Query 044892
Match_columns 152
No_of_seqs 137 out of 839
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rm2_L Thrombin light chain; s 23.2 29 0.00099 19.1 0.9 15 41-55 2-17 (36)
2 3j0c_A E1 envelope glycoprotei 17.4 1.8E+02 0.0061 24.3 4.9 18 120-137 170-188 (442)
3 1ccv_A AMCI, chymotrypsin inhi 14.2 70 0.0024 18.5 1.3 29 26-55 14-44 (56)
4 3n40_F E1 envelope glycoprotei 12.9 2.2E+02 0.0075 23.4 4.2 20 31-50 79-99 (393)
5 3knd_B Targeting protein for X 12.7 66 0.0022 20.9 0.9 14 33-46 1-14 (81)
6 1jy2_P Fibrinogen gamma-B chai 12.6 16 0.00055 21.4 -1.9 8 26-33 17-24 (48)
7 1hx2_A BSTI; beta-sheet disulf 12.4 61 0.0021 19.0 0.6 13 25-37 14-26 (60)
8 2ljo_A Non-specific lipid-tran 12.0 69 0.0024 20.9 0.8 20 29-49 71-90 (93)
9 3n44_F E1 envelope glycoprotei 11.6 3.1E+02 0.011 23.1 4.7 20 31-50 99-119 (473)
10 3zyj_A Leucine-rich repeat-con 11.5 72 0.0025 25.5 1.0 11 22-32 29-39 (440)
No 1
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=23.22 E-value=29 Score=19.11 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=7.9
Q ss_pred CccCC-CCCCCCCCeE
Q 044892 41 FGIGE-GCYFDKGYEV 55 (152)
Q Consensus 41 FGig~-gC~~~~gF~l 55 (152)
||.|. +|+..+.|+-
T Consensus 2 fG~ge~~CG~rPlfEk 17 (36)
T 3rm2_L 2 FGSGEADCGLRPLFEK 17 (36)
T ss_dssp ----CTTTTCCTTTGG
T ss_pred CcccccccccCchhhh
Confidence 78874 8998767753
No 2
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=17.41 E-value=1.8e+02 Score=24.35 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=11.8
Q ss_pred eeC-CCeEEEEccCceeEe
Q 044892 120 FST-DNKFAAIGCKMRYHQ 137 (152)
Q Consensus 120 ~S~-~N~f~~~GC~~~a~l 137 (152)
.|. +||.++++=..+-+-
T Consensus 170 wsPFD~KiVvyk~eVYNyD 188 (442)
T 3j0c_A 170 WTPFDRKIVQYAGEIYNYD 188 (442)
T ss_dssp CCSSCSEEEEETTEEECCC
T ss_pred cCCCCceeEEecceeeccC
Confidence 355 899998865544443
No 3
>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph, canonical inhibitor, hydrolase inhibitor; NMR {Apis mellifera} SCOP: g.22.1.1
Probab=14.16 E-value=70 Score=18.49 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=16.4
Q ss_pred CCCCCCcCCeeeecCCcc--CCCCCCCCCCeE
Q 044892 26 FPCPTECGNVSISYPFGI--GEGCYFDKGYEV 55 (152)
Q Consensus 26 ~~C~~~CGnv~IpYPFGi--g~gC~~~~gF~l 55 (152)
+.|+.+|.+. .+-+--. .+||+=++||-+
T Consensus 14 s~C~~tC~~~-~~~~C~~~C~~GC~C~~G~v~ 44 (56)
T 1ccv_A 14 SACAPTCAQP-KTRICTMQCRIGCQCQEGFLR 44 (56)
T ss_dssp CTTCCCSSCS-CCCCSSSSCEEEEEECTTCEE
T ss_pred CCCcCccCCC-CCCCCcCcCCCCCcCCCCeeE
Confidence 5799999987 2211111 135665556654
No 4
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=12.86 E-value=2.2e+02 Score=23.42 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=12.4
Q ss_pred CcCCeeeecCC-ccCCCCCCC
Q 044892 31 ECGNVSISYPF-GIGEGCYFD 50 (152)
Q Consensus 31 ~CGnv~IpYPF-Gig~gC~~~ 50 (152)
+|--.+=-||| |-|.-||-+
T Consensus 79 ~CkVftGVYPfmWGGAyCFCd 99 (393)
T 3n40_F 79 SCKVFTGVYPFMWGGAYCFCD 99 (393)
T ss_dssp EEEEEESCCCEETTEESCSCS
T ss_pred cceEecccccccccceeEeec
Confidence 45323335999 666788854
No 5
>3knd_B Targeting protein for XKLP2; mitosis, importin, transport, protein transport; 2.15A {Xenopus laevis}
Probab=12.72 E-value=66 Score=20.87 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=11.9
Q ss_pred CCeeeecCCccCCC
Q 044892 33 GNVSISYPFGIGEG 46 (152)
Q Consensus 33 Gnv~IpYPFGig~g 46 (152)
|+++||=||-+..|
T Consensus 1 ~g~T~pkPFnls~g 14 (81)
T 3knd_B 1 GGHTVPKPFNLSKG 14 (81)
T ss_pred CCCccccccccCCC
Confidence 67889999999876
No 6
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=12.56 E-value=16 Score=21.42 Aligned_cols=8 Identities=63% Similarity=1.402 Sum_probs=6.2
Q ss_pred CCCCCCcC
Q 044892 26 FPCPTECG 33 (152)
Q Consensus 26 ~~C~~~CG 33 (152)
.-||++||
T Consensus 17 sYCPTTCG 24 (48)
T 1jy2_P 17 SYCPTTCG 24 (48)
T ss_dssp CEEECHHH
T ss_pred CcCCcccc
Confidence 34899998
No 7
>1hx2_A BSTI; beta-sheet disulfide-rich, hydrolase inhibitor; NMR {Bombina bombina} SCOP: g.22.1.2
Probab=12.44 E-value=61 Score=18.97 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.2
Q ss_pred CCCCCCCcCCeee
Q 044892 25 RFPCPTECGNVSI 37 (152)
Q Consensus 25 ~~~C~~~CGnv~I 37 (152)
.+.|+.+|.+...
T Consensus 14 gs~C~~tC~~~~~ 26 (60)
T 1hx2_A 14 ASSCPKTCETRNK 26 (60)
T ss_dssp CCSSCCCTTTCCC
T ss_pred cCcCccccCCCCC
Confidence 4679999998763
No 8
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=11.96 E-value=69 Score=20.90 Aligned_cols=20 Identities=35% Similarity=0.826 Sum_probs=14.4
Q ss_pred CCCcCCeeeecCCccCCCCCC
Q 044892 29 PTECGNVSISYPFGIGEGCYF 49 (152)
Q Consensus 29 ~~~CGnv~IpYPFGig~gC~~ 49 (152)
|.+|| |+||||+.-.-.|..
T Consensus 71 P~~Cg-V~~p~~Is~~~dC~~ 90 (93)
T 2ljo_A 71 PGKCG-VNIPYKISTTTNCNT 90 (93)
T ss_dssp HHHHT-CCCSSCCSTTCCGGG
T ss_pred hHhcC-CCCCCCCCCCCCCCC
Confidence 45775 678999877767754
No 9
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=11.63 E-value=3.1e+02 Score=23.06 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=12.4
Q ss_pred CcCCeeeecCC-ccCCCCCCC
Q 044892 31 ECGNVSISYPF-GIGEGCYFD 50 (152)
Q Consensus 31 ~CGnv~IpYPF-Gig~gC~~~ 50 (152)
+|--.+=-||| |-|.-||-+
T Consensus 99 ~CkVftGVYPFMWGGAyCFCD 119 (473)
T 3n44_F 99 SCKVFTGVYPFMWGGAYCFCD 119 (473)
T ss_dssp EEEEEESCCCEETTEESCSCS
T ss_pred cceEecccccccccceeEeec
Confidence 45323335999 556788854
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=11.52 E-value=72 Score=25.54 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=5.0
Q ss_pred CCCCCCCCCCc
Q 044892 22 ASERFPCPTEC 32 (152)
Q Consensus 22 ~~~~~~C~~~C 32 (152)
......||..|
T Consensus 29 ~~~~~~Cp~~C 39 (440)
T 3zyj_A 29 TGSAQTCPSVC 39 (440)
T ss_dssp ----CCCCSSS
T ss_pred CcccccCCCCC
Confidence 33456788766
Done!