BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044891
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 75/113 (66%)
Query: 71 RMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNV 130
+++ YPPCP+P+ + GL H+D G+ +L Q ++V GLQ+ KDG WI + P ++ +VN+
Sbjct: 158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNL 217
Query: 131 GDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKA 183
GD +E+ITNGKY+S+ HR R S+ +FY D +YPA +L+ ++A
Sbjct: 218 GDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEA 270
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 56 LEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGM 115
LE+ E L M++NYYP CPQPE G+ H+D LT +L N V GLQ+ +G
Sbjct: 197 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGK 255
Query: 116 WIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVY-P 174
W+ +P++ ++++GD +EI++NGKY+SI HR VN + R+S F D V P
Sbjct: 256 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 315
Query: 175 ASSLISEKAPALFRRLTVEEYLSGR-FARE 203
++S ++PA F T +++ + F +E
Sbjct: 316 LPEMVSVESPAKFPPRTFAQHIEHKLFGKE 345
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 56 LEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGM 115
LE+ E L M++NYYP CPQPE G+ H+D LT +L N V GLQ+ +G
Sbjct: 198 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGK 256
Query: 116 WIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVY-P 174
W+ +P++ ++++GD +EI++NGKY+SI HR VN + R+S F D V P
Sbjct: 257 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 316
Query: 175 ASSLISEKAPALFRRLTVEEYLSGR-FARE 203
++S ++PA F T +++ + F +E
Sbjct: 317 LPEMVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 56 LEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGM 115
LE+ E L ++NYYP CPQPE G+ H+D LT +L N V GLQ+ +G
Sbjct: 198 LEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLFYEGK 256
Query: 116 WIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVY-P 174
W+ +P++ + ++GD +EI++NGKY+SI HR VN + R+S F D V P
Sbjct: 257 WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 316
Query: 175 ASSLISEKAPALFRRLTVEEYLSGR-FARE 203
+S ++PA F T +++ + F +E
Sbjct: 317 LPEXVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 53 CLFLEEMKNFF----ENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGL 108
+L+ ++FF ++G V+R+ +YPP P+ H D +T+LL E GL
Sbjct: 150 ATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE-GGL 208
Query: 109 QI-KKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGT----- 162
++ +DG W+P+ P P ++N+GD +E +TN S HR VN ER V
Sbjct: 209 EVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVPRYSTPF 267
Query: 163 FYYTRYDGEVYPASSLISEKAPALF-RRLTVEEYLSGRFARELR 205
F + D E+ + ++ + P + +T +E+L R RE++
Sbjct: 268 FLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRL-REIK 310
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 23/143 (16%)
Query: 69 VMRMNYYPPCPQPEKVAGL--TPHSDGCGLTILLQINEVEGLQIK-KDGMWIPLTPLPNA 125
++R+ +YPP E+ + H D +T+L NE GLQ+K KDG W+ +
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGN 209
Query: 126 FLVNVGDIMEIITNGKYRSIEHRAT----VNSVQERLSVGTFYYTRYDGEVYPASSLISE 181
++N+GD ++ ++G + S HR + + R+S+ F ++P S++
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLF--------LHPHPSVV-- 259
Query: 182 KAPALFRRLTVEEYLSGRFAREL 204
L R T + YL R REL
Sbjct: 260 ----LSERYTADSYLXERL-REL 277
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 69 VMRMNYYPPCPQ----PEKVAGLTPHSDGCGLTILLQINEVEG---LQIKKDGMWIPLTP 121
++R Y+P P+ E+ + PH D +T++ Q G LQ + G + L
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 122 LPNAFLVNVGDIMEIITNGKYRSIEH 147
P+A LV G I ++T G+ ++ H
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 90 HSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRA 149
H D +T+L Q N V+ LQ++ + + +L+N G M +TN Y++ HR
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
Query: 150 T-VNSVQERLSVGTFYYTRYDGEVYP 174
VN+ ER S+ F YD + P
Sbjct: 273 KWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 69 VMRMNYYPPCPQ----PEKVAGLTPHSDGCGLTILLQINEVEG---LQIKKDGMWIPLTP 121
++R Y+P P+ E+ + PH D +T++ Q G LQ + G + L
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 122 LPNAFLVNVGDIMEIITNGKYRSIEH 147
P+A LV G I ++T G+ ++ H
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 69 VMRMNYYPPCPQ----PEKVAGLTPHSDGCGLTILLQINEVEG---LQIKKDGMWIPLTP 121
++R Y+P P+ E+ + PH D +T++ Q G LQ + G + L
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 122 LPNAFLVNVGDIMEIITNGKYRSIEH 147
P+A LV G I ++T G+ ++ H
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 69 VMRMNYYPPCPQ----PEKVAGLTPHSDGCGLTILLQINEVEG---LQIKKDGMWIPLTP 121
++R Y+P P+ E+ + PH D +T++ Q G LQ + G + L
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 122 LPNAFLVNVGDIMEIITNGKYRSIEH 147
P+A LV G I ++T G+ ++ H
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 90 HSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRA 149
H D +T+L Q N V+ LQ++ + + +L+N G M +TN Y++ HR
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
Query: 150 T-VNSVQERLSVGTFYYTRYDGEVYP 174
VN+ ER S+ F YD + P
Sbjct: 273 KWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 69 VMRMNYYPPCPQ----PEKVAGLTPHSDGCGLTILLQINEVEG---LQIKKDGMWIPLTP 121
++R Y+P P+ E+ + PH D +T++ Q G LQ + G + L
Sbjct: 178 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 237
Query: 122 LPNAFLVNVGDIMEIITNGKYRSIEH 147
P+A LV G I ++T G+ ++ H
Sbjct: 238 RPDAVLVFCGAIATLVTGGQVKAPRH 263
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 70 MRMNYYPP---CPQPEKVAGLTPHS-DGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNA 125
++MN P CP +K A DG + IL ++V+ ++ ++DG W P+ P A
Sbjct: 246 LQMNEKKPTWICPVCDKKAAYESLILDGLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEA 305
Query: 126 FLVNVGDIMEI 136
V+ +I
Sbjct: 306 MKVSSQPCTKI 316
>pdb|2Q83|A Chain A, Crystal Structure Of Ytaa (2635576) From Bacillus Subtilis
At 2.50 A Resolution
pdb|2Q83|B Chain B, Crystal Structure Of Ytaa (2635576) From Bacillus Subtilis
At 2.50 A Resolution
Length = 346
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 54 LFLEEMKNFFENGLQV----MRMNYYPPCPQPEKVAGLTPHSDGCGLTIL 99
L+L+E+ F E+GL++ ++ Y P Q +K L G G T+L
Sbjct: 187 LYLQEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLL 236
>pdb|2PGG|A Chain A, Crystal Structure Of A Birnavirus (Ibdv) Rna-Dependent Rna
Polymerase Vp1
Length = 774
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 82 EKVAGLTPHSDGCGL-------TILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIM 134
E G P+ D L LL I G + D W+PLT +P+ LV GD+
Sbjct: 151 EVATGRNPNKDPLKLGYTFESIAQLLDITLPVGPPGEDDKPWVPLTRVPSRMLVLTGDV- 209
Query: 135 EIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEV 172
+G + ++ +N + S G Y R GE
Sbjct: 210 ----DGDFEVEDYLPKINL---KSSSGLPYVGRTKGET 240
>pdb|2PUS|A Chain A, Unprecedented Activation Mechanism Of A Non-Canonical
Rna-Dependent Rna Polymerase
pdb|2QJ1|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase Incubated With An Oligopeptide Mimicking The
Vp3 C-Terminus
pdb|2R70|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase, Cocrystallized With An Oligopeptide
Mimicking The Vp3 C-Terminus.
pdb|2R72|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase, Incubated With Mg2+ Ion
Length = 852
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 82 EKVAGLTPHSDGCGL-------TILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIM 134
E G P+ D L LL I G + D W+PLT +P+ LV GD+
Sbjct: 188 EVATGRNPNKDPLKLGYTFESIAQLLDITLPVGPPGEDDKPWVPLTRVPSRMLVLTGDV- 246
Query: 135 EIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEV 172
+G + ++ +N + S G Y R GE
Sbjct: 247 ----DGDFEVEDYLPKINL---KSSSGLPYVGRTKGET 277
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 168 YDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLLNELSNQPIHEP 226
Y E +P + I AL L + +G F L+G S L E S QP+ P
Sbjct: 337 YQAERFPVNQAIVSYGHALATSLEDRQRFAGVFDTALQGSSRTPEALGGERSYQPVRSP 395
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In Complex
With Galnac
Length = 444
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 100 LQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEI--ITNGKYRSIEHRATVNS 153
++ NE L + W +TPL + G + EI TNGK+++ ++ +N
Sbjct: 387 IKRNEAFPLDVYDLATWYSITPLSEKSIAENGAVQEIPDFTNGKWKNAKNTFAIND 442
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,971,922
Number of Sequences: 62578
Number of extensions: 269226
Number of successful extensions: 512
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 19
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)