BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044890
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/550 (40%), Positives = 345/550 (62%), Gaps = 23/550 (4%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
RRSA+Y + W+ + + S T + E+Y ++ +L+ + + + K LL+L D+V
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNV 74
Query: 80 QKLGVAYHFEEEIKEAMNILKGDA-----TIKDLNATSLHFRLLREHGHPVS----TGTK 130
Q+LG+ Y FE +I+ A++ T L+AT+L FRLLR+HG VS +G K
Sbjct: 75 QRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFK 134
Query: 131 -RDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKE-SLGTLGSKIILA 188
++G F +NL+ED + +L+L+EASFL +EGE++L+EA +F HLKE S +G + LA
Sbjct: 135 DQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKE--LA 192
Query: 189 EQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELA 248
EQV +L++P + R R+EA I+ Y +++ +LL LA LDYN++QS++Q++L+E +
Sbjct: 193 EQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETS 252
Query: 249 RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYG 308
RWW +G KL FARDRL+E++ +G+ F+ Q+S CR + K +T IDDIYDVYG
Sbjct: 253 RWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYG 312
Query: 309 SIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKK 368
++DELELFT+AV+RW++ A+ +LP+YM++C+LA++N NE+AYD +K G N L Y+ K
Sbjct: 313 TLDELELFTDAVERWDVNAI-NDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTK 371
Query: 369 EWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENS 428
W +LC ++L EA+W TPT +Y NAW S P ++ AY + + EN
Sbjct: 372 AWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENL 431
Query: 429 LSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDR 488
Y ++I S I RL NDL +++ E+ RG+ A S+ CYM +GISEE A +
Sbjct: 432 -------QKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATES 484
Query: 489 IKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVS 547
+ +LI +WKK+N + L S F + + ++++R +HC +H GD + ++R R++S
Sbjct: 485 VMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLS 544
Query: 548 LILEPI-PVE 556
+I EPI P E
Sbjct: 545 VITEPILPFE 554
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/550 (39%), Positives = 325/550 (59%), Gaps = 25/550 (4%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
RRS NY+ S W+ I+S + Y + + R EL K + +L +L D +
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQL-ELIDDL 60
Query: 80 QKLGVAYHFEEEIKEAMNILKGDATI---------KDLNATSLHFRLLREHGHPVS---- 126
Q++G++ HF+ E KE ++ + D +DL +TSL FRLLREHG V+
Sbjct: 61 QRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVF 120
Query: 127 -TGTKRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKI 185
+ +G F ++L +D GLL L+EASFL EGE LE A F T+ L+E + G
Sbjct: 121 DSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDG 180
Query: 186 ILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELK 245
L ++ SLDIP +WRI R A +I+ Y + P++L LA LD N+VQ+ Q+ELK
Sbjct: 181 DLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELK 240
Query: 246 ELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYD 305
E RWW N GF EKL FARDRL+E Y G+ Q + RI + K ++T IDDIYD
Sbjct: 241 ESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYD 300
Query: 306 VYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSY 365
VYG+++ELE FT+ ++RW+I ++ ++LP+YMQ+C+LA+ NF ++ +YDVMK G+N + Y
Sbjct: 301 VYGTLEELEQFTDLIRRWDINSI-DQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPY 359
Query: 366 IKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLT 425
+++ W +L Y+VEARWF G+ P+ +EY+EN+W S+ P + H + + ++ T
Sbjct: 360 LRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRV----TDSFT 415
Query: 426 ENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEA 485
+ ++ L + Y +++ WSS + RL++DLG S E+ RGDV KS+QCYM + SE EA
Sbjct: 416 KETVDSL---YKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEA 472
Query: 486 RDRIKSLIIYSWKKLNGKNLYK-SDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRD 543
R +K LI WKK+N + + K S F + +D+ R A ++H GDG GT +
Sbjct: 473 RKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQ 532
Query: 544 RLVSLILEPI 553
++ + EP
Sbjct: 533 QMTRTLFEPF 542
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/550 (38%), Positives = 314/550 (57%), Gaps = 25/550 (4%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
RRS NY ++W+ I+S TPYT E + +R EL + + L E +L +L +
Sbjct: 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQL-ELIHDL 64
Query: 80 QKLGVAYHFEEEIKEAMNIL--------KGDATIKDLNATSLHFRLLREHGHPVSTGT-- 129
+ LG++ F++EIKE + ++ + DL T+L FRLLR+HG +S
Sbjct: 65 KYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFN 124
Query: 130 ----KRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKI 185
++ F +L +D +G+L L+EASFL +GED LE A F T+ L++ L G++I
Sbjct: 125 CFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEI 184
Query: 186 I--LAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQE 243
L ++ SLD+P +WRI +EA+ FI Y + P++ LAKL++N++Q+ HQQE
Sbjct: 185 DENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQE 244
Query: 244 LKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDI 303
LK+L+RWWS L F EKL F RDRL+E++ +G+ Q R + + T IDDI
Sbjct: 245 LKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDI 304
Query: 304 YDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTL 363
YDVYG++DELELFT+ KRW+ ++ LP YMQ+CY + N+ ++ AYD++K HG L
Sbjct: 305 YDVYGTLDELELFTDTFKRWDTESI-TRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCL 363
Query: 364 SYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSND 423
Y++K +L +Y EA+W+ GYTP+ EY+ A +SV SPA I Y +
Sbjct: 364 QYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDT 423
Query: 424 LTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEE 483
+SL + Y +++ + +I RL +DLG S EL RGDV K+IQCYM E SEE
Sbjct: 424 AVIDSL------YQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEE 477
Query: 484 EARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIF-HGDGIGTSTGVSR 542
EA + +K LI +WK +N FP+ M ++ R A I+ HGDG G +
Sbjct: 478 EAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTY 537
Query: 543 DRLVSLILEP 552
+ + L+ EP
Sbjct: 538 EHIAGLLFEP 547
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/541 (36%), Positives = 324/541 (59%), Gaps = 22/541 (4%)
Query: 21 RSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQ 80
R+ Y ++W+ I+SF + Y E + R + + K + +S L +L D ++
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRL-ELIDDLR 94
Query: 81 KLGVAYHFEEEIKEAMN---ILKGDATIKDLNATSLHFRLLREHGHPVST------GTKR 131
+LG++ HFE EI E +N + +DL +T+L FRLLR++ VS +
Sbjct: 95 RLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAK 154
Query: 132 DGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQV 191
F +L +D GLL L+EASFL +GE+ L A F T+ L++ + + I L +
Sbjct: 155 GTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRV-LVDKDINLLSSI 213
Query: 192 QQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWW 251
+++L++P++WR+ A++FI Y + P +L LAKLD+N+VQ+ QQELKE +RWW
Sbjct: 214 ERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWW 273
Query: 252 SNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSID 311
++ G +L F RDR++E Y G+ + Q RI LTK ++T IDD++D+YG+++
Sbjct: 274 NSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLE 333
Query: 312 ELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWE 371
EL+LFT A++RW+I + +++LP YMQICYLA+FNF NE+AYD ++ G ++ Y++K W
Sbjct: 334 ELQLFTTAIQRWDIES-MKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWV 392
Query: 372 NLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSC 431
L SYL+EA+W+ KG+ P+ +EY++N+W+S+G + H + L ++ + E +
Sbjct: 393 GLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRL----TDSIEEEAAES 448
Query: 432 LKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKS 491
+ H Y +++ S I RL++D+G S E++RGDV KS+QCYM E+ SEEEAR+ ++S
Sbjct: 449 M---HKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRS 505
Query: 492 LIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH--GDGIGTSTGVSRDRLVSLI 549
LI +WK +N K + S F + ++ +++R A I+ DG G + L L+
Sbjct: 506 LIDQTWKMMN-KEMMTSSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLL 564
Query: 550 L 550
Sbjct: 565 F 565
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 298 bits (763), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 176/550 (32%), Positives = 299/550 (54%), Gaps = 21/550 (3%)
Query: 13 GSNDPLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSEL 72
SN R A++ SIW + E R +LK++ + + + ++++
Sbjct: 15 SSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAET-EKRHQQLKEEVRKMIVAPMANSTQK 73
Query: 73 LKLTDSVQKLGVAYHFEEEIKEAM-NILKGDATIK-DLNATSLHFRLLREHGHPVSTGT- 129
L DSVQ+LGV+YHF +EI++ + NI + + DL TS+ FRLLREHG+ VS
Sbjct: 74 LAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVF 133
Query: 130 ----KRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKI 185
G F ++ D+ GLL L++AS+L + GED+L+EA F T HL ++ +L
Sbjct: 134 NKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHP- 192
Query: 186 ILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELK 245
L+E+V +L +PR+EA++++ +Y + LL AK+D+N++Q +H++EL
Sbjct: 193 -LSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELS 251
Query: 246 ELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYD 305
E+ RWW +L F+ KL +ARDR++E Y + G+ F+ Q+S R LTK + + + +DD YD
Sbjct: 252 EICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYD 311
Query: 306 VYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLN-TLS 364
Y + +EL +T A++RW+I + +E+PEYM+ Y A+ + E+ V + HG +
Sbjct: 312 SYATYEELIPYTNAIERWDIKCI-DEIPEYMKPSYKALLDVYEEMVQLVAE-HGRQYRVE 369
Query: 365 YIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDL 424
Y K L SYLVEA+W + Y P+ +E+ NA + G + +++ G D+
Sbjct: 370 YAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFV-----GMGDI 424
Query: 425 TENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEE 484
+ K ++I S++I R +D+ + +R D +I+CYM E G++ +E
Sbjct: 425 V--TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE 482
Query: 485 ARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRD 543
A D + +WK LN + L ++ P + L+++R ++ GDG ++
Sbjct: 483 AYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKG 542
Query: 544 RLVSLILEPI 553
+ SL++EPI
Sbjct: 543 GITSLLIEPI 552
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 294 bits (752), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 179/525 (34%), Positives = 293/525 (55%), Gaps = 47/525 (8%)
Query: 71 ELLKLTDSVQKLGVAYHFEEEIKEAMNIL------KGDA-----TIKDLNATSLHFRLLR 119
E L + D++ +LG+ HFE+EIKEA++ + +G I DL T+L FRLLR
Sbjct: 300 ERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLR 359
Query: 120 EHGHPVSTGT-----KRDGRF---HDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCT 171
H + VS +G+F +D+ +LNL+ AS L GE++L+EA F T
Sbjct: 360 LHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFAT 419
Query: 172 EHLKESL------GTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDE----- 220
++L+E+L +K L+++++ +L + +PR+EA+ + ++Y D
Sbjct: 420 KYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKC 479
Query: 221 -------SGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLL 273
+ L L KLD+N++QSIHQ+E+K + W+ + G +FAR+R +E Y L
Sbjct: 480 VYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLP-LFTFARERPLEFYFL 538
Query: 274 VMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELP 333
V ++ Q++KCR TK C+ T +DD+YD YG++DEL+LFTEAV+RW++ + E LP
Sbjct: 539 VAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDL-SFTENLP 597
Query: 334 EYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAK 393
+YM++CY ++ +E+A++ K G +S+ +K WE+ Y EA W + Y PT
Sbjct: 598 DYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLD 657
Query: 394 EYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEH-GYDEMIYWSSLISRLS 452
EYI+N S+G ++ +++ Q L++ +L KV++ G + +SLISRL+
Sbjct: 658 EYIKNGITSIGQRILLLSGVLIMDGQL---LSQEALE--KVDYPGRRVLTELNSLISRLA 712
Query: 453 NDLGNSAVELKRGDVAKSIQCYMIEEG-ISEEEARDRIKSLIIYSWKKLNGKNLYKSDFP 511
+D E RG++A SI+CYM + +EEEA D I S++ + K+L + L D P
Sbjct: 713 DDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVP 772
Query: 512 ESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEPIPV 555
+ KM + +R IF GDG G S +D + ++EP+P+
Sbjct: 773 FACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 2 ACSNNSIVACN-GSNDPLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKD 60
A S S + C+ S L RR+AN H ++W +L+ S +PY Y R + L + K
Sbjct: 6 AVSKVSSLVCDLSSTSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKA 65
Query: 61 LFASA 65
+ A
Sbjct: 66 MLNPA 70
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/545 (30%), Positives = 297/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ +++ + ++ L L D++
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 61
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI + ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 62 ERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 121
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 122 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 179
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 180 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 239
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 240 DLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 299
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 300 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 358
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 359 VVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL-----GMKSATEQDFEWL 413
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 414 SKN---PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 470
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 471 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 530
Query: 551 EPIPV 555
+ I +
Sbjct: 531 DSIKI 535
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/545 (30%), Positives = 297/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ +++ + ++ L L D++
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI + ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 77 ERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 136
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 137 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 194
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 195 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 254
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 255 DLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 314
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 315 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 373
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 374 VVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL-----GMKSATEQDFEWL 428
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 429 SKN---PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 485
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 486 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 545
Query: 551 EPIPV 555
+ I +
Sbjct: 546 DSIKI 550
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/545 (30%), Positives = 297/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ +++ + ++ L L D++
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI + ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 77 ERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 136
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 137 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 194
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 195 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 254
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 255 DLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 314
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 315 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 373
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 374 IVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYL-----GMKSATEQDFEWL 428
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 429 SKN---PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 485
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 486 AETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLV 545
Query: 551 EPIPV 555
+ I +
Sbjct: 546 DSIKI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/545 (30%), Positives = 297/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ +++ + ++ L L D++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI + ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 134
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 135 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 192
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 193 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 252
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 253 DLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 312
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 313 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 371
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 372 VVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL-----GMKSATEQDFEWL 426
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 427 SKN---PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 483
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 543
Query: 551 EPIPV 555
+ I +
Sbjct: 544 DSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 165/545 (30%), Positives = 295/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ + + + ++ L L D +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI E ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 75 ERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 134
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 135 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 192
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 193 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 252
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 253 DLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 312
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 313 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 371
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 372 VVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL-----GMKSATEQDFEWL 426
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 427 SKN---PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 483
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 543
Query: 551 EPIPV 555
+ I +
Sbjct: 544 DSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 286 bits (733), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/545 (30%), Positives = 295/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ + + + ++ L L D +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI E ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 75 ERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 134
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 135 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 192
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 193 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 252
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 253 DLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 312
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 313 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 371
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 372 VVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL-----GMKSATEQDFEWL 426
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 427 SKN---PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 483
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 551 EPIPV 555
+ I +
Sbjct: 544 DSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/545 (30%), Positives = 297/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ +++ + ++ L L D++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI + ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 134
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 135 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 192
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 193 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 252
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 253 DLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 312
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 313 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 371
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 372 VVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL-----GMKSATEQDFEWL 426
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 427 SKN---PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 483
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 551 EPIPV 555
+ I +
Sbjct: 544 DSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/545 (30%), Positives = 297/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ +++ + ++ L L D++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI + ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 134
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 135 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 192
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 193 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 252
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 253 DLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 312
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 313 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 371
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 372 VVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL-----GMKSATEQDFEWL 426
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 427 SKN---PKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 483
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 551 EPIPV 555
+ I +
Sbjct: 544 DSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/545 (30%), Positives = 297/545 (54%), Gaps = 20/545 (3%)
Query: 20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
R A++ S+W + + E YA ++ LK++ +++ + ++ L L D++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 80 QKLGVAYHFEEEIKEAMN-ILKGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDG 133
++LG++YHFE+EI + ++ I ++ DL ++L FRLLR+HG +S +G
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG 134
Query: 134 RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQ 193
+F ++L D+ GLLNL+EAS + +D+LE+A F T HL+ + L S L EQV
Sbjct: 135 KFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTH 192
Query: 194 SLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWS 252
+L+ + +PR+E + FI +Y + +LL AKLD+NL+Q +H+QEL +++RWW
Sbjct: 193 ALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWK 252
Query: 253 NLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDE 312
+L F L +ARDR++E Y +G+ F+ Q+S+ R+ L K + +++ +DD +D YG++ E
Sbjct: 253 DLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKE 312
Query: 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWEN 372
LE +T+A++RW+I + + LP+YM+I Y A+ + + ++ + + + + +
Sbjct: 313 LEAYTDAIQRWDINEI-DRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 371
Query: 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCL 432
+ +Y VE+ WF +GYTP EY+ NA + +Y+ G TE L
Sbjct: 372 VVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL-----GMKSATEQDFEWL 426
Query: 433 KVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSL 492
+++ S +I R+ +D VE RG +A I+C M + GIS +EA + +++
Sbjct: 427 SKN---PKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 483
Query: 493 IIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHC--IFHGDGIGTSTGVSRDRLVSLIL 550
+WK +N L + L+++R I + DG V + +++L++
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 551 EPIPV 555
+ I +
Sbjct: 544 DSIKI 548
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 251 bits (641), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 163/523 (31%), Positives = 282/523 (53%), Gaps = 50/523 (9%)
Query: 71 ELLKLTDSVQKLGVAYHFEEEIKEAMNIL------KG-----DATIKDLNATSLHFRLLR 119
E L D+V++LG+ HF+EEIKEA++ + +G + + D++ T++ R+LR
Sbjct: 272 ERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILR 331
Query: 120 EHGHPVSTGTKRDGR--------FHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCT 171
HG+ VS+ + R F + + +LN+ S + GE ++EEA +
Sbjct: 332 LHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTE 391
Query: 172 EHLKESLGTLGS------KIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDE----- 220
+L+ +L + + K + +V+ +L P + +PR+EA+++I+ Y DD
Sbjct: 392 RYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKT 451
Query: 221 -------SGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLL 273
S L LAKLD+N VQSIHQ EL++L RWW + GF + L+F R+R+ E Y
Sbjct: 452 VYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTD-LNFTRERVTEIYFS 510
Query: 274 VMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELP 333
F+ +FSKCR TK +DD+YD +GS+D+L+LFTE+VKRW++ ++++++P
Sbjct: 511 PASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDL-SLVDQMP 569
Query: 334 EYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAK 393
+ M+IC++ +N N++A + + G + L YI+ W+ +Y EA W Y P+
Sbjct: 570 QQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFN 629
Query: 394 EYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSN 453
EYIENA VS+ A+ ++ L LT+ LS + E + +++ L RL N
Sbjct: 630 EYIENASVSI----ALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLM---GLTGRLVN 682
Query: 454 DLGNSAVELKRGDVAKSIQCYMIEE-GISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPE 512
D E +G+VA +IQCYM + ISEEEA + S++ + ++LN + + P+
Sbjct: 683 DTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELN-REFVNNKIPD 741
Query: 513 SMAKMCLDMSRTAHCIF-HGDGIGTSTGVS-RDRLVSLILEPI 553
++ + +R + GDG+ S + ++ + + + +P+
Sbjct: 742 IYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 168/521 (32%), Positives = 268/521 (51%), Gaps = 48/521 (9%)
Query: 71 ELLKLTDSVQKLGVAYHFEEEIKEAMNIL------KG-----DATIKDLNATSLHFRLLR 119
E L L D+++ LG+ HF++EIK A++ + +G D+ + DLN T+L R LR
Sbjct: 248 ERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLR 307
Query: 120 EHGHPVSTGT-----KRDGRFHDNLRE---DIEGLLNLFEASFLGIEGEDVLEEANIFCT 171
HG+ VS+ +GRF + + ++ ++NLF AS L E +++A F
Sbjct: 308 MHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAE 367
Query: 172 EHLKESLGT-LGSKIILAEQVQQSLDIPSYWRIPRIEAQNFI------------KLYPTD 218
+L+E+L T + + L ++++ ++ P + IPR+EA+++I LY
Sbjct: 368 PYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMP 427
Query: 219 DESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLC 278
S L LAKLD+N+VQS+HQ+ELK L RWW G + ++F R R+ E Y
Sbjct: 428 SLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYF--SSAT 484
Query: 279 FKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQI 338
F+ ++S RI TK C+ DD+ D++ ++DEL+ FTE VKRW+ ++L E+PE MQ
Sbjct: 485 FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDT-SLLHEIPECMQT 543
Query: 339 CYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIEN 398
C+ F E+ DV+K+ G + L++I+K WE Y+ E W GY PT +EY++
Sbjct: 544 CFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKT 603
Query: 399 AWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNS 458
+SVG + +L+ +D+ E KV H M SL RL+ND
Sbjct: 604 YAISVGLGPCTLQPILLMGELVKDDVVE------KV-HYPSNMFELVSLSWRLTNDTKTY 656
Query: 459 AVELKRGDVAKSIQCYMIEE-GISEEEARDRIKSLIIYSWKKLNGKNLYKS-DFPESMAK 516
E RG A I CYM + G +EE+A I ++ + K+ + + S D P
Sbjct: 657 QAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKS 716
Query: 517 MCLDMSRTAHCIFHG--DGIGTSTGVSRDRLVSLILEPIPV 555
++ R IF+ DG G + +D + + ++PI V
Sbjct: 717 FIFNL-RLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 38/267 (14%)
Query: 71 ELLKLTDSVQKLGVAYHFEEEIKEAMNILKGDAT-----------IKDLNATSLHFRLLR 119
E + + D +Q+LG++ +FEEEIKE ++ + T ++D++ T++ FRLLR
Sbjct: 247 EHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLR 306
Query: 120 EHGHPVSTGT----KRDGRFH---DNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTE 172
+HG+ VS +++G F + + G+ NL+ AS L E++L+ A F
Sbjct: 307 QHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYN 366
Query: 173 HL---KESLGTLGSKIILAE---QVQQSLDIPSYWRIPRIEAQNFIKLYPTDDES--GPI 224
+L +E + II+ + ++ +L+IP Y +PR+E + +I Y +++ G
Sbjct: 367 YLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKT 426
Query: 225 L-----------LTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLL 273
L L LAK DYN Q+ HQ E +W+ E R L+E Y L
Sbjct: 427 LYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSE-WGVRRSELLECYYL 485
Query: 274 VMGLCFKAQFSKCRIGLTKFVCILTAI 300
F+++ S R+ K ++ AI
Sbjct: 486 AAATIFESERSHERMVWAKSSVLVKAI 512
>pdb|3ZWU|A Chain A, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|3ZWU|B Chain B, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|4A9V|A Chain A, Pseudomonas Fluorescens Phox
pdb|4A9X|A Chain A, Pseudomonas Fluorescens Phox In Complex With The Substrate
Analogue Appcp
Length = 592
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 267 LMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIG 326
LM+ G F C G T + LT ++ D +GS + + F A KR+ +
Sbjct: 160 LMKTSADKHGKKVLGTFQNCANGKTPWGTYLTCEENFTDCFGSSNAQQQFDPAQKRYGVS 219
Query: 327 AVLEEL 332
A E+
Sbjct: 220 AASREI 225
>pdb|3T9J|A Chain A, Crystal Structure Hp-Nap From Strain Ys39 In Apo Form
pdb|3TA8|A Chain A, Crystal Structure Hp-Nap From Strain Ys39 Iron Loaded
(Cocrystallization 5mm)
pdb|4EVB|A Chain A, Crystal Structure Hp-Nap From Strain Ys39 Zinc Soaked
(20mm)
pdb|4EVC|A Chain A, Crystal Structure Hp-Nap From Strain Ys39 Cadmium Loaded
(Cocrystallization 50mm)
Length = 164
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 24 NYHASIWNPELIESFT----TPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
N+H WN + + F T YE +A+ D+L ++ L + SE LKLT
Sbjct: 43 NFH---WNVKGTDFFNVHKATEEIYEGFADMFDDLAERIAQLGHHPLVTLSEALKLTRVK 99
Query: 80 QKLGVAYHFEEEIKEAMNILKG-DATIKDLNATS 112
++ ++H ++ KE + K + K+L+ T+
Sbjct: 100 EETKTSFHSKDIFKEILEDYKHLEKEFKELSNTA 133
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 366 IKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGS 421
+ + W L T W SK + + EN + + P +IV AY+LL L S
Sbjct: 618 VNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDS 673
>pdb|1HK3|A Chain A, Human Serum Albumin Mutant R218p Complexed With Thyroxine
(3,3',5,5'-Tetraiodo-L-Thyronine)
Length = 585
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 154 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA 213
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 214 WAVAPLSQRFPK-------AEFAEVSKLVTDLTKVH 242
>pdb|3CX9|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
Myristic Acid And Lysophosphatidylethanolamine
pdb|3SQJ|A Chain A, Recombinant Human Serum Albumin From Transgenic Plant
pdb|3SQJ|B Chain B, Recombinant Human Serum Albumin From Transgenic Plant
Length = 582
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 152 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA 211
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 212 WAVARLSQRFPK-------AEFAEVSKLVTDLTKVH 240
>pdb|3JQ1|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Yp_001297730.1) From Bacteroides Vulgatus Atcc 8482 At
1.55 A Resolution
pdb|3JQ1|B Chain B, Crystal Structure Of Susd Superfamily Protein
(Yp_001297730.1) From Bacteroides Vulgatus Atcc 8482 At
1.55 A Resolution
Length = 481
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 55 KQKAKDLFASAKE---STSELLKLTDSVQK---------LGVAYHFEEEIKEAMNILK 100
K D++A AKE + + LL +T+ + K LG Y +EE +EA+N+L+
Sbjct: 147 KSSQADIWAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLE 204
>pdb|1BKE|A Chain A, Human Serum Albumin In A Complex With Myristic Acid And
Tri- Iodobenzoic Acid
Length = 581
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 151 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA 210
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 211 WAVARLSQRFPK-------AEFAEVSKLVTDLTKVH 239
>pdb|2I2Z|A Chain A, Human Serum Albumin Complexed With Myristate And Aspirin
Length = 585
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 154 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLXCASLQKFGERAFKA 213
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 214 WAVARLSQRFPK-------AEFAEVSKLVTDLTKVH 242
>pdb|1AO6|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1AO6|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1BM0|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1BM0|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1E7E|A Chain A, Human Serum Albumin Complexed With Decanoic Acid (Capric
Acid)
pdb|1E7F|A Chain A, Human Serum Albumin Complexed With Dodecanoic Acid (Lauric
Acid)
pdb|1E7G|A Chain A, Human Serum Albumin Complexed With Tetradecanoic Acid
(Myristic Acid) Human Serum Albumin Complexed With
Myristic Acid
pdb|1E7I|A Chain A, Human Serum Albumin Complexed With Octadecanoic Acid
(Stearic Acid)
pdb|1E7H|A Chain A, Human Serum Albumin Complexed With Hexadecanoic Acid
(Palmitic Acid)
pdb|1E7A|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7A|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7B|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
pdb|1E7B|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
pdb|1E7C|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
General Anesthetic Halothane
pdb|1E78|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1E78|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1H9Z|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
R-(+) Enantiomer Of Warfarin
pdb|1HA2|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
S- (-) Enantiomer Of Warfarin
pdb|1GNI|A Chain A, Human Serum Albumin Complexed With Cis-9-Octadecenoic Acid
(Oleic Acid)
pdb|1GNJ|A Chain A, Human Serum Albumin Complexed With Cis-5,8,11,14-
Eicosatetraenoic Acid (Arachidonic Acid)
pdb|1O9X|A Chain A, Human Serum Albumin Complexed With Tetradecanoic Acid
(Myristic Acid) And Hemin
pdb|1HK1|A Chain A, Human Serum Albumin Complexed With Thyroxine (3,3',5,5'-
Tetraiodo-L-Thyronine)
pdb|1HK4|A Chain A, Human Serum Albumin Complexed With Thyroxine (3,3',5,5'-
Tetraiodo-L-Thyronine) And Myristic Acid (Tetradecanoic
Acid)
pdb|1N5U|A Chain A, X-Ray Study Of Human Serum Albumin Complexed With Heme
pdb|2BX8|A Chain A, Human Serum Albumin Complexed With Azapropazone
pdb|2BX8|B Chain B, Human Serum Albumin Complexed With Azapropazone
pdb|2BXA|A Chain A, Human Serum Albumin Complexed With 3-Carboxy-4-Methyl-5-
Propyl-2-Furanpropanoic Acid (Cmpf)
pdb|2BXA|B Chain B, Human Serum Albumin Complexed With 3-Carboxy-4-Methyl-5-
Propyl-2-Furanpropanoic Acid (Cmpf)
pdb|2BXB|A Chain A, Human Serum Albumin Complexed With Oxyphenbutazone
pdb|2BXB|B Chain B, Human Serum Albumin Complexed With Oxyphenbutazone
pdb|2BXC|A Chain A, Human Serum Albumin Complexed With Phenylbutazone
pdb|2BXC|B Chain B, Human Serum Albumin Complexed With Phenylbutazone
pdb|2BXD|A Chain A, Human Serum Albumin Complexed With Warfarin
pdb|2BXD|B Chain B, Human Serum Albumin Complexed With Warfarin
pdb|2BXE|A Chain A, Human Serum Albumin Complexed With Diflunisal
pdb|2BXE|B Chain B, Human Serum Albumin Complexed With Diflunisal
pdb|2BXF|A Chain A, Human Serum Albumin Complexed With Diazepam
pdb|2BXF|B Chain B, Human Serum Albumin Complexed With Diazepam
pdb|2BXG|A Chain A, Human Serum Albumin Complexed With Ibuprofen
pdb|2BXG|B Chain B, Human Serum Albumin Complexed With Ibuprofen
pdb|2BXH|A Chain A, Human Serum Albumin Complexed With Indoxyl Sulfate
pdb|2BXH|B Chain B, Human Serum Albumin Complexed With Indoxyl Sulfate
pdb|2BXL|A Chain A, Human Serum Albumin Complexed With Myristate And 3,5-
Diiodosalicylic Acid
pdb|2BXM|A Chain A, Human Serum Albumin Complexed With Myristate And
Indomethacin
pdb|2BXN|A Chain A, Human Serum Albumin Complexed With Myristate And
Iodipamide
pdb|2BXO|A Chain A, Human Serum Albumin Complexed With Myristate And
Oxyphenbutazone
pdb|2BXP|A Chain A, Human Serum Albumin Complexed With Myristate And
Phenylbutazone
pdb|2ESG|C Chain C, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2I30|A Chain A, Human Serum Albumin Complexed With Myristate And Salicylic
Acid
pdb|1BJ5|A Chain A, Human Serum Albumin Complexed With Myristic Acid
pdb|1UOR|A Chain A, X-Ray Study Of Recombinant Human Serum Albumin. Phases
Determined By Molecular Replacement Method, Using Low
Resolution Structure Model Of Tetragonal Form Of Human
Serum Albumin
pdb|3B9L|A Chain A, Human Serum Albumin Complexed With Myristate And Azt
pdb|3B9M|A Chain A, Human Serum Albumin Complexed With Myristate, 3'-Azido-3'-
Deoxythymidine (Azt) And Salicylic Acid
pdb|2VUE|A Chain A, Human Serum Albumin Complexed With 4z,15e-Bilirubin-Ix-
Alpha
pdb|2VUE|B Chain B, Human Serum Albumin Complexed With 4z,15e-Bilirubin-Ix-
Alpha
pdb|2VUF|A Chain A, Human Serum Albumin Complexed With Fusidic Acid
pdb|2VUF|B Chain B, Human Serum Albumin Complexed With Fusidic Acid
pdb|3A73|A Chain A, Crystal Structure Analysis Of Human Serum Albumin
Complexed With Delta 12-Prostaglandin J2
pdb|3A73|B Chain B, Crystal Structure Analysis Of Human Serum Albumin
Complexed With Delta 12-Prostaglandin J2
pdb|3JQZ|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
Lidocaine
pdb|3JQZ|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
Lidocaine
pdb|3JRY|A Chain A, Human Serum Albumin With Bound Sulfate
pdb|3JRY|B Chain B, Human Serum Albumin With Bound Sulfate
pdb|3LU6|A Chain A, Human Serum Albumin In Complex With Compound 1
pdb|3LU6|B Chain B, Human Serum Albumin In Complex With Compound 1
pdb|3LU7|A Chain A, Human Serum Albumin In Complex With Compound 2
pdb|3LU7|B Chain B, Human Serum Albumin In Complex With Compound 2
pdb|3LU8|A Chain A, Human Serum Albumin In Complex With Compound 3
pdb|3LU8|B Chain B, Human Serum Albumin In Complex With Compound 3
pdb|2XVQ|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Sarcosine
pdb|2XVQ|B Chain B, Human Serum Albumin Complexed With Dansyl-L-Sarcosine
pdb|2XVU|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Asparagine
pdb|2XVU|B Chain B, Human Serum Albumin Complexed With Dansyl-L-Asparagine
pdb|2XW0|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Phenylalanine
pdb|2XW0|B Chain B, Human Serum Albumin Complexed With Dansyl-L-Phenylalanine
pdb|2XW1|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Norvaline
pdb|2XW1|B Chain B, Human Serum Albumin Complexed With Dansyl-L-Norvaline
pdb|2YDF|A Chain A, Human Serum Albumin Complexed With Iophenoxic Acid
pdb|2YDF|B Chain B, Human Serum Albumin Complexed With Iophenoxic Acid
pdb|4EMX|A Chain A, Crystal Structure Analysis Of Human Serum Albumin In
Complex With Chloride Anions At Cryogenic Temperature
pdb|4EMX|B Chain B, Crystal Structure Analysis Of Human Serum Albumin In
Complex With Chloride Anions At Cryogenic Temperature
pdb|4E99|A Chain A, Human Serum Albumin Complex With Perfluorooctane Sulfonate
Potassium
pdb|3TDL|A Chain A, Structure Of Human Serum Albumin In Complex With Dauda
pdb|3UIV|A Chain A, Human Serum Albumin-Myristate-Amantadine Hydrochloride
Complex
pdb|3UIV|H Chain H, Human Serum Albumin-Myristate-Amantadine Hydrochloride
Complex
Length = 585
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 154 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA 213
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 214 WAVARLSQRFPK-------AEFAEVSKLVTDLTKVH 242
>pdb|2BXI|A Chain A, Human Serum Albumin Complexed With Myristate And
Azapropazone
pdb|2BXK|A Chain A, Human Serum Albumin Complexed With Myristate, Azapropazone
And Indomethacin
pdb|2BXQ|A Chain A, Human Serum Albumin Complexed With Myristate,
Phenylbutazone And Indomethacin
pdb|2XSI|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Glutamate And
Myristic Acid
pdb|2XVV|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Asparagine And
Myristic Acid
pdb|2XVW|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Arginine And
Myristic Acid
Length = 585
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 154 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA 213
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 214 WAVARLSQRFPK-------AEFAEVSKLVTDLTKVH 242
>pdb|2VDB|A Chain A, Structure Of Human Serum Albumin With S-Naproxen And The
Ga Module
Length = 579
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 149 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA 208
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 209 WAVARLSQRFPK-------AEFAEVSKLVTDLTKVH 237
>pdb|1TF0|A Chain A, Crystal Structure Of The Ga Module Complexed With Human
Serum Albumin
Length = 572
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 154 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA 213
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 214 WAVARLSQRFPK-------AEFAEVSKLVTDLTKVH 242
>pdb|1HK2|A Chain A, Human Serum Albumin Mutant R218h Complexed With Thyroxine
(3,3',5,5'-Tetraiodo-L-Thyronine)
pdb|1HK5|A Chain A, Human Serum Albumin Mutant R218h Complexed With Thyroxine
(3,3',5,5'-Tetraiodo-L-Thyronine) And Myristic Acid
(Tetradecanoic Acid)
Length = 585
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 272 LLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS--------IDELELFTE-AVKR 322
LL +KA F++C K C+L +D++ D + L+ F E A K
Sbjct: 154 LLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA 213
Query: 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIH 358
W + + + P+ A F ++L D+ K+H
Sbjct: 214 WAVAHLSQRFPK-------AEFAEVSKLVTDLTKVH 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,825,295
Number of Sequences: 62578
Number of extensions: 710218
Number of successful extensions: 1994
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1863
Number of HSP's gapped (non-prelim): 37
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)