BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044897
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 12  MIAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVD--HCPGCPSTIDLS 69
           M       ++ +G  CG  F +KCT      P  C+GE V V I D    P  P   DLS
Sbjct: 55  MTGCGNTPIFKSGRGCGSCFEIKCT-----KPEACSGEPVVVHITDDNEEPIAPYHFDLS 109

Query: 70  REAFTQIAN 78
             AF  +A 
Sbjct: 110 GHAFGAMAK 118


>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 14/88 (15%)

Query: 12  MIAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVD--HCPGCPSTIDLS 69
           M A     ++ +G  CG  + V+C          C+G  VTV I D  + P  P   DLS
Sbjct: 55  MTACGNVPIFKDGKGCGSCYEVRCKEKPE-----CSGNPVTVYITDMNYEPIAPYHFDLS 109

Query: 70  REAFTQIANPVA-------GIINIDYHQ 90
            +AF  +A P         GI+++++ +
Sbjct: 110 GKAFGSLAKPGLNDKIRHCGIMDVEFRR 137


>pdb|2BH0|A Chain A, Crystal Structure Of A Semet Derivative Of Expa From
           Bacillus Subtilis At 2.5 Angstrom
          Length = 208

 Score = 28.5 bits (62), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 50  SVTVKIVDHCP-GCPSTIDLSREAFTQIANPVAGIINIDYH 89
             TV + D  P G    +DLS  AF +I N   G INI + 
Sbjct: 64  KTTVYVTDLYPEGARGALDLSPNAFRKIGNXKDGKINIKWR 104


>pdb|3D30|A Chain A, Structure Of An Expansin Like Protein From Bacillus
           Subtilis At 1.9a Resolution
 pdb|4FER|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Cellohexaose
 pdb|4FER|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Cellohexaose
 pdb|4FFT|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Mixed-Linkage Glucan
 pdb|4FFT|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Mixed-Linkage Glucan
 pdb|4FG2|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Cellotetraose
 pdb|4FG2|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Cellotetraose
 pdb|4FG4|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Hemithiocellodextrin
 pdb|4FG4|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Hemithiocellodextrin
          Length = 208

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 50  SVTVKIVDHCP-GCPSTIDLSREAFTQIANPVAGIINIDYH 89
             TV + D  P G    +DLS  AF +I N   G INI + 
Sbjct: 64  KTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWR 104


>pdb|1BW3|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A
           Protein From Barley Seed
 pdb|1BW4|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A
           Protein From Barley Seed
          Length = 125

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 25  AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCPSTIDLSREAFTQI-ANPVA-- 81
           A CGK   V          +P TG  +T +IVD C      +D     FT+I  N +   
Sbjct: 61  AACGKCLRVT---------NPATGAQITARIVDQCANGGLDLDWD-TVFTKIDTNGIGYQ 110

Query: 82  -GIINIDYH 89
            G +N++Y 
Sbjct: 111 QGHLNVNYQ 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,873,522
Number of Sequences: 62578
Number of extensions: 99181
Number of successful extensions: 143
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 6
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)