Query 044892
Match_columns 152
No_of_seqs 137 out of 839
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 13:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044892.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044892hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 22.6 6.1 0.00045 24.4 -0.7 19 29-48 72-90 (93)
2 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 15.1 34 0.0025 19.0 1.6 31 25-55 14-46 (60)
3 d2dloa2 g.39.1.3 (A:43-75) Thy 12.2 42 0.0031 16.8 1.2 14 112-125 8-21 (33)
4 d2cona1 g.41.15.1 (A:8-73) RNA 11.1 36 0.0026 19.6 0.8 11 24-35 22-32 (66)
5 d2akla2 g.41.3.5 (A:3-40) Hypo 10.2 60 0.0044 16.6 1.4 10 24-34 2-11 (38)
6 d1n0za_ g.41.11.1 (A:) Znf265, 8.3 61 0.0044 17.2 0.9 10 27-36 16-26 (45)
7 d1ibia1 g.39.1.3 (A:117-144) C 7.1 70 0.0051 15.2 0.7 6 28-34 4-9 (28)
8 d2vv5a2 d.58.43.1 (A:180-280) 7.0 53 0.0039 19.2 0.3 6 35-40 87-92 (101)
9 d1x64a1 g.39.1.3 (A:8-52) PDZ 6.8 1.2E+02 0.0086 16.0 1.7 12 22-34 15-26 (45)
10 d1qxfa_ g.41.8.4 (A:) Ribosoma 6.1 1.1E+02 0.0077 17.1 1.3 11 28-39 10-20 (58)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=22.59 E-value=6.1 Score=24.42 Aligned_cols=19 Identities=42% Similarity=1.001 Sum_probs=13.4
Q ss_pred CCCcCCeeeecCCccCCCCC
Q 044892 29 PTECGNVSISYPFGIGEGCY 48 (152)
Q Consensus 29 ~~~CGnv~IpYPFGig~gC~ 48 (152)
|.+|| |++|||+.-.-.|.
T Consensus 72 P~~C~-v~l~~pis~~~dCs 90 (93)
T d1fk5a_ 72 PSKCG-VSIPYTISTSTDCS 90 (93)
T ss_dssp HHHTT-CCCSSCCSTTCCGG
T ss_pred hHhcC-CCCCCCCCCCCCCC
Confidence 55786 77888877655664
No 2
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=15.06 E-value=34 Score=19.00 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=17.7
Q ss_pred CCCCCCCcCCeeeecCC--ccCCCCCCCCCCeE
Q 044892 25 RFPCPTECGNVSISYPF--GIGEGCYFDKGYEV 55 (152)
Q Consensus 25 ~~~C~~~CGnv~IpYPF--Gig~gC~~~~gF~l 55 (152)
.+.||.+|.+.+.+-.= .=-+||+=++||-+
T Consensus 14 ~s~Cp~tC~~~~~~~~C~~~C~eGC~Cp~G~vl 46 (60)
T d1hx2a_ 14 ASSCPKTCETRNKLVLCDKKCNQRCGCISGTVL 46 (60)
T ss_dssp CCSSCCCTTTCCCSSSCSSCCCSEEEECTTCEE
T ss_pred cCCCccccCCCCCCCCCCCCCCccCCCCCCEeE
Confidence 46799999997643211 11145655556655
No 3
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.25 E-value=42 Score=16.77 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=10.8
Q ss_pred ecCCCCeEeeCCCe
Q 044892 112 NLSGTPFCFSTDNK 125 (152)
Q Consensus 112 ~l~~~pF~~S~~N~ 125 (152)
.|+|-||++...|+
T Consensus 8 ~LDGvPFtvD~~n~ 21 (33)
T d2dloa2 8 GLDGIPFTVDATSQ 21 (33)
T ss_dssp BCTTSCEECCTTCC
T ss_pred ccCCCcEEEcCCCC
Confidence 47888999987664
No 4
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.07 E-value=36 Score=19.62 Aligned_cols=11 Identities=45% Similarity=0.981 Sum_probs=6.3
Q ss_pred CCCCCCCCcCCe
Q 044892 24 ERFPCPTECGNV 35 (152)
Q Consensus 24 ~~~~C~~~CGnv 35 (152)
.+.=|| +|||-
T Consensus 22 ~k~FCp-kCGn~ 32 (66)
T d2cona1 22 NRVFCG-HCGNK 32 (66)
T ss_dssp SCCSCS-SSCCS
T ss_pred ccccCc-ccCCC
Confidence 444566 67753
No 5
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.25 E-value=60 Score=16.65 Aligned_cols=10 Identities=40% Similarity=1.168 Sum_probs=6.2
Q ss_pred CCCCCCCCcCC
Q 044892 24 ERFPCPTECGN 34 (152)
Q Consensus 24 ~~~~C~~~CGn 34 (152)
..|.|| +|+.
T Consensus 2 ~lP~CP-~C~s 11 (38)
T d2akla2 2 TLPPCP-QCNS 11 (38)
T ss_dssp CSCCCT-TTCC
T ss_pred CCCcCC-CCCC
Confidence 356777 6654
No 6
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.27 E-value=61 Score=17.19 Aligned_cols=10 Identities=60% Similarity=1.461 Sum_probs=7.8
Q ss_pred CCCC-CcCCee
Q 044892 27 PCPT-ECGNVS 36 (152)
Q Consensus 27 ~C~~-~CGnv~ 36 (152)
.||+ +||+++
T Consensus 16 ~C~~~~C~~~N 26 (45)
T d1n0za_ 16 ICPDKKCGNVN 26 (45)
T ss_dssp BCSSTTTCCBC
T ss_pred cCCCCCCCCee
Confidence 3884 999985
No 7
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=7.05 E-value=70 Score=15.18 Aligned_cols=6 Identities=50% Similarity=1.807 Sum_probs=3.1
Q ss_pred CCCCcCC
Q 044892 28 CPTECGN 34 (152)
Q Consensus 28 C~~~CGn 34 (152)
|| +||.
T Consensus 4 Cp-RC~~ 9 (28)
T d1ibia1 4 CS-RCGD 9 (28)
T ss_dssp CT-TTSS
T ss_pred Cc-ccch
Confidence 44 5554
No 8
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.95 E-value=53 Score=19.25 Aligned_cols=6 Identities=50% Similarity=1.226 Sum_probs=2.4
Q ss_pred eeeecC
Q 044892 35 VSISYP 40 (152)
Q Consensus 35 v~IpYP 40 (152)
|.||||
T Consensus 87 I~ip~P 92 (101)
T d2vv5a2 87 ISFPYP 92 (101)
T ss_dssp CCCCCC
T ss_pred CcCCCC
Confidence 334443
No 9
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.75 E-value=1.2e+02 Score=15.99 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=8.4
Q ss_pred CCCCCCCCCCcCC
Q 044892 22 ASERFPCPTECGN 34 (152)
Q Consensus 22 ~~~~~~C~~~CGn 34 (152)
.+-+|-|. +||+
T Consensus 15 ~QkLP~Cd-kCg~ 26 (45)
T d1x64a1 15 AQRMPLCD-KCGS 26 (45)
T ss_dssp CCSCCBCT-TTCC
T ss_pred cccCcccc-ccCC
Confidence 45567775 8987
No 10
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.12 E-value=1.1e+02 Score=17.09 Aligned_cols=11 Identities=27% Similarity=1.162 Sum_probs=0.0
Q ss_pred CCCCcCCeeeec
Q 044892 28 CPTECGNVSISY 39 (152)
Q Consensus 28 C~~~CGnv~IpY 39 (152)
|| .|+|+.|=|
T Consensus 10 C~-~C~n~~ivF 20 (58)
T d1qxfa_ 10 CP-DCEHEQVIF 20 (58)
T ss_dssp CT-TTCCEEEEE
T ss_pred CC-CCCCeEEEE
Done!