317 (355)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHH
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHH
Confidence                                                          12334567788999999999999999     888


Q ss_pred             HHHHH
Q 044888          108 DVLCN  112 (154)
Q Consensus       108 ~v~~~  112 (154)
                      ++++.
T Consensus       318 ell~h  322 (355)
T 1vzo_A          318 EIKEH  322 (355)
T ss_dssp             HHHTS
T ss_pred             HHHcC
Confidence            88754

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.71  E-value=2e-17  Score=122.99  Aligned_cols=73  Identities=27%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC----cceeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM----LTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~----~~~~~~~~g~~~~~~~~~~~   77 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++......    ........|+..+++||.+.
T Consensus       125 ~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  201 (351)
T 3mi9_A          125 EIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLL  201 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhc
Confidence            356889999999999994   56999999999999999999999999999765421    11122334566677776553

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.71  E-value=3.1e-17  Score=120.42  Aligned_cols=114  Identities=19%  Similarity=0.172  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe----cCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill----~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      +.+.++.|++.||.|||+   .+++|+||+|.||++    +.++.+||+|||+++....... .....|+..+++||.+.
T Consensus       113 ~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~  188 (319)
T 4euu_A          113 EFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ-FVSLYGTEEYLHPDMYE  188 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCC-BCCCCSCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCc-eeecccCCCccCHHHhh
Confidence            357789999999999994   569999999999998    7778899999999977644211 11223455555554331


Q ss_pred             ---------C----------------------------------------------------------------------
Q 044888           78 ---------G----------------------------------------------------------------------   78 (154)
Q Consensus        78 ---------~----------------------------------------------------------------------   78 (154)
                               .                                                                      
T Consensus       189 ~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  268 (319)
T 4euu_A          189 RAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVS  268 (319)
T ss_dssp             HHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTT
T ss_pred             hccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcc
Confidence                     0                                                                      


Q ss_pred             -CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHh
Q 044888           79 -KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQ  119 (154)
Q Consensus        79 -~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~  119 (154)
                       .........+.+++..||+.||++||++.|+++........
T Consensus       269 ~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~  310 (319)
T 4euu_A          269 CSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (319)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC-
T ss_pred             cccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhc
Confidence             01123466788999999999999999999999988865443

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.71  E-value=1.8e-17  Score=119.61  Aligned_cols=106  Identities=20%  Similarity=0.154  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc---EEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV---AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~---~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.   +||+|||.+........ .....|+..+++||.+.+
T Consensus       106 ~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~  181 (284)
T 3kk8_A          106 DASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-WHGFAGTPGYLSPEVLKK  181 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCB-CCCSCSCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCcc-ccCCCCCcCCcCchhhcC
Confidence            356789999999999994   55999999999999976554   99999999876554221 122345566666655432


Q ss_pred             C-----------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 K-----------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ~-----------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .                                               .....+.++.+++..||+.||++||++.|+++
T Consensus       182 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          182 DPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            0                                               01245678999999999999999999999986

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.71  E-value=5.6e-18  Score=123.48  Aligned_cols=108  Identities=19%  Similarity=0.241  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCCcce---eeecc---------c
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNMLTL---CCYQS---------G   66 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~~~~---~~~~~---------g   66 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.   ++.+||+|||++.........   ..+..         |
T Consensus       118 ~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~DiwslG~il~el~tg  194 (299)
T 3m2w_A          118 EASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEKYDKSCDMWSLGVIMYILLCG  194 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTCGGGGHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEEeccccccccccccCCchhhHHHHHHHHHHHHHC
Confidence            457889999999999994   55999999999999997   788999999999776542110   00000         1


Q ss_pred             cccc-----------ccCccccC--CCC----cchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           67 TLGL-----------VVDPFLRG--KID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        67 ~~~~-----------~~~~~~~~--~~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      ...+           +......+  ..+    ...+.++.+++..||+.||++||++.|+++.
T Consensus       195 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          195 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             SCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            0000           00000011  111    3457889999999999999999999999863

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.71  E-value=8.9e-18  Score=125.93  Aligned_cols=106  Identities=24%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC----cEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW----VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++    .+||+|||++....... ......|+..|++||.+.
T Consensus       116 ~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~  191 (361)
T 2yab_A          116 EATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGV-EFKNIFGTPEFVAPEIVN  191 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTC-CCCCCCSCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCC-ccccCCCCccEECchHHc
Confidence            356789999999999994   5699999999999998776    79999999998765422 122345777777777654


Q ss_pred             CC-------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 GK-------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 ~~-------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                      +.                                           ++    ...+..+.+++..||+.||++||++.|++
T Consensus       192 ~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l  271 (361)
T 2yab_A          192 YEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEAL  271 (361)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence            30                                           01    12356788999999999999999999997


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      +
T Consensus       272 ~  272 (361)
T 2yab_A          272 R  272 (361)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.71  E-value=7e-18  Score=124.52  Aligned_cols=106  Identities=23%  Similarity=0.215  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      +...++.|++.||.|||+   .+++|+||+|.||+++.   ++.+||+|||++........ .....|+..+++||.+.+
T Consensus       132 ~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~  207 (327)
T 3lm5_A          132 DVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACE-LREIMGTPEYLAPEILNY  207 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC----------CCCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccc-cccccCCcCccCCeeecC
Confidence            457889999999999994   56999999999999987   78999999999977643211 112345555665554432


Q ss_pred             -----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                     ......+..+.+++..||+.||++||++.++++
T Consensus       208 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          208 DPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence                                                           111245677899999999999999999999974

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.71  E-value=1.3e-17  Score=126.07  Aligned_cols=106  Identities=20%  Similarity=0.178  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC--CCcEEEecCCCcccCCCCcceeeecccccccccCccccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE--NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~--~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.  .+.+||+|||++........ .....|+..+++||.+.+.
T Consensus       150 ~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~  225 (387)
T 1kob_A          150 EVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI-VKVTTATAEFAAPEIVDRE  225 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC-EEEECSSGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEecccceecCCCcc-eeeeccCCCccCchhccCC
Confidence            357789999999999994   56999999999999974  46799999999987654321 2233567777777665430


Q ss_pred             -----------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 -----------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 -----------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                     .....+.++.+++..||+.||++||++.|+++
T Consensus       226 ~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          226 PVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence                                                           11235678899999999999999999999975

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.71  E-value=1.3e-17  Score=122.14  Aligned_cols=115  Identities=25%  Similarity=0.307  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc---ceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML---TLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ..+.++.|++.||.|||+   .+++|+||++.||+++.++.+||+|||++.......   .......|+..+++||.+.+
T Consensus       117 ~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  193 (311)
T 3ork_A          117 RAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARG  193 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcC
Confidence            357889999999999995   559999999999999999999999999997654321   11222346666776665533


Q ss_pred             C------------------------C-----------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHH-
Q 044888           79 K------------------------I-----------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVL-  110 (154)
Q Consensus        79 ~------------------------~-----------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~-  110 (154)
                      .                        +                       ....+.++.+++.+||+.||++||+..+++ 
T Consensus       194 ~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~  273 (311)
T 3ork_A          194 DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR  273 (311)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred             CCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence            0                        0                       112466789999999999999999766655 


Q ss_pred             HHHHHHHHh
Q 044888          111 CNLGLAWRQ  119 (154)
Q Consensus       111 ~~L~~~~~~  119 (154)
                      ..|......
T Consensus       274 ~~l~~~~~~  282 (311)
T 3ork_A          274 ADLVRVHNG  282 (311)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcC
Confidence            555555443

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.71  E-value=1.2e-17  Score=127.70  Aligned_cols=69  Identities=25%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc--EEEecCCCcccCCCCcceeeecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV--AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~   76 (154)
                      ....++.|++.||.|||+   .+++||||||.||+++.++.  +||+|||++.......   ....|+..|++||.+
T Consensus       201 ~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~---~~~~gt~~y~aPE~~  271 (429)
T 3kvw_A          201 LVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRV---YTYIQSRFYRAPEVI  271 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCC---CSSCSCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceEEeecccceecCCcc---cccCCCCCccChHHH
Confidence            356789999999999994   56999999999999998876  9999999987654321   122344555555443

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=121.72  Aligned_cols=105  Identities=19%  Similarity=0.259  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      .++.++.|++.||.|||+   .+++|+||++.||+++ .++.+||+|||++.......  .....|+..+++||.+.+  
T Consensus       140 ~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~  214 (312)
T 2iwi_A          140 PSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEP--YTDFDGTRVYSPPEWISRHQ  214 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSC--BCCCCSCTTTSCHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCc--ccccCCcccccCceeeecCC
Confidence            457789999999999994   5699999999999999 78999999999987664321  112234444554443321  


Q ss_pred             ------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                          ..+...+..+.+++.+||+.||++||++.|+++
T Consensus       215 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          215 YHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHHCCCCCCChHHHhhhccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                                223456778999999999999999999999985

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.71  E-value=1.1e-17  Score=124.53  Aligned_cols=107  Identities=22%  Similarity=0.215  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC----CcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN----WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~----~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ...++.|++.||.|||+   .+++||||+|.||++...    +.+||+|||+++.............|+..|++||.+.+
T Consensus       118 ~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~  194 (342)
T 2qr7_A          118 ASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLER  194 (342)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcC
Confidence            46789999999999994   569999999999998433    35999999999865443222233445555665554322


Q ss_pred             ------------------------C--------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 ------------------------K--------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 ------------------------~--------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                              +                          .....+.++.+++.+||+.||++||++.+
T Consensus       195 ~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~  274 (342)
T 2qr7_A          195 QGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAAL  274 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             CCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHH
Confidence                                    0                          11245778899999999999999999999


Q ss_pred             HHHH
Q 044888          109 VLCN  112 (154)
Q Consensus       109 v~~~  112 (154)
                      +++.
T Consensus       275 il~h  278 (342)
T 2qr7_A          275 VLRH  278 (342)
T ss_dssp             HTTS
T ss_pred             HhcC
Confidence            9853

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.70  E-value=1.5e-17  Score=123.98  Aligned_cols=69  Identities=28%  Similarity=0.341  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-------------------------CCcEEEecCCCcccCCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-------------------------NWVAKVSDLGLAKVGPNM   57 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-------------------------~~~~kl~dfg~~~~~~~~   57 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.                         ++.+||+|||++......
T Consensus       139 ~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~  215 (360)
T 3llt_A          139 IKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY  215 (360)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC
Confidence            5678999999999999   456999999999999975                         788999999999765432


Q ss_pred             cceeeecccccccccCcccc
Q 044888           58 LTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus        58 ~~~~~~~~g~~~~~~~~~~~   77 (154)
                      .   ....|+..+++||.+.
T Consensus       216 ~---~~~~gt~~y~aPE~~~  232 (360)
T 3llt_A          216 H---GSIINTRQYRAPEVIL  232 (360)
T ss_dssp             C---CSCCSCGGGCCHHHHT
T ss_pred             C---cCccCcccccCcHHHc
Confidence            1   1234566666666543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.70  E-value=1.2e-17  Score=126.41  Aligned_cols=105  Identities=24%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++ .++.+||+|||+++....... .....++..|++||.+.+.  
T Consensus       143 ~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~  218 (394)
T 4e7w_A          143 IKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEP-NVSYICSRYYRAPELIFGATN  218 (394)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC-CCSSCSCGGGCCHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCC-CcccccCcCccCHHHHcCCCC
Confidence            45688999999999994   5699999999999999 789999999999976543211 1123445556665544220  


Q ss_pred             -----------------------C------------------------------------------------CcchHHHH
Q 044888           80 -----------------------I------------------------------------------------DPGCFKTF   88 (154)
Q Consensus        80 -----------------------~------------------------------------------------~~~~~~~~   88 (154)
                                             +                                                +...+.++
T Consensus       219 ~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (394)
T 4e7w_A          219 YTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDA  298 (394)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHH
Confidence                                   0                                                11245678


Q ss_pred             HHHHHHhhccCCCCCCCHHHHHH
Q 044888           89 TDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        89 ~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+++.+||+.||.+||++.|+++
T Consensus       299 ~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          299 IDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             HHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHhCCChhhCCCHHHHhc
Confidence            89999999999999999999985

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.70  E-value=1.5e-17  Score=130.54  Aligned_cols=102  Identities=26%  Similarity=0.254  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.............|+..|++||.+.+    
T Consensus       291 ~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  367 (543)
T 3c4z_A          291 AIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYD  367 (543)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCC
Confidence            45678999999999994   56999999999999999999999999999876554333334467888888776643    


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                 .++...+..+.+++.+||+.||++||++.
T Consensus       368 ~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~  439 (543)
T 3c4z_A          368 FSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFR  439 (543)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCB
T ss_pred             hHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCcccCHHHHHHHHHhccCCHhHCCCCc
Confidence                                                       12334567889999999999999999763

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.70  E-value=1.3e-17  Score=125.48  Aligned_cols=106  Identities=18%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe--cCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL--DENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill--~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||++  +.++.+||+|||+++....... .....|+..+++||.+.+.
T Consensus       188 ~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~  263 (373)
T 2x4f_A          188 DTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK-LKVNFGTPEFLAPEVVNYD  263 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB-CCCCCSSCTTCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc-cccccCCCcEeChhhccCC
Confidence            356789999999999994   559999999999999  5678899999999987654221 1223466667776654320


Q ss_pred             -------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 -------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 -------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 .+    ...+.++.+++.+||+.||.+||++.|+++
T Consensus       264 ~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          264 FVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                                                       00    234678899999999999999999999986

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.70  E-value=2.1e-17  Score=126.39  Aligned_cols=52  Identities=33%  Similarity=0.457  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ....++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++....
T Consensus       130 ~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          130 HIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKVCDFGLARTINS  181 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence            356789999999999995   5599999999999999999999999999987643

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.70  E-value=3.9e-17  Score=120.91  Aligned_cols=69  Identities=22%  Similarity=0.254  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe-------------------cCCCcEEEecCCCcccCCCCcceee
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL-------------------DENWVAKVSDLGLAKVGPNMLTLCC   62 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill-------------------~~~~~~kl~dfg~~~~~~~~~~~~~   62 (154)
                      +...++.|++.||.|||   ..+++|+||+|.||++                   +.++.+||+|||++.......   .
T Consensus       124 ~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~---~  197 (355)
T 2eu9_A          124 HVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHH---T  197 (355)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCC---C
T ss_pred             HHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccc---c
Confidence            35678999999999999   5569999999999999                   567889999999997654321   1


Q ss_pred             ecccccccccCccc
Q 044888           63 YQSGTLGLVVDPFL   76 (154)
Q Consensus        63 ~~~g~~~~~~~~~~   76 (154)
                      ...|+..+++||.+
T Consensus       198 ~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          198 TIVATRHYRPPEVI  211 (355)
T ss_dssp             SSCSCGGGCCHHHH
T ss_pred             CCcCCCcccCCeee
Confidence            23455666666554

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.70  E-value=2.6e-17  Score=124.54  Aligned_cols=115  Identities=20%  Similarity=0.190  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe----cCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill----~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||++    +.++.+||+|||+++....... .....|+..+++||.+.
T Consensus       113 ~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~-~~~~~gt~~y~aPE~~~  188 (396)
T 4eut_A          113 EFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ-FVSLYGTEEYLHPDMYE  188 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGG-SSCSSSCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCc-cccccCCccccCHHHhh
Confidence            357889999999999994   559999999999999    7778899999999977644211 11223444444444321


Q ss_pred             ------------------------------C-------------------------------------------------
Q 044888           78 ------------------------------G-------------------------------------------------   78 (154)
Q Consensus        78 ------------------------------~-------------------------------------------------   78 (154)
                                                    +                                                 
T Consensus       189 ~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  268 (396)
T 4eut_A          189 RAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVS  268 (396)
T ss_dssp             HHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTT
T ss_pred             ccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcc
Confidence                                          0                                                 


Q ss_pred             -CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhc
Q 044888           79 -KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQ  120 (154)
Q Consensus        79 -~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~  120 (154)
                       .........+.+++..||+.||++||++.++++.++.++...
T Consensus       269 ~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~~  311 (396)
T 4eut_A          269 CSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRM  311 (396)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTCE
T ss_pred             cccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhce
Confidence             011335678889999999999999999999999999988643

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.70  E-value=2.1e-17  Score=122.32  Aligned_cols=106  Identities=25%  Similarity=0.198  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC--cEEEecCCCcccCCCCc----ceeeecccccccccCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW--VAKVSDLGLAKVGPNML----TLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~--~~kl~dfg~~~~~~~~~----~~~~~~~g~~~~~~~~~~   76 (154)
                      ...++.|++.||.|||+   .+++|+||+|.||+++.++  .+||+|||++.......    .......|+..+++||.+
T Consensus       170 ~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  246 (345)
T 3hko_A          170 ISNIMRQIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVL  246 (345)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhh
Confidence            35689999999999995   5599999999999998765  89999999997543211    112234566667776655


Q ss_pred             cC------------------------CC---------------------C----cchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           77 RG------------------------KI---------------------D----PGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        77 ~~------------------------~~---------------------~----~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                      .+                        ..                     +    ...+..+.+++..||+.||.+||++.
T Consensus       247 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  326 (345)
T 3hko_A          247 NTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAM  326 (345)
T ss_dssp             TCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred             ccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHH
Confidence            32                        00                     0    12467899999999999999999999


Q ss_pred             HHHH
Q 044888          108 DVLC  111 (154)
Q Consensus       108 ~v~~  111 (154)
                      ++++
T Consensus       327 ~~l~  330 (345)
T 3hko_A          327 RALQ  330 (345)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9975

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.70  E-value=1.3e-17  Score=124.34  Aligned_cols=106  Identities=25%  Similarity=0.256  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.   ++.+||+|||+++...... ......|+..+++||.+.+
T Consensus       149 ~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~  224 (349)
T 2w4o_A          149 DAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV-LMKTVCGTPGYCAPEILRG  224 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCCC-----------------CGGGSCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc-ccccccCCCCccCHHHhcC
Confidence            357889999999999994   55999999999999975   7899999999987654321 1112345555555554432


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                      +.....+.++.+++.+||+.||++||++.+++
T Consensus       225 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l  304 (349)
T 2w4o_A          225 CAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQAL  304 (349)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred             CCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence                                                            01123567889999999999999999999997


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      +
T Consensus       305 ~  305 (349)
T 2w4o_A          305 Q  305 (349)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.70  E-value=7.1e-18  Score=124.59  Aligned_cols=107  Identities=21%  Similarity=0.160  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-----CCCcEEEecCCCcccCCCCcceeeecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-----ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-----~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~   76 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++     ..+.+||+|||++..............|+..+++||.+
T Consensus       133 ~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~  209 (329)
T 3gbz_A          133 VIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEIL  209 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHh
Confidence            356789999999999995   5599999999999994     45569999999987654332222233445556665544


Q ss_pred             cCC-------------------------CC-------------------------------------------------c
Q 044888           77 RGK-------------------------ID-------------------------------------------------P   82 (154)
Q Consensus        77 ~~~-------------------------~~-------------------------------------------------~   82 (154)
                      .+.                         +.                                                 .
T Consensus       210 ~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (329)
T 3gbz_A          210 LGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGA  289 (329)
T ss_dssp             TTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGG
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhccc
Confidence            320                         00                                                 0


Q ss_pred             chHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           83 GCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        83 ~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      ..+.++.+++.+||+.||++|||+.|+++
T Consensus       290 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          290 LLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             GSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence            03467789999999999999999999974

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.70  E-value=1.5e-17  Score=124.64  Aligned_cols=107  Identities=20%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC---CcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN---WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~---~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.+   +.+||+|||++....... ......|+..|++||.+.+
T Consensus       129 ~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~  204 (362)
T 2bdw_A          129 DASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE-AWHGFAGTPGYLSPEVLKK  204 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCC-SCCCSCSCTTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCc-ccccCCCCccccCHHHHcc
Confidence            356789999999999994   569999999999999765   459999999997765422 1223456777777766543


Q ss_pred             C-------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 K-------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ~-------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .                                           ++    ...+.++.+++.+||+.||++||++.++++
T Consensus       205 ~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          205 DPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            0                                           01    134678899999999999999999999874


Q ss_pred             H
Q 044888          112 N  112 (154)
Q Consensus       112 ~  112 (154)
                      .
T Consensus       285 h  285 (362)
T 2bdw_A          285 V  285 (362)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.70  E-value=3e-17  Score=118.06  Aligned_cols=106  Identities=20%  Similarity=0.154  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe---cCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill---~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||++   +.++.++++|||++....... ......|+..+++||.+.+
T Consensus       107 ~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE~~~~  182 (277)
T 3f3z_A          107 DAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK-MMRTKVGTPYYVSPQVLEG  182 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS-CBCCCCSCTTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc-chhccCCCCCccChHHhcc
Confidence            357889999999999994   559999999999999   778899999999987654321 1122345556666654432


Q ss_pred             C------------------------------------------CCc----chHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 K------------------------------------------IDP----GCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ~------------------------------------------~~~----~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .                                          .+.    ..+..+.+++..||+.||++||++.++++
T Consensus       183 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          183 LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE  261 (277)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0                                          111    34678899999999999999999999985

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.70  E-value=4.2e-17  Score=117.10  Aligned_cols=107  Identities=28%  Similarity=0.235  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ....++.|++.||.|||+   .+++|+||++.||+++.++.+|++|||.+........  ......|+..+++||.+.+ 
T Consensus       106 ~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  182 (276)
T 2yex_A          106 DAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRR  182 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCS
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcC
Confidence            357889999999999994   5699999999999999999999999999875432110  1112234555555554432 


Q ss_pred             ----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                    ......+..+.+++..||+.||++||++.++++
T Consensus       183 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          183 EFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence                                                          001234678889999999999999999999975

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.70  E-value=4.2e-17  Score=126.33  Aligned_cols=107  Identities=24%  Similarity=0.254  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec---CCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~---~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++||||+|.||+++   .++.+||+|||++....... ......|+..|++||.+.+
T Consensus       122 ~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~  197 (486)
T 3mwu_A          122 DAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT-KMKDRIGTAYYIAPEVLRG  197 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-----CCTTGGGGCCGGGGGS
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC-ccCCCcCCCCCCCHHHhCC
Confidence            356789999999999994   5599999999999995   45679999999997664421 2223457788888887655


Q ss_pred             CC----------------------------------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           79 KI----------------------------------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        79 ~~----------------------------------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      .+                                              ....+.++.+++.+||+.||.+|||+.++++.
T Consensus       198 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          198 TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            11                                              02346678999999999999999999999863

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.70  E-value=2.8e-17  Score=122.92  Aligned_cols=107  Identities=22%  Similarity=0.261  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~   78 (154)
                      +...++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.........   .....|+..+++||.+.+
T Consensus       129 ~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  205 (364)
T 3qyz_A          129 HICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLN  205 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcC
Confidence            356789999999999994   56999999999999999999999999999766432111   112345666666664321


Q ss_pred             -------------------------CCC--------------------------------------------------cc
Q 044888           79 -------------------------KID--------------------------------------------------PG   83 (154)
Q Consensus        79 -------------------------~~~--------------------------------------------------~~   83 (154)
                                               +++                                                  +.
T Consensus       206 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (364)
T 3qyz_A          206 SKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPN  285 (364)
T ss_dssp             BCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTT
T ss_pred             CCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCC
Confidence                                     000                                                  12


Q ss_pred             hHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           84 CFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        84 ~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+.++.+++.+||+.||++|||+.|+++
T Consensus       286 ~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          286 ADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            3467889999999999999999999985

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.70  E-value=2.3e-17  Score=125.82  Aligned_cols=106  Identities=25%  Similarity=0.228  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC---CcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN---WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~---~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++||||+|.||+++.+   ..+||+|||+++...... ......|+..|++||.+.+
T Consensus       240 ~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~  315 (419)
T 3i6u_A          240 TCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS-LMRTLCGTPTYLAPEVLVS  315 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC------------CTTCCTTTTC-
T ss_pred             HHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCcceEEEeecccceecCCCc-cccccCCCCCccCceeeec
Confidence            356789999999999995   559999999999999654   459999999998765421 2223457777888876531


Q ss_pred             ---------------------------CC--------------------C----cchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 ---------------------------KI--------------------D----PGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ---------------------------~~--------------------~----~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                 ++                    .    ...+..+.+++.+||+.||++||++.
T Consensus       316 ~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  395 (419)
T 3i6u_A          316 VGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE  395 (419)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHH
Confidence                                       00                    0    12466889999999999999999999


Q ss_pred             HHHH
Q 044888          108 DVLC  111 (154)
Q Consensus       108 ~v~~  111 (154)
                      |+++
T Consensus       396 e~l~  399 (419)
T 3i6u_A          396 EALR  399 (419)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9975

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.69  E-value=4.5e-17  Score=120.67  Aligned_cols=106  Identities=25%  Similarity=0.228  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      .+..++.|++.||.|||+  ..+++|+||+|.||+++.++.+||+|||.+......  ......|+..+++||.+.+   
T Consensus       152 ~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  227 (348)
T 2pml_X          152 VIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNESS  227 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSCCC
T ss_pred             HHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEcCCCcEEEeccccccccccc--cccCCCCCcCccCchhhcCCCC
Confidence            357889999999999995  156999999999999999999999999998765332  1111223333333333221   


Q ss_pred             -------------------------------------------CCC-------------------cchHHHHHHHHHHhh
Q 044888           79 -------------------------------------------KID-------------------PGCFKTFTDIAKKCL   96 (154)
Q Consensus        79 -------------------------------------------~~~-------------------~~~~~~~~~l~~~C~   96 (154)
                                                                 ..+                   ...+..+.+++..||
T Consensus       228 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  307 (348)
T 2pml_X          228 YNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFL  307 (348)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHC
T ss_pred             CCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHc
Confidence                                                       111                   346788999999999


Q ss_pred             ccCCCCCCCHHHHHH
Q 044888           97 ADRGCDRPQMGDVLC  111 (154)
Q Consensus        97 ~~~p~~RP~~~~v~~  111 (154)
                      +.||.+||++.|+++
T Consensus       308 ~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          308 RKNPAERITSEDALK  322 (348)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             cCChhhCCCHHHHhc
Confidence            999999999999975

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.69  E-value=4.2e-17  Score=119.94  Aligned_cols=69  Identities=23%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-------------------CCcEEEecCCCcccCCCCcceee
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-------------------NWVAKVSDLGLAKVGPNMLTLCC   62 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-------------------~~~~kl~dfg~~~~~~~~~~~~~   62 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.                   ++.+||+|||++.......   .
T Consensus       119 ~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~---~  192 (339)
T 1z57_A          119 HIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHH---S  192 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCC---C
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcccc---c
Confidence            356789999999999994   56999999999999987                   5679999999987654321   1


Q ss_pred             ecccccccccCccc
Q 044888           63 YQSGTLGLVVDPFL   76 (154)
Q Consensus        63 ~~~g~~~~~~~~~~   76 (154)
                      ...|+..+++||.+
T Consensus       193 ~~~gt~~y~aPE~~  206 (339)
T 1z57_A          193 TLVSTRHYRAPEVI  206 (339)
T ss_dssp             SSCSCGGGCCHHHH
T ss_pred             cccCCccccChHHh
Confidence            22345555555544

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.69  E-value=4e-17  Score=125.01  Aligned_cols=107  Identities=25%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-----CCcEEEecCCCcccCCCCc---ceeeecccccccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-----NWVAKVSDLGLAKVGPNML---TLCCYQSGTLGLVVD   73 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-----~~~~kl~dfg~~~~~~~~~---~~~~~~~g~~~~~~~   73 (154)
                      ..+.++.|++.||.|||+   .+++||||||.||+++.     ...+||+|||+++......   .......|+..+++|
T Consensus       119 ~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~AP  195 (432)
T 3p23_A          119 EPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAP  195 (432)
T ss_dssp             CHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCG
T ss_pred             hHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccCh
Confidence            356899999999999995   55999999999999943     3468899999997765321   122234577777777


Q ss_pred             ccccCC--------------------------------------------------CCcchHHHHHHHHHHhhccCCCCC
Q 044888           74 PFLRGK--------------------------------------------------IDPGCFKTFTDIAKKCLADRGCDR  103 (154)
Q Consensus        74 ~~~~~~--------------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~R  103 (154)
                      |.+.+.                                                  ........+.+++.+||+.||.+|
T Consensus       196 E~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  275 (432)
T 3p23_A          196 EMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKR  275 (432)
T ss_dssp             GGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGS
T ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccCccccccHHHHHHHHHHHhCCHhhC
Confidence            766420                                                  011234457899999999999999


Q ss_pred             CCHHHHHH
Q 044888          104 PQMGDVLC  111 (154)
Q Consensus       104 P~~~~v~~  111 (154)
                      |++.+|++
T Consensus       276 ps~~evl~  283 (432)
T 3p23_A          276 PSAKHVLK  283 (432)
T ss_dssp             CCHHHHHT
T ss_pred             CCHHHHHh
Confidence            99999983

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.69  E-value=2.8e-17  Score=123.74  Aligned_cols=105  Identities=17%  Similarity=0.109  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      ...++.|++.||.|||   ..+++||||+|.||+++ .++.+||+|||+++....... .....++..+++||.+.+.  
T Consensus       143 ~~~i~~qi~~aL~~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~  218 (383)
T 3eb0_A          143 ISIYIYQLFRAVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP-SVAYICSRFYRAPELMLGATE  218 (383)
T ss_dssp             HHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC-CCCCCCCSSCCCHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC-CcCcccCCCccCHHHhcCCCC
Confidence            4578999999999999   56699999999999997 678999999999986543211 1122344555555543220  


Q ss_pred             -----------------------------------------------------------------------CCcchHHHH
Q 044888           80 -----------------------------------------------------------------------IDPGCFKTF   88 (154)
Q Consensus        80 -----------------------------------------------------------------------~~~~~~~~~   88 (154)
                                                                                             .+...+.++
T Consensus       219 ~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (383)
T 3eb0_A          219 YTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLA  298 (383)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHH
T ss_pred             CCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHH
Confidence                                                                                   112245668


Q ss_pred             HHHHHHhhccCCCCCCCHHHHHH
Q 044888           89 TDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        89 ~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+++.+||+.||++|||+.|+++
T Consensus       299 ~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          299 IDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             HHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHccCChhhCCCHHHHhc
Confidence            89999999999999999999983

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.69  E-value=2e-17  Score=121.69  Aligned_cols=106  Identities=24%  Similarity=0.227  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC----cEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW----VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++    .+||+|||++........ .....|+..+++||.+.
T Consensus       116 ~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~gt~~y~aPE~~~  191 (321)
T 2a2a_A          116 EATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE-FKNIFGTPEFVAPEIVN  191 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCC-CCCCCSCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcCCEEEccCccceecCcccc-ccccCCCCCccCccccc
Confidence            457889999999999994   5699999999999998877    799999999977654211 12234566666665543


Q ss_pred             C-------------------------------------------CCC----cchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 G-------------------------------------------KID----PGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 ~-------------------------------------------~~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                      +                                           ..+    ...+..+.+++..||+.||++||++.|++
T Consensus       192 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l  271 (321)
T 2a2a_A          192 YEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEAL  271 (321)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHH
T ss_pred             CCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence            2                                           001    23456788999999999999999999997


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      .
T Consensus       272 ~  272 (321)
T 2a2a_A          272 R  272 (321)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.69  E-value=4.9e-17  Score=120.96  Aligned_cols=107  Identities=20%  Similarity=0.141  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-CCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      ...++.|++.||.|||.. ..+++|+||+|.||+++. ++.+||+|||++........ .....|+..+++||.+.+.  
T Consensus       131 ~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~  208 (360)
T 3e3p_A          131 IKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEP-NVAYICSRYYRAPELIFGNQH  208 (360)
T ss_dssp             HHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSC-CCSTTSCGGGCCHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCC-cccccCCcceeCHHHHcCCCC
Confidence            456889999999999933 345999999999999996 89999999999987654221 1223456666666654220  


Q ss_pred             -----------------------C---------------------------------------------------CcchH
Q 044888           80 -----------------------I---------------------------------------------------DPGCF   85 (154)
Q Consensus        80 -----------------------~---------------------------------------------------~~~~~   85 (154)
                                             +                                                   ....+
T Consensus       209 ~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (360)
T 3e3p_A          209 YTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDA  288 (360)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhcccc
Confidence                                   0                                                   01135


Q ss_pred             HHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           86 KTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        86 ~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .++.+|+.+||+.||.+|||+.|+++
T Consensus       289 ~~~~~li~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          289 KEAYDLLSALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHHHhccCccccCCHHHHhc
Confidence            68899999999999999999999985

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.69  E-value=1.5e-17  Score=125.01  Aligned_cols=38  Identities=45%  Similarity=0.511  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW   41 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~   41 (154)
                      ....++.|++.||.|||+.  .+++||||||.||+++.++
T Consensus       147 ~~~~i~~qi~~aL~~lH~~--~givHrDikp~NIll~~~~  184 (397)
T 1wak_A          147 CVKKIIQQVLQGLDYLHTK--CRIIHTDIKPENILLSVNE  184 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--TCEECCCCSGGGEEECCCH
T ss_pred             HHHHHHHHHHHHHHHHHHh--CCEecCCCCHHHeeEeccc
Confidence            3567899999999999953  1699999999999998765

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.69  E-value=3.3e-17  Score=122.90  Aligned_cols=70  Identities=23%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~   76 (154)
                      ...++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||+++....... .....|+..+++||.+
T Consensus       129 ~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~  198 (371)
T 2xrw_A          129 MSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM-MTPYVVTRYYRAPEVI  198 (371)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCCCC-----------------CTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEEEeecccccccccc-cCCceecCCccCHHHh
Confidence            46789999999999994   5699999999999999999999999999976543211 1122345555555543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.69  E-value=2.7e-17  Score=121.09  Aligned_cols=52  Identities=27%  Similarity=0.319  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~   56 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++ .+||+|||+++....
T Consensus       131 ~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~  183 (330)
T 3nsz_A          131 DIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  183 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence            356789999999999994   5599999999999999766 899999999976543

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.69  E-value=3.1e-17  Score=125.11  Aligned_cols=105  Identities=21%  Similarity=0.130  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.+ +.+||+|||+++....... .....|+..|++||.+.+   
T Consensus       158 ~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~  233 (420)
T 1j1b_A          158 VKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP-NVSYICSRYYRAPELIFGATD  233 (420)
T ss_dssp             HHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC-CCSCCSCTTSCCHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCC-ceeeeeCCCcCCHHHHcCCCC
Confidence            4578999999999999   5669999999999999965 5689999999986543211 112234555555554422   


Q ss_pred             ----------------------C------------------------------------------------CCcchHHHH
Q 044888           79 ----------------------K------------------------------------------------IDPGCFKTF   88 (154)
Q Consensus        79 ----------------------~------------------------------------------------~~~~~~~~~   88 (154)
                                            .                                                +++..+.++
T Consensus       234 ~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  313 (420)
T 1j1b_A          234 YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEA  313 (420)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHH
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHH
Confidence                                  0                                                011235678


Q ss_pred             HHHHHHhhccCCCCCCCHHHHHH
Q 044888           89 TDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        89 ~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+|+.+||+.||.+||++.|+++
T Consensus       314 ~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          314 IALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHhccCChhHCCCHHHHhC
Confidence            99999999999999999999974

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.69  E-value=3e-17  Score=129.50  Aligned_cols=106  Identities=25%  Similarity=0.283  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++....... .....|+..|++||.+.+   
T Consensus       287 ~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~-~~~~~GT~~Y~APEvl~~~~~  362 (576)
T 2acx_A          287 RAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT-IKGRVGTVGYMAPEVVKNERY  362 (576)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC-EECCCSCGGGCCHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEecccceecccCcc-ccccCCCccccCHHHHcCCCC
Confidence            356789999999999994   5699999999999999999999999999987654322 223467777877776543   


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDV  109 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v  109 (154)
                                                                  .++...+.++.+|+.+||+.||.+||     ++.||
T Consensus       363 ~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~ei  442 (576)
T 2acx_A          363 TFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREV  442 (576)
T ss_dssp             SSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHH
T ss_pred             CccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHH
Confidence                                                        12234567889999999999999999     67777


Q ss_pred             HH
Q 044888          110 LC  111 (154)
Q Consensus       110 ~~  111 (154)
                      ++
T Consensus       443 l~  444 (576)
T 2acx_A          443 KE  444 (576)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.69  E-value=4.5e-17  Score=119.23  Aligned_cols=107  Identities=21%  Similarity=0.253  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .+..++.|++.||.|||+   .+++|+||+|.||+++. +.+||+|||++........  ......|+..+++||.+.+ 
T Consensus       128 ~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  203 (313)
T 3cek_A          128 ERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDM  203 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhc
Confidence            457889999999999995   56999999999999965 7899999999976543211  1112234555555554321 


Q ss_pred             --------------------------------------------------------CCCcchHHHHHHHHHHhhccCCCC
Q 044888           79 --------------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCD  102 (154)
Q Consensus        79 --------------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~  102 (154)
                                                                              ..+...+..+.+++..||+.||++
T Consensus       204 ~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  283 (313)
T 3cek_A          204 SSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQ  283 (313)
T ss_dssp             C----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTT
T ss_pred             ccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCcccchHHHHHHHHHHccCCccc
Confidence                                                                    122334678999999999999999


Q ss_pred             CCCHHHHHHH
Q 044888          103 RPQMGDVLCN  112 (154)
Q Consensus       103 RP~~~~v~~~  112 (154)
                      ||++.++++.
T Consensus       284 Rps~~ell~h  293 (313)
T 3cek_A          284 RISIPELLAH  293 (313)
T ss_dssp             SCCHHHHHTS
T ss_pred             CcCHHHHhcC
Confidence            9999999854

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.69  E-value=2.6e-17  Score=122.88  Aligned_cols=70  Identities=27%  Similarity=0.275  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec------CCCcEEEecCCCcccCCCCcceeeecccccccccCcc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD------ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPF   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~------~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~   75 (154)
                      ....++.|++.||.|||+.  .+++|+||+|.||+++      ..+.+||+|||++.......+   ...|+..+++||.
T Consensus       132 ~~~~i~~qi~~aL~~lH~~--~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~t~~y~aPE~  206 (373)
T 1q8y_A          132 YVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYT---NSIQTREYRSPEV  206 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCC---SCCSCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc--CCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCC---CCCCCccccCcHH
Confidence            3567899999999999953  1699999999999994      345799999999976543211   1234455555544


Q ss_pred             c
Q 044888           76 L   76 (154)
Q Consensus        76 ~   76 (154)
                      +
T Consensus       207 ~  207 (373)
T 1q8y_A          207 L  207 (373)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.69  E-value=4.7e-17  Score=119.49  Aligned_cols=106  Identities=25%  Similarity=0.255  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++....... ......|+..+++||.+.+   
T Consensus       121 ~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  196 (326)
T 1blx_A          121 TIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQSSY  196 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGG-GGCCCCCCCTTCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCCCEEEecCcccccccCCC-CccccccccceeCHHHHhcCCC
Confidence            356789999999999994   569999999999999999999999999987654321 1111223333444333221   


Q ss_pred             -------------------------------------------------------------------CCCcchHHHHHHH
Q 044888           79 -------------------------------------------------------------------KIDPGCFKTFTDI   91 (154)
Q Consensus        79 -------------------------------------------------------------------~~~~~~~~~~~~l   91 (154)
                                                                                         ......+..+.++
T Consensus       197 ~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (326)
T 1blx_A          197 ATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDL  276 (326)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHH
Confidence                                                                               0112356678899


Q ss_pred             HHHhhccCCCCCCCHHHHHH
Q 044888           92 AKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        92 ~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +.+||+.||++||++.+++.
T Consensus       277 i~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          277 LLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             HHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHcCCCcccCCCHHHHhc
Confidence            99999999999999999974

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.69  E-value=2e-17  Score=121.82  Aligned_cols=106  Identities=24%  Similarity=0.356  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----C
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----G   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~   78 (154)
                      ..+++.|++.||.|||+.  .+++|+||++.||+++.++.+||+|||++........ .....|+..+++||.+.    +
T Consensus       127 ~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~  203 (327)
T 3aln_A          127 LGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA-KTRDAGCRPYMAPERIDPSASR  203 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCceecccccc-cccCCCCccccCceeeccccCc
Confidence            567899999999999953  1699999999999999999999999999876543211 11123444444444431    0


Q ss_pred             -------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           79 -------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        79 -------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                                                                       ......+..+.+++..||+.||++||++.+|
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el  283 (327)
T 3aln_A          204 QGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKEL  283 (327)
T ss_dssp             --CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHH
Confidence                                                             0112467889999999999999999999999


Q ss_pred             HH
Q 044888          110 LC  111 (154)
Q Consensus       110 ~~  111 (154)
                      ++
T Consensus       284 l~  285 (327)
T 3aln_A          284 LK  285 (327)
T ss_dssp             TT
T ss_pred             Hh
Confidence            75

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.69  E-value=7.7e-17  Score=120.91  Aligned_cols=103  Identities=22%  Similarity=0.246  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++......+   ...++..+++||.+.+    
T Consensus       130 ~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~---~~~~t~~y~aPE~~~~~~~~  203 (367)
T 1cm8_A          130 IQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMT---GYVVTRWYRAPEVILNWMRY  203 (367)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCC---SSCSCGGGCCTHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEEEEeeecccccccccC---cCcCCCCcCCHHHHhCCCCC
Confidence            45788999999999994   5599999999999999999999999999987543221   2234555555554322    


Q ss_pred             ---------------------CC--------------------------------------------------CcchHHH
Q 044888           79 ---------------------KI--------------------------------------------------DPGCFKT   87 (154)
Q Consensus        79 ---------------------~~--------------------------------------------------~~~~~~~   87 (154)
                                           .+                                                  .+..+..
T Consensus       204 ~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (367)
T 1cm8_A          204 TQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPL  283 (367)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHH
T ss_pred             ChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHH
Confidence                                 00                                                  0123567


Q ss_pred             HHHHHHHhhccCCCCCCCHHHHHH
Q 044888           88 FTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        88 ~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +.+++.+||+.||++|||+.++++
T Consensus       284 ~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          284 AVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHccCChhHCCCHHHHhc
Confidence            889999999999999999999976

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.68  E-value=4.7e-17  Score=120.61  Aligned_cols=105  Identities=20%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      +...++.|++.||.|||+   .+++|+||+|.||+++.   ++.+||+|||++.......  .....++..+++||.+.+
T Consensus       129 ~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~t~~y~aPE~~~~  203 (336)
T 3fhr_A          129 EAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNA--LQTPCYTPYYVAPEVLGP  203 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCceEEEeccccceeccccc--cccCCCCcCccChhhhCC
Confidence            457889999999999995   56999999999999976   4559999999987654321  112233444444444321


Q ss_pred             ---------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 ---------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ---------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                         ......+..+.+++..||+.||++||++.
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  283 (336)
T 3fhr_A          204 EKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTIT  283 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHH
Confidence                                                               01124577899999999999999999999


Q ss_pred             HHHH
Q 044888          108 DVLC  111 (154)
Q Consensus       108 ~v~~  111 (154)
                      |+++
T Consensus       284 ell~  287 (336)
T 3fhr_A          284 QFMN  287 (336)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9986

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.68  E-value=2.4e-17  Score=123.49  Aligned_cols=106  Identities=25%  Similarity=0.236  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+|++|.||+++.++.++++|||++....... ......|+..|++||.+.+   
T Consensus       201 ~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~  276 (365)
T 2y7j_A          201 ETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE-KLRELCGTPGYLAPEILKCSMD  276 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEEecCcccccCCCc-ccccCCCCCCccChhhcccccc
Confidence            356789999999999994   569999999999999999999999999987765421 1223456666666664420   


Q ss_pred             -------------------------CCC-------------------------cchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 -------------------------KID-------------------------PGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 -------------------------~~~-------------------------~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                               ..+                         ...+..+.+++.+||+.||++||++.+
T Consensus       277 ~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  356 (365)
T 2y7j_A          277 ETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQ  356 (365)
T ss_dssp             TTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             ccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHH
Confidence                                     000                         123456889999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      +++
T Consensus       357 ll~  359 (365)
T 2y7j_A          357 ALQ  359 (365)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            975

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.68  E-value=5.8e-18  Score=123.15  Aligned_cols=107  Identities=21%  Similarity=0.249  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++..............|+..+++||.+.    
T Consensus       118 ~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  194 (302)
T 2j7t_A          118 QIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETM  194 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccC
Confidence            356789999999999994   5699999999999999999999999998643211111111122344444444321    


Q ss_pred             -C----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 -G----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 -~----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                       +                                              ..+...+..+.+++..||+.||++||++.+++
T Consensus       195 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll  274 (302)
T 2j7t_A          195 KDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLL  274 (302)
T ss_dssp             TSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHT
T ss_pred             CCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhCCCHHHHh
Confidence             0                                              11234567899999999999999999999986


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      +
T Consensus       275 ~  275 (302)
T 2j7t_A          275 E  275 (302)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.68  E-value=2.9e-17  Score=120.16  Aligned_cols=107  Identities=26%  Similarity=0.342  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+.  .+++|+||+|.||+++.++.+||+|||++........ .....++..+++||.+.+   
T Consensus       125 ~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  201 (318)
T 2dyl_A          125 ILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA-KDRSAGCAAYMAPERIDPPDP  201 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSCEEECCCTTC---------------CCTTCCHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcc-ccccCCCccccChhhcccccc
Confidence            3567899999999999952  2699999999999999999999999999866533211 112234444444444310   


Q ss_pred             -------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           79 -------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        79 -------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                                                                       +.....+.++.+++..||+.||.+||++.++
T Consensus       202 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  281 (318)
T 2dyl_A          202 TKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKL  281 (318)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred             cccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence                                                             0012356789999999999999999999999


Q ss_pred             HH
Q 044888          110 LC  111 (154)
Q Consensus       110 ~~  111 (154)
                      ++
T Consensus       282 l~  283 (318)
T 2dyl_A          282 LE  283 (318)
T ss_dssp             TT
T ss_pred             hh
Confidence            85

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.68  E-value=1e-16  Score=120.59  Aligned_cols=54  Identities=30%  Similarity=0.284  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec--CCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--ENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~--~~~~~kl~dfg~~~~~~~   56 (154)
                      .+..++.|++.||.|||+. ..+++||||||.||+++  .++.+||+|||++.....
T Consensus       158 ~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~  213 (382)
T 2vx3_A          158 LTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQ  213 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTC
T ss_pred             HHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccc
Confidence            3567899999999999953 35799999999999994  467899999999976643

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.68  E-value=5.5e-17  Score=121.73  Aligned_cols=104  Identities=21%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||+++......   ....|+..+++||.+.+   
T Consensus       145 ~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~---~~~~~t~~y~aPE~~~~~~~  218 (371)
T 4exu_A          145 KIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEM---TGYVVTRWYRAPEVILSWMH  218 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECSTTCC-----------CTTCCCTTSCHHHHSCCSC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEEEEecCcccccccCc---CCcccCccccCHHHhcCCCC
Confidence            356789999999999994   569999999999999999999999999997654321   12234555555554322   


Q ss_pred             --------------------C--C--------------------------------------------------CcchHH
Q 044888           79 --------------------K--I--------------------------------------------------DPGCFK   86 (154)
Q Consensus        79 --------------------~--~--------------------------------------------------~~~~~~   86 (154)
                                          .  +                                                  .+..+.
T Consensus       219 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (371)
T 4exu_A          219 YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASP  298 (371)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCH
T ss_pred             CCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccCh
Confidence                                0  0                                                  012356


Q ss_pred             HHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           87 TFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        87 ~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+.+++.+||+.||++||++.|+++
T Consensus       299 ~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          299 QAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             HHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHHHHHHCCCChhhcCCHHHHhc
Confidence            7899999999999999999999975

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.68  E-value=3.7e-17  Score=125.14  Aligned_cols=106  Identities=28%  Similarity=0.309  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-------------CcEEEecCCCcccCCCCcc----eeeecc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-------------WVAKVSDLGLAKVGPNMLT----LCCYQS   65 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-------------~~~kl~dfg~~~~~~~~~~----~~~~~~   65 (154)
                      .++++.|++.||.|||+   .+++||||+|.||+++.+             ..+||+|||+++.......    ......
T Consensus       117 ~~~i~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~  193 (434)
T 2rio_A          117 PISLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPS  193 (434)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC-------------
T ss_pred             HHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCC
Confidence            35799999999999994   569999999999999754             4899999999987654211    111234


Q ss_pred             cccccccCccccC------------------------------CC--------------------------CcchHHHHH
Q 044888           66 GTLGLVVDPFLRG------------------------------KI--------------------------DPGCFKTFT   89 (154)
Q Consensus        66 g~~~~~~~~~~~~------------------------------~~--------------------------~~~~~~~~~   89 (154)
                      |+..+++||.+.+                              ..                          +...+.++.
T Consensus       194 gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  273 (434)
T 2rio_A          194 GTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEAT  273 (434)
T ss_dssp             -CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHHHHH
T ss_pred             CCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHHHHhcCCCCcccccccccccchHHHH
Confidence            6666666664421                              00                          112357889


Q ss_pred             HHHHHhhccCCCCCCCHHHHHH
Q 044888           90 DIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        90 ~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +++.+||+.||.+||++.+|++
T Consensus       274 ~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          274 DLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHhhCChhhCCCHHHHHh
Confidence            9999999999999999999975

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.68  E-value=4.3e-17  Score=120.97  Aligned_cols=51  Identities=31%  Similarity=0.457  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++....
T Consensus       113 ~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (353)
T 2b9h_A          113 HIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGLARIID  163 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence            356789999999999994   569999999999999999999999999997654

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.68  E-value=5.9e-17  Score=122.77  Aligned_cols=72  Identities=28%  Similarity=0.339  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe----cCCCcEEEecCCCcccCCCCc---ceeeecccccccccCcc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL----DENWVAKVSDLGLAKVGPNML---TLCCYQSGTLGLVVDPF   75 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill----~~~~~~kl~dfg~~~~~~~~~---~~~~~~~g~~~~~~~~~   75 (154)
                      ...++.|++.||.|||+   .+++||||||.||++    +.++.+||+|||+++......   .......|+..|++||.
T Consensus       130 ~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~  206 (405)
T 3rgf_A          130 VKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPEL  206 (405)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchh
Confidence            46789999999999995   559999999999999    677899999999997764321   11122345666666665


Q ss_pred             cc
Q 044888           76 LR   77 (154)
Q Consensus        76 ~~   77 (154)
                      +.
T Consensus       207 ~~  208 (405)
T 3rgf_A          207 LL  208 (405)
T ss_dssp             HT
T ss_pred             hc
Confidence            43

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.68  E-value=1.4e-17  Score=121.02  Aligned_cols=107  Identities=26%  Similarity=0.305  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-----eeeecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-----LCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-----~~~~~~g~~~~~~~~~~   76 (154)
                      .++.++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........     ......|+..+++||.+
T Consensus       122 ~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (303)
T 2vwi_A          122 TIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVM  198 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHh
Confidence            356789999999999994   5699999999999999999999999998765432100     01112233344443322


Q ss_pred             cC------------------------------------------------------CCCcchHHHHHHHHHHhhccCCCC
Q 044888           77 RG------------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCD  102 (154)
Q Consensus        77 ~~------------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~  102 (154)
                      .+                                                      ......+..+.+++..||+.||.+
T Consensus       199 ~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  278 (303)
T 2vwi_A          199 EQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEK  278 (303)
T ss_dssp             HHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGG
T ss_pred             ccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCChhh
Confidence            10                                                      011234567899999999999999


Q ss_pred             CCCHHHHHH
Q 044888          103 RPQMGDVLC  111 (154)
Q Consensus       103 RP~~~~v~~  111 (154)
                      ||++.++++
T Consensus       279 Rps~~~ll~  287 (303)
T 2vwi_A          279 RPTAAELLR  287 (303)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHhh
Confidence            999999975

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.68  E-value=7.4e-17  Score=117.63  Aligned_cols=105  Identities=25%  Similarity=0.285  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe---cCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill---~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||++   +.++.++++|||++.......  .....|+..+++||.+.+
T Consensus       107 ~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~  181 (304)
T 2jam_A          107 DASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI--MSTACGTPGYVAPEVLAQ  181 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBT--THHHHSCCCBCCTTTBSS
T ss_pred             HHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCc--cccccCCCCccChHHhcc
Confidence            356789999999999994   569999999999999   778899999999987654321  112235555666655432


Q ss_pred             -----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                     ......+..+.+++..||+.||++||++.++++
T Consensus       182 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          182 KPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                                                           111245678999999999999999999999985

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.67  E-value=6.2e-17  Score=125.64  Aligned_cols=105  Identities=28%  Similarity=0.305  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC---CcEEEecCCCcccCCCCcceeeecccccccccCccccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN---WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~---~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (154)
                      ...++.|++.||.|||+   .+++||||+|.||+++..   +.+||+|||++....... ......|+..|++||.+.+.
T Consensus       138 ~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~-~~~~~~gt~~y~aPE~l~~~  213 (494)
T 3lij_A          138 AAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK-KMKERLGTAYYIAPEVLRKK  213 (494)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTB-CBCCCCSCTTTCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCc-cccccCCCcCeeCHHHHccc
Confidence            56789999999999994   559999999999999754   559999999997764421 12234567777777665431


Q ss_pred             C------------------------------------------C----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 I------------------------------------------D----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 ~------------------------------------------~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +                                          +    ...+..+.+++..||+.+|.+|||+.++++
T Consensus       214 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          214 YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE  291 (494)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence            0                                          0    234678899999999999999999999984

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.67  E-value=4e-17  Score=122.98  Aligned_cols=49  Identities=24%  Similarity=0.261  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ....++.|++.||.|||+   .+++||||||.||+++.++.+|++|||.+..
T Consensus       129 ~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~  177 (389)
T 3gni_B          129 AIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLS  177 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEccccccee
Confidence            356789999999999994   5599999999999999999999999998754

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.67  E-value=3e-17  Score=118.31  Aligned_cols=113  Identities=21%  Similarity=0.186  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC----cEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW----VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      .+..++.|++.||.|||+   .+++|+||+|.||+++.++    .+||+|||++........ .....|+..+++||.+.
T Consensus       109 ~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~  184 (283)
T 3bhy_A          109 EATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE-FKNIFGTPEFVAPEIVN  184 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC---------CCCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCc-ccccCCCcCccCcceec
Confidence            467889999999999994   5699999999999998776    799999999876543211 11223455555555433


Q ss_pred             C----------------------C---------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           78 G----------------------K---------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        78 ~----------------------~---------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                      +                      .                     .+    ...+..+.+++.+||+.||++||++.+++
T Consensus       185 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l  264 (283)
T 3bhy_A          185 YEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSL  264 (283)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred             CCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHH
Confidence            2                      0                     01    23456788999999999999999999998


Q ss_pred             H--HHHHHHH
Q 044888          111 C--NLGLAWR  118 (154)
Q Consensus       111 ~--~L~~~~~  118 (154)
                      .  .++.+..
T Consensus       265 ~h~~~~~~~~  274 (283)
T 3bhy_A          265 EHSWIKAIRR  274 (283)
T ss_dssp             HCHHHHHHHH
T ss_pred             hCHHHHHHHH
Confidence            6  4555443

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.67  E-value=2e-17  Score=127.98  Aligned_cols=106  Identities=24%  Similarity=0.255  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEe---cCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill---~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++||||+|.||++   +.++.+||+|||++........ .....|+..|++||.+.+
T Consensus       127 ~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~  202 (484)
T 3nyv_A          127 DAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK-MKDKIGTAYYIAPEVLHG  202 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCS-HHHHTTGGGTCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccc-cccCCCCccccCceeecC
Confidence            356789999999999995   559999999999999   4678899999999876544211 122346666666665443


Q ss_pred             CC----------------------------------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 KI----------------------------------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ~~----------------------------------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+                                              ....+..+.+++.+||+.+|.+|||+.|+++
T Consensus       203 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          203 TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence            10                                              1235678899999999999999999999985

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.66  E-value=5.6e-17  Score=117.69  Aligned_cols=106  Identities=23%  Similarity=0.203  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~----   77 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++........ .....++..+++||.+.    
T Consensus       125 ~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  200 (298)
T 1phk_A          125 ETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK-LREVCGTPSYLAPEIIECSMN  200 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC-BCCCCSCGGGCCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCCcEEEecccchhhcCCCcc-cccccCCccccCHHHhccccc
Confidence            457889999999999994   5699999999999999999999999999876543211 11223444444444321    


Q ss_pred             ------------------------C-------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           78 ------------------------G-------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        78 ------------------------~-------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                              +                         +.....+..+.+++..||+.||++||++.+
T Consensus       201 ~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~  280 (298)
T 1phk_A          201 DNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEE  280 (298)
T ss_dssp             TTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             cccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHH
Confidence                                    0                         001245678999999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      +++
T Consensus       281 ll~  283 (298)
T 1phk_A          281 ALA  283 (298)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            975

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.66  E-value=1.1e-16  Score=119.39  Aligned_cols=71  Identities=21%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~   76 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++....... ......++..+++||.+
T Consensus       135 ~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE~~  205 (362)
T 3pg1_A          135 HIQYFMYHILLGLHVLHE---AGVVHRDLHPGNILLADNNDITICDFNLAREDTADA-NKTHYVTHRWYRAPELV  205 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCTTC----------------CGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CcCEecCCChHHEEEcCCCCEEEEecCccccccccc-ccceecccceecCcHHh
Confidence            356789999999999995   559999999999999999999999999997543321 11122344555555543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=118.46  Aligned_cols=104  Identities=20%  Similarity=0.223  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.+||+|||++.......   ....++..+++||.+.+   
T Consensus       127 ~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~  200 (353)
T 3coi_A          127 KIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEM---TGYVVTRWYRAPEVILSWMH  200 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEECSTTCTTC-----------CCSBCCSCHHHHSCCSC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEeecccccCCCCCc---cccccCcCcCCHHHHhCcCC
Confidence            356789999999999994   569999999999999999999999999987654321   11223333444433211   


Q ss_pred             ------------------------------------------------------------------------CCCcchHH
Q 044888           79 ------------------------------------------------------------------------KIDPGCFK   86 (154)
Q Consensus        79 ------------------------------------------------------------------------~~~~~~~~   86 (154)
                                                                                              ...+..+.
T Consensus       201 ~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (353)
T 3coi_A          201 YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASP  280 (353)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCH
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCH
Confidence                                                                                    01123467


Q ss_pred             HHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           87 TFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        87 ~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+.+++.+||+.||++||++.+++.
T Consensus       281 ~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          281 QAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             HHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHhc
Confidence            8899999999999999999999975

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.66  E-value=1.2e-16  Score=121.74  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++....... ......|+..|++||.+.+   
T Consensus       170 ~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  246 (410)
T 3v8s_A          170 ARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGG  246 (410)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCC
Confidence            45688999999999994   5699999999999999999999999999977654321 2234567788888776532   


Q ss_pred             ----------------------------------------------CCC--cchHHHHHHHHHHhhccCCCC--CCCHHH
Q 044888           79 ----------------------------------------------KID--PGCFKTFTDIAKKCLADRGCD--RPQMGD  108 (154)
Q Consensus        79 ----------------------------------------------~~~--~~~~~~~~~l~~~C~~~~p~~--RP~~~~  108 (154)
                                                                    .++  ...+.++.+++.+||+.+|.+  ||++.|
T Consensus       247 ~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~e  326 (410)
T 3v8s_A          247 DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEE  326 (410)
T ss_dssp             TCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHH
T ss_pred             CcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHH
Confidence                                                          111  245678999999999999988  999999


Q ss_pred             HHHH
Q 044888          109 VLCN  112 (154)
Q Consensus       109 v~~~  112 (154)
                      |.+.
T Consensus       327 i~~H  330 (410)
T 3v8s_A          327 IKRH  330 (410)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            9753

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.66  E-value=1.9e-16  Score=123.15  Aligned_cols=106  Identities=25%  Similarity=0.254  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC---cEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW---VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++||||+|.||+++.++   .+||+|||++....... ......|+..|++||.+.+
T Consensus       147 ~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~  222 (504)
T 3q5i_A          147 DAANIMKQILSGICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY-KLRDRLGTAYYIAPEVLKK  222 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTS-CBCCCCSCTTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCC-ccccccCCcCCCCHHHhcc
Confidence            356789999999999994   5599999999999998765   69999999998765432 1223456777777776543


Q ss_pred             CC------------------------------------------C----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 KI------------------------------------------D----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ~~------------------------------------------~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+                                          +    ...+.++.+++..||+.||.+|||+.|++.
T Consensus       223 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          223 KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            10                                          1    234678899999999999999999999975

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.65  E-value=1e-16  Score=120.28  Aligned_cols=68  Identities=28%  Similarity=0.362  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPF   75 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~   75 (154)
                      ....++.|++.||.|||+   .+++||||+|.||+++.++.+||+|||+++......+   ...|+..+++||.
T Consensus       133 ~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~---~~~~t~~y~aPE~  200 (367)
T 2fst_X          133 HVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMT---GYVATRWYRAPEI  200 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC------------------CCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEEeeccccccccccCC---CcCcCcCccChHH
Confidence            356789999999999994   5599999999999999999999999999976543211   1234444555543

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.65  E-value=1.8e-16  Score=115.99  Aligned_cols=106  Identities=20%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc---EEEecCCCcccCCCCcc-------eeeeccccccccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV---AKVSDLGLAKVGPNMLT-------LCCYQSGTLGLVV   72 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~---~kl~dfg~~~~~~~~~~-------~~~~~~g~~~~~~   72 (154)
                      ...++.|++.||.|||+   .+++|+||+|.||+++.++.   +||+|||++........       ......|+..+++
T Consensus       113 ~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  189 (316)
T 2ac3_A          113 ASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMA  189 (316)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCC
T ss_pred             HHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccC
Confidence            56789999999999995   56999999999999987765   99999999876432100       1112235555655


Q ss_pred             CccccC-----------------------------CC----------------------------------C----cchH
Q 044888           73 DPFLRG-----------------------------KI----------------------------------D----PGCF   85 (154)
Q Consensus        73 ~~~~~~-----------------------------~~----------------------------------~----~~~~   85 (154)
                      ||.+.+                             ++                                  +    ...+
T Consensus       190 PE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  269 (316)
T 2ac3_A          190 PEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHIS  269 (316)
T ss_dssp             HHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHHHHTTSC
T ss_pred             hHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCchhcccCC
Confidence            554320                             00                                  0    1245


Q ss_pred             HHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           86 KTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        86 ~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      ..+.+++.+||+.||++||++.|+++
T Consensus       270 ~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          270 CAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            67899999999999999999999976

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.64  E-value=9.6e-17  Score=119.63  Aligned_cols=50  Identities=38%  Similarity=0.569  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||+.  .+++|+||+|.||+++.++.+||+|||++...
T Consensus       133 ~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  182 (360)
T 3eqc_A          133 LGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  182 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCccc
Confidence            467899999999999952  25999999999999999999999999988543

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.64  E-value=5e-17  Score=119.46  Aligned_cols=105  Identities=25%  Similarity=0.209  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc---EEEecCCCcccCCCCcceeeecccccccccCcccc--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV---AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~---~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~--   77 (154)
                      ...++.|++.||.|||+   .+++|+||+|.||+++.++.   +||+|||++........ .....|+..+++||.+.  
T Consensus       116 ~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~  191 (322)
T 2ycf_A          116 CKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL-MRTLCGTPTYLAPEVLVSV  191 (322)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHH-HHHHHSCCTTCCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCCCeEEEccCccceecccccc-cccccCCcCccCchhhccC
Confidence            46789999999999994   56999999999999986654   99999999977643211 11123444444444321  


Q ss_pred             --C-----------------------------------------CC--C----cchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           78 --G-----------------------------------------KI--D----PGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        78 --~-----------------------------------------~~--~----~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                        .                                         ..  .    ...+..+.+++.+||+.||++||++.+
T Consensus       192 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~  271 (322)
T 2ycf_A          192 GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEE  271 (322)
T ss_dssp             TTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHH
Confidence              0                                         00  0    134677899999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      +++
T Consensus       272 ~l~  274 (322)
T 2ycf_A          272 ALR  274 (322)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            974

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.64  E-value=1.9e-16  Score=115.69  Aligned_cols=51  Identities=31%  Similarity=0.602  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~   55 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++ .++.+||+|||++....
T Consensus       121 ~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~  172 (320)
T 2i6l_A          121 HARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMD  172 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC-
T ss_pred             HHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCeEEEccCccccccC
Confidence            356789999999999994   5699999999999997 56789999999997654

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.63  E-value=2.4e-16  Score=120.08  Aligned_cols=105  Identities=21%  Similarity=0.197  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce-eeecccccccccCcccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL-CCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~g~~~~~~~~~~~----   77 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++........ .....|+..|++||.+.    
T Consensus       164 ~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~  240 (412)
T 2vd5_A          164 ARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGG  240 (412)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhccc
Confidence            45688999999999994   56999999999999999999999999999876543322 22356888888887654    


Q ss_pred             ----C--------------------------------------------CCC---cchHHHHHHHHHHhhccCCCCC---
Q 044888           78 ----G--------------------------------------------KID---PGCFKTFTDIAKKCLADRGCDR---  103 (154)
Q Consensus        78 ----~--------------------------------------------~~~---~~~~~~~~~l~~~C~~~~p~~R---  103 (154)
                          .                                            ..+   ...+.++.+++.+||. +|++|   
T Consensus       241 ~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr  319 (412)
T 2vd5_A          241 GPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGR  319 (412)
T ss_dssp             CTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCTTT
T ss_pred             CcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCC
Confidence                1                                            011   2456788999999999 99998   


Q ss_pred             CCHHHHHH
Q 044888          104 PQMGDVLC  111 (154)
Q Consensus       104 P~~~~v~~  111 (154)
                      |++.||..
T Consensus       320 ~~~~ei~~  327 (412)
T 2vd5_A          320 GGAGDFRT  327 (412)
T ss_dssp             TTHHHHHT
T ss_pred             CCHHHHhc
Confidence            58888864

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.63  E-value=2e-16  Score=114.45  Aligned_cols=106  Identities=26%  Similarity=0.298  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC---CcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN---WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~---~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ..+.++.|++.||.|||+   .+++|+||+|.||+++.+   ..+||+|||++........ .....++..+++||.+.+
T Consensus       122 ~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~  197 (287)
T 2wei_A          122 DAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK-MKDRIGTAYYIAPEVLRG  197 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSS-CSCHHHHHTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCc-cccccCcccccChHHhcC
Confidence            457889999999999994   569999999999999754   4699999999876543211 011123333333332221


Q ss_pred             ----------------------------------------C--CC----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------K--ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------~--~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                              .  .+    ...+.++.+++..||+.||++||++.++++
T Consensus       198 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          198 TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence                                                    0  01    235678999999999999999999999986

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.62  E-value=4.3e-16  Score=119.53  Aligned_cols=106  Identities=17%  Similarity=0.186  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce-eeecccccccccCcccc----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL-CCYQSGTLGLVVDPFLR----   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~g~~~~~~~~~~~----   77 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+||+|||+++........ .....|+..|++||.+.    
T Consensus       177 ~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  253 (437)
T 4aw2_A          177 ARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEG  253 (437)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhccc
Confidence            4568999999999999   455999999999999999999999999999766543222 22346888888888653    


Q ss_pred             -C---------------------------------------------CCC---cchHHHHHHHHHHhhccCCCC--CCCH
Q 044888           78 -G---------------------------------------------KID---PGCFKTFTDIAKKCLADRGCD--RPQM  106 (154)
Q Consensus        78 -~---------------------------------------------~~~---~~~~~~~~~l~~~C~~~~p~~--RP~~  106 (154)
                       .                                             ..+   ...+.++.+++.+|+..+|++  ||++
T Consensus       254 ~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~  333 (437)
T 4aw2_A          254 GKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGI  333 (437)
T ss_dssp             SCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTT
T ss_pred             CCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCCCH
Confidence             1                                             111   235778899999999888887  9999


Q ss_pred             HHHHH
Q 044888          107 GDVLC  111 (154)
Q Consensus       107 ~~v~~  111 (154)
                      .|+++
T Consensus       334 ~eil~  338 (437)
T 4aw2_A          334 EDFKK  338 (437)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            99875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.62  E-value=4.6e-16  Score=125.03  Aligned_cols=109  Identities=19%  Similarity=0.263  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKI-   80 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-   80 (154)
                      +++.++.|++.||.|||+   .+++||||||.||+++.+ .+||+|||+++.....    ....|+..|++||.+.+.. 
T Consensus       183 ~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~----~~~~gt~~y~aPE~~~~~~~  254 (681)
T 2pzi_A          183 EAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF----GYLYGTPGFQAPEIVRTGPT  254 (681)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC----SCCCCCTTTSCTTHHHHCSC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEEEecccchhcccC----CccCCCccccCHHHHcCCCC
Confidence            467899999999999994   559999999999999875 8999999999876542    2345677777777553210 


Q ss_pred             ------------------------------Cc-----chHHHHHHHHHHhhccCCCCCC-CHHHHHHHHHHHHH
Q 044888           81 ------------------------------DP-----GCFKTFTDIAKKCLADRGCDRP-QMGDVLCNLGLAWR  118 (154)
Q Consensus        81 ------------------------------~~-----~~~~~~~~l~~~C~~~~p~~RP-~~~~v~~~L~~~~~  118 (154)
                                                    +.     ..+..+.+|+.+||+.||++|| ++.++...|..+..
T Consensus       255 ~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~  328 (681)
T 2pzi_A          255 VATDIYTVGRTLAALTLDLPTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR  328 (681)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEETTEECSSCCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred             CceehhhhHHHHHHHHhCCCCCcccccccccccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence                                          11     1235788999999999999999 46666677776653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.61  E-value=2.5e-16  Score=124.32  Aligned_cols=73  Identities=21%  Similarity=0.222  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCC
Q 044888            5 KICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKI   80 (154)
Q Consensus         5 ~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (154)
                      +|+.||+.||.|+|   ..+|+||||||.|||++.++.+||+|||+++......+......|++.+++||.+.+..
T Consensus       343 ~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~~  415 (569)
T 4azs_A          343 KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAENK  415 (569)
T ss_dssp             HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCCCC
Confidence            58999999999999   56699999999999999999999999999988766555555667999999999887643

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.59  E-value=4.4e-15  Score=107.84  Aligned_cols=115  Identities=9%  Similarity=-0.050  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC-------------cceeeeccc-cc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM-------------LTLCCYQSG-TL   68 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~-------------~~~~~~~~g-~~   68 (154)
                      .++++.|++.||.|||+   .+++|+||||.||+++.++.+|+++++........             .+......+ +.
T Consensus       131 ~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~  207 (286)
T 3uqc_A          131 AIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPATMPDANPQDDIRGIGASLYALLVNRWPLPEAGV  207 (286)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCCCCTTCCHHHHHHHHHHHHHHHHHSEECSCCCSB
T ss_pred             HHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEeccccCCCCchhHHHHHHHHHHHHHHCCCCCCcCCc
Confidence            56789999999999994   56999999999999999999999977665332110             000000111 00


Q ss_pred             cc---ccCccccCC------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhcC
Q 044888           69 GL---VVDPFLRGK------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus        69 ~~---~~~~~~~~~------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~~  121 (154)
                      ..   .+...+.+.      .....+.++.+++.+||+.||++| |+.|+++.|+.+.....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~  268 (286)
T 3uqc_A          208 RSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVAD  268 (286)
T ss_dssp             CCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred             chhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence            00   001111111      123567889999999999999999 99999999999876554

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.59  E-value=6.7e-15  Score=117.77  Aligned_cols=115  Identities=23%  Similarity=0.187  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCc---EEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWV---AKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~---~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ....++.|++.||.|||+   .+++|+||+|.||+++.++.   +|++|||.+........ .....|+..+++||.+.+
T Consensus       122 ~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~-~~~~~gt~~Y~APE~l~~  197 (676)
T 3qa8_A          122 PIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGEL-CTEFVGTLQYLAPELLEQ  197 (676)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCC-CCCCCSCCTTCSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEcccccccccccccc-cccccCCcccCChHHhcc
Confidence            457899999999999994   56999999999999986654   89999999977543211 112233444444443321


Q ss_pred             -------------------------------------------------------------------CCCcchHHHHHHH
Q 044888           79 -------------------------------------------------------------------KIDPGCFKTFTDI   91 (154)
Q Consensus        79 -------------------------------------------------------------------~~~~~~~~~~~~l   91 (154)
                                                                                         ......+..+.++
T Consensus       198 ~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dL  277 (676)
T 3qa8_A          198 KKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERW  277 (676)
T ss_dssp             SCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHH
Confidence                                                                               1122367899999


Q ss_pred             HHHhhccCCCCCCCHHH-----HHHHHHHHHHhc
Q 044888           92 AKKCLADRGCDRPQMGD-----VLCNLGLAWRQQ  120 (154)
Q Consensus        92 ~~~C~~~~p~~RP~~~~-----v~~~L~~~~~~~  120 (154)
                      +..||+.||++||++.+     ....++.+....
T Consensus       278 I~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~k  311 (676)
T 3qa8_A          278 LQCMLMWHQRQRGTDPQNPNVGCFQALDSILSLK  311 (676)
T ss_dssp             HHHHSCSSCC---CCTTCCCCTTHHHHHHHHCCC
T ss_pred             HHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhcc
Confidence            99999999999999988     456666666543

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.47  E-value=1.2e-13  Score=101.97  Aligned_cols=98  Identities=15%  Similarity=0.057  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHHhh-cCCCCCcEeecCCCCcEEecCCC--------------------cEEEecCCCcccCCCCcce
Q 044888            2 WRLKICIGAARGLHYLR-TGTRNIIIHRDVKSTNILLDENW--------------------VAKVSDLGLAKVGPNMLTL   60 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH-~~~~~~i~h~dl~~~nill~~~~--------------------~~kl~dfg~~~~~~~~~~~   60 (154)
                      ....++.|++.||.||| +..   ++||||||.|||++.++                    .+||+|||+++.....   
T Consensus       162 ~~~~i~~qi~~aL~~lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~---  235 (336)
T 2vuw_A          162 TAKSILHQLTASLAVAEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG---  235 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT---
T ss_pred             HHHHHHHHHHHHHHHHHHhCC---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC---
Confidence            35678999999999999 655   99999999999999876                    8999999999876432   


Q ss_pred             eeecccccccccCccccCCCCcchHHHHHHHHHHhhccCCCCCCCHHHH
Q 044888           61 CCYQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDV  109 (154)
Q Consensus        61 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v  109 (154)
                        ...|+..|++||.+.+..  ....+++.++.......-..++.+...
T Consensus       236 --~~~gt~~y~aPE~~~g~~--~~~~Diwsl~~~~~~~~~~g~~p~~~~  280 (336)
T 2vuw_A          236 --IVVFCDVSMDEDLFTGDG--DYQFDIYRLMKKENNNRWGEYHPYSNV  280 (336)
T ss_dssp             --EEECCCCTTCSGGGCCCS--SHHHHHHHHHHHHHTTCTTSCCTHHHH
T ss_pred             --cEEEeecccChhhhcCCC--ccceehhhhhCCCCcccccccCCCcch
Confidence              346889999999998766  567788887665344333445555543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.10  E-value=1.2e-11  Score=97.05  Aligned_cols=70  Identities=21%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-------eeeecccccccccCcc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-------LCCYQSGTLGLVVDPF   75 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-------~~~~~~g~~~~~~~~~   75 (154)
                      ++.++.|++.||.|||+   .+++||||||.||+++.  .+||+|||+++.......       ......|+..+++||.
T Consensus       433 ~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv  507 (540)
T 3en9_A          433 NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEI  507 (540)
T ss_dssp             CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHH
Confidence            35789999999999994   55999999999999998  999999999988765311       1123457777777776


Q ss_pred             cc
Q 044888           76 LR   77 (154)
Q Consensus        76 ~~   77 (154)
                      +.
T Consensus       508 ~~  509 (540)
T 3en9_A          508 WE  509 (540)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.10  E-value=8.9e-11  Score=85.10  Aligned_cols=48  Identities=13%  Similarity=0.016  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++.|++.||.|||   ..+++|+||+|.||+++ ++.+||+|||++...
T Consensus       195 ~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~~  242 (282)
T 1zar_A          195 PDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEV  242 (282)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-TTEEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-CCcEEEEECCCCeEC
Confidence            4578999999999999   55699999999999999 999999999998754

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.94  E-value=1.2e-09  Score=78.10  Aligned_cols=49  Identities=18%  Similarity=0.150  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHHHHhh-cCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            2 WRLKICIGAARGLHYLR-TGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH-~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ....++.|++.||.||| +..   ++|+||+|.||+++.  .++|+|||++....
T Consensus       171 ~~~~i~~qi~~~l~~lH~~~g---ivHrDlkp~NILl~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          171 DVEGIFNDVVENVKRLYQEAE---LVHADLSEYNIMYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSC---EECSSCSTTSEEESS--SEEECCCTTCEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEEcC--cEEEEECcccccCC
Confidence            35678999999999999 654   999999999999988  89999999997653

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.19  E-value=7.9e-07  Score=67.18  Aligned_cols=48  Identities=17%  Similarity=0.109  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC----------cEEEecCCCcccC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW----------VAKVSDLGLAKVG   54 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~----------~~kl~dfg~~~~~   54 (154)
                      ..++.|++.+|.|||.   .+++||||||.|||++.++          .+.+.||+-+-..
T Consensus       208 ~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          208 ASLYADLIALILRLAK---HGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             HHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccC
Confidence            3578999999999994   5699999999999998765          3789999866443

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.15  E-value=0.00053  Score=47.90  Aligned_cols=30  Identities=23%  Similarity=0.334  Sum_probs=26.2

Q ss_pred             cEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           25 IIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        25 i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ++|+|+++.||+++.+..+++.||+.+...
T Consensus       186 l~HgDl~~~Nil~~~~~~~~liD~~~a~~g  215 (264)
T 1nd4_A          186 VTHGDACLPNIMVENGRFSGFIDCGRLGVA  215 (264)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             EECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence            999999999999987766789999987654

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.01  E-value=0.0008  Score=47.37  Aligned_cols=31  Identities=26%  Similarity=0.391  Sum_probs=25.9

Q ss_pred             CCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888           23 NIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus        23 ~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ..++|+|+++.||+++.+..+.+.||+.+..
T Consensus       183 ~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          183 LVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             ceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence            4589999999999998766667999988754

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=96.56  E-value=0.0021  Score=47.44  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=27.1

Q ss_pred             CCcEeecCCCCcEEecCCCc--EEEecCCCcccCC
Q 044888           23 NIIIHRDVKSTNILLDENWV--AKVSDLGLAKVGP   55 (154)
Q Consensus        23 ~~i~h~dl~~~nill~~~~~--~kl~dfg~~~~~~   55 (154)
                      ..++|+|+++.||+++.++.  +.+.||+.+....
T Consensus       216 ~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g~  250 (359)
T 3dxp_A          216 TSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLGH  250 (359)
T ss_dssp             CEEECSSCSGGGEEECSSSSCEEEECCCTTCEEEC
T ss_pred             ceEEeCCCCCCcEEEeCCCCcEEEEECccccccCC
Confidence            56999999999999987643  6899999886543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=95.63  E-value=0.015  Score=41.85  Aligned_cols=33  Identities=33%  Similarity=0.528  Sum_probs=27.5

Q ss_pred             CCcEeecCCCCcEEecC--CCcEEEecCCCcccCC
Q 044888           23 NIIIHRDVKSTNILLDE--NWVAKVSDLGLAKVGP   55 (154)
Q Consensus        23 ~~i~h~dl~~~nill~~--~~~~kl~dfg~~~~~~   55 (154)
                      ..++|+|+.+.|++++.  ...+.+.||+.+....
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~  225 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISD  225 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEEEC
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCC
Confidence            45899999999999987  5567899999886543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=94.96  E-value=0.023  Score=41.17  Aligned_cols=34  Identities=29%  Similarity=0.237  Sum_probs=29.2

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++|+|+.+.|++++.++.+.+.||+.+....
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~g~  254 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVSFDL  254 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCEECC
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcccCC
Confidence            5679999999999999877889999999876543

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=91.13  E-value=0.12  Score=36.08  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=26.9

Q ss_pred             CCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           23 NIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        23 ~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ..++|+|+.+.|++++....+-|.||+.+...
T Consensus       193 ~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g  224 (272)
T 4gkh_A          193 SVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA  224 (272)
T ss_dssp             EEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             cEEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence            34899999999999998777789999887653

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=90.96  E-value=0.1  Score=39.26  Aligned_cols=33  Identities=21%  Similarity=0.466  Sum_probs=28.2

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++|+|+.+.||+++.+. +.+.||+.+....
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~  263 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGP  263 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEEC
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCc
Confidence            56799999999999998776 9999998886644

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=90.05  E-value=0.099  Score=37.63  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=26.9

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ...++|+|+.+.|++++.+..+.+.||+.+..
T Consensus       186 ~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          186 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            45699999999999998876668999987754

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=89.79  E-value=0.49  Score=34.20  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=28.9

Q ss_pred             CCCcEeecCCCCcEEecCC----CcEEEecCCCcccCCC
Q 044888           22 RNIIIHRDVKSTNILLDEN----WVAKVSDLGLAKVGPN   56 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~----~~~kl~dfg~~~~~~~   56 (154)
                      ...++|+|+.+.|++++.+    ..+.+.||+.+.....
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~  220 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHR  220 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECT
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCC
Confidence            4679999999999999874    6789999988766543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=89.14  E-value=0.19  Score=36.14  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=27.7

Q ss_pred             CCCcEeecCCCCcEEecC---CCc-EEEecCCCcccCCC
Q 044888           22 RNIIIHRDVKSTNILLDE---NWV-AKVSDLGLAKVGPN   56 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~---~~~-~kl~dfg~~~~~~~   56 (154)
                      ...++|+|+.+.|++++.   ++. +.|.||+.+.....
T Consensus       189 ~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~gd~  227 (306)
T 3tdw_A          189 TPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDP  227 (306)
T ss_dssp             CCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEECG
T ss_pred             CCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCCCH
Confidence            556899999999999987   344 58999998765443

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=88.15  E-value=0.16  Score=37.10  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=27.0

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++|+|+.+.||+++.+..+.|.||..+...
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~g  253 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVALG  253 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEEE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEcccccccC
Confidence            456999999999999986545789999887654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=85.83  E-value=0.86  Score=32.68  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=26.3

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++|+|+.+.||+++ + .+.+.||+.+....
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g~  225 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDARNGP  225 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCCEEC
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCCcCc
Confidence            45689999999999998 4 78999998775543

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=84.33  E-value=0.88  Score=31.43  Aligned_cols=50  Identities=12%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHH-HhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLH-YLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~-~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      .|++++..++.-.. +++     .-++--+.|.|++++.++.+++...|+-..+++
T Consensus        86 eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~~~p~i~hRGi~~~lpP  136 (219)
T 4ano_A           86 SRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRALEPFFLHVGVKESLPP  136 (219)
T ss_dssp             HHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTTCCEEESCCEETTTBSS
T ss_pred             HHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCCCcEEEEEcCCcccCCC
Confidence            47788888776444 333     256788999999999999999999998766544

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=83.46  E-value=0.45  Score=35.01  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=25.5

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG   54 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~   54 (154)
                      ...++|+|+.+.|++++.+. +.+.||..+...
T Consensus       211 ~~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~g  242 (369)
T 3c5i_A          211 TIVFCHNDLQENNIINTNKC-LRLIDFEYSGFN  242 (369)
T ss_dssp             CEEEECSCCCGGGEEECC-C-EEECCCTTCEEE
T ss_pred             CeEEEeCCCCcccEEecCCc-EEEEEecCCCCC
Confidence            45699999999999997654 789999877543

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=82.72  E-value=0.43  Score=34.88  Aligned_cols=35  Identities=17%  Similarity=0.372  Sum_probs=29.0

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...++|+|+.+.|++++.++.+.+.||..+.....
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~~~  239 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAPK  239 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEEECT
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCeeCCH
Confidence            45699999999999998777899999987765443

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=82.30  E-value=0.65  Score=33.07  Aligned_cols=34  Identities=18%  Similarity=0.071  Sum_probs=27.1

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...++|+|+.+.|++ ..++.+.+.||..+.....
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g~~  205 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGMNDP  205 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEEECT
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccCCCH
Confidence            456899999999999 5566789999988765443

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=80.54  E-value=0.85  Score=33.81  Aligned_cols=33  Identities=33%  Similarity=0.499  Sum_probs=26.9

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ...++|+|+.+.|++++.+ .+++.||..+....
T Consensus       226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~G~  258 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAFYGP  258 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS-CEEECCCTTCEEEC
T ss_pred             CCceeeCCCCcCcEEEeCC-CeEEEeCcccccCC
Confidence            4569999999999999765 48899998776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-14
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-14
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	6e-14
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-14
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-13
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	7e-13
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-13
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	9e-13
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-12
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-12
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-12
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-12
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-12
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-12
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	9e-12
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-11
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-11
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-11
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-11
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-11
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-11
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	7e-11
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	9e-11
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-10
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-10
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	6e-10
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	8e-10
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-09
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-09
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-09
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-09
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-09
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-09
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-09
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	9e-09
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-08
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-08
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-08
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-08
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-08
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	6e-08
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	7e-08
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-07
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-07
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-06
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-06
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	5e-06
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-06
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-06
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-05
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-05
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-05
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	4e-05
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	5e-05
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	6e-05
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-04
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-04
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	0.001
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	0.002
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	0.004

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 2e-14
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 47/156 (30%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG------- 54
             L      ARG+ YL    +   IHRD+ + NIL+ EN+VAK++D GL++         
Sbjct: 128 QLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKT 184

Query: 55  -----PNMLTLCCYQSGTLGLVVD-----------------PF---------------LR 77
                   + +            D                 P+                R
Sbjct: 185 MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR 244

Query: 78  GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
            +    C     D+ ++C  ++  +RP    +L +L
Sbjct: 245 LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL 280

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 3e-14
 Identities = 32/165 (19%), Positives = 48/165 (29%), Gaps = 57/165 (34%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--- 59
            + I    A+G+ YL       IIHRD+KS NI L E+   K+ D GLA V         
Sbjct: 106 LIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 162

Query: 60  ---------------LCCYQSGTLGLVVD----------------PF------------- 75
                          +            D                P+             
Sbjct: 163 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV 222

Query: 76  -------LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
                     K+   C K    +  +CL  +  +RP    +L ++
Sbjct: 223 GRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASI 267

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 6e-14
 Identities = 22/160 (13%), Positives = 42/160 (26%), Gaps = 51/160 (31%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV--GPNMLTL 60
            L      A+G+ +L        +HRD+ + N+L+    V K+ D GLA+     +   +
Sbjct: 166 LLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVV 222

Query: 61  CCYQSGTLG----------------------------------------------LVVDP 74
                  +                                                ++  
Sbjct: 223 RGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQN 282

Query: 75  FLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG 114
             +        +    I + C A     RP   ++   LG
Sbjct: 283 GFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 7e-14
 Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 50/159 (31%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV-------- 53
           + L  C+  A+G++YL       ++HRD+ + N+L+      K++D GLAK+        
Sbjct: 112 YLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 168

Query: 54  -------------------------------GPNMLTLCCYQS--------GTLGLVVDP 74
                                          G  +  L  + S          +  +++ 
Sbjct: 169 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEK 228

Query: 75  FLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
             R    P C      I  KC       RP+  +++   
Sbjct: 229 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF 267

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (152), Expect = 4e-13
 Identities = 29/162 (17%), Positives = 46/162 (28%), Gaps = 53/162 (32%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL- 60
             + +  G A G+ YL        +HRD+ + NIL++ N V KVSD GL++   +  +  
Sbjct: 129 QLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 185

Query: 61  -----------------CCYQSGTLGLVVD-----------------PF----------- 75
                               Q        D                 P+           
Sbjct: 186 TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINA 245

Query: 76  ----LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
                R      C      +   C       RP+ G ++  L
Sbjct: 246 IEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTL 287

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 7e-13
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT 59
              K+ I   +GL YLR   ++ I+HRDVK +NIL++     K+ D G++    + + 
Sbjct: 105 ILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 160

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 8e-13
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC 62
              +C      L+YL     N IIHRD+K+ NIL   +   K++D G++      +    
Sbjct: 112 IQVVCKQTLDALNYL---HDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRD 168

Query: 63  YQSGTLG 69
              GT  
Sbjct: 169 SFIGTPY 175

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 9e-13
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 50/156 (32%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV--GPNMLT 59
            +L I    A G+ YL        +HRD+ + N L+ EN V K++D GL++     +   
Sbjct: 141 EQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK 197

Query: 60  LCCYQSGTLGLVVDPFLRG----------------------------------------- 78
                +  +  +    +                                           
Sbjct: 198 ADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRD 257

Query: 79  ----KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
                    C     ++ + C +    DRP    + 
Sbjct: 258 GNILACPENCPLELYNLMRLCWSKLPADRPSFCSIH 293

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (149), Expect = 1e-12
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC 62
              +  GA +GL YL     + +IHRDVK+ NILL E  + K+ D G A +     +   
Sbjct: 117 IAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFV- 172

Query: 63  YQSGTLGLVVDPFLRG 78
              GT   +    +  
Sbjct: 173 ---GTPYWMAPEVILA 185

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 50/175 (28%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN------ 56
            L +    +  + YL    +   IHRD+ + N L+ EN + KV+D GL+++         
Sbjct: 117 LLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 173

Query: 57  --------------------------------MLTLCCYQS--------GTLGLVVDPFL 76
                                           +  +  Y            +  +++   
Sbjct: 174 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDY 233

Query: 77  RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQEDI 131
           R +   GC +   ++ + C      DRP   ++         Q+ ++   +++++
Sbjct: 234 RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFE-TMFQESSISDEVEKEL 287

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 2e-12
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 2   WRLKICIGAARGLHYL-----RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN 56
             +K+ +  A GL +L      T  +  I HRD+KS NIL+ +N    ++DLGLA    +
Sbjct: 101 GMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS 160

Query: 57  ----MLTLCCYQSGTLGLVVDPFLRGKIDPGCFKTFT 89
               +     ++ GT   +    L   I+   F++F 
Sbjct: 161 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFK 197

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 3e-12
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 49/158 (31%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK--------- 52
             + +    A G+ Y+    R   +HRD+++ NIL+ EN V KV+D GLA+         
Sbjct: 114 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 170

Query: 53  ----VGPNMLTLCCYQSG----------TLGLV-----------------------VDPF 75
                 P   T                 + G++                       V+  
Sbjct: 171 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG 230

Query: 76  LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
            R    P C ++  D+  +C      +RP    +   L
Sbjct: 231 YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFL 268

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 6e-12
 Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 51/161 (31%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL 60
           +  + +  G A G+ YL        +HRD+ + NIL++ N V KVSD GL++V  +    
Sbjct: 110 LQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA 166

Query: 61  CCYQSGTLGLV------------------------------------------------V 72
               SG    +                                                +
Sbjct: 167 TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAI 226

Query: 73  DPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
           +   R      C      +  +C       RP+  D++  L
Sbjct: 227 NDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL 267

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 8e-12
 Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 46/155 (29%)

Query: 2   WRLKICIGAARGLHYL--RTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG----- 54
           + L++       L     R+   + ++HRD+K  N+ LD     K+ D GLA++      
Sbjct: 110 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS 169

Query: 55  --------PNMLTLCCYQSGTLGLVVD----------------PF------------LRG 78
                   P  ++       +     D                PF              G
Sbjct: 170 FAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREG 229

Query: 79  K---IDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
           K   I         +I  + L  +   RP + ++L
Sbjct: 230 KFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEIL 264

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 9e-12
 Identities = 28/150 (18%), Positives = 42/150 (28%), Gaps = 44/150 (29%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN--MLT 59
                    A  L Y        +IHRD+K  N+LL      K++D G +   P+    T
Sbjct: 107 RTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT 163

Query: 60  LC---------CYQSGTLGLVVD----------------PF--------------LRGKI 80
           LC           +       VD                PF              +    
Sbjct: 164 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTF 223

Query: 81  DPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
                +   D+  + L      RP + +VL
Sbjct: 224 PDFVTEGARDLISRLLKHNPSQRPMLREVL 253

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 53/179 (29%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV----GPN 56
              +   +  A+G+ +L        +HRD+ + N +LDE +  KV+D GLA+       +
Sbjct: 130 KDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFD 186

Query: 57  MLTLCCYQSGTLGLVVDPFLRGK------------------------------------- 79
            +         +  +    L+ +                                     
Sbjct: 187 SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVY 246

Query: 80  --------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQGAVDHYIQED 130
                       C     ++  KC   +   RP   +++  +  A       +HY+  +
Sbjct: 247 LLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS-AIFSTFIGEHYVHVN 304

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 49/159 (30%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLT 59
              L +    A G+ ++        IHRD+++ NIL+ +    K++D GLA+ +  N  T
Sbjct: 109 NKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 165

Query: 60  LCCYQSGTLGLVVDPFLRGK---------------------------------------- 79
                   +       +                                           
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 225

Query: 80  -----IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
                    C +    + + C  +R  DRP    +   L
Sbjct: 226 GYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVL 264

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 27/157 (17%), Positives = 41/157 (26%), Gaps = 51/157 (32%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV-------- 53
              ++    + G+ YL        +HRD+ + N+LL     AK+SD GL+K         
Sbjct: 110 NVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYY 166

Query: 54  --------GPNMLTLCCYQSGTLGLVVD-----------------PF------------- 75
                           C          D                 P+             
Sbjct: 167 TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIE 226

Query: 76  --LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
              R +  P C      +   C   +  DRP    V 
Sbjct: 227 QGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVE 263

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 3e-11
 Identities = 25/156 (16%), Positives = 39/156 (25%), Gaps = 51/156 (32%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM--LTL 60
            L      A+G+ +L        IHRD+ + NILL    + K+ D GLA+   N     +
Sbjct: 147 LLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVV 203

Query: 61  CCYQSGTLGL----------------------------------------------VVDP 74
                  +                                                ++  
Sbjct: 204 KGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKE 263

Query: 75  FLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
             R            DI K C       RP    ++
Sbjct: 264 GFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIV 299

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 45/151 (29%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
             LK  +     + YL     N  +HRD+ + N+L+ E+ VAKVSD GL K   +     
Sbjct: 104 CLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG 160

Query: 62  CY----------QSGTLGLVVD-----------------PF---------------LRGK 79
                       +        D                 P+                +  
Sbjct: 161 KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMD 220

Query: 80  IDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
              GC     ++ K C       RP    + 
Sbjct: 221 APDGCPPAVYEVMKNCWHLDAAMRPSFLQLR 251

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 5e-11
 Identities = 29/156 (18%), Positives = 43/156 (27%), Gaps = 49/156 (31%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLT 59
              L +C+    G+ YL       +IHRD+ + N L+ EN V KVSD G+ + V  +  T
Sbjct: 101 ETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 157

Query: 60  LCCYQSGTLGLV---------------------------------------------VDP 74
                   +                                                +  
Sbjct: 158 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDIST 217

Query: 75  FLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
             R             I   C  +R  DRP    +L
Sbjct: 218 GFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLL 253

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 7e-11
 Identities = 30/153 (19%), Positives = 43/153 (28%), Gaps = 45/153 (29%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL-DENWVAKVSDLGLAKVGPN---- 56
                C    +GL +L T T  II HRD+K  NI +       K+ DLGLA +       
Sbjct: 113 VLRSWCRQILKGLQFLHTRTPPII-HRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK 171

Query: 57  ---------------------------------MLTL------CCYQSGTLGLVVDPFLR 77
                                            M T       C   +     V      
Sbjct: 172 AVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKP 231

Query: 78  GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
              D        +I + C+     +R  + D+L
Sbjct: 232 ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 264

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 9e-11
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
             +      A+G+ +L        IHRD+ + NILL E  V K+ D GLA+         
Sbjct: 135 HLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 191

Query: 62  CYQS--GTLGLVVDPFLRGK 79
                   L  +    +  +
Sbjct: 192 RKGDARLPLKWMAPETIFDR 211

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 17/79 (21%), Positives = 31/79 (39%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL 60
               +     A  +  L       +++RD+K  N++LD++   K++D GL K G +    
Sbjct: 102 FTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT 161

Query: 61  CCYQSGTLGLVVDPFLRGK 79
                GT   +    L   
Sbjct: 162 MKTFCGTPEYLAPEVLEDN 180

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 5e-10
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV 53
               +       G+ YL       I HRD+K  N+LLDE    K+SD GLA V
Sbjct: 103 PDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATV 152

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (129), Expect = 6e-10
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL 60
                        L YL       II+RD+K  NILLD+N   K++D G AK  P++   
Sbjct: 104 PVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT 160

Query: 61  CC 62
            C
Sbjct: 161 LC 162

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 8e-10
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 49/159 (30%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLT 59
              L++C      + YL        +HRD+ + N L+++  V KVSD GL++ V  +  T
Sbjct: 100 QQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT 156

Query: 60  LCCYQSGTLG------------------------------LVVDPF-------------- 75
                   +                               L   P+              
Sbjct: 157 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ 216

Query: 76  -LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
            LR        +    I   C  ++  +RP    +L N+
Sbjct: 217 GLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNI 255

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
                      GL ++       +++RD+K  NILLDE+   ++SDLGLA          
Sbjct: 108 DMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHA 164

Query: 62  CYQS 65
              +
Sbjct: 165 SVGT 168

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 51/159 (32%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV---GPNMLT 59
            +++    + G+ YL     +  +HRD+ + N+LL     AK+SD GL+K      N   
Sbjct: 109 IIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK 165

Query: 60  LCCYQSGTLGLV-------------VD-----------------PF-------------- 75
              +    +                 D                 P+              
Sbjct: 166 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEK 225

Query: 76  -LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
             R     GC +   D+   C      +RP    V   L
Sbjct: 226 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL 264

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 1e-09
 Identities = 22/158 (13%), Positives = 43/158 (27%), Gaps = 49/158 (31%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK-VGPNMLTL 60
             +      +  L YL        +HRD+ + N+L+  N   K+ D GL++ +  +    
Sbjct: 109 SLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYK 165

Query: 61  CCYQSGTLGLVVDPFLRGK----------------------------------------- 79
                  +  +    +  +                                         
Sbjct: 166 ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENG 225

Query: 80  ----IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
               + P C  T   +  KC A     RP+  ++   L
Sbjct: 226 ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL 263

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
                     +GL +      + ++HRD+K  N+L++     K++D GLA+     +   
Sbjct: 103 LIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY 159

Query: 62  CYQSGTLGLVVDPFLRGK 79
            ++  TL       L G 
Sbjct: 160 THEVVTLWYRAPEILLGC 177

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 4e-09
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
                      GL +L       I++RD+K  NILLD++   K++D G+ K         
Sbjct: 104 RATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKT 160

Query: 62  CYQSGTLGLVVDPFLRGK 79
               GT   +    L G+
Sbjct: 161 NTFCGTPDYIAPEILLGQ 178

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 7e-09
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC 62
              +C    + L +L     N +IHRD+KS NILL  +   K++D G         +   
Sbjct: 118 IAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS 174

Query: 63  YQSGTLG 69
              GT  
Sbjct: 175 TMVGTPY 181

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 8e-09
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
                 +   +GL YL    ++ I+HRD+K  N+LLDEN V K++D GLAK   +     
Sbjct: 101 HIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAY 157

Query: 62  CYQSGTLGLVVDPFLRG 78
            +Q  T        L G
Sbjct: 158 THQVVTRWYRAPELLFG 174

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 9e-09
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
               +     RGL +L     + ++HRD+K  NIL+  +   K++D GLA++    + L 
Sbjct: 117 TIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALT 173

Query: 62  CYQSGTLGLVVDPFLRGK 79
                TL       L   
Sbjct: 174 SVV-VTLWYRAPEVLLQS 190

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 26/158 (16%), Positives = 44/158 (27%), Gaps = 52/158 (32%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV-------- 53
              +  +  A G+ YL        IHRD+ + N+LL    + K+ D GL +         
Sbjct: 112 TLSRYAVQVAEGMGYL---ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY 168

Query: 54  --------------------------------GPNMLTLCCY---------QSGTLGLVV 72
                                           G  +  +  Y          S  L  + 
Sbjct: 169 VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKID 228

Query: 73  DPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL 110
               R      C +   ++  +C A +  DRP    + 
Sbjct: 229 KEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALR 266

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV----GPNM 57
              ++      GL+Y+    RN I+HRD+K+ N+L+  + V K++D GLA+       + 
Sbjct: 118 EIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQ 174

Query: 58  LTLCCYQSGTLGLVVDPFLRGK 79
                 +  TL       L G+
Sbjct: 175 PNRYTNRVVTLWYRPPELLLGE 196

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 26/158 (16%), Positives = 43/158 (27%), Gaps = 50/158 (31%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVG-------- 54
            +      ARG+ YL        IHRD+ + N+L+ E+ V K++D GLA+          
Sbjct: 137 LVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 193

Query: 55  -------PNMLTLCCYQSGTLGLVVD-----------------PF--------------- 75
                     +              D                 P+               
Sbjct: 194 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEG 253

Query: 76  LRGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
            R      C      + + C       RP    ++ +L
Sbjct: 254 HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 291

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 21/160 (13%), Positives = 45/160 (28%), Gaps = 50/160 (31%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL 60
              +++    A G+ YL     N  +HRD+ + N ++ E++  K+ D G+ +        
Sbjct: 133 SKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYY 189

Query: 61  CCYQSGT------------------------LGLVVDPFLRGKIDP-------------- 82
                G                          G+V+         P              
Sbjct: 190 RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVM 249

Query: 83  ---------GCFKTFTDIAKKCLADRGCDRPQMGDVLCNL 113
                     C     ++ + C       RP   +++ ++
Sbjct: 250 EGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI 289

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
                     RGL Y+       ++HRD+K +N+LL+     K+ D GLA+V        
Sbjct: 110 HICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT 166

Query: 62  CYQSGTLG 69
            + +  + 
Sbjct: 167 GFLTEYVA 174

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 5e-08
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 6   ICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQS 65
                A  +  L       IIHRD+K  NILL+E+   +++D G AKV           S
Sbjct: 110 TRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANS 169

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
              KI       +  L    +  I+HRD+K  NILLD++   K++D G + 
Sbjct: 111 ETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSC 158

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 48.1 bits (114), Expect = 7e-08
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL--DENWVAKVSDLGLAKVGPNMLT 59
             ++      +GL ++     N  +H D+K  NI+     +   K+ D GL        +
Sbjct: 125 EAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS 181

Query: 60  LCCYQ 64
           +    
Sbjct: 182 VKVTT 186

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
                         YL       +I+RD+K  N+L+D+    +V+D G AK         
Sbjct: 142 HARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTL 198

Query: 62  CYQ 64
           C  
Sbjct: 199 CGT 201

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-07
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
                     +GL +        ++HRD+K  N+L++ N   K+++ GLA+     +   
Sbjct: 102 IVKSFLFQLLKGLGFC---HSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY 158

Query: 62  CYQSGTLGLVVDPFLRGK 79
             +  TL       L G 
Sbjct: 159 SAEVVTLWYRPPDVLFGA 176

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL 60
           +      +    G+ Y        ++HRD+K  N+L++     K++D GLA+     +  
Sbjct: 100 VTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK 156

Query: 61  CCYQSGTLGLVVDPFLRGK 79
             ++  TL       L G 
Sbjct: 157 YTHEIVTLWYRAPDVLMGS 175

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--ENWVAKVSDLGLAKVGPNMLTL 60
            +     A  GL ++     + I+H D+K  NI+ +  +    K+ D GLA        +
Sbjct: 129 VINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV 185

Query: 61  CCY 63
              
Sbjct: 186 KVT 188

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 5e-06
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLA-KVGPNMLT 59
               ++ I     +  L    +  II+RD+K  NILLD N    ++D GL+ +   +   
Sbjct: 126 FTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETE 185

Query: 60  LCCYQSGTLGLVVDPFLRGK 79
                 GT+  +    +RG 
Sbjct: 186 RAYDFCGTIEYMAPDIVRGG 205

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 9e-06
 Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 44/148 (29%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPNMLTL 60
                       + +        ++HRD+K  NIL+D N    K+ D G   +  +  T+
Sbjct: 111 LARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD--TV 165

Query: 61  CCYQSGT-----------------------LGLVVDPFLRGK---------------IDP 82
                GT                       LG+++   + G                   
Sbjct: 166 YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQ 225

Query: 83  GCFKTFTDIAKKCLADRGCDRPQMGDVL 110
                   + + CLA R  DRP   ++ 
Sbjct: 226 RVSSECQHLIRWCLALRPSDRPTFEEIQ 253

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 5/84 (5%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--ENWVAKVSDLGLAKVGPNMLTL 60
            +         L +L     + I H D++  NI+     +   K+ + G A+        
Sbjct: 104 IVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF 160

Query: 61  CCYQSGTLGLVVDPFLRGKIDPGC 84
               +       +      +    
Sbjct: 161 RLLFTAPEYYAPEVHQHDVVSTAT 184

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC 61
               +     +GL Y+       IIHRD+K  N+ ++E+   K+ D GLA+   + +T  
Sbjct: 122 RIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGY 178

Query: 62  C 62
            
Sbjct: 179 V 179

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAKVGPNMLT 59
             +I       + YL       I HRDVK  N+L      N + K++D G AK   +  +
Sbjct: 113 ASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS 169

Query: 60  LCCYQ 64
           L    
Sbjct: 170 LTTPC 174

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAK 52
           +         R L Y+       I HRD+K  N+LLD +  V K+ D G AK
Sbjct: 123 YVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK 171

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 8/77 (10%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-----NWVAKVSDLGLAKVGP 55
                        +  +       +++RD+K  N L+         +  V D G+ K   
Sbjct: 101 KTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 157

Query: 56  NMLTLCCYQSGTLGLVV 72
           + +T           + 
Sbjct: 158 DPVTKQHIPYREKKNLS 174

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAK 52
               ++       +          I+H D+   N+L+ E  +  + D   + 
Sbjct: 103 ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEEGI-WIIDFPQSV 150

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKV---GPNMLT 59
            +++   A + L++     +N IIHRDVK  NI++      KV D G+A+      N +T
Sbjct: 113 AIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVT 169

Query: 60  LCCYQSGTLGLVVDPFLRGK 79
                 GT   +     RG 
Sbjct: 170 QTAAVIGTAQYLSPEQARGD 189

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 4   LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCC 62
                   + L Y        I+HRDVK  N+++D E+   ++ D GLA+          
Sbjct: 132 RFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG-QEYN 187

Query: 63  YQSGTLGLVVDPFLRG 78
            +  +        L  
Sbjct: 188 VRVASRYFKGPELLVD 203

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNIL---LDENWVAKVSDLGLAKVGPNM 57
              L +       + Y+        IHRDVK  N L     +  +  + D GLAK   + 
Sbjct: 103 KTVLLLADQMISRIEYI---HSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 159

Query: 58  LTLCCYQSGTLGLVVDP 74
            T           +   
Sbjct: 160 RTHQHIPYRENKNLTGT 176

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILL---DENWVAKVSDLGLAKVGPNML 58
              ++       + YL       I+HRD+K  N+L    DE+    +SD GL+K+     
Sbjct: 108 DASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS 164

Query: 59  TLCCYQSGTLG 69
            L     GT G
Sbjct: 165 VLSTAC-GTPG 174

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 2   WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVG 54
           +  +I      GL Y+    R  IIH D+K  N+L++  +    +  + +A +G
Sbjct: 126 YVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLG 177

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 13/104 (12%)

Query: 3   RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCC 62
              +      G+ +L +      IHRD+K +NI++  +   K+ D GLA+       +  
Sbjct: 121 MSYLLYQMLCGIKHLHSAGI---IHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTP 177

Query: 63  YQSGTLGLVVDPFLRGKIDPGCFKTFTDIAKKCLADRGCDRPQM 106
           Y   T         R    P             +   GC   +M
Sbjct: 178 YV-VT---------RYYRAPEVILGMGYKENVDIWSVGCIMGEM 211

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 1   MWRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL 60
                +     RGL Y+       IIHRD+K +N+ ++E+   K+ D GLA+   + +T 
Sbjct: 121 DHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTG 177

Query: 61  CCY 63
              
Sbjct: 178 YVA 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.93
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.92
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.92
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.92
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.92
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.91
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.91
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.9
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.9
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.9
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.9
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.9
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.89
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.89
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.89
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.89
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.89
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.88
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.88
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.88
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.88
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.87
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.87
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.86
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.86
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.86
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.86
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.83
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.83
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.83
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.83
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.82
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.82
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.82
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.81
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.81
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.81
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.81
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.81
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.81
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.8
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.8
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.8
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.8
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.8
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.8
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.8
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.79
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.78
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.77
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.77
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.76
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.75
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.74
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.74
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.72
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.67
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.67
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.64
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.1
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	92.59
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	90.67
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	89.57
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	82.19

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-26  Score=165.06  Aligned_cols=116  Identities=23%  Similarity=0.334  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---eeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---LCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~   78 (154)
                      ++++++.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++.......   ......|++.|++||.+.+
T Consensus       111 ~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  187 (283)
T d1mqba_         111 QLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISY  187 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHS
T ss_pred             HHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHcc
Confidence            467899999999999994   5599999999999999999999999999987654221   1122346677777776543


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                   +.+.+++.++.+|+.+||+.||++||+|.||++.|
T Consensus       188 ~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L  267 (283)
T d1mqba_         188 RKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL  267 (283)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHH
Confidence                                                         33456788999999999999999999999999999


Q ss_pred             HHHHHhc
Q 044888          114 GLAWRQQ  120 (154)
Q Consensus       114 ~~~~~~~  120 (154)
                      +.+.+..
T Consensus       268 ~~l~~~p  274 (283)
T d1mqba_         268 DKLIRAP  274 (283)
T ss_dssp             HHHHHSG
T ss_pred             HHHhhCc
Confidence            9988754

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-26  Score=164.70  Aligned_cols=115  Identities=30%  Similarity=0.494  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ++++|+.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++.......  ......|++.|++||.+.+ 
T Consensus       105 ~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  181 (276)
T d1uwha_         105 KLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQ  181 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcc
Confidence            468899999999999995   5599999999999999999999999999987654221  2223467888888887632 


Q ss_pred             ---------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH
Q 044888           79 ---------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG  107 (154)
Q Consensus        79 ---------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~  107 (154)
                                                                         ..+.+++.++.+|+.+||+.||++||||.
T Consensus       182 ~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~  261 (276)
T d1uwha_         182 DKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFP  261 (276)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHH
Confidence                                                               11234678899999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 044888          108 DVLCNLGLAWRQ  119 (154)
Q Consensus       108 ~v~~~L~~~~~~  119 (154)
                      ||++.|+.+.+.
T Consensus       262 ~il~~Le~l~~~  273 (276)
T d1uwha_         262 QILASIELLARS  273 (276)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999988764

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-26  Score=163.94  Aligned_cols=115  Identities=23%  Similarity=0.296  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ++++++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++....... ......|+..|++||.+.+  
T Consensus       102 ~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~  178 (263)
T d1sm2a_         102 TLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR  178 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcCCC
Confidence            467899999999999994   5599999999999999999999999999987654221 2223456677777776543  


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                 ..+..++.++.+|+..||+.||++||||.||++.|++
T Consensus       179 ~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~  258 (263)
T d1sm2a_         179 YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAE  258 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHH
Confidence                                                       2345678899999999999999999999999999999


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       259 i~es  262 (263)
T d1sm2a_         259 IAES  262 (263)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8763

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-26  Score=166.69  Aligned_cols=115  Identities=21%  Similarity=0.253  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      +++.++.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++.......  ......|+..|++||.+.+ 
T Consensus       135 ~~~~~~~qi~~gl~ylH~---~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  211 (299)
T d1ywna1         135 HLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR  211 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcC
Confidence            467889999999999994   5599999999999999999999999999986543221  1223356666776665432 


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                   ..+..++.++.+++.+||+.||++|||+.||+++|
T Consensus       212 ~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L  291 (299)
T d1ywna1         212 VYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  291 (299)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence                                                         23445778899999999999999999999999999


Q ss_pred             HHHHHh
Q 044888          114 GLAWRQ  119 (154)
Q Consensus       114 ~~~~~~  119 (154)
                      +.+++.
T Consensus       292 ~~ilq~  297 (299)
T d1ywna1         292 GNLLQA  297 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            998764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1e-25  Score=163.57  Aligned_cols=115  Identities=23%  Similarity=0.334  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce-----eeecccccccccCccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL-----CCYQSGTLGLVVDPFL   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~g~~~~~~~~~~   76 (154)
                      ++++++.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++........     .....|++.|++||.+
T Consensus       129 ~~~~i~~qia~gl~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  205 (299)
T d1jpaa_         129 QLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAI  205 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh---CCCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHH
Confidence            467899999999999994   55999999999999999999999999999876542111     1112344555555543


Q ss_pred             cC---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           77 RG---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        77 ~~---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+                                             +.+.+++.++.+|+.+||+.||++||||.||++
T Consensus       206 ~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~  285 (299)
T d1jpaa_         206 QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVN  285 (299)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             hcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            22                                             344567889999999999999999999999999


Q ss_pred             HHHHHHHh
Q 044888          112 NLGLAWRQ  119 (154)
Q Consensus       112 ~L~~~~~~  119 (154)
                      .|+++++.
T Consensus       286 ~L~~~l~~  293 (299)
T d1jpaa_         286 TLDKMIRN  293 (299)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHhcC
Confidence            99998764

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-25  Score=160.90  Aligned_cols=114  Identities=19%  Similarity=0.278  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~--   78 (154)
                      .+++|+.||+.||.|||+   .+++||||||.||+++.++.+||+|||+++....... ......|++.|++||.+.+  
T Consensus       110 ~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~  186 (272)
T d1qpca_         110 KLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT  186 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccChHHHhCCC
Confidence            478899999999999994   5599999999999999999999999999987754321 1122345666666665532  


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                 ..+..++.++.+|+.+||+.||++||||.+|++.|+.
T Consensus       187 ~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~  266 (272)
T d1qpca_         187 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLED  266 (272)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhh
Confidence                                                       2345678899999999999999999999999999998


Q ss_pred             HHH
Q 044888          116 AWR  118 (154)
Q Consensus       116 ~~~  118 (154)
                      ...
T Consensus       267 ~ft  269 (272)
T d1qpca_         267 FFT  269 (272)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.6e-26  Score=162.79  Aligned_cols=114  Identities=20%  Similarity=0.313  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~--   78 (154)
                      .+++|+.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++....... ......|++.+++||.+.+  
T Consensus       116 ~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~  192 (287)
T d1opja_         116 VLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK  192 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCC
Confidence            467899999999999994   5699999999999999999999999999987654322 1222234555555554422  


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                 ..+..++.++.+|+..||+.||++|||+.||++.|+.
T Consensus       193 ~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~  272 (287)
T d1opja_         193 FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFET  272 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence                                                       3445678899999999999999999999999999987


Q ss_pred             HHH
Q 044888          116 AWR  118 (154)
Q Consensus       116 ~~~  118 (154)
                      +.+
T Consensus       273 ~~~  275 (287)
T d1opja_         273 MFQ  275 (287)
T ss_dssp             TTS
T ss_pred             HHH
Confidence            654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.3e-25  Score=163.01  Aligned_cols=113  Identities=21%  Similarity=0.262  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .++.|+.|++.||+|||   ..+++||||||.|||++.++.+||+|||+++......  .......|++.+++||.+.+ 
T Consensus       141 ~~~~i~~qi~~gl~ylH---~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  217 (301)
T d1lufa_         141 EQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYN  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhcc---cCCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccC
Confidence            47889999999999999   4559999999999999999999999999987653321  11112234444544443322 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  +.+..++.++.+|+..||+.+|++||||.||++.|+
T Consensus       218 ~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~  297 (301)
T d1lufa_         218 RYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQ  297 (301)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence                                                        345567889999999999999999999999999999


Q ss_pred             HHH
Q 044888          115 LAW  117 (154)
Q Consensus       115 ~~~  117 (154)
                      ++.
T Consensus       298 ~i~  300 (301)
T d1lufa_         298 RMC  300 (301)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            874

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.8e-25  Score=157.59  Aligned_cols=114  Identities=21%  Similarity=0.260  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---eeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---LCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~   78 (154)
                      ++++++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.......   ......|++.+++||.+.+
T Consensus       110 ~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  186 (285)
T d1u59a_         110 NVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF  186 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhC
Confidence            468899999999999995   5599999999999999999999999999987654211   1112234445555543321


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                   +.++.++.++.+|+..||+.||++||+|.+|++.|
T Consensus       187 ~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L  266 (285)
T d1u59a_         187 RKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  266 (285)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence                                                         34567889999999999999999999999999999


Q ss_pred             HHHHH
Q 044888          114 GLAWR  118 (154)
Q Consensus       114 ~~~~~  118 (154)
                      +.+..
T Consensus       267 ~~~~~  271 (285)
T d1u59a_         267 RACYY  271 (285)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97764

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.2e-25  Score=161.40  Aligned_cols=110  Identities=21%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .++.++.|++.||.|||+   .+|+||||||.||+++.++.+||+|||+++.......  ......|++.|++||.+.+ 
T Consensus       165 ~~~~i~~qi~~gl~yLH~---~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~  241 (325)
T d1rjba_         165 DLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEG  241 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh---CCeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCC
Confidence            367799999999999995   5599999999999999999999999999976543221  1112234555655554421 


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                   +.+..++.++.+|+.+||+.||++||||.||++.|
T Consensus       242 ~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L  321 (325)
T d1rjba_         242 IYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  321 (325)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence                                                         34556788999999999999999999999999998


Q ss_pred             H
Q 044888          114 G  114 (154)
Q Consensus       114 ~  114 (154)
                      .
T Consensus       322 ~  322 (325)
T d1rjba_         322 G  322 (325)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=155.27  Aligned_cols=113  Identities=21%  Similarity=0.284  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce---eeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL---CCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~   78 (154)
                      ++++++.|++.||.|||+   .+++||||||.||+++.++.+|++|||+++......+.   .....|++.|++||.+.+
T Consensus       108 ~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~  184 (277)
T d1xbba_         108 NIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY  184 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcC
Confidence            468899999999999995   55999999999999999999999999999876543221   112345566666654422


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                   +.+..++.++.+|+.+||+.||++||||.+|+..|
T Consensus       185 ~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L  264 (277)
T d1xbba_         185 YKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  264 (277)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHh
Confidence                                                         34566789999999999999999999999999999


Q ss_pred             HHHH
Q 044888          114 GLAW  117 (154)
Q Consensus       114 ~~~~  117 (154)
                      +...
T Consensus       265 ~~~~  268 (277)
T d1xbba_         265 RNYY  268 (277)
T ss_dssp             HHHH
T ss_pred             hCHH
Confidence            8764

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.9e-25  Score=157.83  Aligned_cols=116  Identities=23%  Similarity=0.312  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      +++.++.||+.||.|||   ..+++||||||.||+++.++.+||+|||+++...... .......|+..+++||.+..  
T Consensus       114 ~~~~i~~~i~~gl~~LH---~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  190 (285)
T d1fmka3         114 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR  190 (285)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHh---hhheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCC
Confidence            57899999999999999   4569999999999999999999999999998764321 11222334555555554421  


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                 +.+..++.++.+++.+||+.||++||+|.+|+++|+.
T Consensus       191 ~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~  270 (285)
T d1fmka3         191 FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED  270 (285)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhh
Confidence                                                       4556788999999999999999999999999999987


Q ss_pred             HHHhc
Q 044888          116 AWRQQ  120 (154)
Q Consensus       116 ~~~~~  120 (154)
                      .....
T Consensus       271 ~~~~~  275 (285)
T d1fmka3         271 YFTST  275 (285)
T ss_dssp             TTSCS
T ss_pred             hhcCC
Confidence            65443

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-24  Score=159.16  Aligned_cols=114  Identities=22%  Similarity=0.325  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcce--eeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTL--CCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-   78 (154)
                      .+++++.||+.||.|||+   .+++||||||.||+++.++.+||+|||+++........  .....|+..|++||.+.+ 
T Consensus       112 ~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  188 (317)
T d1xkka_         112 YLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHR  188 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcC
Confidence            467899999999999994   56999999999999999999999999999876442211  112245566666664422 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  +.+..++.++.+|+.+||+.||++|||+.||+..|+
T Consensus       189 ~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~  268 (317)
T d1xkka_         189 IYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFS  268 (317)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHH
Confidence                                                        345568889999999999999999999999999998


Q ss_pred             HHHH
Q 044888          115 LAWR  118 (154)
Q Consensus       115 ~~~~  118 (154)
                      .+..
T Consensus       269 ~~~~  272 (317)
T d1xkka_         269 KMAR  272 (317)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-24  Score=153.13  Aligned_cols=111  Identities=22%  Similarity=0.257  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc-ceeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML-TLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      .+++++.|+++||.|||   ..+++||||++.||+++.++.+||+|||+++...... .......|+..+++||.+.+  
T Consensus       101 ~~~~i~~qi~~gl~~LH---~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  177 (258)
T d1k2pa_         101 QLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSK  177 (258)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHh---hcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCC
Confidence            47889999999999999   4569999999999999999999999999997654321 11222334555555554422  


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                 ..+..++.++.+++.+||+.||++||||.+|++.|..
T Consensus       178 ~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         178 FSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             CCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence                                                       3445677899999999999999999999999998864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-24  Score=156.43  Aligned_cols=115  Identities=19%  Similarity=0.295  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc----eeeecccccccccCcccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT----LCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~g~~~~~~~~~~~   77 (154)
                      .+++++.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++.......    ......|+..+++||.+.
T Consensus       131 ~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  207 (311)
T d1r0pa_         131 DLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ  207 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHh
Confidence            478899999999999994   5599999999999999999999999999987643211    111123444444444332


Q ss_pred             C---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           78 G---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        78 ~---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      .                                             ..+..++.++.+|+.+||+.||++||+|.||++.
T Consensus       208 ~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         208 TQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            1                                             2345677899999999999999999999999999


Q ss_pred             HHHHHHh
Q 044888          113 LGLAWRQ  119 (154)
Q Consensus       113 L~~~~~~  119 (154)
                      |+.+.+.
T Consensus       288 L~~i~~~  294 (311)
T d1r0pa_         288 ISAIFST  294 (311)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999764

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-24  Score=154.51  Aligned_cols=115  Identities=19%  Similarity=0.307  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc-eeeecccccccccCccccC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT-LCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~--   78 (154)
                      +++.++.|++.||.|||+   .+++||||||.||+++.++.+|++|||+++....... ......|++.+++||.+.+  
T Consensus       109 ~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~  185 (273)
T d1mp8a_         109 SLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRR  185 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCC
Confidence            467889999999999994   5599999999999999999999999999987643211 1112233444444433321  


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGL  115 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~  115 (154)
                                                                 +.++.++.++.+|+.+||+.||++|||+.||++.|+.
T Consensus       186 ~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~  265 (273)
T d1mp8a_         186 FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLST  265 (273)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence                                                       3456788999999999999999999999999999998


Q ss_pred             HHHh
Q 044888          116 AWRQ  119 (154)
Q Consensus       116 ~~~~  119 (154)
                      +.+.
T Consensus       266 i~~~  269 (273)
T d1mp8a_         266 ILEE  269 (273)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-24  Score=156.98  Aligned_cols=113  Identities=16%  Similarity=0.261  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee--eecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC--CYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~-   78 (154)
                      ++++++.|++.||.|||+   .+++|||||+.|||++.++.+||+|||+++.........  ....|+..+++|+.+.+ 
T Consensus       134 ~~~~i~~~ia~gl~~LH~---~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~  210 (308)
T d1p4oa_         134 KMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG  210 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhh---CCeeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccC
Confidence            468899999999999995   459999999999999999999999999998764422111  11123444444443321 


Q ss_pred             --------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           79 --------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        79 --------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                  +.+..++..+.+|+.+||+.+|++||||.+|++.|+
T Consensus       211 ~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~  290 (308)
T d1p4oa_         211 VFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  290 (308)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHG
T ss_pred             CCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence                                                        334567889999999999999999999999999987


Q ss_pred             HHH
Q 044888          115 LAW  117 (154)
Q Consensus       115 ~~~  117 (154)
                      +..
T Consensus       291 ~~~  293 (308)
T d1p4oa_         291 EEM  293 (308)
T ss_dssp             GGS
T ss_pred             Hhc
Confidence            653

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.9e-24  Score=153.72  Aligned_cols=115  Identities=21%  Similarity=0.274  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCcccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLR--   77 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--   77 (154)
                      ++++++.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++.......  ......+++.|++||.+.  
T Consensus       136 ~~~~~~~qi~~al~ylH~---~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~  212 (299)
T d1fgka_         136 DLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDR  212 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhh---CCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCC
Confidence            467899999999999994   5599999999999999999999999999886643211  111123344444443332  


Q ss_pred             -------------------------------------------CCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044888           78 -------------------------------------------GKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLG  114 (154)
Q Consensus        78 -------------------------------------------~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~  114 (154)
                                                                 ...+..++.++.+|+.+||+.||++|||+.||++.|+
T Consensus       213 ~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~  292 (299)
T d1fgka_         213 IYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD  292 (299)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHH
Confidence                                                       1445567889999999999999999999999999999


Q ss_pred             HHHHh
Q 044888          115 LAWRQ  119 (154)
Q Consensus       115 ~~~~~  119 (154)
                      ++...
T Consensus       293 ~i~a~  297 (299)
T d1fgka_         293 RIVAL  297 (299)
T ss_dssp             HHHHH
T ss_pred             HHhhc
Confidence            98764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-23  Score=152.44  Aligned_cols=115  Identities=26%  Similarity=0.446  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      ++++++.|++.||.|||   ..+++||||||.|||++.++.+||+|||+++......+ .....|+..+++||.+     
T Consensus       128 ~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~-~~~~~gt~~y~aPE~l~~~~~  203 (309)
T d1fvra_         128 QLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK-KTMGRLPVRWMAIESLNYSVY  203 (309)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECC-C----CCTTTCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCCCceEEcccccccccccccc-ccceecCCcccchHHhccCCC
Confidence            46789999999999999   45699999999999999999999999999876543211 0111233333333322     


Q ss_pred             ----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 044888           77 ----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        77 ----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~  116 (154)
                                                              +...+..++.++.+|+.+||+.||++||||.||++.|+.+
T Consensus       204 ~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i  283 (309)
T d1fvra_         204 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  283 (309)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                                                    2244567889999999999999999999999999999999


Q ss_pred             HHhc
Q 044888          117 WRQQ  120 (154)
Q Consensus       117 ~~~~  120 (154)
                      .+..
T Consensus       284 ~~~~  287 (309)
T d1fvra_         284 LEER  287 (309)
T ss_dssp             HHSS
T ss_pred             HhcC
Confidence            8644

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-23  Score=151.31  Aligned_cols=120  Identities=26%  Similarity=0.332  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHHHHhhcC-----CCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc----eeeeccccccccc
Q 044888            2 WRLKICIGAARGLHYLRTG-----TRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT----LCCYQSGTLGLVV   72 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~-----~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~g~~~~~~   72 (154)
                      ++++++.|++.||.|+|+.     ..++|+||||||.|||++.++.+||+|||+++.......    ......|+..|++
T Consensus       101 ~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~a  180 (303)
T d1vjya_         101 GMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA  180 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCC
Confidence            5789999999999999963     136799999999999999999999999999987644221    1123456677777


Q ss_pred             CccccC------------------------------------------------------------------CC-----C
Q 044888           73 DPFLRG------------------------------------------------------------------KI-----D   81 (154)
Q Consensus        73 ~~~~~~------------------------------------------------------------------~~-----~   81 (154)
                      ||.+.+                                                                  ..     +
T Consensus       181 PE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  260 (303)
T d1vjya_         181 PEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQS  260 (303)
T ss_dssp             HHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGG
T ss_pred             hhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccCC
Confidence            665432                                                                  00     1


Q ss_pred             cchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhcC
Q 044888           82 PGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus        82 ~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~~~~~~  121 (154)
                      .+....+.+|+.+||+.||++||||.||++.|+++.+...
T Consensus       261 ~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~~  300 (303)
T d1vjya_         261 CEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG  300 (303)
T ss_dssp             CHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHhcC
Confidence            1234568999999999999999999999999999886543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-23  Score=149.63  Aligned_cols=112  Identities=23%  Similarity=0.294  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCccee---eecccccccccCccc--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLC---CYQSGTLGLVVDPFL--   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~~~~g~~~~~~~~~~--   76 (154)
                      .+++++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.........   ....|+..+++||.+  
T Consensus       112 ~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  188 (273)
T d1u46a_         112 TLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKT  188 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhC
Confidence            467899999999999995   559999999999999999999999999998764431110   011122233332222  


Q ss_pred             --------------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           77 --------------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        77 --------------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                                                                  +.+.+..++.++.+|+.+||+.||++||||.+|++.
T Consensus       189 ~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~  268 (273)
T d1u46a_         189 RTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF  268 (273)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                                        113445678899999999999999999999999998


Q ss_pred             HHHH
Q 044888          113 LGLA  116 (154)
Q Consensus       113 L~~~  116 (154)
                      |++.
T Consensus       269 L~~~  272 (273)
T d1u46a_         269 LLEA  272 (273)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-23  Score=150.73  Aligned_cols=106  Identities=24%  Similarity=0.299  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   +.+++||||||.||+++.++.+||+|||+++.............|+..|++||.+.+    
T Consensus       118 ~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~  194 (293)
T d1yhwa1         118 IAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYG  194 (293)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBC
T ss_pred             HHHHHHHHHHHHHHHH---HCCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCC
Confidence            4678999999999999   456999999999999999999999999999887654444455678888999887765    


Q ss_pred             ------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                ..+...+.++.+++.+||+.||++|||+.|+++
T Consensus       195 ~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         195 PKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             chhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                                      122345678999999999999999999999864

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-23  Score=148.16  Aligned_cols=112  Identities=25%  Similarity=0.351  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccc-----
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFL-----   76 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~-----   76 (154)
                      ++++|+.||+.||.|||+   .+++||||+|.||+++.++.+|++|||+++.......   ...++..+++||.+     
T Consensus       104 ~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~---~~~~~~~y~aPE~l~~~~~  177 (262)
T d1byga_         104 CLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---TGKLPVKWTAPEALREKKF  177 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCC
T ss_pred             HHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeecccccceecCCCCc---cccccccCCChHHHhCCCC
Confidence            478899999999999994   5699999999999999999999999999987543211   11122222222222     


Q ss_pred             ----------------------------------------cCCCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 044888           77 ----------------------------------------RGKIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNLGLA  116 (154)
Q Consensus        77 ----------------------------------------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L~~~  116 (154)
                                                              +.+.+..++.++.+|+.+||+.||.+||||.+|+++|+++
T Consensus       178 t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i  257 (262)
T d1byga_         178 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI  257 (262)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence                                                    2245667788999999999999999999999999999988


Q ss_pred             HHh
Q 044888          117 WRQ  119 (154)
Q Consensus       117 ~~~  119 (154)
                      ...
T Consensus       258 ~~~  260 (262)
T d1byga_         258 KTH  260 (262)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            653

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-23  Score=151.33  Aligned_cols=115  Identities=21%  Similarity=0.247  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc--eeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT--LCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-   78 (154)
                      .+++++.|++.||.|||   ..+++||||||.||+++.++.+|++|||+++.......  ......|++.+++||.+.. 
T Consensus       146 ~~~~~~~qi~~gl~~LH---~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  222 (311)
T d1t46a_         146 DLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNC  222 (311)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCC
Confidence            46789999999999999   45599999999999999999999999999987654211  1122334455555544321 


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLCNL  113 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~~L  113 (154)
                                                                   ..+..++.++.+|+.+||+.||++||||.+|+++|
T Consensus       223 ~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L  302 (311)
T d1t46a_         223 VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI  302 (311)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence                                                         33455778999999999999999999999999999


Q ss_pred             HHHHHh
Q 044888          114 GLAWRQ  119 (154)
Q Consensus       114 ~~~~~~  119 (154)
                      ++++..
T Consensus       303 ~~~i~~  308 (311)
T d1t46a_         303 EKQISE  308 (311)
T ss_dssp             HHHHHH
T ss_pred             HHhhcc
Confidence            987654

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.2e-23  Score=146.65  Aligned_cols=104  Identities=24%  Similarity=0.343  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.....  ......|++.|++||.+.+    
T Consensus       108 ~~~i~~qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~--~~~~~~Gt~~Y~APE~~~~~~~~  182 (263)
T d2j4za1         108 TATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRTTLCGTLDYLPPEMIEGRMHD  182 (263)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCC--CCEETTEEGGGCCHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHH---CCeeeeeeccccceecCCCCEeecccceeeecCCC--cccccCCCCcccCHHHHcCCCCC
Confidence            56789999999999994   55999999999999999999999999999876543  2334578899999988765    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                             ..+...+.++.+++.+||+.||++|||+.|+++
T Consensus       183 ~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         183 EKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             chhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence                                                   234456788999999999999999999999975

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-23  Score=149.84  Aligned_cols=110  Identities=20%  Similarity=0.301  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCC--CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-
Q 044888            2 WRLKICIGAARGLHYLRTGT--RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~--~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ....++.|++.||.|||+..  ..+|+||||||.||+++.++.+||+|||+++.............|++.|++||.+.+ 
T Consensus       110 ~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~  189 (269)
T d2java1         110 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRM  189 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCC
Confidence            35678999999999999642  245999999999999999999999999999887654444445678888888887754 


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                 ..+...+.++.+|+.+||+.||++|||+.|+++
T Consensus       190 ~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         190 SYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence                                                       233456788999999999999999999999874

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-22  Score=145.17  Aligned_cols=106  Identities=28%  Similarity=0.259  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCccccCC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLRGK-   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~-   79 (154)
                      ...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++......  .......|++.|++||.+.+. 
T Consensus       105 ~~~i~~qi~~al~ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~  181 (271)
T d1nvra_         105 AQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRRE  181 (271)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHH---cCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCC
Confidence            46789999999999994   559999999999999999999999999998764321  122345689999999987540 


Q ss_pred             ----------------------------------------------CCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 ----------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 ----------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                    .....+.++.+++.+||+.||++|||+.|+++
T Consensus       182 ~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         182 FHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                                                          11244678889999999999999999999864

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.5e-23  Score=149.32  Aligned_cols=107  Identities=25%  Similarity=0.283  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||+   .+++||||||.||+++.++.+||+|||+++.............|++.|++||.+.+   
T Consensus       111 ~~~~i~~qi~~gL~ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~  187 (288)
T d2jfla1         111 QIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETS  187 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCST
T ss_pred             HHHHHHHHHHHHHHHHHH---CCEEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhccc
Confidence            356789999999999995   55999999999999999999999999999765432222234567777888776521   


Q ss_pred             ------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHH
Q 044888           79 ------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVL  110 (154)
Q Consensus        79 ------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~  110 (154)
                                                                      ..+...+.++.+++.+||+.||++|||+.|++
T Consensus       188 ~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell  267 (288)
T d2jfla1         188 KDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLL  267 (288)
T ss_dssp             TTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             CCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence                                                            11235678899999999999999999999986


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      +
T Consensus       268 ~  268 (288)
T d2jfla1         268 Q  268 (288)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.2e-22  Score=147.80  Aligned_cols=103  Identities=29%  Similarity=0.342  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||   ..+++||||||.|||++.++.+||+|||+++.....    ....|++.|++||.+.+   
T Consensus       116 ~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~----~~~~GT~~Y~APE~~~~~~~  188 (309)
T d1u5ra_         116 EIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----NSFVGTPYWMAPEVILAMDE  188 (309)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB----CCCCSCGGGCCHHHHTTTTS
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEECCCCCEEEeecccccccCCC----CccccCccccCHHHHhccCC
Confidence            35678999999999999   456999999999999999999999999999876442    24568888999887632   


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                   ..+...+.++.+++.+||+.||++|||+.|+++
T Consensus       189 ~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         189 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence                                                         112245778999999999999999999999975

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.4e-22  Score=143.66  Aligned_cols=106  Identities=26%  Similarity=0.392  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec-CCCcEEEecCCCcccCCCCcceeeecccccccccCccccCCC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD-ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGKI-   80 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-   80 (154)
                      ...++.|++.||.|||+. ..+++||||||.|||++ .++.+||+|||+++......  .....|++.|++||.+.+.+ 
T Consensus       114 ~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~--~~~~~GT~~Y~aPE~~~~~~~  190 (270)
T d1t4ha_         114 LRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF--AKAVIGTPEFMAPEMYEEKYD  190 (270)
T ss_dssp             HHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS--BEESCSSCCCCCGGGGGTCCC
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCc--cCCcccCccccCHHHhCCCCC
Confidence            467899999999999954 24499999999999996 57899999999998765432  23457899999998876511 


Q ss_pred             --------------------------------------------CcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           81 --------------------------------------------DPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        81 --------------------------------------------~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                  +...+.++.+|+.+||+.||++|||+.|+++
T Consensus       191 ~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         191 ESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence                                                        1224567899999999999999999999975

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=4.7e-21  Score=138.47  Aligned_cols=116  Identities=22%  Similarity=0.193  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec---CCCcEEEecCCCcccCCCCcc-------eeeecccccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAKVGPNMLT-------LCCYQSGTLGLV   71 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~---~~~~~kl~dfg~~~~~~~~~~-------~~~~~~g~~~~~   71 (154)
                      +.+.++.|++.||+|||   ..+++||||||.||+++   .+..+|++|||+++......+       ......|+..|+
T Consensus       104 ~~~~~~~qi~~~l~~lH---~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  180 (299)
T d1ckia_         104 TVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYA  180 (299)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSC
T ss_pred             HHHHHHHHHHHHHHHHH---HCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCcccc
Confidence            45788999999999999   45699999999999875   345799999999987654322       122346788888


Q ss_pred             cCccccCC------------------------C---------------------------CcchHHHHHHHHHHhhccCC
Q 044888           72 VDPFLRGK------------------------I---------------------------DPGCFKTFTDIAKKCLADRG  100 (154)
Q Consensus        72 ~~~~~~~~------------------------~---------------------------~~~~~~~~~~l~~~C~~~~p  100 (154)
                      +||.+.+.                        +                           ...++.++.+++..||+.+|
T Consensus       181 aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p  260 (299)
T d1ckia_         181 SINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRF  260 (299)
T ss_dssp             CHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCT
T ss_pred             CHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCCh
Confidence            88876540                        0                           12356788999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhc
Q 044888          101 CDRPQMGDVLCNLGLAWRQQ  120 (154)
Q Consensus       101 ~~RP~~~~v~~~L~~~~~~~  120 (154)
                      ++||++.++.+.|+.+....
T Consensus       261 ~~RP~~~~i~~~l~~~~~~~  280 (299)
T d1ckia_         261 DDKPDYSYLRQLFRNLFHRQ  280 (299)
T ss_dssp             TCCCCHHHHHHHHHHHHHHH
T ss_pred             hHCcCHHHHHHHHHHHHHHc
Confidence            99999999999999876543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.8e-21  Score=139.96  Aligned_cols=105  Identities=20%  Similarity=0.195  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-----
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-----   78 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----   78 (154)
                      ..++.|++.||.|||   +.+++||||||.|||++.++.+||+|||+++.............|+..|++||.+.+     
T Consensus       108 ~~~~~qil~al~ylH---~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~  184 (337)
T d1o6la_         108 RFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  184 (337)
T ss_dssp             HHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCT
T ss_pred             HHHHHHHhhhhhhhh---hcCccccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCCh
Confidence            457899999999999   556999999999999999999999999999876554444445678999999998865     


Q ss_pred             --------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HHHHHH
Q 044888           79 --------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MGDVLC  111 (154)
Q Consensus        79 --------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~~v~~  111 (154)
                                                            .++...+.++.+++..||+.||.+||+     +.|+++
T Consensus       185 ~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         185 AVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             THHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             hhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence                                                  345567888999999999999999995     677764

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-21  Score=138.84  Aligned_cols=104  Identities=21%  Similarity=0.245  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|||   +.+++||||||.||+++.+ +.+|++|||+++.....  ......|+..+++||.+.+   
T Consensus       112 ~~~~~~qi~~al~~lH---~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~--~~~~~~GT~~y~aPE~~~~~~~  186 (273)
T d1xwsa_         112 ARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDT--VYTDFDGTRVYSPPEWIRYHRY  186 (273)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSS--CBCCCCSCGGGSCHHHHHHSCB
T ss_pred             HHHHHHHHHHHHHHHH---HCCCccccCcccceEEecCCCeEEECccccceecccc--cccccccCCCcCCHHHHcCCCC
Confidence            4578999999999999   5569999999999999854 78999999999876543  2234568888888887643   


Q ss_pred             -----------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                         ..+...+.++.+++.+||+.||++|||+.|+++
T Consensus       187 ~~~~~DiwSlGvilyell~g~~Pf~~~~~i~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         187 HGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCcccccccceeeehhHhhCCCCCCCchHHhhcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence                                               234456788999999999999999999999975

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-21  Score=140.92  Aligned_cols=106  Identities=26%  Similarity=0.275  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc--ceeeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML--TLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+|++|||+++......  .......|++.|++||.+.+  
T Consensus       110 ~~~~~~qi~~al~ylH---~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~  186 (288)
T d1uu3a_         110 TRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKS  186 (288)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhhc---cccEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCC
Confidence            4568899999999999   4569999999999999999999999999998765422  12233468889999888754  


Q ss_pred             -----------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                               ..+...+.++.+|+.+||+.||++|||+.|+..
T Consensus       187 ~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         187 ACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             CCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence                                                     234566788999999999999999999999754

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.3e-21  Score=138.71  Aligned_cols=107  Identities=28%  Similarity=0.303  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC--
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK--   79 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--   79 (154)
                      ....++.|++.||.|||   ..+++||||||.||+++.++.+||+|||+++.............|+..|++||.+.+.  
T Consensus       101 ~~~~~~~qil~aL~~lH---~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  177 (299)
T d1ua2a_         101 HIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM  177 (299)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHHHhh---ccceecccCCcceEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccCCC
Confidence            35678999999999999   4569999999999999999999999999998766543333344567777777765320  


Q ss_pred             -----------------------CC-----------------------------------------------cchHHHHH
Q 044888           80 -----------------------ID-----------------------------------------------PGCFKTFT   89 (154)
Q Consensus        80 -----------------------~~-----------------------------------------------~~~~~~~~   89 (154)
                                             ++                                               +..+.++.
T Consensus       178 ~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  257 (299)
T d1ua2a_         178 YGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLL  257 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHH
T ss_pred             CChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHH
Confidence                                   00                                               12346788


Q ss_pred             HHHHHhhccCCCCCCCHHHHHH
Q 044888           90 DIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        90 ~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      +++.+||+.||++|||+.|+++
T Consensus       258 dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         258 DLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             HHHHHHHCSSTTTSCCHHHHHT
T ss_pred             HHHHHHccCChhhCcCHHHHhC
Confidence            9999999999999999999874

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=4.2e-21  Score=139.48  Aligned_cols=105  Identities=22%  Similarity=0.252  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec---CCCcEEEecCCCcccCCCCcceeeecccccccccCccccC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD---ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~---~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ...++.|++.||.|||   ..+++||||||.||++.   .++.+|++|||+++..... .......|++.|++||.+.+ 
T Consensus       109 ~~~~~~qi~~al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~-~~~~~~~GT~~y~APE~~~~~  184 (307)
T d1a06a_         109 ASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPG-SVLSTACGTPGYVAPEVLAQK  184 (307)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC-------------------CTTSCHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeEEccCC-CeeeeeeeCccccCcHHHcCC
Confidence            4678999999999999   45699999999999994   4688999999999876542 22234568888998888754 


Q ss_pred             ----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                    +.....+.++.+++.+||+.||++|||+.|+++
T Consensus       185 ~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         185 PYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence                                                          112346778999999999999999999999976

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=1.3e-20  Score=139.71  Aligned_cols=104  Identities=23%  Similarity=0.218  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||||.|||++.++.+||+|||+++......  .....|+..|++||.+..    
T Consensus       109 ~~~~~~qi~~aL~ylH---~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~--~~~~~GT~~y~APE~~~~~~~~  183 (364)
T d1omwa3         109 MRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGVAY  183 (364)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC--CCSCCSCGGGCCHHHHSTTCCC
T ss_pred             HHHHHHHHHHHHHHHH---HCCccceeeccceeEEcCCCcEEEeeeceeeecCCCc--ccccccccccchhHHhhcCCCC
Confidence            4568899999999999   5569999999999999999999999999998765432  233468888888887642    


Q ss_pred             -------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HHHHH
Q 044888           79 -------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MGDVL  110 (154)
Q Consensus        79 -------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~~v~  110 (154)
                                                                 ..+...+.++.+++.+||+.||++||+     +.|++
T Consensus       184 ~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil  263 (364)
T d1omwa3         184 DSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVK  263 (364)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHH
T ss_pred             CcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHH
Confidence                                                       223456788999999999999999999     47775


Q ss_pred             H
Q 044888          111 C  111 (154)
Q Consensus       111 ~  111 (154)
                      +
T Consensus       264 ~  264 (364)
T d1omwa3         264 E  264 (364)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.81  E-value=7.7e-21  Score=140.32  Aligned_cols=105  Identities=22%  Similarity=0.255  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec--CCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK-   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~--~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-   79 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++  .++.+||+|||+++..... .......|+..|++||.+.+. 
T Consensus       126 ~~~i~~qi~~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~-~~~~~~~gT~~Y~aPEv~~~~~  201 (350)
T d1koaa2         126 AVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVAEGKP  201 (350)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT-SCEEEECSCTTTCCHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheecccc-cccceecCcccccCHHHHcCCC
Confidence            4678999999999999   45699999999999995  4578999999999876553 223345678888888877540 


Q ss_pred             ------------------------------------------CC----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           80 ------------------------------------------ID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        80 ------------------------------------------~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                .+    ...+.++.+++.+||+.||++|||+.|+++
T Consensus       202 ~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         202 VGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             BCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             CChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                                      01    235678899999999999999999999976

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.2e-20  Score=136.11  Aligned_cols=103  Identities=26%  Similarity=0.319  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||   ..+++||||||.|||++.++.+||+|||+++......   ....|+..|++||.+.+    
T Consensus       106 ~~~~~~qi~~al~~lH---~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~---~~~~Gt~~Y~APE~l~~~~y~  179 (316)
T d1fota_         106 AKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT---YTLCGTPDYIAPEVVSTKPYN  179 (316)
T ss_dssp             HHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB---CCCCSCTTTCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHhhhhhc---cCcEEccccCchheeEcCCCCEEEecCccceEecccc---ccccCcccccCHHHHcCCCCC
Confidence            3467899999999999   5669999999999999999999999999998875432   24578889999888765    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~  111 (154)
                                                             ..++..+.++.+++.+||+.||.+|+     ++.++++
T Consensus       180 ~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         180 KSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             chhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence                                                   23455678899999999999999996     8888875

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.81  E-value=1.2e-20  Score=139.45  Aligned_cols=105  Identities=20%  Similarity=0.207  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEec--CCCcEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLD--ENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~--~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ...|+.|++.||.|||   ..+++||||||.|||++  .++.+||+|||+++...... ......|+..+++||.+.+  
T Consensus       129 ~~~i~~qi~~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~-~~~~~~gt~~y~aPE~~~~~~  204 (352)
T d1koba_         129 VINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE-IVKVTTATAEFAAPEIVDREP  204 (352)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-CEEEECSSGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceecCCCC-ceeeccCcccccCHHHHcCCC
Confidence            4678999999999999   55699999999999997  56889999999998876532 2334456777777776644  


Q ss_pred             ---------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 ---------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                                   ......+.++.+|+.+||+.||.+|||+.|+++
T Consensus       205 ~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         205 VGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             BCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                                         111346788999999999999999999999975

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.5e-20  Score=138.68  Aligned_cols=103  Identities=19%  Similarity=0.212  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||||.|||++.++.+||+|||+++.....   .....|+..|++||.+.+    
T Consensus       143 ~~~i~~qi~~aL~yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~---~~~~~Gt~~Y~APE~~~~~~~~  216 (350)
T d1rdqe_         143 ARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGYN  216 (350)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHHh---CCEecCcCCHHHcccCCCCCEEeeeceeeeecccc---cccccCccccCCHHHHcCCCCC
Confidence            45789999999999994   55999999999999999999999999999877543   223568888888887755    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCC-----CHHHHHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRP-----QMGDVLC  111 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP-----~~~~v~~  111 (154)
                                                             ..+...+.++.+++..||+.||.+|+     ++.++++
T Consensus       217 ~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         217 KAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             ccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence                                                   23445678899999999999999994     8888875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=1.8e-20  Score=134.07  Aligned_cols=113  Identities=25%  Similarity=0.305  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCc---ceeeecccccccccCccccC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNML---TLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~   78 (154)
                      +...++.|++.||.|||   ..+++||||||.||+++.++..+++|||.+.......   .......|+..|++||.+.+
T Consensus       112 ~~~~i~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~  188 (277)
T d1o6ya_         112 RAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARG  188 (277)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHH---hCCccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcC
Confidence            35678999999999999   4569999999999999999999999999887654322   12334467888888887755


Q ss_pred             C-----------------------------------------------CCcchHHHHHHHHHHhhccCCCCCC-CHHHHH
Q 044888           79 K-----------------------------------------------IDPGCFKTFTDIAKKCLADRGCDRP-QMGDVL  110 (154)
Q Consensus        79 ~-----------------------------------------------~~~~~~~~~~~l~~~C~~~~p~~RP-~~~~v~  110 (154)
                      .                                               .....+.++.+++.+||+.||++|| ++.++.
T Consensus       189 ~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~  268 (277)
T d1o6ya_         189 DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR  268 (277)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred             CCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHH
Confidence            0                                               1134568899999999999999999 899999


Q ss_pred             HHHHHHH
Q 044888          111 CNLGLAW  117 (154)
Q Consensus       111 ~~L~~~~  117 (154)
                      ..|.++.
T Consensus       269 ~~l~r~~  275 (277)
T d1o6ya_         269 ADLVRVH  275 (277)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9888764

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.81  E-value=8.1e-21  Score=136.11  Aligned_cols=106  Identities=22%  Similarity=0.185  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      +...++.|++.||.|||   ..+++||||+|.||+++.++.+||+|||+++....... .....|+..+++||.+.+   
T Consensus       111 ~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~-~~~~~gt~~y~~PE~~~~~~~  186 (277)
T d1phka_         111 ETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK-LREVCGTPSYLAPEIIECSMN  186 (277)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC-BCCCCSCGGGCCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH---HcCCcccccccceEEEcCCCCeEEccchheeEccCCCc-eeeeeccCCCCCHHHhhcccc
Confidence            45678999999999999   45699999999999999999999999999987654321 122345555555544321   


Q ss_pred             --------------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 --------------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 --------------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                                        ......+.++.+++.+||+.||++||++.|
T Consensus       187 ~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~e  266 (277)
T d1phka_         187 DNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEE  266 (277)
T ss_dssp             TTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             ccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHH
Confidence                                                              112357789999999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      |++
T Consensus       267 il~  269 (277)
T d1phka_         267 ALA  269 (277)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            864

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-21  Score=139.43  Aligned_cols=72  Identities=32%  Similarity=0.441  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ...++.|++.||.|||++  .+|+||||||.|||++.++.+||+|||+++.....  ......|+..|++||.+.+
T Consensus       106 ~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~--~~~~~~GT~~Y~APEvl~~  177 (322)
T d1s9ja_         106 LGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQG  177 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--TC---CCSSCCCCHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCccccCCC--ccccccCCccccCchHHcC
Confidence            457899999999999952  35999999999999999999999999999865332  1223467777777776644

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.9e-20  Score=134.49  Aligned_cols=105  Identities=24%  Similarity=0.248  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK---   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---   79 (154)
                      ...++.|++.||+|||+   .+++||||||.|||++.++.+|++|||+++..... .......|+..|++||.+.+.   
T Consensus       118 ~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~-~~~~~~~gT~~Y~APE~~~~~~y~  193 (305)
T d1blxa_         118 IKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQSSYA  193 (305)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGG-GGGCCCCCCCTTCCHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCCCeeecchhhhhhhccc-ccCCCcccChhhcCcchhcCCCCC
Confidence            34689999999999994   55999999999999999999999999998765432 223345677778877766440   


Q ss_pred             ---------------------C----------------------------------------------CcchHHHHHHHH
Q 044888           80 ---------------------I----------------------------------------------DPGCFKTFTDIA   92 (154)
Q Consensus        80 ---------------------~----------------------------------------------~~~~~~~~~~l~   92 (154)
                                           +                                              ....+..+.+|+
T Consensus       194 ~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli  273 (305)
T d1blxa_         194 TPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLL  273 (305)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHH
T ss_pred             hhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHH
Confidence                                 0                                              112355678899


Q ss_pred             HHhhccCCCCCCCHHHHHH
Q 044888           93 KKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        93 ~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+||+.||++|||+.|+++
T Consensus       274 ~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         274 LKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             HHHSCSSTTTSCCHHHHHT
T ss_pred             HHHCcCChhHCcCHHHHhc
Confidence            9999999999999999874

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.80  E-value=1.3e-20  Score=135.24  Aligned_cols=52  Identities=25%  Similarity=0.407  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      +...++.|++.||+|||+   .+|+||||||.||+++.++.+|++|||.+.....
T Consensus       101 ~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~  152 (286)
T d1ob3a_         101 TAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGI  152 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC
T ss_pred             hhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEecccccceeccc
Confidence            346789999999999994   5599999999999999999999999999876543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-20  Score=137.63  Aligned_cols=105  Identities=24%  Similarity=0.204  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC----
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG----   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----   78 (154)
                      ...++.|++.||.|||+   .+++||||||.|||++.++.+|++|||+++.............|+..+++||.+.+    
T Consensus       105 ~~~~~~qi~~al~ylH~---~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  181 (320)
T d1xjda_         105 ATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYN  181 (320)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHHh---CCeeeccCcccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCC
Confidence            46789999999999995   55999999999999999999999999999876554444445678888888887755    


Q ss_pred             ---------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCCHH-HHH
Q 044888           79 ---------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQMG-DVL  110 (154)
Q Consensus        79 ---------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~~~-~v~  110 (154)
                                                             ..+...+.++.+|+.+||+.||.+||++. ++.
T Consensus       182 ~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         182 HSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             chhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHH
Confidence                                                   23445678899999999999999999995 675

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.1e-20  Score=135.63  Aligned_cols=105  Identities=21%  Similarity=0.228  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC---CCcEEEecCCCcccCCCCcceeeecccccccccCccccC-
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE---NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG-   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~---~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   78 (154)
                      ...|+.|++.||.|||   ..+++||||||.||+++.   .+.+|++|||+++...... ......|+..+++||.+.+ 
T Consensus       113 ~~~i~~qi~~al~ylH---~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~  188 (335)
T d2ozaa1         113 ASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN-SLTTPCYTPYYVAPEVLGPE  188 (335)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCC-CCCCCSCCCSSCCCCCCCGG
T ss_pred             HHHHHHHHHHHHHHHH---HcCCccccccccccccccccccccccccccceeeeccCCC-ccccccCCcccCCcHHHcCC
Confidence            4678999999999999   556999999999999975   4579999999998765432 2234567888888887654 


Q ss_pred             ----------------------------------------------CCC----cchHHHHHHHHHHhhccCCCCCCCHHH
Q 044888           79 ----------------------------------------------KID----PGCFKTFTDIAKKCLADRGCDRPQMGD  108 (154)
Q Consensus        79 ----------------------------------------------~~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~  108 (154)
                                                                    ..+    ...+.++.+++.+||+.||++|||+.|
T Consensus       189 ~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e  268 (335)
T d2ozaa1         189 KYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITE  268 (335)
T ss_dssp             GGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             CCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHH
Confidence                                                          011    134668999999999999999999999


Q ss_pred             HHH
Q 044888          109 VLC  111 (154)
Q Consensus       109 v~~  111 (154)
                      ++.
T Consensus       269 il~  271 (335)
T d2ozaa1         269 FMN  271 (335)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            976

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.80  E-value=1.1e-19  Score=131.00  Aligned_cols=117  Identities=15%  Similarity=0.060  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC-----CCcEEEecCCCcccCCCCcc-------eeeecccccc
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE-----NWVAKVSDLGLAKVGPNMLT-------LCCYQSGTLG   69 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~-----~~~~kl~dfg~~~~~~~~~~-------~~~~~~g~~~   69 (154)
                      +...++.|++.||.|||   +.+++||||||.||+++.     ++.+|++|||+++......+       ......|+..
T Consensus       102 ~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~  178 (293)
T d1csna_         102 TVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTAR  178 (293)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchh
Confidence            46789999999999999   566999999999999964     46799999999987654221       2233468899


Q ss_pred             cccCccccCC------------------------C---------------------------CcchHHHHHHHHHHhhcc
Q 044888           70 LVVDPFLRGK------------------------I---------------------------DPGCFKTFTDIAKKCLAD   98 (154)
Q Consensus        70 ~~~~~~~~~~------------------------~---------------------------~~~~~~~~~~l~~~C~~~   98 (154)
                      |++||.+.+.                        +                           ...++.++.+++..||..
T Consensus       179 y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~  258 (293)
T d1csna_         179 YMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNL  258 (293)
T ss_dssp             TCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHC
T ss_pred             hcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcC
Confidence            9998877551                        0                           123567899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcC
Q 044888           99 RGCDRPQMGDVLCNLGLAWRQQG  121 (154)
Q Consensus        99 ~p~~RP~~~~v~~~L~~~~~~~~  121 (154)
                      +|++||++..+.+.|+.+.+...
T Consensus       259 ~~~~rP~y~~l~~~l~~~~~~~~  281 (293)
T d1csna_         259 AFDATPDYDYLQGLFSKVLERLN  281 (293)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             CcccCcCHHHHHHHHHHHHHHcC
Confidence            99999999999999998876443

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-20  Score=136.07  Aligned_cols=107  Identities=20%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            2 WRLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         2 ~rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ....++.|++.||.|||+   .+++||||||.||+++.++.+|++|||+++.............|+..+++||.+..   
T Consensus       103 ~~~~~~~qil~~L~yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~  179 (298)
T d1gz8a_         103 LIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKY  179 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHhhc---CCEEccccCchheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccccC
Confidence            356789999999999994   55999999999999999999999999999776543322223344555544443211   


Q ss_pred             --------------------CC--------------------------------------------------CcchHHHH
Q 044888           79 --------------------KI--------------------------------------------------DPGCFKTF   88 (154)
Q Consensus        79 --------------------~~--------------------------------------------------~~~~~~~~   88 (154)
                                          ..                                                  .+..+.++
T Consensus       180 ~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  259 (298)
T d1gz8a_         180 YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDG  259 (298)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHH
T ss_pred             CCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHH
Confidence                                00                                                  01234678


Q ss_pred             HHHHHHhhccCCCCCCCHHHHHH
Q 044888           89 TDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        89 ~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+++.+||+.||++|||+.|+++
T Consensus       260 ~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         260 RSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHccCChhHCcCHHHHhC
Confidence            89999999999999999999975

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.3e-20  Score=133.76  Aligned_cols=105  Identities=22%  Similarity=0.146  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC----cEEEecCCCcccCCCCcceeeecccccccccCccccC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW----VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++    .+|++|||++....... ......|+..|++||.+.+
T Consensus       115 ~~~~~~qi~~al~yLH---~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~-~~~~~~~t~~y~APE~~~~  190 (293)
T d1jksa_         115 ATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGN-EFKNIFGTPEFVAPEIVNY  190 (293)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSC-BCSCCCCCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHhhh---hcceeecccccceEEEecCCCcccceEecchhhhhhcCCCc-cccccCCCCcccCHHHHcC
Confidence            4678999999999999   45599999999999998765    49999999998765422 2233467777888877654


Q ss_pred             C-------------------------------------------C----CcchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 K-------------------------------------------I----DPGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 ~-------------------------------------------~----~~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .                                           .    +...+.++.+++.+||+.||++|||+.|+++
T Consensus       191 ~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         191 EPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0                                           0    1235667889999999999999999999874

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.9e-19  Score=132.61  Aligned_cols=105  Identities=21%  Similarity=0.124  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC-cEEEecCCCcccCCCCcceeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW-VAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||+|||   +.+|+||||||.|||++.++ .+||+|||+++...... ......|+..+++||.+.+   
T Consensus       124 ~~~i~~qil~aL~yLH---~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~  199 (350)
T d1q5ka_         124 VKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE-PNVSYICSRYYRAPELIFGATD  199 (350)
T ss_dssp             HHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTS-CCCSCCSCTTSCCHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHH---hcCCcccCCCcceEEEecCCCceeEecccchhhccCCc-ccccccccccccChHHhhcccC
Confidence            4568999999999999   56699999999999999775 89999999997764321 1112234444554443321   


Q ss_pred             ----------------------------------------------------------------------CCCcchHHHH
Q 044888           79 ----------------------------------------------------------------------KIDPGCFKTF   88 (154)
Q Consensus        79 ----------------------------------------------------------------------~~~~~~~~~~   88 (154)
                                                                                            ......+.++
T Consensus       200 ~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  279 (350)
T d1q5ka_         200 YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEA  279 (350)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHH
T ss_pred             CCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHH
Confidence                                                                                  0012245678


Q ss_pred             HHHHHHhhccCCCCCCCHHHHHH
Q 044888           89 TDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        89 ~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                      .+|+.+||+.||++|||+.|+++
T Consensus       280 ~dLl~~mL~~dP~~R~ta~e~L~  302 (350)
T d1q5ka_         280 IALCSRLLEYTPTARLTPLEACA  302 (350)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHccCChhHCcCHHHHhc
Confidence            89999999999999999999985

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.8e-19  Score=130.19  Aligned_cols=104  Identities=22%  Similarity=0.239  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCccccCC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRGK---   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---   79 (154)
                      ...++.|++.||.|||   +.+++||||||.||+++.++.+|++|||+++......+   ...|+..+++||.+.+.   
T Consensus       123 ~~~~~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~---~~~~t~~y~aPE~~~~~~~~  196 (346)
T d1cm8a_         123 IQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMT---GYVVTRWYRAPEVILNWMRY  196 (346)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCC---SSCSCGGGCCTHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHH---hCCCcccccCcchhhcccccccccccccceeccCCccc---cccccccccCHHHHcCCCCC
Confidence            4678999999999999   55699999999999999999999999999987755332   34466667777655320   


Q ss_pred             ----------------------C--------------------------------------------------CcchHHH
Q 044888           80 ----------------------I--------------------------------------------------DPGCFKT   87 (154)
Q Consensus        80 ----------------------~--------------------------------------------------~~~~~~~   87 (154)
                                            +                                                  ....+.+
T Consensus       197 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  276 (346)
T d1cm8a_         197 TQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPL  276 (346)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHH
T ss_pred             CccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHH
Confidence                                  0                                                  0123456


Q ss_pred             HHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           88 FTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        88 ~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      +.+|+.+||+.||.+|||+.|+++.
T Consensus       277 ~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         277 AVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHCcCChhHCcCHHHHhcC
Confidence            7889999999999999999999863

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.6e-19  Score=129.18  Aligned_cols=107  Identities=22%  Similarity=0.281  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc---eeeecccccccccCccccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT---LCCYQSGTLGLVVDPFLRGK   79 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~   79 (154)
                      ...++.|++.||.|||   ..+++||||||.|||++.++.+||+|||++........   ......|+..+++||.+...
T Consensus       111 i~~i~~qil~al~yLH---~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~  187 (345)
T d1pmea_         111 ICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNS  187 (345)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTB
T ss_pred             HHHHHHHHHHHHHHHH---HCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcC
Confidence            4578999999999999   55699999999999999999999999999976544211   11234466777777765320


Q ss_pred             -------------------------CC--------------------------------------------------cch
Q 044888           80 -------------------------ID--------------------------------------------------PGC   84 (154)
Q Consensus        80 -------------------------~~--------------------------------------------------~~~   84 (154)
                                               +.                                                  +..
T Consensus       188 ~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (345)
T d1pmea_         188 KGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNA  267 (345)
T ss_dssp             CSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTS
T ss_pred             CCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCC
Confidence                                     00                                                  012


Q ss_pred             HHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 044888           85 FKTFTDIAKKCLADRGCDRPQMGDVLCN  112 (154)
Q Consensus        85 ~~~~~~l~~~C~~~~p~~RP~~~~v~~~  112 (154)
                      +.++.+++.+||+.||.+|||+.|+++.
T Consensus       268 s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         268 DSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            3468899999999999999999999853

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.3e-19  Score=127.35  Aligned_cols=51  Identities=25%  Similarity=0.420  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...++.|++.||+|||+   .+|+||||||.||+++.++.+|++|||.++....
T Consensus       103 ~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~  153 (292)
T d1unla_         103 VKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGI  153 (292)
T ss_dssp             HHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             HHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecchhhcccC
Confidence            45789999999999994   5699999999999999999999999999987654

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.1e-19  Score=129.57  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecC--CCcEEEecCCCcccCCCCcceeeecccccccccCccccC--
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDE--NWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLRG--   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~--~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--   78 (154)
                      ...|+.|++.||.|||   ..+++||||||.||+++.  ...+|++|||+++...... ......++..+++|+.+.+  
T Consensus       104 ~~~i~~qi~~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~-~~~~~~~t~~y~ape~~~~~~  179 (321)
T d1tkia_         104 IVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD-NFRLLFTAPEYYAPEVHQHDV  179 (321)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-EEEEEESCGGGSCHHHHTTCE
T ss_pred             HHHHHHHHHHHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhccccCC-cccccccccccccchhccCCC
Confidence            4578999999999999   556999999999999974  4579999999998765421 2223345566666555433  


Q ss_pred             -----------------------------------------CCC----cchHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044888           79 -----------------------------------------KID----PGCFKTFTDIAKKCLADRGCDRPQMGDVLC  111 (154)
Q Consensus        79 -----------------------------------------~~~----~~~~~~~~~l~~~C~~~~p~~RP~~~~v~~  111 (154)
                                                               ..+    +..+.++.+++.+||+.||++|||+.|+++
T Consensus       180 ~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         180 VSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             ECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                                     111    134667899999999999999999999986

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.4e-18  Score=124.20  Aligned_cols=72  Identities=29%  Similarity=0.346  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcc----eeeecccccccccCcccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLT----LCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~g~~~~~~~~~~~   77 (154)
                      ...++.|++.||.|||   +.+++||||||+||+++.++.+|++|||+++.......    ......|+..|++||.+.
T Consensus       119 ~~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~  194 (318)
T d3blha1         119 IKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLL  194 (318)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHc
Confidence            3568899999999999   55699999999999999999999999999976653211    222335677777777653

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.74  E-value=1e-18  Score=127.50  Aligned_cols=51  Identities=27%  Similarity=0.343  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCC-CcEEEecCCCcccCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDEN-WVAKVSDLGLAKVGPN   56 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~-~~~kl~dfg~~~~~~~   56 (154)
                      ...++.|++.||.|||   +.+|+||||||.|||++.+ ..+|++|||++.....
T Consensus       131 i~~i~~qil~aL~~LH---~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~  182 (328)
T d3bqca1         131 IRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  182 (328)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCT
T ss_pred             HHHHHHHHHHHHHHHh---hcccccccccccceEEcCCCCeeeecccccceeccC
Confidence            3568999999999999   4559999999999999865 4689999999977654

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-18  Score=125.34  Aligned_cols=106  Identities=23%  Similarity=0.170  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCC-cceeeecccccccccCccccC---
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNM-LTLCCYQSGTLGLVVDPFLRG---   78 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~---   78 (154)
                      ...++.|++.||.|+|   +.+++||||||.||+++.++.+||+|||+++..... ........|+..++++|.+.+   
T Consensus       131 ~~~~~~Qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~  207 (322)
T d1vzoa_         131 VQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDS  207 (322)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHhh---cCCEEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCc
Confidence            3467899999999999   455999999999999999999999999999776432 112222334444444443321   


Q ss_pred             ----------------------------------------------CCCcchHHHHHHHHHHhhccCCCCCCC-----HH
Q 044888           79 ----------------------------------------------KIDPGCFKTFTDIAKKCLADRGCDRPQ-----MG  107 (154)
Q Consensus        79 ----------------------------------------------~~~~~~~~~~~~l~~~C~~~~p~~RP~-----~~  107 (154)
                                                                    ..+...+.++.+++.+||+.||.+||+     +.
T Consensus       208 ~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~  287 (322)
T d1vzoa_         208 GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDAD  287 (322)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHH
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHH
Confidence                                                          234567889999999999999999995     67


Q ss_pred             HHHH
Q 044888          108 DVLC  111 (154)
Q Consensus       108 ~v~~  111 (154)
                      |+++
T Consensus       288 eil~  291 (322)
T d1vzoa_         288 EIKE  291 (322)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            7753

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.2e-18  Score=123.17  Aligned_cols=51  Identities=33%  Similarity=0.526  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++.+|++|||++.....
T Consensus       123 ~~~i~~qil~aL~~LH---~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1         123 VQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             HHHHHHHHHHHHHHHH---hCCCcccccCCccccccccccccccccchhcccCc
Confidence            4568999999999999   55699999999999999999999999999876543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-17  Score=122.15  Aligned_cols=71  Identities=23%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCCCCcceeeecccccccccCcccc
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPNMLTLCCYQSGTLGLVVDPFLR   77 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~g~~~~~~~~~~~   77 (154)
                      ...++.|++.||.|||   ..+++||||||.||+++.++..|++|||+++....... .....++..+++||.+.
T Consensus       121 i~~~~~qil~gl~~LH---~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~-~~~~~~t~~y~aPE~l~  191 (355)
T d2b1pa1         121 MSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM-MTPYVVTRYYRAPEVIL  191 (355)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC----------------CCTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHhh---hcccccccCCccccccccccceeeechhhhhccccccc-cccccccccccChhhhc
Confidence            3568999999999999   55699999999999999999999999998876544211 11223444555555443

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=8.9e-17  Score=118.25  Aligned_cols=50  Identities=34%  Similarity=0.383  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCC------cEEEecCCCcccCC
Q 044888            4 LKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENW------VAKVSDLGLAKVGP   55 (154)
Q Consensus         4 l~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~------~~kl~dfg~~~~~~   55 (154)
                      ..++.|++.||.|||+  ..+|+||||||.||+++.++      .++++|||.+....
T Consensus       128 ~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~  183 (362)
T d1q8ya_         128 KQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD  183 (362)
T ss_dssp             HHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT
T ss_pred             HHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCcccccceeeEeecccccccc
Confidence            4678999999999996  35699999999999997654      38999999987654

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.10  E-value=4.3e-11  Score=80.26  Aligned_cols=49  Identities=14%  Similarity=0.058  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEeecCCCCcEEecCCCcEEEecCCCcccCC
Q 044888            3 RLKICIGAARGLHYLRTGTRNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGP   55 (154)
Q Consensus         3 rl~i~~~ia~gl~~LH~~~~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~   55 (154)
                      ..+++.|++.++.|||   ..+++|+||||.||+++.+ .++++|||.+....
T Consensus       105 ~~~i~~ql~~~l~~lH---~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~  153 (191)
T d1zara2         105 PDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVG  153 (191)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETT-EEEECCCTTCEETT
T ss_pred             HHHHHHHHHHHHHHHh---hCCEEEccCChhheeeeCC-CEEEEECCCcccCC
Confidence            3578999999999999   4569999999999999865 58899999986554

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.59  E-value=0.019  Score=39.75  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      +.+++|+|+.+.|++++.+....+.||+.+..
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ccccccCCcchhhhhcccccceeEeccccccc
Confidence            56799999999999999887778999998754

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.67  E-value=0.068  Score=35.51  Aligned_cols=30  Identities=27%  Similarity=0.437  Sum_probs=25.8

Q ss_pred             CcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888           24 IIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus        24 ~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      .++|+|+.+.|++++.+....+.||+.+..
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhccc
Confidence            489999999999999877778999988754

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=89.57  E-value=0.07  Score=35.27  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=26.2

Q ss_pred             CCcEeecCCCCcEEecCCCcEEEecCCCccc
Q 044888           23 NIIIHRDVKSTNILLDENWVAKVSDLGLAKV   53 (154)
Q Consensus        23 ~~i~h~dl~~~nill~~~~~~kl~dfg~~~~   53 (154)
                      ..++|+|+.+.|++++.+..+.+.||+.+..
T Consensus       175 ~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         175 LVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             EEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ceEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            3489999999999999876678999988754

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=82.19  E-value=0.33  Score=34.52  Aligned_cols=34  Identities=32%  Similarity=0.433  Sum_probs=27.4

Q ss_pred             CCCcEeecCCCCcEEecCCCcEEEecCCCcccCCC
Q 044888           22 RNIIIHRDVKSTNILLDENWVAKVSDLGLAKVGPN   56 (154)
Q Consensus        22 ~~~i~h~dl~~~nill~~~~~~kl~dfg~~~~~~~   56 (154)
                      ...++|+|+.+.||+++.+. +++.||-.+.....
T Consensus       222 ~~~LiHGDl~~gNIlv~~~~-~~vID~E~a~~G~~  255 (392)
T d2pula1         222 AETLIHGDLHTGSIFASEHE-TKVIDPEFAFYGPI  255 (392)
T ss_dssp             CCEEECSCCCGGGEEECSSC-EEECCCTTCEEECT
T ss_pred             CcceeccCCcCCceeEcCCc-eEEechhhcccCCH
Confidence            45699999999999998764 79999987765443