Query 044890
Match_columns 557
No_of_seqs 236 out of 909
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:30:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 7E-163 2E-167 1332.0 48.6 527 17-555 19-554 (554)
2 3n0f_A Isoprene synthase; terp 100.0 2E-162 6E-167 1330.6 46.4 528 17-554 12-551 (555)
3 3m00_A Aristolochene synthase; 100.0 4E-162 1E-166 1325.0 49.2 527 17-555 14-550 (550)
4 2ong_A 4S-limonene synthase; m 100.0 3E-156 1E-160 1286.9 50.1 527 19-554 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 6E-156 2E-160 1284.5 44.5 528 18-554 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 2E-155 7E-160 1283.7 42.1 526 17-554 32-569 (569)
7 3p5p_A Taxadiene synthase; cla 100.0 7E-140 2E-144 1188.3 49.4 496 48-555 221-756 (764)
8 3s9v_A Abietadiene synthase, c 100.0 1E-139 4E-144 1189.1 47.7 496 48-554 245-785 (785)
9 3sdr_A Alpha-bisabolene syntha 100.0 1E-139 4E-144 1193.8 47.2 500 48-555 273-817 (817)
10 3pya_A ENT-copalyl diphosphate 100.0 1E-105 4E-110 900.7 36.9 443 48-554 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.3E-51 4.5E-56 429.2 18.3 251 237-504 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 8.1E-49 2.8E-53 401.3 20.6 242 239-504 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 2.7E-47 9.1E-52 394.0 21.5 244 237-504 25-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 1.3E-45 4.6E-50 391.5 20.2 243 247-504 66-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 3.7E-32 1.3E-36 291.9 18.5 247 242-504 129-390 (433)
16 1yyq_A Trichodiene synthase; t 99.7 1.6E-17 5.3E-22 175.1 16.1 229 246-503 34-276 (374)
17 3sdr_A Alpha-bisabolene syntha 97.4 3.9E-05 1.3E-09 88.0 2.5 57 7-63 11-68 (817)
18 4hd1_A Squalene synthase HPNC; 84.8 28 0.00095 34.6 16.2 186 286-515 40-239 (294)
19 3lmd_A Geranylgeranyl pyrophos 83.6 13 0.00046 38.3 13.5 105 361-478 160-275 (360)
20 3acx_A Dehydrosqualene synthas 82.1 21 0.00072 35.4 14.0 182 285-503 38-232 (293)
21 3ipi_A Geranyltranstransferase 78.1 20 0.00069 35.9 12.3 128 361-501 127-261 (295)
22 3rmg_A Octaprenyl-diphosphate 75.9 25 0.00086 35.7 12.5 90 360-460 132-221 (334)
23 3oyr_A Trans-isoprenyl diphosp 73.4 46 0.0016 34.0 13.7 90 360-460 150-239 (345)
24 3mzv_A Decaprenyl diphosphate 71.1 73 0.0025 32.4 14.7 89 360-459 138-226 (341)
25 2ftz_A Geranyltranstransferase 69.0 52 0.0018 32.6 12.7 123 361-502 134-264 (284)
26 1rtr_A Geranyltranstransferase 68.0 23 0.00079 35.5 9.9 113 371-502 148-271 (301)
27 3p8l_A Geranyltranstransferase 66.5 33 0.0011 34.4 10.7 113 371-502 156-279 (302)
28 3m0g_A Farnesyl diphosphate sy 66.0 25 0.00085 35.2 9.6 113 371-502 147-269 (297)
29 3ts7_A Geranyltranstransferase 64.9 39 0.0013 34.2 11.0 113 371-501 158-281 (324)
30 3apz_A Geranyl diphosphate syn 62.9 66 0.0023 32.7 12.4 89 361-460 153-241 (348)
31 3pko_A Geranylgeranyl pyrophos 61.3 1.4E+02 0.0048 30.1 14.4 105 361-477 143-258 (334)
32 4dhd_A Polyprenyl synthetase; 61.1 46 0.0016 34.2 10.8 88 362-459 133-231 (358)
33 3p8r_A Geranyltranstransferase 61.1 30 0.001 34.7 9.2 114 371-502 158-282 (302)
34 4f62_A Geranyltranstransferase 60.4 39 0.0013 34.2 9.9 113 372-502 152-275 (317)
35 2h8o_A Geranyltranstransferase 60.3 36 0.0012 34.7 9.7 113 371-502 192-315 (335)
36 3lsn_A Geranyltranstransferase 59.9 36 0.0012 34.1 9.5 112 373-501 154-275 (304)
37 1wy0_A Geranylgeranyl pyrophos 55.6 51 0.0018 33.4 10.0 87 362-459 138-224 (342)
38 3lom_A Geranyltranstransferase 53.2 50 0.0017 33.3 9.3 114 371-501 158-282 (313)
39 3pde_A Farnesyl-diphosphate sy 52.8 84 0.0029 31.5 10.9 112 372-502 156-278 (309)
40 3uca_A Geranyltranstransferase 52.3 71 0.0024 32.3 10.3 114 371-502 180-304 (324)
41 1rqj_A Geranyltranstransferase 50.1 83 0.0028 31.3 10.3 114 371-502 152-276 (299)
42 3mav_A Farnesyl pyrophosphate 44.9 1.4E+02 0.0048 30.8 11.5 91 362-459 179-292 (395)
43 3nf2_A Putative polyprenyl syn 44.8 1.1E+02 0.0039 31.1 10.6 87 362-459 144-230 (352)
44 3npk_A Geranyltranstransferase 44.6 1.9E+02 0.0064 28.7 11.9 115 370-502 144-266 (291)
45 1c07_A Protein (epidermal grow 44.4 73 0.0025 25.3 7.4 73 52-129 10-87 (95)
46 3tc1_A Octaprenyl pyrophosphat 44.1 2.2E+02 0.0077 28.4 12.5 103 361-478 122-235 (315)
47 3llw_A Geranyltranstransferase 43.4 82 0.0028 31.6 9.1 116 370-502 158-281 (311)
48 1wmw_A Geranylgeranyl diphosph 42.4 1.4E+02 0.0046 30.1 10.6 87 361-459 130-218 (330)
49 2q80_A Geranylgeranyl pyrophos 40.8 1.1E+02 0.0037 30.5 9.5 86 360-459 110-195 (301)
50 2j1p_A Geranylgeranyl pyrophos 39.9 32 0.0011 34.3 5.3 111 372-502 161-272 (293)
51 2q58_A Fragment, farnesyl pyro 39.0 31 0.0011 35.5 5.3 92 362-460 169-261 (368)
52 2her_A Fragment, farnesyl pyro 38.6 1.4E+02 0.0048 30.7 10.1 90 361-459 168-260 (368)
53 1qjt_A EH1, epidermal growth f 33.3 84 0.0029 25.4 6.1 56 71-129 29-87 (99)
54 3kra_B Geranyl diphosphate syn 31.1 56 0.0019 32.2 5.4 95 372-501 150-244 (274)
55 1fi6_A EH domain protein REPS1 30.7 66 0.0023 25.4 5.0 57 70-129 26-85 (92)
56 2e8v_A Geranylgeranyl pyrophos 30.6 1.2E+02 0.0042 30.6 8.0 88 362-460 132-221 (340)
57 1uby_A FPS, farnesyl diphospha 30.4 2E+02 0.0068 29.4 9.7 91 361-460 169-264 (367)
58 1pd3_A Nonstructural protein N 29.8 60 0.0021 23.9 3.9 35 47-82 14-48 (58)
59 3aqb_B Component B of hexapren 29.1 1.3E+02 0.0046 30.0 8.0 89 361-460 130-218 (325)
60 2azj_A Geranylgeranyl pyrophos 27.6 1.9E+02 0.0066 28.5 8.7 119 362-502 136-258 (289)
61 1yhl_A Farnesyl pyrophosphate 27.6 1.9E+02 0.0064 29.4 8.9 108 361-478 151-284 (362)
62 3vj8_A Squalene synthase; farn 26.6 5E+02 0.017 26.0 16.0 214 259-503 12-246 (343)
63 1v4e_A Octoprenyl-diphosphate 26.4 2E+02 0.0068 28.5 8.6 87 360-461 126-212 (299)
64 3s9v_A Abietadiene synthase, c 23.8 28 0.00096 39.7 1.9 40 24-63 5-45 (785)
65 3lk5_A Geranylgeranyl pyrophos 20.5 2.2E+02 0.0075 29.3 7.7 81 369-459 183-263 (380)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=6.6e-163 Score=1332.02 Aligned_cols=527 Identities=31% Similarity=0.602 Sum_probs=490.6
Q ss_pred CCcCCCCCCCCCCCCccccccCCCcccHHHHHHHHHHHHHHHHHHhhh-cchhhhhhhhHHHHHHHhCcccccHHHHHHH
Q 044890 17 PLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFAS-AKESTSELLKLTDSVQKLGVAYHFEEEIKEA 95 (557)
Q Consensus 17 ~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~ 95 (557)
++.||+||||||+|||+||+| ++++..+.+.+++++||++||+||.+ ..| ++++|+|||+||||||+|||++||+++
T Consensus 19 ~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~-~~~~l~lID~lqrLGi~~hF~~EI~~~ 96 (554)
T 3g4d_A 19 DEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPMAN-STQKLAFIDSVQRLGVSYHFTKEIEDE 96 (554)
T ss_dssp ------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred CCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 457999999999999999998 66666778899999999999999975 467 999999999999999999999999999
Q ss_pred HHhh-hcCC-CCCchhhHHHHHHHhhhcCccccccc-----cCCCCcccccchhhHHHHHHHhhcCCCCCCchHHHHHHH
Q 044890 96 MNIL-KGDA-TIKDLNATSLHFRLLREHGHPVSTGT-----KRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANI 168 (557)
Q Consensus 96 L~~i-~~~~-~~~dl~~~al~FRlLR~~Gy~vS~dv-----~~~g~F~~~l~~dv~gll~LyeAs~l~~~gE~iLdea~~ 168 (557)
|++| +... ...||++|||+|||||||||+||||| |++|+|++++.+||+|||||||||||++|||+|||||+.
T Consensus 97 L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~ 176 (554)
T 3g4d_A 97 LENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAIS 176 (554)
T ss_dssp HHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 9999 4322 23799999999999999999999999 678999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhcCCCCCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCCCCHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 044890 169 FCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELA 248 (557)
Q Consensus 169 ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~ls 248 (557)
||++||++.+.+ ++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++++
T Consensus 177 fs~~~L~~~~~~--~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~ 254 (554)
T 3g4d_A 177 FTTHHLSLAVAS--LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEIC 254 (554)
T ss_dssp HHHHHHHHHSTT--CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999998876 788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhccccc
Q 044890 249 RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAV 328 (557)
Q Consensus 249 rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~~~~ 328 (557)
||||++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||+++
T Consensus 255 rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~- 333 (554)
T 3g4d_A 255 RWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKC- 333 (554)
T ss_dssp HHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGG-
T ss_pred HHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccc-
Confidence 9999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHH
Q 044890 329 LEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAA 408 (557)
Q Consensus 329 ~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~ 408 (557)
+++||+|||+||.+|+|+++|++.++.+.+|.++++|++++|+++++||++||+|+++||+||+||||+||++|+|++++
T Consensus 334 ~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l 413 (554)
T 3g4d_A 334 IDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAML 413 (554)
T ss_dssp GGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHH
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCCCHHHHHHH
Q 044890 409 IVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDR 488 (557)
Q Consensus 409 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~EeA~~~ 488 (557)
++++++|| |+.+|+++++|+. ++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+|+|+++
T Consensus 414 ~~~~~~~m----g~~lt~e~~e~~~---~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~ 486 (554)
T 3g4d_A 414 AITSFVGM----GDIVTPETFKWAA---SDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDV 486 (554)
T ss_dssp HHHHHHTS----CTTSCHHHHHHHH---TCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHhc----CCCCCHHHHHhcc---ccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHH
Confidence 99999999 9999999999976 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCchhHHHHHHhhhhcCccC
Q 044890 489 IKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEPIPV 555 (557)
Q Consensus 489 i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~~~k~~i~~l~~~pi~~ 555 (557)
++++|+++||+||++|++++++|++|+++++|+||++++||+ +||||.|+..||++|++||++|||+
T Consensus 487 i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 487 FNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999999999889999999999999999999999 9999999888999999999999985
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.6e-162 Score=1330.62 Aligned_cols=528 Identities=41% Similarity=0.766 Sum_probs=497.4
Q ss_pred CCcCCCCCCCCCCCCccccccCCCcccHHHHHHHHHHHHHHHHHHhhhcc-hhhhhhhhHHHHHHHhCcccccHHHHHHH
Q 044890 17 PLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAK-ESTSELLKLTDSVQKLGVAYHFEEEIKEA 95 (557)
Q Consensus 17 ~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~-d~~~~~l~liD~lqrLGi~~hF~~EI~~~ 95 (557)
+..||+||||||+|||+||+|+++++..+.+.+++++||++||+||.+.. + ++++|+|||+||||||+|||++||+++
T Consensus 12 ~~~~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~-~~~~L~lID~lqRLGi~~hF~~EI~~~ 90 (555)
T 3n0f_A 12 SEARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAE-FLTLLELIDNVQRLGLGYRFESDIRRA 90 (555)
T ss_dssp -----CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHHTTCGGGSHHHHHHH
T ss_pred cccCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 56799999999999999999877666677899999999999999997655 7 999999999999999999999999999
Q ss_pred HHhh-hcC----CCCCchhhHHHHHHHhhhcCccccccc-----cCCCCcccccchhhHHHHHHHhhcCCCCCCchHHHH
Q 044890 96 MNIL-KGD----ATIKDLNATSLHFRLLREHGHPVSTGT-----KRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEE 165 (557)
Q Consensus 96 L~~i-~~~----~~~~dl~~~al~FRlLR~~Gy~vS~dv-----~~~g~F~~~l~~dv~gll~LyeAs~l~~~gE~iLde 165 (557)
|++| +.. ....||++|||+|||||||||+||||| |++|+|++++.+||+|||||||||||++|||+||||
T Consensus 91 L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLde 170 (555)
T 3n0f_A 91 LDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDE 170 (555)
T ss_dssp HHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHH
T ss_pred HHHHHhhccccccccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHH
Confidence 9999 421 124799999999999999999999999 688999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhcCCCCCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCCCCHHHHHHHHhhhHHHHHhhHHHHH
Q 044890 166 ANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELK 245 (557)
Q Consensus 166 a~~ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~ 245 (557)
|++||++||++.+.. .++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||+
T Consensus 171 A~~Fs~~~L~~~~~~-~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 249 (555)
T 3n0f_A 171 ARVFAISHLKELSEE-KIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLR 249 (555)
T ss_dssp HHHHHHHHHHTCCHH-HHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHH
Confidence 999999999987652 1578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhcc
Q 044890 246 ELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEI 325 (557)
Q Consensus 246 ~lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~ 325 (557)
+++||||++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||+
T Consensus 250 ~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~ 329 (555)
T 3n0f_A 250 ETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDV 329 (555)
T ss_dssp HHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccch
Q 044890 326 GAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGS 405 (557)
Q Consensus 326 ~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~ 405 (557)
++ +++||+|||+||.+|+++++|++.++.+++|+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+
T Consensus 330 ~~-~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~ 408 (555)
T 3n0f_A 330 NA-INDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSG 408 (555)
T ss_dssp GG-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSH
T ss_pred cc-cccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCCCHHHH
Q 044890 406 PAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEA 485 (557)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~EeA 485 (557)
++++++++++| |+.+|+++++|+. ++|+|++++++|+||+|||+||++|++||+++|+|+|||+|+|+|+|+|
T Consensus 409 ~~l~~~~~~~m----g~~lt~e~~e~~~---~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA 481 (555)
T 3n0f_A 409 PLQLIFAYFAV----VQNIKKEEIENLQ---KYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELA 481 (555)
T ss_dssp HHHHHHHHHHH----CSSCCHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhc----CCCCCHHHHHhcc---cchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHH
Confidence 99999999999 9999999999976 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCchhHHHHHHhhhhcCcc
Q 044890 486 RDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEPIP 554 (557)
Q Consensus 486 ~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~~~k~~i~~l~~~pi~ 554 (557)
+++++++|+++||+||++|++++++|++|+++++|+||++++||+ +||||.|+..||++|++||++|||
T Consensus 482 ~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 482 TESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999999999999889999999999999999999999 999999977899999999999997
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=3.9e-162 Score=1324.96 Aligned_cols=527 Identities=30% Similarity=0.607 Sum_probs=500.1
Q ss_pred CCcCCCCCCCCCCCCccccccCCCcccHHHHHHHHHHHHHHHHHHhhh-cchhhhhhhhHHHHHHHhCcccccHHHHHHH
Q 044890 17 PLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFAS-AKESTSELLKLTDSVQKLGVAYHFEEEIKEA 95 (557)
Q Consensus 17 ~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~ 95 (557)
.+.||+||||||+|||+||+|+++++..+.+.+++++||++||+||.+ ..| ++++|+|||+||||||+|||++||+++
T Consensus 14 ~~~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~-~~~~L~lID~lqrLGi~~hF~~EI~~~ 92 (550)
T 3m00_A 14 EIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMK-LADTLNLIDTIERLGISYHFEKEIDDI 92 (550)
T ss_dssp --CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCC-HHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred ccCCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 357999999999999999999877666778899999999999999975 467 999999999999999999999999999
Q ss_pred HHhh-hcCCCCCchhhHHHHHHHhhhcCccccccc-----cCCCCcccccchhhHHHHHHHhhcCCCCCCchHHHHHHHH
Q 044890 96 MNIL-KGDATIKDLNATSLHFRLLREHGHPVSTGT-----KRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIF 169 (557)
Q Consensus 96 L~~i-~~~~~~~dl~~~al~FRlLR~~Gy~vS~dv-----~~~g~F~~~l~~dv~gll~LyeAs~l~~~gE~iLdea~~f 169 (557)
|++| +......||++|||+|||||||||+||||| |++|+|++++.+||+|||||||||||++|||+|||||+.|
T Consensus 93 L~~i~~~~~~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~f 172 (550)
T 3m00_A 93 LDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAF 172 (550)
T ss_dssp HHHHHHHCCCCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 9999 433224799999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCcchHHHhhhhcCCcccCCchhhHHHHhhh-hcCCCCCCCHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 044890 170 CTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIK-LYPTDDESGPILLTLAKLDYNLVQSIHQQELKELA 248 (557)
Q Consensus 170 t~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~-~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~ls 248 (557)
|++||++.+.+ ++++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||+||++||+||++++
T Consensus 173 s~~~L~~~~~~--~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~ 250 (550)
T 3m00_A 173 STIHLESAAPH--LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVS 250 (550)
T ss_dssp HHHHHHHHGGG--CCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--cCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999998876 7788999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhccccc
Q 044890 249 RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAV 328 (557)
Q Consensus 249 rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~~~~ 328 (557)
||||++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||+++
T Consensus 251 rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~- 329 (550)
T 3m00_A 251 RWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE- 329 (550)
T ss_dssp HHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGG-
T ss_pred HHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccc-
Confidence 9999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHH
Q 044890 329 LEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAA 408 (557)
Q Consensus 329 ~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~ 408 (557)
+++||+|||+||.+|+|+++|++.++.+.+|.++++|++++|+++++||++||+|+++||+||+||||+||++|+|++++
T Consensus 330 ~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l 409 (550)
T 3m00_A 330 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLL 409 (550)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCCCHHHHHHH
Q 044890 409 IVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDR 488 (557)
Q Consensus 409 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~EeA~~~ 488 (557)
++++|+|+ +.+|+++++|+. ++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+|+|+++
T Consensus 410 ~~~~f~g~-----~~lt~e~~e~~~---~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~ 481 (550)
T 3m00_A 410 ATTSYLGM-----KSATEQDFEWLS---KNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAK 481 (550)
T ss_dssp HHHHHHTC-----TTCCHHHHHHHH---TCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcC-----CCCcHHHHHhhc---ccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHH
Confidence 88886643 459999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-c-CCCCCCchhHHHHHHhhhhcCccC
Q 044890 489 IKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-G-DGIGTSTGVSRDRLVSLILEPIPV 555 (557)
Q Consensus 489 i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~-D~~t~~~~~~k~~i~~l~~~pi~~ 555 (557)
+++||+++||+||++|++++++|++|+++++|+||+++++|+ + ||||.|+..||++|++||++|||+
T Consensus 482 i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 482 FQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 999999999999999999889999999999999999999999 8 999999778999999999999986
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=3.1e-156 Score=1286.94 Aligned_cols=527 Identities=41% Similarity=0.740 Sum_probs=506.9
Q ss_pred cCCCCCCCCCCCCccccccCCCcccHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHhCcccccHHHHHHHHHh
Q 044890 19 QRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNI 98 (557)
Q Consensus 19 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~ 98 (557)
.||++|||||+|||+||++.++.+..+.+.+++++||++||+|+.++.| ++++|+|||+||||||+|||++||+++|++
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d-~~~~l~liD~lqrLGi~~hF~~EI~~~L~~ 79 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETD-QIRQLELIDDLQRMGLSDHFQNEFKEILSS 79 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTGGGTTHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHhCCchhhhHHHHHHHHHH
Confidence 4899999999999999998766666668899999999999999988778 999999999999999999999999999999
Q ss_pred h-hcCC-------C-CCchhhHHHHHHHhhhcCccccccc-----cCCCCcccccchhhHHHHHHHhhcCCCCCCchHHH
Q 044890 99 L-KGDA-------T-IKDLNATSLHFRLLREHGHPVSTGT-----KRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLE 164 (557)
Q Consensus 99 i-~~~~-------~-~~dl~~~al~FRlLR~~Gy~vS~dv-----~~~g~F~~~l~~dv~gll~LyeAs~l~~~gE~iLd 164 (557)
| +... . ..||++|||+|||||||||+||||| |++|+|++++++||+|||||||||||++|||+|||
T Consensus 80 i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ 159 (543)
T 2ong_A 80 IYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLE 159 (543)
T ss_dssp HHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHH
T ss_pred HHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHH
Confidence 9 3211 1 4699999999999999999999999 78999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhcCCCCCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCCCCHHHHHHHHhhhHHHHHhhHHHH
Q 044890 165 EANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQEL 244 (557)
Q Consensus 165 ea~~ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 244 (557)
||++||++||++++.++.++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||
T Consensus 160 eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El 239 (543)
T 2ong_A 160 SAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEEL 239 (543)
T ss_dssp HHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999998753237899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhc
Q 044890 245 KELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWE 324 (557)
Q Consensus 245 ~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd 324 (557)
++++|||+++||.+++||||||+++||||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||
T Consensus 240 ~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD 319 (543)
T 2ong_A 240 KESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWD 319 (543)
T ss_dssp HHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccc
Q 044890 325 IGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVG 404 (557)
Q Consensus 325 ~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG 404 (557)
+++ +++||+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||++|.+|+|
T Consensus 320 ~~~-~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g 398 (543)
T 2ong_A 320 INS-IDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSIS 398 (543)
T ss_dssp SST-TTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTC
T ss_pred ccc-cccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccch
Confidence 998 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCCCHHH
Q 044890 405 SPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEE 484 (557)
Q Consensus 405 ~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~Ee 484 (557)
+++++++++++| |..+|+++++|+. ++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+
T Consensus 399 ~~~l~~~~~~~~----g~~~t~e~~e~~~---~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~ee 471 (543)
T 2ong_A 399 GPCMLTHIFFRV----TDSFTKETVDSLY---KYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE 471 (543)
T ss_dssp HHHHHHHHHHHH----SSCCCHHHHHHHT---TTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHc----CCCCCHHHHHHhc---ccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHH
Confidence 999999999999 9999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-ccCCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCchhHHHHHHhhhhcCcc
Q 044890 485 ARDRIKSLIIYSWKKLNGKN-LYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEPIP 554 (557)
Q Consensus 485 A~~~i~~~i~~~wk~ln~e~-l~~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~~~k~~i~~l~~~pi~ 554 (557)
|+++++++|+++||+||+++ ++++++|++|+++++|++|+++++|+ +||||.|+..+|++|++||++|||
T Consensus 472 A~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 472 ARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999999999999 99889999999999999999999999 999999987899999999999996
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=5.7e-156 Score=1284.47 Aligned_cols=528 Identities=40% Similarity=0.700 Sum_probs=483.1
Q ss_pred CcCCCCCCCCCCCCccccccCCCcccHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHhCcccccHHHHHHHHH
Q 044890 18 LQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMN 97 (557)
Q Consensus 18 ~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~L~ 97 (557)
+.||++|||||+|||+||+++++++..+.+.+++++||++||+|+.++.| ++++|+|||+||||||+|||++||+++|+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d-~~~~l~lvD~lqrLGi~~hF~~EI~~~L~ 82 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKME-PVQQLELIHDLKYLGLSDFFQDEIKEILG 82 (549)
T ss_dssp -----------CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCcccCCCcchhhhHHHHHHHHHHHHHHHHHhcccC-HHHHHHhHHHHHhCCchhhhHHHHHHHHH
Confidence 46999999999999999976655566678899999999999999988778 99999999999999999999999999999
Q ss_pred hh-hcC----CC---CCchhhHHHHHHHhhhcCccccccc-----cCCC-CcccccchhhHHHHHHHhhcCCCCCCchHH
Q 044890 98 IL-KGD----AT---IKDLNATSLHFRLLREHGHPVSTGT-----KRDG-RFHDNLREDIEGLLNLFEASFLGIEGEDVL 163 (557)
Q Consensus 98 ~i-~~~----~~---~~dl~~~al~FRlLR~~Gy~vS~dv-----~~~g-~F~~~l~~dv~gll~LyeAs~l~~~gE~iL 163 (557)
+| +.. .. ..|||+|||+|||||||||+||||| |++| +|++++++||+|||||||||||++|||+||
T Consensus 83 ~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL 162 (549)
T 1n1b_A 83 VIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL 162 (549)
T ss_dssp HHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHH
Confidence 99 321 11 4799999999999999999999999 7889 999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHhcCC--CCCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCCCCHHHHHHHHhhhHHHHHhhH
Q 044890 164 EEANIFCTEHLKESLGTL--GSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQ 241 (557)
Q Consensus 164 dea~~ft~~~L~~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq 241 (557)
|||++||++||++.+.++ .++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||
T Consensus 163 ~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 242 (549)
T 1n1b_A 163 ELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQ 242 (549)
T ss_dssp HHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHH
Confidence 999999999999998752 227889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHH
Q 044890 242 QELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVK 321 (557)
Q Consensus 242 ~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~ 321 (557)
+||++++|||+++||.+++||+|||+++||||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+
T Consensus 243 ~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~ 322 (549)
T 1n1b_A 243 QELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK 322 (549)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999987899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccc
Q 044890 322 RWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWV 401 (557)
Q Consensus 322 rWd~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~ 401 (557)
|||+++ +++||+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||++|.+
T Consensus 323 rWD~~~-~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~v 401 (549)
T 1n1b_A 323 RWDTES-ITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 401 (549)
T ss_dssp HTCSSG-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hcCccc-cccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhccc
Confidence 999998 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCChhH-HhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCC
Q 044890 402 SVGSPAAIVHAYILLQLQGSNDLTENS-LSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGI 480 (557)
Q Consensus 402 SsG~~~~~~~~~~~~~~~~g~~l~~ev-~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gv 480 (557)
|+|+++++++++++| |..+|+++ ++|+. ++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+
T Consensus 402 S~g~~~l~~~~~~~~----g~~lt~e~~~e~~~---~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~ 474 (549)
T 1n1b_A 402 SVASPAIISPTYFTF----ANASHDTAVIDSLY---QYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNA 474 (549)
T ss_dssp HTCHHHHHHHHHTTS----TTCCCCHHHHHHHH---TTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHHc----CCCCcHHHHHhhhc---ccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCC
Confidence 999999999999999 99999999 99987 89999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCchhHHHHHHhhhhcCcc
Q 044890 481 SEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEPIP 554 (557)
Q Consensus 481 S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~~~k~~i~~l~~~pi~ 554 (557)
|+|+|+++++++|+++||+||++|++++++|++|+++++|++|+++++|+ +||||.|+..||++|++||++|||
T Consensus 475 s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 475 SEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999889999999999999999999999 999999977899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.1e-155 Score=1283.70 Aligned_cols=526 Identities=37% Similarity=0.703 Sum_probs=461.7
Q ss_pred CCcCCCCCCCCCCCCccccccCCCcccHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHhCcccccHHHHHHHH
Q 044890 17 PLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAM 96 (557)
Q Consensus 17 ~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~L 96 (557)
+..||++|||||+|||+||+++++.+..+.+.+++++||++||+|+.++.| ++++|+|||+||||||+|||++||+++|
T Consensus 32 ~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~~~d-~~~~l~lID~lqrLGi~~hFe~EI~~~L 110 (569)
T 2j5c_A 32 DRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVD-SIRRLELIDDLRRLGISCHFEREIVEIL 110 (569)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred cccCCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence 457999999999999999998766666667899999999999999988778 9999999999999999999999999999
Q ss_pred Hhhh-cCC--CCCchhhHHHHHHHhhhcCccccccc-----cCCC-CcccccchhhHHHHHHHhhcCCCCCCchHHHHHH
Q 044890 97 NILK-GDA--TIKDLNATSLHFRLLREHGHPVSTGT-----KRDG-RFHDNLREDIEGLLNLFEASFLGIEGEDVLEEAN 167 (557)
Q Consensus 97 ~~i~-~~~--~~~dl~~~al~FRlLR~~Gy~vS~dv-----~~~g-~F~~~l~~dv~gll~LyeAs~l~~~gE~iLdea~ 167 (557)
++|- ... ...||++|||+|||||||||+||||| |++| +|++++.+||+|||||||||||++|||+|||||+
T Consensus 111 ~~i~~~~~~~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~ 190 (569)
T 2j5c_A 111 NSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLAR 190 (569)
T ss_dssp HHHTTSSCCSCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHH
T ss_pred HHHHHhccCcccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9993 322 35799999999999999999999999 7889 9999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhcCCCC-CcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCCCCHHHHHHHHhhhHHHHHhhHHHHHH
Q 044890 168 IFCTEHLKESLGTLGS-KIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKE 246 (557)
Q Consensus 168 ~ft~~~L~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~ 246 (557)
+||++||++++.+ + +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++
T Consensus 191 ~Ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~ 268 (569)
T 2j5c_A 191 DFATKFLQKRVLV--DKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKE 268 (569)
T ss_dssp HHHHHTTSSCC------CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--cCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999998876 5 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhccc
Q 044890 247 LARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIG 326 (557)
Q Consensus 247 lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~~ 326 (557)
++|||+++||.+++||||||++|||||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||++
T Consensus 269 l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~ 348 (569)
T 2j5c_A 269 ASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIE 348 (569)
T ss_dssp HHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCcc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchh
Q 044890 327 AVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSP 406 (557)
Q Consensus 327 ~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~ 406 (557)
+ +++||+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||++|.+|+|++
T Consensus 349 ~-~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~ 427 (569)
T 2j5c_A 349 S-MKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGI 427 (569)
T ss_dssp G-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCH
T ss_pred c-cccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHH
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCCCHHHHH
Q 044890 407 AAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEAR 486 (557)
Q Consensus 407 ~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~EeA~ 486 (557)
+++++++++| |..+|+++++|+. ++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+
T Consensus 428 ~l~~~~~~~~----g~~lt~e~~e~l~---~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~ 500 (569)
T 2j5c_A 428 PILSHLFFRL----TDSIEEEAAESMH---KYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAR 500 (569)
T ss_dssp HHHHHHHHHS----CSSCCHHHHHHHT---TTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHhh---ccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHH
Confidence 9999999999 9999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-c-CCCCCCchhHHHHHHhhhhcCcc
Q 044890 487 DRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-G-DGIGTSTGVSRDRLVSLILEPIP 554 (557)
Q Consensus 487 ~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~-D~~t~~~~~~k~~i~~l~~~pi~ 554 (557)
++++++|+++||+||++|++ +++|++|+++++|++|+++++|+ + ||||.|+..+|++|++||++|||
T Consensus 501 ~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 501 EHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999999999999999999 89999999999999999999999 9 99999977899999999999997
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=7.2e-140 Score=1188.32 Aligned_cols=496 Identities=32% Similarity=0.559 Sum_probs=462.5
Q ss_pred HHHHHHHHHHHHHHhhh-----cchhhhhhhhHHHHHHHhCcccccHHHHHHHHHhh-hcC---------C-CCCchhhH
Q 044890 48 ANRLDELKQKAKDLFAS-----AKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNIL-KGD---------A-TIKDLNAT 111 (557)
Q Consensus 48 ~~~~~~lk~~v~~~l~~-----~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i-~~~---------~-~~~dl~~~ 111 (557)
.++.++|...|++.-++ +.| ++++||+||+||||||+|||++||+++|+++ ... . ...||++|
T Consensus 221 ~~~~~YL~~~~~~~~g~VP~~yP~d-~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~t 299 (764)
T 3p5p_A 221 EKCFTFLNNLLDKFGGCVPCMYSID-LLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTT 299 (764)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCCCH-HHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHH
Confidence 46778888888876443 267 9999999999999999999999999999999 321 1 14699999
Q ss_pred HHHHHHhhhcCccccccc-----cCCCCcccc---cchhhHHHHHHHhhcCCCCCCchHHHHHHHHhHHHHHHHhcC-CC
Q 044890 112 SLHFRLLREHGHPVSTGT-----KRDGRFHDN---LREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGT-LG 182 (557)
Q Consensus 112 al~FRlLR~~Gy~vS~dv-----~~~g~F~~~---l~~dv~gll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-~~ 182 (557)
||+|||||||||+||||| |++|+|+++ +.+|++|||||||||||+||||+|||||++||++||++.+.+ +.
T Consensus 300 Al~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~ 379 (764)
T 3p5p_A 300 ALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKIS 379 (764)
T ss_dssp HHHHHHHHHTTCCCCGGGGGGGBCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCccHhHHHhhhcCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999 688999874 589999999999999999999999999999999999998763 23
Q ss_pred CCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCC------------CCHHHHHHHHhhhHHHHHhhHHHHHHHHHH
Q 044890 183 SKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDE------------SGPILLTLAKLDYNLVQSIHQQELKELARW 250 (557)
Q Consensus 183 ~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrW 250 (557)
++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||++++||
T Consensus 380 ~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rW 459 (764)
T 3p5p_A 380 TNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRW 459 (764)
T ss_dssp SSSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhcCchhccchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhcee
Confidence 67899999999999999999999999999999998865 499999999999999999999999999999
Q ss_pred HhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhccccccc
Q 044890 251 WSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLE 330 (557)
Q Consensus 251 wk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~~~~~~ 330 (557)
||++|| .++||||||++|||||++| |||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||+++ ++
T Consensus 460 wk~~~l-~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~-~~ 535 (764)
T 3p5p_A 460 WKESGM-ADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSL-LH 535 (764)
T ss_dssp HHHTST-TTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTT-GG
T ss_pred HHhcCC-CcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchh-hh
Confidence 999999 6999999999999999999 9999999999999999999999999999999999999999999999999 99
Q ss_pred cCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHH
Q 044890 331 ELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIV 410 (557)
Q Consensus 331 ~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~ 410 (557)
+||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++
T Consensus 536 ~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~ 615 (764)
T 3p5p_A 536 EIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTL 615 (764)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhc-CCCHHHHHHHH
Q 044890 411 HAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEE-GISEEEARDRI 489 (557)
Q Consensus 411 ~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~-gvS~EeA~~~i 489 (557)
.+++++ |+.+|+++++|+. .+|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|+|++++
T Consensus 616 ~~~~~~----G~~lt~e~~e~~~---~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i 688 (764)
T 3p5p_A 616 QPILLM----GELVKDDVVEKVH---YPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHI 688 (764)
T ss_dssp HHHHTS----SSCCCGGGHHHHS---TTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHc----CCCCcHHHHhhhh---hhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHH
Confidence 888889 9999999999996 559999999999999999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHhhccc-CCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCchhHHHHHHhhhhcCccC
Q 044890 490 KSLIIYSWKKLNGKNLY-KSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEPIPV 555 (557)
Q Consensus 490 ~~~i~~~wk~ln~e~l~-~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~~~k~~i~~l~~~pi~~ 555 (557)
+++|+++||+||++|++ ++++|++|+++++|++|++++||+ +||||.|+..||++|++||++||++
T Consensus 689 ~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 689 CRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 99999999999999997 778999999999999999999999 9999998777999999999999986
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.3e-139 Score=1189.13 Aligned_cols=496 Identities=33% Similarity=0.572 Sum_probs=465.6
Q ss_pred HHHHHHHHHHHHHHhhh-----cchhhhhhhhHHHHHHHhCcccccHHHHHHHHHhh-hc---C-------CCCCchhhH
Q 044890 48 ANRLDELKQKAKDLFAS-----AKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNIL-KG---D-------ATIKDLNAT 111 (557)
Q Consensus 48 ~~~~~~lk~~v~~~l~~-----~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i-~~---~-------~~~~dl~~~ 111 (557)
.++.++|...|++.-++ +.| ++++||+||+||||||+|||++||+++|+++ .. . ....||++|
T Consensus 245 ~~~~~YL~~~~~~~~g~VP~~yP~d-~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~t 323 (785)
T 3s9v_A 245 KKCLDFLNFVLKKFGNHVPCHYPLD-LFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDT 323 (785)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCCH-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHH
Confidence 46778888888776443 257 9999999999999999999999999999999 32 1 114699999
Q ss_pred HHHHHHhhhcCccccccc-----cCCCCccccc---chhhHHHHHHHhhcCCCCCCchHHHHHHHHhHHHHHHHhcCC--
Q 044890 112 SLHFRLLREHGHPVSTGT-----KRDGRFHDNL---REDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTL-- 181 (557)
Q Consensus 112 al~FRlLR~~Gy~vS~dv-----~~~g~F~~~l---~~dv~gll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~-- 181 (557)
||+|||||||||+||||| |++|+|++++ .+|++|||||||||||+||||+|||||++||++||++.+.++
T Consensus 324 Al~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~ 403 (785)
T 3s9v_A 324 AMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDA 403 (785)
T ss_dssp HHHHHHHHHTTCCCCGGGGGGGBCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999 6889999866 699999999999999999999999999999999999987542
Q ss_pred ----CCCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCC------------CCHHHHHHHHhhhHHHHHhhHHHHH
Q 044890 182 ----GSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDE------------SGPILLTLAKLDYNLVQSIHQQELK 245 (557)
Q Consensus 182 ----~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~ 245 (557)
.++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||+
T Consensus 404 ~d~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 483 (785)
T 3s9v_A 404 FDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQ 483 (785)
T ss_dssp TCTTCSSSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHhCCccccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999998875 4999999999999999999999999
Q ss_pred HHHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhcc
Q 044890 246 ELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEI 325 (557)
Q Consensus 246 ~lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~ 325 (557)
+++||||++|| .++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||+
T Consensus 484 ~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~ 562 (785)
T 3s9v_A 484 DLRRWWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDL 562 (785)
T ss_dssp HHHHHHHHTTT-TSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSS
T ss_pred HHhHHHHHcCC-CcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCc
Confidence 99999999999 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccch
Q 044890 326 GAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGS 405 (557)
Q Consensus 326 ~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~ 405 (557)
++ +++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||++|+|+
T Consensus 563 ~~-~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~ 641 (785)
T 3s9v_A 563 SL-VDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIAL 641 (785)
T ss_dssp SS-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCH
T ss_pred hh-hhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhc-CCCHHH
Q 044890 406 PAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEE-GISEEE 484 (557)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~-gvS~Ee 484 (557)
++++++++++| |+.+|+|+++|+. .+|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|+
T Consensus 642 ~~l~~~~~~~~----G~~lt~e~~e~~~---~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEe 714 (785)
T 3s9v_A 642 GTVVLISALFT----GEVLTDEVLSKID---RESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEE 714 (785)
T ss_dssp HHHHHHHTTCS----SSCCCHHHHTTTS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHhccc---ccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHH
Confidence 99999999999 9999999999996 559999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCch-hHHHHHHhhhhcCcc
Q 044890 485 ARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTG-VSRDRLVSLILEPIP 554 (557)
Q Consensus 485 A~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~-~~k~~i~~l~~~pi~ 554 (557)
|+++++++|+++||+||++|++++ +|++|+++++|++|++++||+ +||||.|+. .||++|++||++||.
T Consensus 715 A~~~i~~~Ie~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 715 ALQHVYSVMENALEELNREFVNNK-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999999999999999987 999999999999999999999 999999965 799999999999983
No 9
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.1e-139 Score=1193.78 Aligned_cols=500 Identities=36% Similarity=0.628 Sum_probs=461.2
Q ss_pred HHHHHHHHHHHHHHhhh-----cchhhhhhhhHHHHHHHhCcccccHHHHHHHHHhh-hc--C-------C-CCCchhhH
Q 044890 48 ANRLDELKQKAKDLFAS-----AKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNIL-KG--D-------A-TIKDLNAT 111 (557)
Q Consensus 48 ~~~~~~lk~~v~~~l~~-----~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i-~~--~-------~-~~~dl~~~ 111 (557)
.++.++|...|++.-++ +.| ++++|++||+||||||+|||++||+++|+++ .. . . ...||++|
T Consensus 273 ~~~~~YL~~~~~~~~g~VP~~yP~d-~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~t 351 (817)
T 3sdr_A 273 AKCLEFLNSVMIKFGNFVPCLYPVD-LLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETT 351 (817)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCCH-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCccCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHH
Confidence 46778888888876433 267 9999999999999999999999999999999 31 1 1 14699999
Q ss_pred HHHHHHhhhcCccccccc-----cCCCCccccc---chhhHHHHHHHhhcCCCCCCchHHHHHHHHhHHHHHHHhcCCC-
Q 044890 112 SLHFRLLREHGHPVSTGT-----KRDGRFHDNL---REDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLG- 182 (557)
Q Consensus 112 al~FRlLR~~Gy~vS~dv-----~~~g~F~~~l---~~dv~gll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~- 182 (557)
||+|||||||||+||||| |++|+|++++ .+|++|||||||||||+||||+|||||+.||++||++.+.++.
T Consensus 352 Al~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~ 431 (817)
T 3sdr_A 352 ALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSET 431 (817)
T ss_dssp HHHHHHHHHTTCCCCGGGGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHcCCCccHhHHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999 6889999865 6999999999999999999999999999999999999876421
Q ss_pred -----CCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCC------------CCHHHHHHHHhhhHHHHHhhHHHHH
Q 044890 183 -----SKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDE------------SGPILLTLAKLDYNLVQSIHQQELK 245 (557)
Q Consensus 183 -----~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~ 245 (557)
++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||+
T Consensus 432 ~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 511 (817)
T 3sdr_A 432 SSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMK 511 (817)
T ss_dssp GSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhh
Confidence 24779999999999999999999999999999998875 4999999999999999999999999
Q ss_pred HHHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhcc
Q 044890 246 ELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEI 325 (557)
Q Consensus 246 ~lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~ 325 (557)
+++||||++|| .++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||+
T Consensus 512 ~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~ 590 (817)
T 3sdr_A 512 NVTSWFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDL 590 (817)
T ss_dssp HHHHHHHHSSG-GGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCG
T ss_pred hhceeHHhcCC-CcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCc
Confidence 99999999999 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccch
Q 044890 326 GAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGS 405 (557)
Q Consensus 326 ~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~ 405 (557)
++ +++||+|||+||.+|+++++|++.++.++||+++++|++++|++++++|++||+|+++||+||+||||+||++|+|+
T Consensus 591 ~~-~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~ 669 (817)
T 3sdr_A 591 SF-TENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQ 669 (817)
T ss_dssp GG-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCH
T ss_pred hh-hhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccc
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhc-CCCHH
Q 044890 406 PA-AIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEE-GISEE 483 (557)
Q Consensus 406 ~~-~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~-gvS~E 483 (557)
++ +++++++++ |+.+|+|+++|+. .+++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|
T Consensus 670 ~~ll~~~~~~~~----g~~lt~e~~e~~~-~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~E 744 (817)
T 3sdr_A 670 RILLLSGVLIMD----GQLLSQEALEKVD-YPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEE 744 (817)
T ss_dssp HHHHHHHHTTCT----TCCCCHHHHHTTC-CTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHH
T ss_pred cHHHHHHHHHHc----CCCCCHHHHhccc-ccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHH
Confidence 88 777777888 9999999999983 11234999999999999999999999999999999999999999 79999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCchhHHHHHHhhhhcCccC
Q 044890 484 EARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEPIPV 555 (557)
Q Consensus 484 eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~~~k~~i~~l~~~pi~~ 555 (557)
+|+++++++|+++||+||++|++++++|++|+++++|++|++++||+ +||||.|+..||++|++||++||++
T Consensus 745 eA~~~i~~~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 745 EALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999889999999999999999999999 9999999778999999999999985
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.1e-105 Score=900.70 Aligned_cols=443 Identities=22% Similarity=0.335 Sum_probs=388.1
Q ss_pred HHHHHHHHHHHHHHhhhc-----chhhhhhhhHHHHHHHhCcccccHHHHHHHHHhh-hc---CC-------CCCchhhH
Q 044890 48 ANRLDELKQKAKDLFASA-----KESTSELLKLTDSVQKLGVAYHFEEEIKEAMNIL-KG---DA-------TIKDLNAT 111 (557)
Q Consensus 48 ~~~~~~lk~~v~~~l~~~-----~d~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i-~~---~~-------~~~dl~~~ 111 (557)
.++.++|+..|+++.++. .| ++++||+||+||||||+|||++||+++|+++ .. .+ ...||++|
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d-~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~t 298 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVD-LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDT 298 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCH-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHH
Confidence 578899999999987652 68 9999999999999999999999999999999 32 11 13699999
Q ss_pred HHHHHHhhhcCccccccc----cCCCCcccc---cchhhHHHHHHHhhcCCCCCCchHHHHHHHHhHHHHHHHhcCCC--
Q 044890 112 SLHFRLLREHGHPVSTGT----KRDGRFHDN---LREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLG-- 182 (557)
Q Consensus 112 al~FRlLR~~Gy~vS~dv----~~~g~F~~~---l~~dv~gll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~-- 182 (557)
||+|||||||||+||||| .++|+|++. ..+|++|||+|||||||++|||+|||||+.||++||++.+..+.
T Consensus 299 AL~FRLLRqhGy~VS~DvF~~Fk~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 378 (727)
T 3pya_A 299 AMAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELI 378 (727)
T ss_dssp HHHHHHHHHTTCCCCGGGGGGGEETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCCCCCHHHHHhccCCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999 567999843 36899999999999999999999999999999999999875432
Q ss_pred ----CCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCC-------------CCHHHHHHHHhhhHHHHHhhHHHHH
Q 044890 183 ----SKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDE-------------SGPILLTLAKLDYNLVQSIHQQELK 245 (557)
Q Consensus 183 ----~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~ 245 (557)
++++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||||||+||++||+||+
T Consensus 379 dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 458 (727)
T 3pya_A 379 DKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458 (727)
T ss_dssp CSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHh
Confidence 25789999999999999999999999999999997655 6999999999999999999999999
Q ss_pred HHHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhcc
Q 044890 246 ELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEI 325 (557)
Q Consensus 246 ~lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~ 325 (557)
+++||||++|| .++||||||++|||||++|++|||+||.+|+++||++++++++||+||+|| |||+.||+||+|||.
T Consensus 459 ~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~ 535 (727)
T 3pya_A 459 IFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIA 535 (727)
T ss_dssp HHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-
T ss_pred hhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhccc
Confidence 99999999999 679999999999999999999999999999999999999999999999999 999999999999997
Q ss_pred c---------ccccc---CChh--HHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044890 326 G---------AVLEE---LPEY--MQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPT 391 (557)
Q Consensus 326 ~---------~~~~~---LPey--mk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt 391 (557)
. + .+. +|+| ||+||.||+|++||++.++.+.||+++++|++++|.++++++++||+ +
T Consensus 536 ~~~~~~~~~~~-~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~------- 606 (727)
T 3pya_A 536 NARRSDHHFND-RNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E------- 606 (727)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C-------
T ss_pred ccccccccccc-hhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c-------
Confidence 4 3 333 2877 99999999999999999999999999999999999999999999997 2
Q ss_pred HHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHH
Q 044890 392 AKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSI 471 (557)
Q Consensus 392 ~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V 471 (557)
+| |. +++..+..+ +|..+++ ++.++ .|..|.++++.||||+||+.+|++|+
T Consensus 607 -~E---------Ae--llv~~I~l~---sG~~l~e-~l~~~----ey~~L~~ltn~icrllndl~~~~~E~--------- 657 (727)
T 3pya_A 607 -GE---------GE--LMVKMIILM---KNNDLTN-FFTHT----HFVRLAEIINRICLPRQYLKARRNDE--------- 657 (727)
T ss_dssp -CH---------HH--HHHHHHHHH---SSSCGGG-GGSSH----HHHHHHHHHHHHSCCCC------CHH---------
T ss_pred -cc---------ee--eeeeeeecC---CCcchHh-hccCh----hHHHHHHHHHHHhHHHhHHHHHHHHH---------
Confidence 33 22 333333333 3777888 77776 59999999999999999999999977
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhcccCC--CCcHHHHHHHHHHhhhhhhhcccCCCCCCchhHHHHHHhhh
Q 044890 472 QCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKS--DFPESMAKMCLDMSRTAHCIFHGDGIGTSTGVSRDRLVSLI 549 (557)
Q Consensus 472 ~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~--~~p~~~~~~~ln~aR~~~~~Y~~D~~t~~~~~~k~~i~~l~ 549 (557)
++++.+.|+..|+++++.++.++ .+|++| |++++++.||.. ||++| + |+.+|.++|
T Consensus 658 --------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~-ay~~p-~-i~~hI~kVl 715 (727)
T 3pya_A 658 --------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF-ALCGD-H-LQTHISKVL 715 (727)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH-HHHTT-S-CHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh-hcCCH-H-HHHHHHHHH
Confidence 55899999999999999999754 799999 999999999985 99988 4 999999999
Q ss_pred hcCcc
Q 044890 550 LEPIP 554 (557)
Q Consensus 550 ~~pi~ 554 (557)
++|+-
T Consensus 716 ~~~~~ 720 (727)
T 3pya_A 716 FQKVG 720 (727)
T ss_dssp HSCCC
T ss_pred cCccc
Confidence 99984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.3e-51 Score=429.18 Aligned_cols=251 Identities=14% Similarity=0.114 Sum_probs=228.6
Q ss_pred HHhhHHHHHHHH-HHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhh-hhhhHHHHHhhhhcccccC--CCHHH
Q 044890 237 QSIHQQELKELA-RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRI-GLTKFVCILTAIDDIYDVY--GSIDE 312 (557)
Q Consensus 237 Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~fD~y--gt~eE 312 (557)
.+.|.+|+++.+ +||+++|+.+ .||+|+|++++|||.++++|+|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 345677887766 6999999965 59999999999999999999999999999 8999999999999999998 69999
Q ss_pred HHHHHHHHHhhccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C
Q 044890 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTP-T 391 (557)
Q Consensus 313 l~~ft~ai~rWd~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vP-t 391 (557)
++.|++++.+|+.+. +|+|+++++.++.+++++++.. .++....++++.|++|++++++||+|+.+|++| |
T Consensus 94 ~~~~~~~l~~~~~~~----~p~~~~~~~~~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s 165 (337)
T 1ps1_A 94 TKQLTDQVAAALDGP----LPDTAPPIAHGFADIWRRTCEG----MTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDS 165 (337)
T ss_dssp HHHHHHHHHGGGTSC----CCTTSCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHHHcCCC----CCCCCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999998654 7999999999999999998654 355677999999999999999999999999999 9
Q ss_pred HHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHH
Q 044890 392 AKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSI 471 (557)
Q Consensus 392 ~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V 471 (557)
++||+++|++|+|++++++++++++ |..+|+++++++ .+++|+++++.++||+|||+||++|+++|+++|+|
T Consensus 166 ~eEYl~~r~~s~g~~~~~~~~~~~~----g~~l~~~~~~~p----~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V 237 (337)
T 1ps1_A 166 AAQYLAMRRHTIGVQPTVDLAERAG----RFEVPHRVFDSA----VMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMV 237 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH----TCCCCHHHHTSH----HHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHH
T ss_pred HHHHHHHcccccchhhHHHHHHHHc----CCCCCHHHHhCh----HHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHH
Confidence 9999999999999999999999999 999999998877 58899999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 044890 472 QCYMIEEGISEEEARDRIKSLIIYSWKKLNGKN 504 (557)
Q Consensus 472 ~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 504 (557)
.|||+++|+|+|+|++++.++|+++||+||+..
T Consensus 238 ~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 238 MILRREHGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=8.1e-49 Score=401.30 Aligned_cols=242 Identities=10% Similarity=0.029 Sum_probs=222.5
Q ss_pred hhHHHHHHHH-HHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhh-hhhhHHHHHhhhhcccccCCCHHHHHHH
Q 044890 239 IHQQELKELA-RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRI-GLTKFVCILTAIDDIYDVYGSIDELELF 316 (557)
Q Consensus 239 ~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~fD~ygt~eEl~~f 316 (557)
-|.+|+++.+ +||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 4677888777 577999996 569999999999999999999999999999 899999999999999999 789999999
Q ss_pred HHHHHhhccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHh
Q 044890 317 TEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYI 396 (557)
Q Consensus 317 t~ai~rWd~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl 396 (557)
++++.||+.+ +.+|+||+++++++++++++++..+ + .+.++.|+.++++|+ ||+|+..|++||++||+
T Consensus 91 ~~~~~~~~~~---~~lp~~~~~~~~~l~d~~~~~~~~~-~-------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 91 NNRLIPISRG---DVLPDRTKPEEFILYDLWESMRAHD-A-------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHT---SSCCCTTCHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHccC---CCCCCCccHHHHHHHHHHHHHHhhC-h-------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 9999999874 3589999999999999999998765 2 356777999999997 89999999999999999
Q ss_pred hhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCC--------Cc
Q 044890 397 ENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGD--------VA 468 (557)
Q Consensus 397 ~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~--------v~ 468 (557)
++|++|+|+++++++++++| |..+|+++++ .+++|+++++.++||+|||+||+||+++|+ ++
T Consensus 159 ~~r~~s~g~~~~~~~~~~~~----g~~l~~e~~~------~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~ 228 (300)
T 1di1_A 159 EYREKDVGKALLSALMRFSM----GLRLSADELQ------DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLC 228 (300)
T ss_dssp HHHHTCHHHHHHHHHHHHHH----TCCCCHHHHH------TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CC
T ss_pred HHHhhhccHHHHHHHHHHHc----CCCCCHHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccc
Confidence 99999999999999999999 9999999998 269999999999999999999999999999 78
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 044890 469 KSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKN 504 (557)
Q Consensus 469 n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 504 (557)
|+|.|||+++|+|+|+|++++.++|+++||++|+..
T Consensus 229 n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 229 SAVKVLAEESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2.7e-47 Score=394.02 Aligned_cols=244 Identities=14% Similarity=0.074 Sum_probs=220.2
Q ss_pred HHhhHHHHHHHH-HHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhh-hhhhHHHHHhhhhcccccCCCHHHHH
Q 044890 237 QSIHQQELKELA-RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRI-GLTKFVCILTAIDDIYDVYGSIDELE 314 (557)
Q Consensus 237 Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~fD~ygt~eEl~ 314 (557)
...|.+|+++.+ +||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++
T Consensus 25 ~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~ 102 (320)
T 3bny_A 25 CHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGS 102 (320)
T ss_dssp CCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHH
Confidence 345677888777 57799999765 9999999999999999999999999999 899999999999999999 8899999
Q ss_pred HHHHHHHhhccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Q 044890 315 LFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKE 394 (557)
Q Consensus 315 ~ft~ai~rWd~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eE 394 (557)
.|++++.+|+.+ +.+|+||++++.++++++++++..+ + .+.++.|+.++ ++++|++|+.+|++||++|
T Consensus 103 ~~~~~l~~~~~~---~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~ee 170 (320)
T 3bny_A 103 AYNEKLIPISRG---DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGG 170 (320)
T ss_dssp HHHHHHHHHHHT---SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHH
T ss_pred HHHHHHHHHhcC---CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHH
Confidence 999999999864 3589999999999999999998664 2 24556677777 5999999999999999999
Q ss_pred HhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCC--------
Q 044890 395 YIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGD-------- 466 (557)
Q Consensus 395 Yl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~-------- 466 (557)
|+++|++|+|++++++++++++ |..+|+++++. +++|+++++.++||+|||+||+||+++|+
T Consensus 171 Yl~~r~~s~g~~~~~~~~~~~~----g~~l~~e~~~~------~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~ 240 (320)
T 3bny_A 171 YLEYRERDVGKELLAALMRFSM----GLKLSPSELQR------VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGI 240 (320)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH----TCCCCHHHHHH------THHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHhhhcccHHHHHHHHHHHc----CCCCCHHHHHH------HHHHHHHHHHHHHHhcccchhHHHHHhhccccccccc
Confidence 9999999999999999999999 99999999982 69999999999999999999999999998
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 044890 467 VAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKN 504 (557)
Q Consensus 467 v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 504 (557)
++|+|.|||+++|+|+|+|++++.+++++.|+++|+..
T Consensus 241 ~~N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 241 LCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp CCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=1.3e-45 Score=391.53 Aligned_cols=243 Identities=9% Similarity=0.004 Sum_probs=222.9
Q ss_pred HHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhh-hhhhHHHHHhhhhccccc--CC-CHHHHHHHHHHHHh
Q 044890 247 LARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRI-GLTKFVCILTAIDDIYDV--YG-SIDELELFTEAVKR 322 (557)
Q Consensus 247 lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~fD~--yg-t~eEl~~ft~ai~r 322 (557)
+.+||+++|+.. -+++|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.+
T Consensus 66 ~~~W~~~~gl~~-~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 66 TRTWLLEKRLMP-ADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHTTSSC-HHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 457999999964 48899999999999999999999999999 999999999999999996 66 99999999999988
Q ss_pred hccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccc
Q 044890 323 WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVS 402 (557)
Q Consensus 323 Wd~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~S 402 (557)
+-. . ...+|++++++++++.+++++++..+ ++....+++++|++++++|++||+|+.+|++||++|||++|++|
T Consensus 145 ~l~-~-~~~~p~~~~p~~~al~dl~~~~~~~~----~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s 218 (382)
T 3kb9_A 145 ALD-S-PGDHLHHEDTLVAGFADSVRRLYAFL----PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLT 218 (382)
T ss_dssp HHH-S-CGGGTTCSSHHHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred Hhc-C-CCCCCCCCChHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Confidence 521 2 22368899999999999999986543 33457899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCCCH
Q 044890 403 VGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISE 482 (557)
Q Consensus 403 sG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~ 482 (557)
+|++++++++++++ |..+|+++++++ .+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+
T Consensus 219 ~g~~~~~~l~~~~~----g~~l~~~~~~~p----~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~ 290 (382)
T 3kb9_A 219 FAHWIWTDLLEPSS----GCELPDAVRKHP----AYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTL 290 (382)
T ss_dssp TTHHHHHHHHHHHH----TCCCCHHHHTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCH
T ss_pred cCHHHHHHHHHHHc----CCCCCHHHHhCh----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCH
Confidence 99999999999999 999999999987 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 044890 483 EEARDRIKSLIIYSWKKLNGKN 504 (557)
Q Consensus 483 EeA~~~i~~~i~~~wk~ln~e~ 504 (557)
|+|++++.++|+++||+||+..
T Consensus 291 eeA~~~v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 291 EEAIGEVRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999843
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.98 E-value=3.7e-32 Score=291.90 Aligned_cols=247 Identities=14% Similarity=0.073 Sum_probs=184.4
Q ss_pred HHHHHH-HHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCc-chhhh-hhhhHHHHHhhhhccc-ccCC-CHHHH-HH
Q 044890 242 QELKEL-ARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQF-SKCRI-GLTKFVCILTAIDDIY-DVYG-SIDEL-EL 315 (557)
Q Consensus 242 ~El~~l-srWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~-s~~Rl-~~aK~~~l~~iiDD~f-D~yg-t~eEl-~~ 315 (557)
+|++.- ..|.+++++... +-.|+++..+-|-.++.+..|.. +.+|+ .++|+++|+|++||.| |..| +.+.+ ..
T Consensus 129 ~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~ 207 (433)
T 3v1v_A 129 EEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGR 207 (433)
T ss_dssp HHHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHH
Confidence 355543 469999876433 33577777774444444445999 79999 8899999999999994 9755 33321 12
Q ss_pred HHH---HHHhhccccccccCCh-----hHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044890 316 FTE---AVKRWEIGAVLEELPE-----YMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKG 387 (557)
Q Consensus 316 ft~---ai~rWd~~~~~~~LPe-----ymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g 387 (557)
+.. ++..... . .+.-|. .-..+..+++++++++...+.+ ....++++.|++|+++|++||+|+.+|
T Consensus 208 l~~a~~~~d~l~~-~-~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g 281 (433)
T 3v1v_A 208 LLLAHTAIDHFHS-T-AEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTG 281 (433)
T ss_dssp HHHHHTTTSCCCC-C-TTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhc-c-cCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222 1111100 0 110010 0124578899999999755433 457899999999999999999999999
Q ss_pred CCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcC-C
Q 044890 388 YTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRG-D 466 (557)
Q Consensus 388 ~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG-~ 466 (557)
++||+||||++|++|++.+++ +...+++ |..+|+++++++ .+++|+++++.++||+|||+||+||+++| +
T Consensus 282 ~vPsleEYl~~R~~sg~~p~~-~l~e~~~----g~~lp~~v~~~p----~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~ 352 (433)
T 3v1v_A 282 HVPEVWEYLAMRQFNNFRPCP-TITDTVG----GYELPADLHARP----DMQRVIALAGNATTIVNDLYSYTKELNSPGR 352 (433)
T ss_dssp CCCCHHHHHHHHHHSSSTTTG-GGHHHHH----TCCCCHHHHTSH----HHHHHHHHHHHHHHHHHHHHSHHHHTTSSSC
T ss_pred CCCCHHHHHHHHHHHhHHHHH-HHHHHHc----CCCCCHHHHhCc----hHHHHHHHHHHHHHHhchHHHHHHHHhcCCC
Confidence 999999999999999444444 4455668 999999999987 58999999999999999999999999995 7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 044890 467 VAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKN 504 (557)
Q Consensus 467 v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 504 (557)
++|+|.|||+++|+|+|+|++++.+|+++.++++.+..
T Consensus 353 ~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 353 HLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999988754
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.74 E-value=1.6e-17 Score=175.12 Aligned_cols=229 Identities=13% Similarity=0.039 Sum_probs=171.2
Q ss_pred HHHHHHhhhC------------CccchhHHHhhHHHHHHHHhccccCCCcchhhh-hhhhHHHHHhhhhcccccCCCHHH
Q 044890 246 ELARWWSNLG------------FKEKLSFARDRLMENYLLVMGLCFKAQFSKCRI-GLTKFVCILTAIDDIYDVYGSIDE 312 (557)
Q Consensus 246 ~lsrWwk~~~------------l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~fD~ygt~eE 312 (557)
+..+|..+.| +. .-|-..++++.+=.|.++..| |..+.+.+ .++++.+|+|++||++|..+ ++
T Consensus 34 ~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~ 109 (374)
T 1yyq_A 34 ENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PT 109 (374)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HH
T ss_pred HHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HH
Confidence 4447888888 53 123356677777667666555 99999988 88999999999999999654 66
Q ss_pred HHHHHHHHHhhccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Q 044890 313 LELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTA 392 (557)
Q Consensus 313 l~~ft~ai~rWd~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~ 392 (557)
+..|.+.+.+ ... . + .++..++.+.+.++ ....++.+..++.++|.+++.++..|+.. .|..|+.
T Consensus 110 l~~~~~~ll~--G~~-~---~---~Pl~~al~dl~~rl----~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~ 174 (374)
T 1yyq_A 110 MVNYFDDLQA--GRE-Q---A---HPWWALVNEHFPNV----LRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGS 174 (374)
T ss_dssp HTTHHHHHHH--TCC-C---S---SHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTC
T ss_pred HHHHHHHHhc--CCC-C---C---ChHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCH
Confidence 7777777653 222 1 1 14556666666655 45556778899999999999999999873 7778999
Q ss_pred HHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhh-cCCCchHH
Q 044890 393 KEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELK-RGDVAKSI 471 (557)
Q Consensus 393 eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~-rG~v~n~V 471 (557)
++|...++.++|..-.. . +..+|+..+......|.+...+.....++.|+|||.||.||.. .|+.+|+|
T Consensus 175 ~~Y~~~rR~~sG~~E~~----~------~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV 244 (374)
T 1yyq_A 175 HDYPQFLRRMNGLGHCV----G------ASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLV 244 (374)
T ss_dssp TTHHHHHHHHHHCHHHH----H------HTTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHH
T ss_pred HHHHHHHHhhccHHHHH----H------HhhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchh
Confidence 99999988888874221 1 2245555441111000255667777779999999999999998 49999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 044890 472 QCYMIEEGISEEEARDRIKSLIIYSWKKLNGK 503 (557)
Q Consensus 472 ~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e 503 (557)
.+++.++|+|.++|++++..++..+..++-..
T Consensus 245 ~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 245 KNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhehhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888653
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.44 E-value=3.9e-05 Score=88.00 Aligned_cols=57 Identities=32% Similarity=0.585 Sum_probs=31.4
Q ss_pred CccccCCC-CCCCcCCCCCCCCCCCCccccccCCCcccHHHHHHHHHHHHHHHHHHhh
Q 044890 7 SIVACNGS-NDPLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFA 63 (557)
Q Consensus 7 ~~~~~~~~-~~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 63 (557)
+.++|..+ .+++.||+|||+||+|+++||+++++++..+.+.+++++|+++||+|+.
T Consensus 11 ~~~~~~~~~~~~~~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 11 SSLVCDLSSTSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp ------------------------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCccCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhc
Confidence 44555544 4467899999999999999999988888778899999999999999996
No 18
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=84.76 E-value=28 Score=34.61 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=95.1
Q ss_pred hhhhhhhHHHHHhhhhcccccCCC--HHHHHHHHHHHHh-hccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccch
Q 044890 286 CRIGLTKFVCILTAIDDIYDVYGS--IDELELFTEAVKR-WEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNT 362 (557)
Q Consensus 286 ~Rl~~aK~~~l~~iiDD~fD~ygt--~eEl~~ft~ai~r-Wd~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~ 362 (557)
.|-.+.-+-.|.=.+||+-|.... ...|+.+-+.+.+ .... |. .+++.+|.+++.+.. ..
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~------~~--~pv~~al~~~~~~~~--------l~- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE------AT--TPAFRALQFTIATCN--------LP- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC------CC--SHHHHHHHHHHHHHT--------CC-
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC------CC--CHHHHHHHHHHHHcC--------CC-
Confidence 344444556667788999996432 3345555555543 1111 11 257777777666541 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHH
Q 044890 363 LSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMI 442 (557)
Q Consensus 363 ~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~ 442 (557)
++.+.+++.++..... ....+|++|+......+.|.--.++...+ |.. +++.... .
T Consensus 103 ----~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~------g~~-~~~~~~~----------A 158 (294)
T 4hd1_A 103 ----MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF------GCL-DDERARL----------S 158 (294)
T ss_dssp ----SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT------TCC-SHHHHHH----------H
T ss_pred ----HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh------CCC-CHHHHHH----------H
Confidence 2335566777754433 34578999888888777775433333323 322 2332221 1
Q ss_pred HHHHHHHHHhcCccchhhhhhcCCC--chHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHhhcccCCCCc
Q 044890 443 YWSSLISRLSNDLGNSAVELKRGDV--AKSIQCYMIEEGISEEEA---------RDRIKSLIIYSWKKLNGKNLYKSDFP 511 (557)
Q Consensus 443 ~~~~~i~RL~NDI~S~~~E~~rG~v--~n~V~cyMke~gvS~EeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p 511 (557)
...+...-|.|=+.......++|-+ +. -.|.++|+|.++- ..-+..+++.+..-+.+..--...+|
T Consensus 159 ~~lG~AlQltNilRDv~eD~~~gR~YlP~---~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp 235 (294)
T 4hd1_A 159 DATCTALQVANHMQDIDRDLALGRIYVPR---ADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVP 235 (294)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSC
T ss_pred HHHHHHHHHHHHHHhchhhhccCceeCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2223333333333333344556654 43 3578899998752 22344444444433333322223577
Q ss_pred HHHH
Q 044890 512 ESMA 515 (557)
Q Consensus 512 ~~~~ 515 (557)
..+.
T Consensus 236 ~~~r 239 (294)
T 4hd1_A 236 PRLA 239 (294)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=83.55 E-value=13 Score=38.30 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhH
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDE 440 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~ 440 (557)
..+..+.+.+..++.+-..+..|...+ ||.++|++.-..-+|..+..+. .+|. ..+| .+++..+. ...
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~-~lga-~lag--a~~~~~~~------l~~ 227 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAG-YLGA-MHAG--AAPEHIDA------LKN 227 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHH-HHHH-HHTT--CCHHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHH-HHHH-HHcC--CCHHHHHH------HHH
Confidence 466788888999999999999997765 9999999987776666543332 2332 1123 45555443 357
Q ss_pred HHHHHHHHHHHhcCccchhhh-----------hhcCCCchHHHHHHHhc
Q 044890 441 MIYWSSLISRLSNDLGNSAVE-----------LKRGDVAKSIQCYMIEE 478 (557)
Q Consensus 441 i~~~~~~i~RL~NDI~S~~~E-----------~~rG~v~n~V~cyMke~ 478 (557)
+-+..++..-+.||+..+.-. ...|. .++..+|.-+.
T Consensus 228 ~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK-~Tlp~l~al~~ 275 (360)
T 3lmd_A 228 FGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGV-FTLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------CCHHHHHTC-CCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCC-chHHHHHHHHc
Confidence 778888889999999777432 22333 36666666544
No 20
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=82.11 E-value=21 Score=35.40 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=98.0
Q ss_pred hhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHh-hcccccc-ccCChhHHHHHHHHHHhHHHHHHHHHHHcccch
Q 044890 285 KCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKR-WEIGAVL-EELPEYMQICYLAMFNFGNELAYDVMKIHGLNT 362 (557)
Q Consensus 285 ~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~r-Wd~~~~~-~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~ 362 (557)
..|-.+.-+-.|.-.+||+=|......+|+.+-+.+++ .+..... ...|+ .++..+|.+++.+. +.
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~l-- 105 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------NI-- 105 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------CC--
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------CC--
Confidence 45666667777888899999976554446666666654 1111100 00022 35677777665543 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHH
Q 044890 363 LSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMI 442 (557)
Q Consensus 363 ~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~ 442 (557)
-++.+.+++.++- .+......+|++|+......+.|.-..+++-.+ |..-.++..+ ..
T Consensus 106 ---~~~~~~~li~g~~---~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~------g~~~~~~~~~----------~A 163 (293)
T 3acx_A 106 ---AFQSFYNLIDTVY---KDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL------SDHETHQTYD----------VA 163 (293)
T ss_dssp ---CHHHHHHHHHHHH---HHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH------CSSCCHHHHH----------HH
T ss_pred ---CHHHHHHHHHHHH---HHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh------CCCCcHHHHH----------HH
Confidence 1244566677774 334455678999999988888886444444333 4221122222 22
Q ss_pred HHHHHHHHHhcCccchhhhhhcCCC--chHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHhh
Q 044890 443 YWSSLISRLSNDLGNSAVELKRGDV--AKSIQCYMIEEGISEEE---------ARDRIKSLIIYSWKKLNGK 503 (557)
Q Consensus 443 ~~~~~i~RL~NDI~S~~~E~~rG~v--~n~V~cyMke~gvS~Ee---------A~~~i~~~i~~~wk~ln~e 503 (557)
...+...-|.|=+........+|-+ +. =-|.++|++.++ ..+-+..++..+..-+.+.
T Consensus 164 ~~lG~AlQltNilRDv~eD~~~gR~YLP~---d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a 232 (293)
T 3acx_A 164 RRLGESLQLINILRDVGEDFENERIYFSK---QRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDV 232 (293)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTCCCSCH---HHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeCH---HHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333322223334456654 33 246789999876 2244556666666555543
No 21
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=78.06 E-value=20 Score=35.86 Aligned_cols=128 Identities=12% Similarity=0.077 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhH
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDE 440 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~ 440 (557)
..+..+.++...++.+-..+..|... .||.++|++.-..-+|.-+..+ +.+|. ..+| .+++..+. ...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga-~lag--~~~~~~~~------l~~ 194 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGA-YTGG--AEEELAER------FSH 194 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHH
Confidence 45566677777888888888888654 4899999988766666644332 22332 1123 35555443 357
Q ss_pred HHHHHHHHHHHhcCccchhhhhh-----cCCCchHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHH
Q 044890 441 MIYWSSLISRLSNDLGNSAVELK-----RGDVAKSIQCYMIEEGI--SEEEARDRIKSLIIYSWKKLN 501 (557)
Q Consensus 441 i~~~~~~i~RL~NDI~S~~~E~~-----rG~v~n~V~cyMke~gv--S~EeA~~~i~~~i~~~wk~ln 501 (557)
+-+..++..-+.||+..+....+ .|. .++..+|..+.+- ..+.|.+.+.+.++++.+.+.
T Consensus 195 ~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~ 261 (295)
T 3ipi_A 195 FGNALGTAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE 261 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999988754332 232 3666677654421 145566666666666665554
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=75.87 E-value=25 Score=35.73 Aligned_cols=90 Identities=9% Similarity=0.029 Sum_probs=61.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChh
Q 044890 360 LNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYD 439 (557)
Q Consensus 360 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p 439 (557)
...+..+.+....++.+-..+..|.. ...||.++|++.-..-+|..+..+. .+|. ..+| .+++..+. ..
T Consensus 132 ~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga-~lag--~~~~~~~~------l~ 200 (334)
T 3rmg_A 132 YEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACA-EAAA-LSVQ--VGEEEVAF------AR 200 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHH-HHHH-HHTT--CCHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHH-HHHH-HHcC--CCHHHHHH------HH
Confidence 35667788888999999999998864 3458999999987777776543332 2332 1123 35555443 45
Q ss_pred HHHHHHHHHHHHhcCccchhh
Q 044890 440 EMIYWSSLISRLSNDLGNSAV 460 (557)
Q Consensus 440 ~i~~~~~~i~RL~NDI~S~~~ 460 (557)
.+-...++..-+.||+..+..
T Consensus 201 ~~g~~lG~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 201 LLGEYIGICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 778888899999999988753
No 23
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=73.37 E-value=46 Score=34.01 Aligned_cols=90 Identities=8% Similarity=0.006 Sum_probs=61.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChh
Q 044890 360 LNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYD 439 (557)
Q Consensus 360 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p 439 (557)
...+..+.++...++.+-+.+..|.. +..||.++|++.-..-+|..+..+ +.+|. ..+| .+++..+. ..
T Consensus 150 ~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga-~lag--~~~~~~~~------l~ 218 (345)
T 3oyr_A 150 MKALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGA-VSAG--VDVAKSEA------LR 218 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHH-HHcC--CCHHHHHH------HH
Confidence 34667788888889999999988854 345899999998777777654333 23332 1223 35555443 45
Q ss_pred HHHHHHHHHHHHhcCccchhh
Q 044890 440 EMIYWSSLISRLSNDLGNSAV 460 (557)
Q Consensus 440 ~i~~~~~~i~RL~NDI~S~~~ 460 (557)
.+-+..++..-+.||+..+.-
T Consensus 219 ~~g~~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 219 DYGLNLGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 778888999999999988753
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=71.12 E-value=73 Score=32.36 Aligned_cols=89 Identities=7% Similarity=0.028 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChh
Q 044890 360 LNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYD 439 (557)
Q Consensus 360 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p 439 (557)
...+..+.+....++.+-+.+..|.. +..||.++|++.-..-+|..+..+ +.+|. ..+| .+++..+. ..
T Consensus 138 ~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga-~lag--~~~~~~~~------l~ 206 (341)
T 3mzv_A 138 MRVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGG-IIGG--APEDQVQA------LF 206 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHH-HHcC--CCHHHHHH------HH
Confidence 34566777888889999999988864 346899999998776666644332 22332 1123 35554443 35
Q ss_pred HHHHHHHHHHHHhcCccchh
Q 044890 440 EMIYWSSLISRLSNDLGNSA 459 (557)
Q Consensus 440 ~i~~~~~~i~RL~NDI~S~~ 459 (557)
.+-...++..-+.||+..+.
T Consensus 207 ~~g~~lG~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 207 DYGDALGIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 67788888899999987764
No 25
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=69.00 E-value=52 Score=32.62 Aligned_cols=123 Identities=7% Similarity=-0.001 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhH
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDE 440 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~ 440 (557)
..+..+.++...++.+-..+..|......||.++|++.-..-+|..+..+. .+|. ..+| .+++ . ..+
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~-~~ga-~lag--~~~~---~------l~~ 200 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCF-SAPF-ILXG--XDHT---X------MXL 200 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHH-HHHH-HHHT--CCCH---H------HHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHH-HHHH-HHhC--CChh---H------HHH
Confidence 355667777788999999999997655578999999987776665433322 2322 1113 2333 1 356
Q ss_pred HHHHHHHHHHHhcCccchhhhh-hcCC-------CchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 441 MIYWSSLISRLSNDLGNSAVEL-KRGD-------VAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 441 i~~~~~~i~RL~NDI~S~~~E~-~rG~-------v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
+-...++..-+.||+..+.-.. .-|. -.+...+| ..|.|.+.+.+.++.+.+.++.
T Consensus 201 ~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 201 LGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7788889999999998886533 2232 12333333 3688999999999999988776
No 26
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=67.95 E-value=23 Score=35.49 Aligned_cols=113 Identities=6% Similarity=0.031 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
..++.+-..+..|... .+|.++|++.-..-+|..+..+. .+|. ..+| .+++..+. ..++-...++..-
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga-~lag--~~~~~~~~------l~~~g~~lG~aFQ 215 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAV-MSAA-DIAN--VDDTTKEH------LESYSYHLGMMFQ 215 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHH-HHHH-HHHT--CCHHHHHH------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHH-HHHH-HHcC--CCHHHHHH------HHHHHHHHHHHHH
Confidence 5577777778877543 78999999987777776433332 2322 1123 45665553 3577888899999
Q ss_pred HhcCccchhhhh-----------hcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 451 LSNDLGNSAVEL-----------KRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 451 L~NDI~S~~~E~-----------~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
+.||+..+.-.. ..|. .+...+|- .+.|.+.+.+.++.+.+.+..
T Consensus 216 I~DDilD~~~d~~~~GK~~g~Dl~~gK-~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 216 IKDDLLDCYGDEAKLGKKVGSDLENNK-STYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHHHHHHCC--------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHhCCCcchHHHcCC-CcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 999998875432 1222 25555543 578888999999988877765
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=66.50 E-value=33 Score=34.43 Aligned_cols=113 Identities=10% Similarity=0.006 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
..++.+-..+..|.. ..||.++|...-..-+|..+..+ +.+|. ..+| .+++..+. ..++-...++..-
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~-~~~ga-~lag--a~~~~~~~------l~~~g~~lGlaFQ 223 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFA-LIAGG-VLAN--QTEEVIGL------LTQFAHHYGLAFQ 223 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHHHHHHHHHHHH
Confidence 345667777777754 47899999998555455433222 22332 1123 35555443 4577788888899
Q ss_pred HhcCccchhhh-----------hhcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 451 LSNDLGNSAVE-----------LKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 451 L~NDI~S~~~E-----------~~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
+.||+..+.-. ...|.. ++..+| ..+.|.+.+.+.++++.+.++.
T Consensus 224 I~DDilD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 224 IRDDLLDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHHHHHHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999776432 222322 444444 5789999999999999988775
No 28
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=65.99 E-value=25 Score=35.23 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
..++.+-..+..|...+..||.++|+..-..-+|..+..+ +.+|. ..+| .+++ . ..++-...++..-
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~-~~~ga-~lag--~~~~---~------l~~~g~~lG~aFQ 213 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFA-AQAGA-ILAG--ADRG---P------LTAYATALGLAFQ 213 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHHT--CCCH---H------HHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHH-HHHHH-HHcC--CCHH---H------HHHHHHHHHHHHH
Confidence 4577788888888766778999999998665555543322 22332 1113 2333 1 3567788889999
Q ss_pred HhcCccchhhhh-hcCC-----C----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 451 LSNDLGNSAVEL-KRGD-----V----AKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 451 L~NDI~S~~~E~-~rG~-----v----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
+.||+..+.-.. .-|. . .+++.+| ..|.|.+...+.++.+.+.++.
T Consensus 214 I~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 214 IADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp HHTTCC---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999998875432 1121 1 2555444 3577888899999988877654
No 29
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=64.93 E-value=39 Score=34.22 Aligned_cols=113 Identities=8% Similarity=0.055 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
..++.+-..+..|... .||.++|+..-..-+|..+..+ +.+|. ..+| ..+++..+. ..++-+..++..-
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga-~lag-~a~~~~~~~------l~~~g~~lGlAFQ 226 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLAC-LARP-GLPAEQFDR------LDHYAKCIGLAFQ 226 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHH-TTST-TCCHHHHHH------HHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHH-HHcC-CCCHHHHHH------HHHHHHHHHHHHH
Confidence 4567777777777553 7899999998655555543322 33433 1122 145555543 3567788888899
Q ss_pred HhcCccchhhh-----------hhcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 044890 451 LSNDLGNSAVE-----------LKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLN 501 (557)
Q Consensus 451 L~NDI~S~~~E-----------~~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 501 (557)
+.||+..+.-. ...|. .+++.+| ..|.|.+...+.++++...+.
T Consensus 227 I~DDiLD~~~d~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 227 IQDDILDEESDTQTLGKTRGKDRDHNK-PNYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHHHHHHTCC---------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999776432 12232 2555555 578899999998888876554
No 30
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=62.87 E-value=66 Score=32.67 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhH
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDE 440 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~ 440 (557)
.++..+.+....++.+-..+..|... ..+|.++|++.-..-+|..+..+. .+|. ..+| .+++..+. ..+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~-~~ga-~lag--~~~~~~~~------l~~ 221 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSC-KAVA-VLTG--QTAEVAVL------AFE 221 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHH-HHHH-HTTT--CCHHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHH-HHHH-HHcC--cCHHHHHH------HHH
Confidence 45667778888889998888777542 357999999986666665443332 2332 1223 34554443 356
Q ss_pred HHHHHHHHHHHhcCccchhh
Q 044890 441 MIYWSSLISRLSNDLGNSAV 460 (557)
Q Consensus 441 i~~~~~~i~RL~NDI~S~~~ 460 (557)
+-...++..-+.||+..+.-
T Consensus 222 ~g~~lG~aFQi~DD~lD~~g 241 (348)
T 3apz_A 222 YGRNLGLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 77888888999999988754
No 31
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=61.26 E-value=1.4e+02 Score=30.14 Aligned_cols=105 Identities=9% Similarity=-0.013 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhH
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDE 440 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~ 440 (557)
..+..+.+....++.+-+.+..|.. +..||.++|++.-..-+|..+..+ +.+|. ..+| .+++..+. ...
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga-~lag--~~~~~~~~------l~~ 211 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGA-QLAG--APQSVIDR------TRD 211 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHH
Confidence 3456677788888888888888754 356899999987666566543322 23332 1223 35555443 356
Q ss_pred HHHHHHHHHHHhcCccchhh-----------hhhcCCCchHHHHHHHh
Q 044890 441 MIYWSSLISRLSNDLGNSAV-----------ELKRGDVAKSIQCYMIE 477 (557)
Q Consensus 441 i~~~~~~i~RL~NDI~S~~~-----------E~~rG~v~n~V~cyMke 477 (557)
+-...++..-+.||+..+.- ....|.. ++..+|.-+
T Consensus 212 ~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 212 IGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 77778888888898876642 2334544 666666554
No 32
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=61.14 E-value=46 Score=34.16 Aligned_cols=88 Identities=9% Similarity=-0.016 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHh
Q 044890 362 TLSYIKKEWENLCTSYLVEARWFS----------KGY-TPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLS 430 (557)
Q Consensus 362 ~~~~lk~~w~~~~~a~l~EAkW~~----------~g~-vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e 430 (557)
.+..+.++...++.+-..+..|.. .+. .||.++|++.-..-+|..+..+. .+|. ..+| .+++..+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga-~lag--~~~~~~~ 208 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGV-LSVS--DDRGLAE 208 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHH-HHHC--CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHH-HHcC--CCHHHHH
Confidence 556778888899999999999973 223 67999999987776666543332 2332 1113 3555444
Q ss_pred hhhhccChhHHHHHHHHHHHHhcCccchh
Q 044890 431 CLKVEHGYDEMIYWSSLISRLSNDLGNSA 459 (557)
Q Consensus 431 ~~~~~~~~p~i~~~~~~i~RL~NDI~S~~ 459 (557)
. ...+-...++..-+.||+..+-
T Consensus 209 ~------l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 209 A------AWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHHHHHHHhc
Confidence 3 3567788888889999987764
No 33
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=61.05 E-value=30 Score=34.69 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
..++.+-..+..|. +..||.++|+..-..-+|..+..+ +.+|. ..+| ..+++..+ ...++-...++..-
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga-~lag-~~~~~~~~------~l~~~g~~lG~aFQ 226 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGA-LAAG-EKGRAMLP------HLDRYAEAVGLAFQ 226 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHH-HTTT-HHHHTTHH------HHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHH-HHcC-CCCHHHHH------HHHHHHHHHHHHHH
Confidence 45677888888886 457899999998655555543322 22332 1112 12333333 24567788888899
Q ss_pred HhcCccchhhhh-----------hcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 451 LSNDLGNSAVEL-----------KRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 451 L~NDI~S~~~E~-----------~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
+.||+..+.-+. ..|. .+...+| ..+.|.+.+.+.++++.+.++.
T Consensus 227 I~DDilD~~~~~~~~GK~~g~Dl~egK-~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 227 VQDDILDIISDTETLGKPQGSDQELNK-STYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHHHHHHTTC---------------C-CCHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCHHHhCCCcchHHhcCC-chHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999997774332 2222 2555555 3688999999999999877764
No 34
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=60.43 E-value=39 Score=34.18 Aligned_cols=113 Identities=10% Similarity=0.036 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHH
Q 044890 372 NLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRL 451 (557)
Q Consensus 372 ~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL 451 (557)
.++.+-..+..|. +..||.++|+..-..-+|.-+..+ +.+|. ..+| ..+++..+. ..++-+..++..-+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga-~lag-~a~~~~~~~------l~~~g~~lGlAFQI 220 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGA-LSTG-QVKPEQLAK------LDAYAHAIGLAFQV 220 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHH-HTTT-CCCHHHHHH------HHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHH-HHcC-CCCHHHHHH------HHHHHHHHHHHHHH
Confidence 4667777777775 345999999998655555543322 22332 1122 245555543 35677888888999
Q ss_pred hcCccchhhhh-----------hcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 452 SNDLGNSAVEL-----------KRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 452 ~NDI~S~~~E~-----------~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
.||+..+.-.. ..|. .++..+| ..|.|.+.+.+.++++.+.++.
T Consensus 221 ~DDiLD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 221 QDDIIDLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHHHHHTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99997764321 2232 3666555 4688999999999999887764
No 35
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=60.30 E-value=36 Score=34.70 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
..++.+-..+..|... .+|.++|++.-..-+|..+..+. .+|. ..+| .+++..+. ..++-...++..-
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~-~~Ga-~lag--a~~~~~~~------l~~~g~~lGlAFQ 259 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFAC-EAGA-IIAG--SNQAERQR------LRLFGEKIGLSFQ 259 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHH-HHHH-HHHT--CCHHHHHH------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHH-HHHH-HHhC--CCHHHHHH------HHHHHHHHHHHHH
Confidence 5577777778888664 78999999987777776533322 2322 1123 45555553 3577888899999
Q ss_pred HhcCccchhhhh-----------hcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 451 LSNDLGNSAVEL-----------KRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 451 L~NDI~S~~~E~-----------~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
+.||+..+.-.. ..|. .++..+| ..|.|.+.+.+.++.+.+.+..
T Consensus 260 I~DDiLD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 260 LADDLLDLTADAATMGKATGKDAARGK-GTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHHHHHHC-----------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHhcCCHHHhCCCcchHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999998774322 1222 2555444 3688999999999999877654
No 36
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=59.86 E-value=36 Score=34.14 Aligned_cols=112 Identities=8% Similarity=0.010 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHh
Q 044890 373 LCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLS 452 (557)
Q Consensus 373 ~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~ 452 (557)
++.+-..+..|... .||.++|...-..-+|..+..+ +.+|. ..+|. .+++..+. ..++-...++..-+.
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga-~lag~-~~~~~~~~------l~~~g~~lGlaFQI~ 222 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGA-LASGR-AEKGELKA------LQTYAQAIGLAFQVQ 222 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTTC-CCHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHH-HHcCC-CCHHHHHH------HHHHHHHHHHHHHHH
Confidence 66777777777553 4899999998555555433322 22332 11231 15555543 357778888999999
Q ss_pred cCccchhhhh-hcCC-----C----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 044890 453 NDLGNSAVEL-KRGD-----V----AKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLN 501 (557)
Q Consensus 453 NDI~S~~~E~-~rG~-----v----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 501 (557)
||+..+.-.. .-|. . .+++.+| ..|.|.+.+.+.++++.+.++
T Consensus 223 DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 223 DDILDVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9998875432 1222 1 2555554 578899999999998887654
No 37
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=55.61 E-value=51 Score=33.40 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHH
Q 044890 362 TLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEM 441 (557)
Q Consensus 362 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i 441 (557)
.+..+.++...++.+-..+..|.... ..|.++|++.-..-+|..+..+ +.+|. ..+| .+++..+. ..++
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~-~~~ga-~lag--~~~~~~~~------l~~~ 206 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEAS-AKVGG-IIGT--DNEEYIKA------LSSW 206 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHHC--CCHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHHH
Confidence 55667777888999999999997643 4599999998777777654333 22332 1123 35555543 3577
Q ss_pred HHHHHHHHHHhcCccchh
Q 044890 442 IYWSSLISRLSNDLGNSA 459 (557)
Q Consensus 442 ~~~~~~i~RL~NDI~S~~ 459 (557)
-...++..-+.||+..+.
T Consensus 207 g~~lG~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 207 GRNVGIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 888899999999998774
No 38
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=53.22 E-value=50 Score=33.27 Aligned_cols=114 Identities=10% Similarity=0.105 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
..++.+-..+..|... ..||.++|...-..-+|..+..+.....+ +|...+++..+. ..++-...++..-
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~l---ag~~a~~~~~~~------l~~~g~~lGlaFQ 227 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLA---AQHEVSEQIKSA------LRTYGKHIGLVFQ 227 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHT---TCSSCCHHHHHH------HHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCCHHHHHH------HHHHHHHHHHHHH
Confidence 3567777777777543 37899999998655555433333222222 232156665553 3577888888899
Q ss_pred HhcCccchhhhh-----------hcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 044890 451 LSNDLGNSAVEL-----------KRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLN 501 (557)
Q Consensus 451 L~NDI~S~~~E~-----------~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 501 (557)
+.||+..+.-.. ..|. .+++.+| ..+.|.+.+.+.++++.+.+.
T Consensus 228 I~DDilD~~gd~~~~GK~~g~Dl~~gK-~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 228 MQDDYLDLYAPTQILGKGRSSDQANQK-TTFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHHHHHHCC---------------C-CCHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccCCHHhhCCCCcchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 999998775332 2222 2444443 578899999999988886654
No 39
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=52.76 E-value=84 Score=31.52 Aligned_cols=112 Identities=10% Similarity=-0.024 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHH
Q 044890 372 NLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRL 451 (557)
Q Consensus 372 ~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL 451 (557)
.++.+-..+..|. +..||.++|...-..-+|..+..+ +.+|. ..+| .+++..+. ..++-...++..-+
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~ga-~lag--a~~~~~~~------l~~~g~~lGlaFQI 223 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYA-VQAGL-ILGQ--APEAQWPA------YLQFADAFGLAFQI 223 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCGGGHHH------HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHHHHHHHHHHHHH
Confidence 4556666666764 346899999998555555433322 22332 1223 34554443 35677888888999
Q ss_pred hcCccchhhh-----------hhcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 452 SNDLGNSAVE-----------LKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 452 ~NDI~S~~~E-----------~~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
.||+..+.-. ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 224 ~DDiLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 224 YDDILDVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHHHHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 9999777432 222322 555444 4678888899999988877764
No 40
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=52.27 E-value=71 Score=32.32 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
..++.+-..+..|... ..||.++|...-..-+|..+..+ +.+|. ..+| .+++..+. ..++-...++..-
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga-~lag--a~~~~~~~------l~~~g~~lGlAFQ 248 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGA-VLAE--ASEGDIKK------LEGFGYKLGLAFQ 248 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHHHHHHHHHHHH
Confidence 4567788888887543 36899999998555455433222 22332 1123 35555443 4577788888899
Q ss_pred HhcCccchhhh-----------hhcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 451 LSNDLGNSAVE-----------LKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 451 L~NDI~S~~~E-----------~~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
+.||+..+.-. ...|. .+...+| ..+.|.+.+.+.++++.+.+..
T Consensus 249 I~DDiLD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 249 IKDDILDVVGNAKDLGKNVHKDQESNK-NNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHHHHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCHHHhCCCcchHhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999776432 12222 2444444 4689999999999999988765
No 41
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=50.10 E-value=83 Score=31.26 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhc-CCCCCChhHHhhhhhccChhHHHHHHHHHH
Q 044890 371 ENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQ-GSNDLTENSLSCLKVEHGYDEMIYWSSLIS 449 (557)
Q Consensus 371 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~ 449 (557)
..++.+-..+..|... .+|.++|+..-..-+|..+..+ +.+|. .. +| .+++..+. ..++-...++..
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga-~l~ag--~~~~~~~~------l~~~g~~lG~aF 219 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGA-LSAGD--KGRRALPV------LDKYAESIGLAF 219 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHH-HTTTH--HHHHHHHH------HHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHH-HHhCC--CCHHHHHH------HHHHHHHHHHHH
Confidence 4567777778887543 7899999998766666543332 23333 11 12 34444443 457778888889
Q ss_pred HHhcCccchhhhh-hcCC---------CchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 450 RLSNDLGNSAVEL-KRGD---------VAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 450 RL~NDI~S~~~E~-~rG~---------v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
-+.||+..+.-.. .-|. -.+...+| ..+.|.+.+.+.++.+.+.++.
T Consensus 220 Qi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 220 QVQDDILDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998775432 1222 12544444 3577888899999999888766
No 42
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=44.88 E-value=1.4e+02 Score=30.77 Aligned_cols=91 Identities=5% Similarity=-0.048 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC-----------------------CCCCHHHHhhhcccccchhHHHHHHHHHHHh
Q 044890 362 TLSYIKKEWENLCTSYLVEARWFSKG-----------------------YTPTAKEYIENAWVSVGSPAAIVHAYILLQL 418 (557)
Q Consensus 362 ~~~~lk~~w~~~~~a~l~EAkW~~~g-----------------------~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~ 418 (557)
.+..+.++...++.+-..+..|.... ..+|+++|++.-..=+|...+.+...+|+ .
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga-~ 257 (395)
T 3mav_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGM-L 257 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHH-H
Confidence 44556666667777777777665432 23589999998666666543222222333 1
Q ss_pred cCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchh
Q 044890 419 QGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSA 459 (557)
Q Consensus 419 ~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~ 459 (557)
.+|...+++..+. ...+-...++..-+.||+..+-
T Consensus 258 ~ag~~~d~~~~~~------l~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 258 LAGIAVDNLIYKK------IEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp HTTCCTTCTHHHH------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCcchhHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 2244444444443 3567777888889999987653
No 43
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=44.79 E-value=1.1e+02 Score=31.08 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHH
Q 044890 362 TLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEM 441 (557)
Q Consensus 362 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i 441 (557)
.+..+.+....++.+-..+..|... ..||.++|++.-..-+|..+..+ +.+|. ..+| .+++..+. ...+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga-~lag--~~~~~~~~------l~~~ 212 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGA-VLGG--ADERTADT------LEKY 212 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHHH
Confidence 4566778888999999999998654 37899999998777667654333 23332 1223 35555543 3577
Q ss_pred HHHHHHHHHHhcCccchh
Q 044890 442 IYWSSLISRLSNDLGNSA 459 (557)
Q Consensus 442 ~~~~~~i~RL~NDI~S~~ 459 (557)
-+..++..-+.||+..+-
T Consensus 213 g~~lG~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 213 GYHLGLAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 888888999999997764
No 44
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=44.64 E-value=1.9e+02 Score=28.67 Aligned_cols=115 Identities=10% Similarity=-0.013 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHH
Q 044890 370 WENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLIS 449 (557)
Q Consensus 370 w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~ 449 (557)
...++.+-..+..|.. ..||.++|...-..-+|..+..+. .+|. ..+| .+++..+. ..++-+..++..
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a~-~~ga-~lag--a~~~~~~~------l~~~g~~lGlaF 211 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAAL-KMGC-EICE--LNNEESNQ------IYKLGLKLGLIF 211 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHH-HHHH-HHTT--CCHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHHH-HHHH-HHcC--CCHHHHHH------HHHHHHHHHHHH
Confidence 4456666666677643 578999999986555555433222 2332 1122 45554443 467788888899
Q ss_pred HHhcCccchhhhh-hcCCC-------chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 450 RLSNDLGNSAVEL-KRGDV-------AKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 450 RL~NDI~S~~~E~-~rG~v-------~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
-+.||+..+.-.. ..|.. .+.+.++ ..+.|.+...++++++.+.++.
T Consensus 212 QI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 212 QINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHHHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 9999998775432 22332 1333222 4678888888888888877663
No 45
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=44.38 E-value=73 Score=25.34 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcchhhhhhhhHHHHHHHhCcccccHHHHHHHHHhh-hcC-CC--CCchhhHHHHHHHhh-hcCcccc
Q 044890 52 DELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNIL-KGD-AT--IKDLNATSLHFRLLR-EHGHPVS 126 (557)
Q Consensus 52 ~~lk~~v~~~l~~~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i-~~~-~~--~~dl~~~al~FRlLR-~~Gy~vS 126 (557)
+++++..+.+-...+- ....=++...+.++|++ ++|++++++.+ .++ +. ..+. ..+|.-.-.+ +.|+.++
T Consensus 10 ~~~~~~F~~~D~d~dG-~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~d~dG~i~~~EF-~~~~~~~~~~~~~g~~lP 84 (95)
T 1c07_A 10 AKYDEIFLKTDKDMDG-FVSGLEVREIFLKTGLP---STLLAHIWSLCDTKDCGKLSKDQF-ALAFHLISQKLIKGIDPP 84 (95)
T ss_dssp HHHHHHHHHHCTTCSS-EECHHHHHHHHHTTTCC---HHHHHHHHHHHCTTCSSSEETTTH-HHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHhCCCCCC-cEeHHHHHHHHHHcCCC---HHHHHHHHHHHCCCCCCcCCHHHH-HHHHHHHHHHHHcCCCCC
Confidence 3454544433222222 33444567778889976 78899988877 222 21 2333 3334333334 7899887
Q ss_pred ccc
Q 044890 127 TGT 129 (557)
Q Consensus 127 ~dv 129 (557)
..+
T Consensus 85 ~~l 87 (95)
T 1c07_A 85 HVL 87 (95)
T ss_dssp SSC
T ss_pred CcC
Confidence 643
No 46
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=44.13 E-value=2.2e+02 Score=28.37 Aligned_cols=103 Identities=9% Similarity=0.003 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhH
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDE 440 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~ 440 (557)
.....+.+....++.+-+.+..|.. +..||.++|++.-..-+|..+..+ +.+|. ..+|.. .+ ....
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga-~lag~~-----~~------~l~~ 187 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEAS-LKSMA-ILLNKD-----AK------IYAD 187 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTTSC-----HH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHH-HHHHH-HHcCCC-----HH------HHHH
Confidence 4556677788889999999999865 346899999987666666544333 23333 122432 12 2456
Q ss_pred HHHHHHHHHHHhcCccchhhh-----------hhcCCCchHHHHHHHhc
Q 044890 441 MIYWSSLISRLSNDLGNSAVE-----------LKRGDVAKSIQCYMIEE 478 (557)
Q Consensus 441 i~~~~~~i~RL~NDI~S~~~E-----------~~rG~v~n~V~cyMke~ 478 (557)
+-...++..-+.||+..+--. ...|. .++..+|.-+.
T Consensus 188 ~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK-~T~p~i~al~~ 235 (315)
T 3tc1_A 188 FGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGK-TTLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTC-CCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCC-hhHHHHHHHHh
Confidence 778888888999998776432 12233 36666666655
No 47
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=43.36 E-value=82 Score=31.62 Aligned_cols=116 Identities=8% Similarity=0.016 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHH-hhhhhccChhHHHHHHHHH
Q 044890 370 WENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSL-SCLKVEHGYDEMIYWSSLI 448 (557)
Q Consensus 370 w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~-e~~~~~~~~p~i~~~~~~i 448 (557)
...++.+-..+..|. +..||.++|+..-..-+|..+..+. .+|. ..+| .+++.. +. ...+-...+..
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~lga-~lag--a~~~~~~~~------l~~~g~~lGla 225 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASL-IMGL-VASG--IKDEELFKW------LQAFGLKMGLC 225 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHH-HHHC--CCCHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHH-HHHH-HHcC--CCHHHHHHH------HHHHHHHHHHH
Confidence 345667777777775 5678999999886555555433222 2222 1113 344444 43 35777888888
Q ss_pred HHHhcCccchhhh-hhcCCCchHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHHHHh
Q 044890 449 SRLSNDLGNSAVE-LKRGDVAKSIQCYMIEEGI------SEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 449 ~RL~NDI~S~~~E-~~rG~v~n~V~cyMke~gv------S~EeA~~~i~~~i~~~wk~ln~ 502 (557)
.-+.||+..+.-. ..-|+.... ++... ..|.|....+++++++.+.+..
T Consensus 226 FQI~DDiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 226 FQVLDDIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999887543 223433211 22222 4688888899999988877653
No 48
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=42.44 E-value=1.4e+02 Score=30.08 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCHHHHhhhcccccchh-HHHHHHHHHHHhcCCCCCChhHHhhhhhccCh
Q 044890 361 NTLSYIKKEWENLCTSYLVEARW-FSKGYTPTAKEYIENAWVSVGSP-AAIVHAYILLQLQGSNDLTENSLSCLKVEHGY 438 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW-~~~g~vPt~eEYl~~~~~SsG~~-~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~ 438 (557)
..+..+.+....++.+-+.+..| ...+..||.++|++.-..-+|.. +..+ +.+|. ..+|. +++.. +
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~-~~~ga-~lag~--~~~~~--l------ 197 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAP-LRLGA-LLAGK--TPPAA--Y------ 197 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHH-HHHHH-HHTTC--CCCHH--H------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHH-HHHHH-HHcCC--CHHHH--H------
Confidence 35567778888999999999999 65435689999999877777765 4333 23332 12232 23322 2
Q ss_pred hHHHHHHHHHHHHhcCccchh
Q 044890 439 DEMIYWSSLISRLSNDLGNSA 459 (557)
Q Consensus 439 p~i~~~~~~i~RL~NDI~S~~ 459 (557)
..+-...++..-+.||+..+.
T Consensus 198 ~~~g~~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 198 EEGGLRLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHccCccc
Confidence 356677788888888887764
No 49
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=40.83 E-value=1.1e+02 Score=30.48 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=60.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChh
Q 044890 360 LNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYD 439 (557)
Q Consensus 360 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p 439 (557)
+.....+.+.+..++.+-..+..|......||.++|++.-..-+|..+.++.. +|. ..+|. ++ ...
T Consensus 110 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~-~ga-~~a~~--~~----------~l~ 175 (301)
T 2q80_A 110 PDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVG-LMQ-LFSDY--KE----------DLK 175 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH-HHH-HTCCC--CS----------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHH-HHH-HHCCC--hH----------HHH
Confidence 34566678888899999999999987666899999999877777765433332 332 12232 21 245
Q ss_pred HHHHHHHHHHHHhcCccchh
Q 044890 440 EMIYWSSLISRLSNDLGNSA 459 (557)
Q Consensus 440 ~i~~~~~~i~RL~NDI~S~~ 459 (557)
++-...++..-+.||+..+.
T Consensus 176 ~~g~~lG~aFQi~DD~ld~~ 195 (301)
T 2q80_A 176 PLLNTLGLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 67778888889999987764
No 50
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=39.87 E-value=32 Score=34.25 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhcC-CCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHH
Q 044890 372 NLCTSYLVEARWFSKG-YTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISR 450 (557)
Q Consensus 372 ~~~~a~l~EAkW~~~g-~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~R 450 (557)
.++.+-..+..|...+ ..+|.++|+..-..-+|..+..+ +.+|. ..+| .+++..+. ..++-...++..-
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a-~~~ga-~lag--~~~~~~~~------l~~~g~~lG~aFQ 230 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEAS-AVLGG-IIGG--GSDEEIER------LRKFARCIGLLFQ 230 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHHHHHHHHHHHH
Confidence 4566666666664322 34689999988554444433222 22332 1123 35555543 3577888899999
Q ss_pred HhcCccchhhhhhcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 044890 451 LSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 451 L~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 502 (557)
+.||+..+..+. -.+...+| ..|.|.+.+.+.++.+.+.+..
T Consensus 231 I~DDiLD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 231 VVDDILDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHHHHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999998876443 34555544 5678888888888888876654
No 51
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=39.01 E-value=31 Score=35.49 Aligned_cols=92 Identities=8% Similarity=0.090 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhH
Q 044890 362 TLSYIKKEWENLCTSYLVEARWFSKGYTP-TAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDE 440 (557)
Q Consensus 362 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vP-t~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~ 440 (557)
++..+.++....+.+-..+..|...+..+ |.++|++.-..-+|+.+..+...+|+ ..+|...+++..+. ...
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~-~~ag~~~~~~~~~~------l~~ 241 (368)
T 2q58_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGL-TLSEIQVSSAQLNL------IEA 241 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHH-HHSCCCCCCSSTTT------HHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHH-HHhCcccchHHHHH------HHH
Confidence 34455566667777888888887766655 78899987555444433222222332 22355566655543 467
Q ss_pred HHHHHHHHHHHhcCccchhh
Q 044890 441 MIYWSSLISRLSNDLGNSAV 460 (557)
Q Consensus 441 i~~~~~~i~RL~NDI~S~~~ 460 (557)
+-...++..-+.||+..+-.
T Consensus 242 ~g~~lG~aFQI~DDiLD~~~ 261 (368)
T 2q58_A 242 ILYKLGEFYQVHNDVSDYLF 261 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 77888999999999977643
No 52
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=38.56 E-value=1.4e+02 Score=30.66 Aligned_cols=90 Identities=9% Similarity=0.088 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhH--HhhhhhccC
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGYTPTA-KEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENS--LSCLKVEHG 437 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~-eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev--~e~~~~~~~ 437 (557)
..+..+.++...++.+-+.+..|...|..+++ ++|+..-..-+|...+...+.+|+ ..+| .+++. .+ .
T Consensus 168 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa-~lag--~~~~~~~~~------~ 238 (368)
T 2her_A 168 KIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGL-TLSE--IQVSSAQLN------L 238 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHH-HHSC--CCCCCSSTT------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHH-HHcC--CChhHHHHH------H
Confidence 35567788888999999999998877644555 999998766666542222223333 1224 23333 33 3
Q ss_pred hhHHHHHHHHHHHHhcCccchh
Q 044890 438 YDEMIYWSSLISRLSNDLGNSA 459 (557)
Q Consensus 438 ~p~i~~~~~~i~RL~NDI~S~~ 459 (557)
...+-...++..-+.||+..+-
T Consensus 239 l~~~g~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 239 IEAILYKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888899999987775
No 53
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=33.31 E-value=84 Score=25.40 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHhCcccccHHHHHHHHHhh-hcC-C-CCCchhhHHHHHHHhhhcCccccccc
Q 044890 71 ELLKLTDSVQKLGVAYHFEEEIKEAMNIL-KGD-A-TIKDLNATSLHFRLLREHGHPVSTGT 129 (557)
Q Consensus 71 ~~l~liD~lqrLGi~~hF~~EI~~~L~~i-~~~-~-~~~dl~~~al~FRlLR~~Gy~vS~dv 129 (557)
..=++...+.++|++ ++|++++++.+ .++ + ...+=...+|.-.-+.|+|+.++.+.
T Consensus 29 s~~el~~~l~~~~l~---~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~~~~~~ 87 (99)
T 1qjt_A 29 LALDAAAFLKKSGLP---DLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSS 87 (99)
T ss_dssp CSHHHHHHHHTSSSC---HHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGGG
T ss_pred CHHHHHHHHHHcCCC---HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCCCChhh
Confidence 344566677888976 78999988887 222 2 23344566788888899999998754
No 54
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=31.10 E-value=56 Score=32.16 Aligned_cols=95 Identities=9% Similarity=0.001 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHH
Q 044890 372 NLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRL 451 (557)
Q Consensus 372 ~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL 451 (557)
.++.+-..+..|..+ .||+++|...-..-+|..+..+ +.+|. ..+| .+++..+. ..++-...++..-+
T Consensus 150 ~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a-~~lGa-ilag--a~~~~~~~------l~~~G~~lG~aFQI 217 (274)
T 3kra_B 150 GMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACG-AACGA-ILGG--AAEEEIQK------LRNFGLYQGTLRGM 217 (274)
T ss_dssp THHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHH-HHHHH-HHTT--CCHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHH-HHHHH-HHcC--CCHHHHHH------HHHHHHHHHHHHHH
Confidence 356666666666543 7999999987555555443322 22332 1123 45555543 46778888889999
Q ss_pred hcCccchhhhhhcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 044890 452 SNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLN 501 (557)
Q Consensus 452 ~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 501 (557)
.||+.. +.|++.+.+.++.+.+-+.+.
T Consensus 218 ~DD~~~-----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 218 MEMKNS-----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp HHHTTT-----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred HHhhcc-----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 999711 225555666666666665544
No 55
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=30.74 E-value=66 Score=25.37 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHhCcccccHHHHHHHHHhh-hcCCC--CCchhhHHHHHHHhhhcCccccccc
Q 044890 70 SELLKLTDSVQKLGVAYHFEEEIKEAMNIL-KGDAT--IKDLNATSLHFRLLREHGHPVSTGT 129 (557)
Q Consensus 70 ~~~l~liD~lqrLGi~~hF~~EI~~~L~~i-~~~~~--~~dl~~~al~FRlLR~~Gy~vS~dv 129 (557)
...=++...++++|++ ++|+++++..+ .+++. ..+=...+|.-.-.++.|+.++..+
T Consensus 26 I~~~el~~~l~~~g~~---~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~lp~~l 85 (92)
T 1fi6_A 26 IPGSAAKEFFTKSKLP---ILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYDLPEKL 85 (92)
T ss_dssp EEHHHHHHHHHHHSSC---HHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHHHSCCCCCCS
T ss_pred CcHHHHHHHHHHcCCC---HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccC
Confidence 3444566778889976 77888888877 22221 1122233444444568899988743
No 56
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=30.63 E-value=1.2e+02 Score=30.60 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChh
Q 044890 362 TLSYIKKEWENLCTSYLVEARWFSKG--YTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYD 439 (557)
Q Consensus 362 ~~~~lk~~w~~~~~a~l~EAkW~~~g--~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p 439 (557)
.+..+.+....++.+-..+..|.... ..||.++|++.-..-+|..+.++. .+|. ..+|. +++ .+ ...
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga-~lag~--~~~-~~------~l~ 200 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTL-RLME-ALSPS--SHH-GH------SLV 200 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHH-HHHH-HHCCC---------------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHH-HHHH-HHcCC--cHH-HH------HHH
Confidence 44566677788889999999998765 678999999987777776443332 2322 11232 221 22 356
Q ss_pred HHHHHHHHHHHHhcCccchhh
Q 044890 440 EMIYWSSLISRLSNDLGNSAV 460 (557)
Q Consensus 440 ~i~~~~~~i~RL~NDI~S~~~ 460 (557)
.+-...++..-+.||+..+.-
T Consensus 201 ~~g~~lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 201 PFINLLGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 788899999999999987743
No 57
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=30.45 E-value=2e+02 Score=29.40 Aligned_cols=91 Identities=3% Similarity=-0.153 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCHHHHhhhcccccchh-HHHHHHHHHHHhcCCCCCChhHHhhhhhc
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGY----TPTAKEYIENAWVSVGSP-AAIVHAYILLQLQGSNDLTENSLSCLKVE 435 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~----vPt~eEYl~~~~~SsG~~-~~~~~~~~~~~~~~g~~l~~ev~e~~~~~ 435 (557)
..+..+.+....++.+-+.+..|...+. .+|+++|+..-..-+|+. +..+. .+|+ ..+|. .+++..+.
T Consensus 169 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~-~~ga-~lag~-~~~~~~~~---- 241 (367)
T 1uby_A 169 HLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPV-AAAM-YMVGI-DSKEEHEN---- 241 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHH-HHHH-HHHTC-CCHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHH-HHHH-HHcCC-ccHHHHHH----
Confidence 3556777788888999999999976554 689999999877766665 32222 2222 11131 35555543
Q ss_pred cChhHHHHHHHHHHHHhcCccchhh
Q 044890 436 HGYDEMIYWSSLISRLSNDLGNSAV 460 (557)
Q Consensus 436 ~~~p~i~~~~~~i~RL~NDI~S~~~ 460 (557)
...+-...++..-+.||+..+.-
T Consensus 242 --l~~~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 242 --AKAILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcC
Confidence 35778888899999999987753
No 58
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=29.78 E-value=60 Score=23.90 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHh
Q 044890 47 YANRLDELKQKAKDLFASAKESTSELLKLTDSVQKL 82 (557)
Q Consensus 47 ~~~~~~~lk~~v~~~l~~~~d~~~~~l~liD~lqrL 82 (557)
..+++.-|.++||.-|..+.+ .++++-++.+||-|
T Consensus 14 KFEeIRwlIeE~Rh~Lk~Ten-sfeQItfmqalQLl 48 (58)
T 1pd3_A 14 KFEEIRWLIEEVRHRLKITEN-SFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHTCCCCTT-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHH
Confidence 345666788889888887778 99999999999864
No 59
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=29.14 E-value=1.3e+02 Score=30.04 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhH
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDE 440 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~ 440 (557)
..+..+.+....++.+-..+..|... ..||.++|++.-..-+|..+..+. .+|. ..+| .+++..+. ..+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~-~~ga-~lag--~~~~~~~~------l~~ 198 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASC-HLGA-LSSQ--LDEQSTYH------IKQ 198 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHH-HHHH-HTTT--CCHHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHH-HHHH-HHcC--CCHHHHHH------HHH
Confidence 35566777788899999999988653 358999999987777776543332 2332 1223 35555543 457
Q ss_pred HHHHHHHHHHHhcCccchhh
Q 044890 441 MIYWSSLISRLSNDLGNSAV 460 (557)
Q Consensus 441 i~~~~~~i~RL~NDI~S~~~ 460 (557)
+-...++..-+.||+..+.-
T Consensus 199 ~g~~lG~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 199 FGHCIGMSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 78888888999999987743
No 60
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=27.59 E-value=1.9e+02 Score=28.49 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHH
Q 044890 362 TLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEM 441 (557)
Q Consensus 362 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i 441 (557)
.+..+.++...++.+-..+..| .++|++.-..-+|..+..+. .+|. .. + .+++..+. ..++
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~-~~ga-~l-a--~~~~~~~~------l~~~ 196 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLST-VLSA-YA-S--KHYNTKQQ------MLDV 196 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHH-HHHH-HH-T--TCGGGHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHH-HHHH-HH-c--CCHHHHHH------HHHH
Confidence 5566777777777777766654 68898887666665533332 2332 01 4 45555443 3567
Q ss_pred HHHHHHHHHHhcCccchhhhhh---cCCCchHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHh
Q 044890 442 IYWSSLISRLSNDLGNSAVELK---RGDVAKSIQCYMIEEGISEEEA-RDRIKSLIIYSWKKLNG 502 (557)
Q Consensus 442 ~~~~~~i~RL~NDI~S~~~E~~---rG~v~n~V~cyMke~gvS~EeA-~~~i~~~i~~~wk~ln~ 502 (557)
-...++..-+.||+..+.-+.+ ++...+...+| . ..+.++| ...+.+.++.+.+.+..
T Consensus 197 g~~lG~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 197 GKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhhcCCCChhhhcCcccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888999999877643221 11224667667 3 2356777 45677777777766654
No 61
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=27.57 E-value=1.9e+02 Score=29.38 Aligned_cols=108 Identities=6% Similarity=-0.032 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh-----------hcCC----CCCHHHHhhhcccccchh-HHHHHHHHHHHhcCCCCC
Q 044890 361 NTLSYIKKEWENLCTSYLVEARWF-----------SKGY----TPTAKEYIENAWVSVGSP-AAIVHAYILLQLQGSNDL 424 (557)
Q Consensus 361 ~~~~~lk~~w~~~~~a~l~EAkW~-----------~~g~----vPt~eEYl~~~~~SsG~~-~~~~~~~~~~~~~~g~~l 424 (557)
..+..+.+....++.+-..+..|. ..|. .+|.++|+..-..-+|.. +..+ +.+|+ ..+| ..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~-~~~ga-~lag-~~ 227 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLP-LVMGL-FVSE-AA 227 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHH-HHHHH-HHTT-CG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHH-HHHHH-HHcC-CC
Confidence 356677778888999999999987 3233 489999999877777765 3322 22332 1123 13
Q ss_pred ChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhh----------hhcCCCchHHHHHHHhc
Q 044890 425 TENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVE----------LKRGDVAKSIQCYMIEE 478 (557)
Q Consensus 425 ~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E----------~~rG~v~n~V~cyMke~ 478 (557)
+++..+. ...+-...++..-+.||+..+.-. ...|. .++..+|.-+.
T Consensus 228 ~~~~~~~------l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK-~T~p~l~al~~ 284 (362)
T 1yhl_A 228 ASVEMNL------VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAK-CSWLAVTFLGK 284 (362)
T ss_dssp GGSCHHH------HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTC-CCHHHHHHHTT
T ss_pred CHHHHHH------HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCC-chHHHHHHHHh
Confidence 4444432 356778888889999999877532 22233 36666666554
No 62
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=26.59 E-value=5e+02 Score=26.04 Aligned_cols=214 Identities=12% Similarity=0.085 Sum_probs=102.0
Q ss_pred chhHHHhhHHH---HHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCC-CHHH----HHHHHHHHHh--hccccc
Q 044890 259 KLSFARDRLME---NYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYG-SIDE----LELFTEAVKR--WEIGAV 328 (557)
Q Consensus 259 ~l~faRdR~ve---~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~yg-t~eE----l~~ft~ai~r--Wd~~~~ 328 (557)
.+.++++-+.. +|+++.- ...| ..|-.+.-+-.|.=.+||+-|... +.++ |+.|-+.+.. |....
T Consensus 12 ~~~~C~~~l~~~srsF~la~~-lLp~---~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~- 86 (343)
T 3vj8_A 12 SLKTCYKYLNQTSRSFAAVIQ-ALDG---EMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME- 86 (343)
T ss_dssp HHHHHHHHHHHHHGGGHHHHH-TCCT---THHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC-
T ss_pred HHHHHHHHHHhcCCcHHHHHH-hCCH---HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC-
Confidence 34555553333 4554443 3323 345555667778888999999754 4443 4445544432 32211
Q ss_pred cccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHH
Q 044890 329 LEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAA 408 (557)
Q Consensus 329 ~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~ 408 (557)
.-|.. +.++..+-.+...+ ..... ....-..+....++.++. .+. ...++|++|+...-..+.|.--.
T Consensus 87 --~~~~~-~~ll~~~p~v~~~f----~~l~~-~~~~~i~~~~~~m~~gm~---~dl-~~~~~t~~~L~~Yc~~vAg~VG~ 154 (343)
T 3vj8_A 87 --SKEKD-RQVLEDFPTISLEF----RNLAE-KYQTVIADICRRMGIGMA---EFL-DKHVTSEQEWDKYCHYVAGLVGI 154 (343)
T ss_dssp --CCSTT-THHHHTHHHHHHHH----HHSCH-HHHHHHHHHHHHHHHHHH---HGG-GCCCCSHHHHHHHHHHHTHHHHH
T ss_pred --CChhh-HHHHhcCcHHHHHH----HHhHH-HHHHHHHHHHHHHHHHHH---Hhc-cCCCCCHHHHHHHHHhCcHHHHH
Confidence 11211 11111110011111 00000 011112233344445552 233 35678999998888888886544
Q ss_pred HHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCC--chHHHHHHHhcCCCHH---
Q 044890 409 IVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDV--AKSIQCYMIEEGISEE--- 483 (557)
Q Consensus 409 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v--~n~V~cyMke~gvS~E--- 483 (557)
++.-.+|. ...-++ .... ........+...-+.|=+........+|-+ +.- .|.++|++.+
T Consensus 155 l~~~l~~~----~~~~~~-~~~~------~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP~e---~l~~~g~~~~dl~ 220 (343)
T 3vj8_A 155 GLSRLFSA----SEFEDP-LVGE------DTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQE---VWSRYVKKLGDFA 220 (343)
T ss_dssp HHHHHHHH----HTSSCH-HHHH------CHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSCHH---HHTTTCSSGGGGG
T ss_pred HHHHHhCC----CCCccc-hhhh------HHHHHHHHHHHHHHHHHHHHhHHHHhCCCeeCCHH---HHHHcCCCHHHHh
Confidence 44444544 221111 1111 123344445555555555555555666754 332 4677888765
Q ss_pred ------HHHHHHHHHHHHHHHHHHhh
Q 044890 484 ------EARDRIKSLIIYSWKKLNGK 503 (557)
Q Consensus 484 ------eA~~~i~~~i~~~wk~ln~e 503 (557)
.+..-+..++..+..-+.+.
T Consensus 221 ~~~~~~~~~~~l~~l~~~A~~~~~~a 246 (343)
T 3vj8_A 221 KPENIDLAVQCLNELITNALHHIPDV 246 (343)
T ss_dssp SGGGHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666554443
No 63
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=26.36 E-value=2e+02 Score=28.46 Aligned_cols=87 Identities=13% Similarity=-0.023 Sum_probs=59.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChh
Q 044890 360 LNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYD 439 (557)
Q Consensus 360 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p 439 (557)
...+..+.++...++.+-..+..|.... ||.++|++.-..-+|..+..+. .+|. ..+|. ++ + ...
T Consensus 126 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~-~~ga-~lag~--~~---~------~l~ 190 (299)
T 1v4e_A 126 NKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLAL-QLPA-LLEGE--LG---E------DLY 190 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHH-HHHH-HHHTC--CC---H------HHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHH-HHHH-HHcCC--CH---H------HHH
Confidence 3466778888899999999999997655 9999999987776666533322 2332 11232 22 2 245
Q ss_pred HHHHHHHHHHHHhcCccchhhh
Q 044890 440 EMIYWSSLISRLSNDLGNSAVE 461 (557)
Q Consensus 440 ~i~~~~~~i~RL~NDI~S~~~E 461 (557)
.+-...++..-+.||+..+.-.
T Consensus 191 ~~g~~lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 191 NLGVTIGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHccCc
Confidence 6677888888888888776543
No 64
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=23.84 E-value=28 Score=39.68 Aligned_cols=40 Identities=23% Similarity=0.515 Sum_probs=15.3
Q ss_pred CCCCCCCCccccccCCCccc-HHHHHHHHHHHHHHHHHHhh
Q 044890 24 NYHASIWNPELIESFTTPYT-YELYANRLDELKQKAKDLFA 63 (557)
Q Consensus 24 ~~~ps~W~~~f~~~~~~~~~-~~~~~~~~~~lk~~v~~~l~ 63 (557)
+|+|++|++.++.+...+.. ...+.++++.|++++|+|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 68999999999988655443 33356788899999999984
No 65
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=20.45 E-value=2.2e+02 Score=29.27 Aligned_cols=81 Identities=6% Similarity=-0.139 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHH
Q 044890 369 EWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLI 448 (557)
Q Consensus 369 ~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i 448 (557)
....++.+-+.+..|...+ .||.++|++.-..-+|...+...+.+|. ..+| .+++..+. ...+-...++.
T Consensus 183 ~~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga-~lag--a~~~~~~~------l~~~G~~lG~A 252 (380)
T 3lk5_A 183 MRTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGA-SIAG--GSPQLIDA------LLHYGHDIGIA 252 (380)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHH-HHTT--CCHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHH-HHcC--CCHHHHHH------HHHHHHHHHHH
Confidence 3356777888888887654 5799999998666666552222223332 1123 35555543 46778888999
Q ss_pred HHHhcCccchh
Q 044890 449 SRLSNDLGNSA 459 (557)
Q Consensus 449 ~RL~NDI~S~~ 459 (557)
.-+.||+..+-
T Consensus 253 FQI~DDiLd~~ 263 (380)
T 3lk5_A 253 FQLRDDLLGVF 263 (380)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999998764
Done!