Query 044892
Match_columns 152
No_of_seqs 137 out of 839
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13947 GUB_WAK_bind: Wall-as 100.0 3.6E-32 7.8E-37 192.6 11.7 104 25-133 1-106 (106)
2 PF08261 Carcinustatin: Carcin 55.4 5.3 0.00011 15.5 0.4 6 38-43 3-8 (8)
3 PF07213 DAP10: DAP10 membrane 44.0 16 0.00034 24.7 1.5 13 24-37 21-33 (79)
4 PF07172 GRP: Glycine rich pro 32.3 32 0.0007 23.8 1.7 16 1-16 1-19 (95)
5 PF05953 Allatostatin: Allatos 31.9 22 0.00048 15.1 0.5 7 38-44 5-11 (11)
6 PF15240 Pro-rich: Proline-ric 31.2 29 0.00063 27.0 1.4 11 6-16 2-12 (179)
7 PF09044 Kp4: Kp4; InterPro: 29.5 22 0.00047 26.2 0.4 18 26-44 96-113 (128)
8 PF08685 GON: GON domain; Int 26.8 3.2E+02 0.007 21.6 7.6 43 96-138 126-169 (201)
9 PF14353 CpXC: CpXC protein 26.2 34 0.00073 24.4 1.0 19 25-44 38-57 (128)
10 PRK10081 entericidin B membran 17.2 1.5E+02 0.0032 18.1 2.3 14 1-14 1-14 (48)
No 1
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=99.98 E-value=3.6e-32 Score=192.64 Aligned_cols=104 Identities=41% Similarity=0.835 Sum_probs=88.4
Q ss_pred CCCCCCCcCCeeeecCCccCCCCCCCCCCeEEccCCCCCCeeecCCCccEEEEEEecCCccceEEEeeceeeeccCCCCC
Q 044892 25 RFPCPTECGNVSISYPFGIGEGCYFDKGYEVICDHSSGTPKAFLPGVNRLELVDILSNDSRAAVRVNVPAIFLNSSSKRT 104 (152)
Q Consensus 25 ~~~C~~~CGnv~IpYPFGig~gC~~~~gF~l~C~~~~~~p~l~L~~~~~~~V~~Is~~~~~~~~~v~~~~~~~~C~~~~~ 104 (152)
+++||++||||+||||||+|++|++.++|+|+|++++++|+|++.+. +|||++|+|+++ +++|..++ .+.|+....
T Consensus 1 ~~~C~~~CGnv~IpYPFgi~~~C~~~~~F~L~C~~~~~~~~l~l~~~-~~~V~~I~~~~~--~i~v~~~~-~~~~~~~~~ 76 (106)
T PF13947_consen 1 KPGCPSSCGNVSIPYPFGIGPGCGRDPGFELTCNNNTSPPKLLLSSG-NYEVLSISYENG--TIRVSDPI-SSNCYSSSS 76 (106)
T ss_pred CCCCCCccCCEeecCCCccCCCCCCCCCcEEECCCCCCCceeEecCC-cEEEEEEecCCC--EEEEEecc-ccceecCCC
Confidence 58999999999999999999999995599999998877899998655 999999999999 99999998 788877654
Q ss_pred CCc-eeeeecCCCCeEeeC-CCeEEEEccCc
Q 044892 105 SNI-AKSVNLSGTPFCFST-DNKFAAIGCKM 133 (152)
Q Consensus 105 ~~~-~~~~~l~~~pF~~S~-~N~f~~~GC~~ 133 (152)
... ..++++.. ||.+|+ +|+|+++||++
T Consensus 77 ~~~~~~~~~~~~-~~~~s~~~N~~~~~GC~t 106 (106)
T PF13947_consen 77 SNSSNSNLSLNG-PFFFSSSSNKFTVVGCNT 106 (106)
T ss_pred CcccccEEeecC-CceEccCCcEEEEECCCC
Confidence 331 22344545 899988 99999999985
No 2
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=55.39 E-value=5.3 Score=15.45 Aligned_cols=6 Identities=50% Similarity=1.387 Sum_probs=4.1
Q ss_pred ecCCcc
Q 044892 38 SYPFGI 43 (152)
Q Consensus 38 pYPFGi 43 (152)
||-||+
T Consensus 3 py~fgl 8 (8)
T PF08261_consen 3 PYSFGL 8 (8)
T ss_pred cccccC
Confidence 677774
No 3
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=44.00 E-value=16 Score=24.71 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=6.6
Q ss_pred CCCCCCCCcCCeee
Q 044892 24 ERFPCPTECGNVSI 37 (152)
Q Consensus 24 ~~~~C~~~CGnv~I 37 (152)
...+|. .||.++-
T Consensus 21 ~~gscs-~C~~ls~ 33 (79)
T PF07213_consen 21 QPGSCS-GCYPLSP 33 (79)
T ss_pred CCCCCC-CccccCH
Confidence 333454 6766543
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.30 E-value=32 Score=23.81 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=7.4
Q ss_pred ChhHHHH---HHHHHHHHh
Q 044892 1 MALHLCL---VLLQIIVLH 16 (152)
Q Consensus 1 m~~~~~~---~~~~~ll~~ 16 (152)
|+-+.++ |+|++|||+
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 5554433 344444444
No 5
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=31.95 E-value=22 Score=15.15 Aligned_cols=7 Identities=57% Similarity=1.417 Sum_probs=5.1
Q ss_pred ecCCccC
Q 044892 38 SYPFGIG 44 (152)
Q Consensus 38 pYPFGig 44 (152)
.|-||+|
T Consensus 5 ~Y~FGLG 11 (11)
T PF05953_consen 5 MYSFGLG 11 (11)
T ss_pred ccccCcC
Confidence 4888876
No 6
>PF15240 Pro-rich: Proline-rich
Probab=31.21 E-value=29 Score=27.00 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 044892 6 CLVLLQIIVLH 16 (152)
Q Consensus 6 ~~~~~~~ll~~ 16 (152)
||+||.+.||+
T Consensus 2 LlVLLSvALLA 12 (179)
T PF15240_consen 2 LLVLLSVALLA 12 (179)
T ss_pred hhHHHHHHHHH
Confidence 44444333333
No 7
>PF09044 Kp4: Kp4; InterPro: IPR015131 Killer toxins are polypeptides secreted by some fungal species that kill sensitive cells of the same or related species, often functioning by creating pores in target cell membranes. The fungal killer toxin KP4 from the corn smut fungus, Ustilago maydis (Smut fungus), is encoded by a resident symbiotic double-stranded RNA virus, Ustilago maydis P4 virus (UmV4), within fungal cells. Unlike most killer toxins, KP4 is a single polypeptide []. KP4 inhibits voltage-gated calcium channels in mammalian cells, which in turn inhibits cell growth and division by blocking calcium import. KP4 adopts a structure consisting of a two-layer alpha/beta sandwich with a left-handed crossover []. ; PDB: 1KPT_B.
Probab=29.49 E-value=22 Score=26.20 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=9.8
Q ss_pred CCCCCCcCCeeeecCCccC
Q 044892 26 FPCPTECGNVSISYPFGIG 44 (152)
Q Consensus 26 ~~C~~~CGnv~IpYPFGig 44 (152)
-+|. +||.|.+-||++..
T Consensus 96 HGC~-~CGSvP~~y~~~gN 113 (128)
T PF09044_consen 96 HGCK-VCGSVPYFYTQGGN 113 (128)
T ss_dssp HT-S-S-EEEE---SSTT-
T ss_pred cCCC-CCCCCCcccCCCCC
Confidence 4776 99999988998764
No 8
>PF08685 GON: GON domain; InterPro: IPR012314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The ADAMTSs (a disintegrin and metalloproteinase domain with thrombospondin type-1 modules) are a family of zinc dependent metalloproteinases that play important roles in a variety of normal and pathological conditions. These enzymes show a complex domain organisation including signal sequence, propeptide, metalloproteinase domain (see PDOC50215 from PROSITEDOC), disintegrin-like domain (see PDOC00351 from PROSITEDOC), central TS-1 motif (see PDOC50092 from PROSITEDOC), cysteine-rich region, and a variable number of TS-like repeats at the C-terminal region. The GON domain is an approximately 200-residue module, whose presence is the hallmark of a subfamily of structurally and evolutionarily related ADAMTSs, called GON- ADAMTSs. The GON domain is characterised by the presence of several conserved cysteine residues and is likely to be globular [], []. Some proteins known to contain a GON domain are listed below: Mammalian ADAMTS-9 Mammalian ADAMTS-20 Caenorhabditis elegans gon-1, a protease required for gonadal morphogenesis Proteins containing the GON domain belong to MEROPS peptidase subfamily M12B (adamalysin, clan MA).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding
Probab=26.80 E-value=3.2e+02 Score=21.61 Aligned_cols=43 Identities=23% Similarity=0.137 Sum_probs=31.5
Q ss_pred eeccCCCCCCC-ceeeeecCCCCeEeeCCCeEEEEccCceeEec
Q 044892 96 FLNSSSKRTSN-IAKSVNLSGTPFCFSTDNKFAAIGCKMRYHQG 138 (152)
Q Consensus 96 ~~~C~~~~~~~-~~~~~~l~~~pF~~S~~N~f~~~GC~~~a~l~ 138 (152)
+.+|+....=. ...+++|.+++|.+++.-++..-|......+.
T Consensus 126 AGDCyS~~~CpqG~FsIdL~GTgf~vs~~~~W~~~G~~a~~~i~ 169 (201)
T PF08685_consen 126 AGDCYSAARCPQGRFSIDLRGTGFRVSPDTKWVTQGNYAVGKIN 169 (201)
T ss_pred cccccccCCCCCceEEEeeCCCceEecCCCEEEeCCcEeEEEEE
Confidence 45687764211 24578999999999997789999998777663
No 9
>PF14353 CpXC: CpXC protein
Probab=26.20 E-value=34 Score=24.36 Aligned_cols=19 Identities=37% Similarity=1.039 Sum_probs=13.7
Q ss_pred CCCCCCCcCC-eeeecCCccC
Q 044892 25 RFPCPTECGN-VSISYPFGIG 44 (152)
Q Consensus 25 ~~~C~~~CGn-v~IpYPFGig 44 (152)
.-.|| +||. ..+.|||=.-
T Consensus 38 ~~~CP-~Cg~~~~~~~p~lY~ 57 (128)
T PF14353_consen 38 SFTCP-SCGHKFRLEYPLLYH 57 (128)
T ss_pred EEECC-CCCCceecCCCEEEE
Confidence 34688 8994 5789988653
No 10
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=17.21 E-value=1.5e+02 Score=18.10 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=8.4
Q ss_pred ChhHHHHHHHHHHH
Q 044892 1 MALHLCLVLLQIIV 14 (152)
Q Consensus 1 m~~~~~~~~~~~ll 14 (152)
|.++++++++++++
T Consensus 1 MmKk~i~~i~~~l~ 14 (48)
T PRK10081 1 MVKKTIAAIFSVLV 14 (48)
T ss_pred ChHHHHHHHHHHHH
Confidence 66777776555443
Done!