Query 044897
Match_columns 90
No_of_seqs 132 out of 1063
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:52:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 1.1E-31 2.3E-36 175.4 11.3 90 1-90 35-125 (125)
2 smart00837 DPBB_1 Rare lipopro 99.9 3.3E-25 7.1E-30 136.9 7.2 72 13-88 1-87 (87)
3 PF03330 DPBB_1: Rare lipoprot 99.9 4.6E-25 9.9E-30 132.9 7.3 75 13-88 1-78 (78)
4 PLN00050 expansin A; Provision 99.9 5.3E-25 1.2E-29 157.4 8.6 86 1-90 44-147 (247)
5 PLN00193 expansin-A; Provision 99.9 1.1E-24 2.3E-29 156.5 8.8 88 1-90 49-155 (256)
6 PLN03023 Expansin-like B1; Pro 99.9 1.5E-23 3.3E-28 149.9 8.6 83 2-90 45-138 (247)
7 PF00967 Barwin: Barwin family 99.3 6.9E-12 1.5E-16 80.6 4.1 54 25-89 58-115 (119)
8 COG4305 Endoglucanase C-termin 99.1 2.7E-10 5.9E-15 78.5 6.8 71 8-89 53-128 (232)
9 PF07249 Cerato-platanin: Cera 99.1 9.5E-10 2E-14 71.4 8.3 65 11-90 43-111 (119)
10 TIGR00413 rlpA rare lipoprotei 98.9 1.1E-08 2.5E-13 71.7 9.2 73 2-89 16-89 (208)
11 COG0797 RlpA Lipoproteins [Cel 98.7 4.7E-08 1E-12 69.6 7.4 55 26-89 118-173 (233)
12 PRK10672 rare lipoprotein A; P 98.6 3.7E-07 8.1E-12 68.7 9.4 55 25-88 113-168 (361)
13 PF02015 Glyco_hydro_45: Glyco 96.2 0.0074 1.6E-07 42.4 3.8 42 25-72 82-124 (201)
14 TIGR02645 ARCH_P_rylase putati 59.0 49 0.0011 26.5 6.5 52 24-86 26-78 (493)
15 PRK08061 rpsN 30S ribosomal pr 55.5 8.1 0.00018 22.2 1.3 37 52-88 17-61 (61)
16 KOG2923 Uncharacterized conser 48.7 6.9 0.00015 22.9 0.3 38 25-74 25-64 (67)
17 COG5216 Uncharacterized conser 46.6 12 0.00026 21.7 1.1 34 18-63 18-51 (67)
18 PF07610 DUF1573: Protein of u 40.2 49 0.0011 17.2 2.8 34 52-88 11-45 (45)
19 COG0199 RpsN Ribosomal protein 35.0 22 0.00048 20.4 1.0 39 50-88 15-61 (61)
20 TIGR03327 AMP_phos AMP phospho 34.2 1.9E+02 0.004 23.3 6.3 51 24-86 27-79 (500)
21 TIGR03170 flgA_cterm flagella 33.7 87 0.0019 19.4 3.7 25 25-58 93-117 (122)
22 PRK04350 thymidine phosphoryla 33.4 1.9E+02 0.0042 23.2 6.3 51 25-86 21-73 (490)
23 PF13719 zinc_ribbon_5: zinc-r 31.2 43 0.00092 16.9 1.6 15 58-72 4-18 (37)
24 PF15514 ThaI: Restriction end 30.6 63 0.0014 22.2 2.8 27 64-90 158-185 (202)
25 PRK12618 flgA flagellar basal 27.9 1.1E+02 0.0024 20.0 3.6 25 25-58 109-133 (141)
26 PRK06911 rpsN 30S ribosomal pr 27.0 42 0.0009 21.0 1.4 40 49-88 53-100 (100)
27 PF13453 zf-TFIIB: Transcripti 25.1 38 0.00082 17.3 0.8 22 53-76 16-38 (41)
28 PF13144 SAF_2: SAF-like 23.6 1.5E+02 0.0033 19.8 3.8 25 25-58 167-191 (196)
29 PF11023 DUF2614: Protein of u 23.0 41 0.00089 21.7 0.8 40 23-70 60-99 (114)
30 PHA02945 interferon resistance 22.9 91 0.002 19.2 2.3 22 47-70 59-81 (88)
31 COG4332 Uncharacterized protei 22.7 1.7E+02 0.0038 20.6 3.9 55 21-78 17-82 (203)
32 CHL00074 rps14 ribosomal prote 22.5 31 0.00067 21.6 0.1 40 49-88 53-100 (100)
33 PF05180 zf-DNL: DNL zinc fing 21.6 44 0.00096 19.5 0.7 13 54-66 27-40 (66)
34 PRK06005 flgA flagellar basal 21.3 1.8E+02 0.004 19.4 3.7 25 25-58 128-152 (160)
35 PRK06804 flgA flagellar basal 21.2 1.7E+02 0.0036 21.4 3.7 25 25-58 230-254 (261)
36 PRK08881 rpsN 30S ribosomal pr 20.9 40 0.00087 21.1 0.4 40 49-88 54-101 (101)
37 PRK02935 hypothetical protein; 20.3 62 0.0013 20.8 1.2 33 29-69 67-99 (110)
38 PRK13902 alaS alanyl-tRNA synt 20.1 68 0.0015 27.5 1.7 19 17-35 187-205 (900)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.98 E-value=1.1e-31 Score=175.39 Aligned_cols=90 Identities=79% Similarity=1.352 Sum_probs=82.2
Q ss_pred CCCCCccCCCceEEEEChhccCCCCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCC-CCCCceEcCHHHHHhhcCC
Q 044897 1 SACFGNNGQGVMIAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCP-GCPSTIDLSREAFTQIANP 79 (90)
Q Consensus 1 ~ACg~~~~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp-~C~~~lDLs~~aF~~la~~ 79 (90)
+|||+++..+.++||+|+.+|++|+.||+||+|+|.+.....+.+|+|++|+|+|+|+|| +|+.|||||+.||++||+.
T Consensus 35 gAC~~~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~ 114 (125)
T PLN03024 35 SACYRGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIANP 114 (125)
T ss_pred ccccCCCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCc
Confidence 589888888999999999999999999999999997643334568999999999999999 6889999999999999999
Q ss_pred CCcEEEEEEEC
Q 044897 80 VAGIINIDYHQ 90 (90)
Q Consensus 80 ~~G~v~i~w~~ 90 (90)
+.|+|+|+|.|
T Consensus 115 ~aG~v~V~y~~ 125 (125)
T PLN03024 115 VAGIINIDYIP 125 (125)
T ss_pred cCCEEEEEEeC
Confidence 99999999987
No 2
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.92 E-value=3.3e-25 Score=136.92 Aligned_cols=72 Identities=42% Similarity=0.815 Sum_probs=64.5
Q ss_pred EEEEChhccCCCCcCCCeEEEEEcCCCCCCCCCCC-CCeEEEEEecCCCC-----------CC---CceEcCHHHHHhhc
Q 044897 13 IAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCT-GESVTVKIVDHCPG-----------CP---STIDLSREAFTQIA 77 (90)
Q Consensus 13 ~aAls~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~-g~sv~v~VvD~Cp~-----------C~---~~lDLs~~aF~~la 77 (90)
+||+|+.||++|..||+||+|+|.+ .|..|. +++|+|+|+|+||+ |. .|||||+.||.+||
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~----~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA 76 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVD----SPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIA 76 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCC----CCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHh
Confidence 5899999999999999999999954 255776 46999999999996 53 79999999999999
Q ss_pred CCCCcEEEEEE
Q 044897 78 NPVAGIINIDY 88 (90)
Q Consensus 78 ~~~~G~v~i~w 88 (90)
....|+|+|+|
T Consensus 77 ~~~~Gvi~v~y 87 (87)
T smart00837 77 QYKAGIVPVKY 87 (87)
T ss_pred hhcCCEEeeEC
Confidence 99999999997
No 3
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.92 E-value=4.6e-25 Score=132.95 Aligned_cols=75 Identities=44% Similarity=0.899 Sum_probs=61.5
Q ss_pred EEEEChhccCCCCcCCCeEEEEEcCCCCCCCCCCCC--CeEEEEEecCCCCCC-CceEcCHHHHHhhcCCCCcEEEEEE
Q 044897 13 IAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCTG--ESVTVKIVDHCPGCP-STIDLSREAFTQIANPVAGIINIDY 88 (90)
Q Consensus 13 ~aAls~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~g--~sv~v~VvD~Cp~C~-~~lDLs~~aF~~la~~~~G~v~i~w 88 (90)
+||++..+|++|..||+||++++..+....+. |.. ++|+|+|+|+||+|+ ++||||+.||++|++.+.|+++|+|
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~-~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~~~G~i~V~w 78 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGT-CKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADPDAGVIPVEW 78 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT---BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBSTTCSSEEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccce-EEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCCCceEEEEEC
Confidence 68999999999999999999999544322111 655 999999999999999 9999999999999999999999999
No 4
>PLN00050 expansin A; Provisional
Probab=99.92 E-value=5.3e-25 Score=157.42 Aligned_cols=86 Identities=37% Similarity=0.745 Sum_probs=76.7
Q ss_pred CCC-CCcc---CCCceEEEEChhccCCCCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCC-----------CC--
Q 044897 1 SAC-FGNN---GQGVMIAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPG-----------CP-- 63 (90)
Q Consensus 1 ~AC-g~~~---~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~-----------C~-- 63 (90)
.|| |+++ +.+.++||+|+.+|++|..||+||||+|.+. +.+|.+++|+|+|+|+||+ |.
T Consensus 44 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~----~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~ 119 (247)
T PLN00050 44 GACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVND----NIWCLPGSIIITATNFCPPNLALPNNDGGWCNPP 119 (247)
T ss_pred cccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCC----CcccCCCcEEEEEecCCCCCcCcCccCCCcCCCC
Confidence 389 7765 3588999999999999999999999999652 4578877999999999996 85
Q ss_pred -CceEcCHHHHHhhcCCCCcEEEEEEEC
Q 044897 64 -STIDLSREAFTQIANPVAGIINIDYHQ 90 (90)
Q Consensus 64 -~~lDLs~~aF~~la~~~~G~v~i~w~~ 90 (90)
.|||||+.||.+||....|+|+|+|||
T Consensus 120 ~~hFDLS~~AF~~iA~~~aGii~V~yRR 147 (247)
T PLN00050 120 QQHFDLSQPVFQKIAQYKAGIVPVQYRR 147 (247)
T ss_pred CcccccCHHHHHHHhhhcCCeeeeEEEE
Confidence 899999999999999999999999997
No 5
>PLN00193 expansin-A; Provisional
Probab=99.91 E-value=1.1e-24 Score=156.50 Aligned_cols=88 Identities=33% Similarity=0.697 Sum_probs=76.2
Q ss_pred CCC-CCcc---CCCceEEEEChhccCCCCcCCCeEEEEEcCCCCCCCCCCC-CCeEEEEEecCCCC-----------CC-
Q 044897 1 SAC-FGNN---GQGVMIAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCT-GESVTVKIVDHCPG-----------CP- 63 (90)
Q Consensus 1 ~AC-g~~~---~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~-g~sv~v~VvD~Cp~-----------C~- 63 (90)
.|| |+++ +.+.++||+|+.+|++|..||+||||+|... ..+++|. |++|+|+|+|+||+ |+
T Consensus 49 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~--~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~ 126 (256)
T PLN00193 49 GACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQ--ADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNP 126 (256)
T ss_pred cccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCC--CCCccccCCCeEEEEEecCCCCcccccccCCCcCCC
Confidence 389 6654 3578999999999999999999999999431 1356784 67999999999996 86
Q ss_pred --CceEcCHHHHHhhcCCCCcEEEEEEEC
Q 044897 64 --STIDLSREAFTQIANPVAGIINIDYHQ 90 (90)
Q Consensus 64 --~~lDLs~~aF~~la~~~~G~v~i~w~~ 90 (90)
.|||||+.||.+||....|+|+|+|||
T Consensus 127 ~~~HFDLS~~AF~~iA~~~~Giv~V~yrR 155 (256)
T PLN00193 127 PLQHFDMAQPAWEKIGIYRGGIVPVLFQR 155 (256)
T ss_pred CCcccccCHHHHHHHhhhcCCeEeEEEEE
Confidence 799999999999999999999999997
No 6
>PLN03023 Expansin-like B1; Provisional
Probab=99.90 E-value=1.5e-23 Score=149.91 Aligned_cols=83 Identities=30% Similarity=0.668 Sum_probs=74.1
Q ss_pred CC-CCcc---CCCceEEEEChhccCCCCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCCCceEcCHHHHHhhc
Q 044897 2 AC-FGNN---GQGVMIAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCPSTIDLSREAFTQIA 77 (90)
Q Consensus 2 AC-g~~~---~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~~~lDLs~~aF~~la 77 (90)
|| |+++ ..+.++||+| .||++|..||+||||+|.+ |++|.+++|+|+|+|.|++++.|||||..||.+||
T Consensus 45 ACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-----~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA 118 (247)
T PLN03023 45 ACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-----PNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLA 118 (247)
T ss_pred cccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-----CCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHh
Confidence 79 6664 3578899999 9999999999999999964 67899889999999999977799999999999999
Q ss_pred C-------CCCcEEEEEEEC
Q 044897 78 N-------PVAGIINIDYHQ 90 (90)
Q Consensus 78 ~-------~~~G~v~i~w~~ 90 (90)
. ...|+|+|+|||
T Consensus 119 ~pg~~~~l~~aGiv~v~YrR 138 (247)
T PLN03023 119 RPNMAAELFAYGVVDVEYRR 138 (247)
T ss_pred CccccchhccCcEEEeEEEE
Confidence 7 467999999997
No 7
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.25 E-value=6.9e-12 Score=80.57 Aligned_cols=54 Identities=41% Similarity=0.730 Sum_probs=40.4
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCCCceEcCHHHHHhhc-CC---CCcEEEEEEE
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCPSTIDLSREAFTQIA-NP---VAGIINIDYH 89 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~~~lDLs~~aF~~la-~~---~~G~v~i~w~ 89 (90)
..||+|++||+.. +|.+++|+|||+|+. ++|||.+.+|.+|- +. ..|.+.|+|+
T Consensus 58 ~~CGkClrVTNt~---------tga~~~~RIVDqCsn--GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~ 115 (119)
T PF00967_consen 58 DSCGKCLRVTNTA---------TGAQVTVRIVDQCSN--GGLDLDPTVFNQIDTDGQGYAQGHLIVDYE 115 (119)
T ss_dssp GGTT-EEEEE-TT---------T--EEEEEEEEE-SS--SSEES-SSSHHHH-SSSHHHHHTEEEEEEE
T ss_pred ccccceEEEEecC---------CCcEEEEEEEEcCCC--CCcccChhHHhhhccCCcccccceEEEEEE
Confidence 5899999999965 799999999999774 58999999999995 32 5788988886
No 8
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.11 E-value=2.7e-10 Score=78.54 Aligned_cols=71 Identities=31% Similarity=0.472 Sum_probs=62.4
Q ss_pred CCCceEEEEChhccCCC----CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCC-CceEcCHHHHHhhcCCCCc
Q 044897 8 GQGVMIAAAGDALWDNG----AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCP-STIDLSREAFTQIANPVAG 82 (90)
Q Consensus 8 ~~~~~~aAls~~~~~~g----~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~-~~lDLs~~aF~~la~~~~G 82 (90)
+.+.-+.||+..+-|-| +.=|+.++|.. | +| +.+|.|+|+-|+-. +.||||+.||.+|++..+|
T Consensus 53 ~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-------P---KG-~TTVYVTDlYPegasGaLDLSpNAFakIGnm~qG 121 (232)
T COG4305 53 PSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-------P---KG-KTTVYVTDLYPEGASGALDLSPNAFAKIGNMKQG 121 (232)
T ss_pred CCcceeeecCHHHcccCCchhhhccceEEEEC-------C---CC-ceEEEEecccccccccccccChHHHhhhcchhcC
Confidence 45667999999988865 57899999998 2 45 66899999999877 9999999999999999999
Q ss_pred EEEEEEE
Q 044897 83 IINIDYH 89 (90)
Q Consensus 83 ~v~i~w~ 89 (90)
+|+|+||
T Consensus 122 rIpvqWr 128 (232)
T COG4305 122 RIPVQWR 128 (232)
T ss_pred ccceeEE
Confidence 9999998
No 9
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=99.09 E-value=9.5e-10 Score=71.41 Aligned_cols=65 Identities=25% Similarity=0.509 Sum_probs=49.5
Q ss_pred ceEEEEChhc-cCCCCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCCCceEcCHHHHHhhcC---CCCcEEEE
Q 044897 11 VMIAAAGDAL-WDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCPSTIDLSREAFTQIAN---PVAGIINI 86 (90)
Q Consensus 11 ~~~aAls~~~-~~~g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~~~lDLs~~aF~~la~---~~~G~v~i 86 (90)
-+|.+....- |+ .+.||.|++|++ +|++|.+..+|.-. ..|+|+.+||+.|++ ...|+|++
T Consensus 43 p~IGg~~~V~gWn-S~~CGtC~~lty-----------~g~si~vlaID~a~---~gfnis~~A~n~LT~g~a~~lG~V~a 107 (119)
T PF07249_consen 43 PYIGGAPAVAGWN-SPNCGTCWKLTY-----------NGRSIYVLAIDHAG---GGFNISLDAMNDLTNGQAVELGRVDA 107 (119)
T ss_dssp TSEEEETT--STT--TTTT-EEEEEE-----------TTEEEEEEEEEE-S---SSEEE-HHHHHHHHTS-CCCC-EEE-
T ss_pred CeeccccccccCC-CCCCCCeEEEEE-----------CCeEEEEEEEecCC---CcccchHHHHHHhcCCcccceeEEEE
Confidence 4677777554 65 589999999999 79999999999966 789999999999975 47899999
Q ss_pred EEEC
Q 044897 87 DYHQ 90 (90)
Q Consensus 87 ~w~~ 90 (90)
+|+|
T Consensus 108 ~~~q 111 (119)
T PF07249_consen 108 TYTQ 111 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 10
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.93 E-value=1.1e-08 Score=71.73 Aligned_cols=73 Identities=23% Similarity=0.144 Sum_probs=58.4
Q ss_pred CCCCccCCCceEEEEChhccCCCCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCC-CceEcCHHHHHhhcCCC
Q 044897 2 ACFGNNGQGVMIAAAGDALWDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCP-STIDLSREAFTQIANPV 80 (90)
Q Consensus 2 ACg~~~~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~-~~lDLs~~aF~~la~~~ 80 (90)
|.|..+....|+||=. .-..|..++|++.. +|++|+|+|.|++|-=+ +.||||+.|+++|+-..
T Consensus 16 AnGe~y~~~~~tAAHk------tLPlgT~V~VtNl~---------ngrsviVrVnDRGPf~~gRiIDLS~aAA~~Lg~~~ 80 (208)
T TIGR00413 16 ANGEVYNMKALTAAHK------TLPFNTYVKVTNLH---------NNRSVIVRINDRGPFSDDRIIDLSHAAAREIGLIS 80 (208)
T ss_pred CCCeecCCCccccccc------cCCCCCEEEEEECC---------CCCEEEEEEeCCCCCCCCCEEECCHHHHHHcCCCc
Confidence 3334333445555544 24689999999975 79999999999999877 99999999999999999
Q ss_pred CcEEEEEEE
Q 044897 81 AGIINIDYH 89 (90)
Q Consensus 81 ~G~v~i~w~ 89 (90)
.|+.+|+.+
T Consensus 81 ~G~a~V~ve 89 (208)
T TIGR00413 81 RGVGQVRIE 89 (208)
T ss_pred CceEEEEEE
Confidence 999888764
No 11
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=4.7e-08 Score=69.63 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=49.4
Q ss_pred cCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCC-CceEcCHHHHHhhcCCCCcEEEEEEE
Q 044897 26 VCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCP-STIDLSREAFTQIANPVAGIINIDYH 89 (90)
Q Consensus 26 ~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~-~~lDLs~~aF~~la~~~~G~v~i~w~ 89 (90)
.-|..++||++. ||++|+|+|.|++|-=. +.||||..|+++|+....|+.+|+.+
T Consensus 118 P~~t~v~VtNl~---------NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~~~~~G~a~V~i~ 173 (233)
T COG0797 118 PLPTYVRVTNLD---------NGRSVVVRINDRGPFVSGRIIDLSKAAADKLGMIRSGVAKVRIE 173 (233)
T ss_pred CCCCEEEEEEcc---------CCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhCCccCceEEEEEE
Confidence 578999999987 89999999999999766 89999999999999999998776654
No 12
>PRK10672 rare lipoprotein A; Provisional
Probab=98.62 E-value=3.7e-07 Score=68.65 Aligned_cols=55 Identities=27% Similarity=0.321 Sum_probs=49.1
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCC-CceEcCHHHHHhhcCCCCcEEEEEE
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCP-STIDLSREAFTQIANPVAGIINIDY 88 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~-~~lDLs~~aF~~la~~~~G~v~i~w 88 (90)
-.-|..++||++. ||++|+|+|.|++|-=+ +.||||+.|+++|+-...+.|.|+.
T Consensus 113 LPlps~vrVtNl~---------ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg~~~~~~V~ve~ 168 (361)
T PRK10672 113 LPIPSYVRVTNLA---------NGRMIVVRINDRGPYGPGRVIDLSRAAADRLNTSNNTKVRIDP 168 (361)
T ss_pred CCCCCEEEEEECC---------CCcEEEEEEeCCCCCCCCCeeEcCHHHHHHhCCCCCceEEEEE
Confidence 3588999999976 89999999999999777 9999999999999987778888764
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=96.17 E-value=0.0074 Score=42.45 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=30.1
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCC-CceEcCHHH
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCP-STIDLSREA 72 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~-~~lDLs~~a 72 (90)
..|++||+++-++.. -+||+.+|+|++.--.=. +||||....
T Consensus 82 ~~Cc~Cy~LtFt~g~------l~GKkmiVQ~tNtG~dlg~n~FDl~iPG 124 (201)
T PF02015_consen 82 SWCCACYELTFTSGP------LKGKKMIVQVTNTGGDLGSNQFDLAIPG 124 (201)
T ss_dssp HHTT-EEEEEE-SST------TTT-EEEEEEEEE-TTTTTTEEEEE-TT
T ss_pred CcccceEEEEEcCCC------cCCCEeEEEecccCCCCCCCeEEEEeCC
Confidence 579999999998632 269999999999877656 899998653
No 14
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=58.96 E-value=49 Score=26.48 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=37.3
Q ss_pred CCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCC-CCceEcCHHHHHhhcCCCCcEEEE
Q 044897 24 GAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGC-PSTIDLSREAFTQIANPVAGIINI 86 (90)
Q Consensus 24 g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C-~~~lDLs~~aF~~la~~~~G~v~i 86 (90)
|-.=+..++|+. +++++++.|++.=.-= ++.+-||..+|++|.-.+.-.|.|
T Consensus 26 g~~~~~rv~v~~-----------~~~~~~a~~~~~~~~~~~~~~gl~~~~~~~l~~~~g~~v~v 78 (493)
T TIGR02645 26 GFTPQDRVEVRI-----------GGKSLIAILVGSDTLVEMGEIGLSVSAVETFMAREGDIVTV 78 (493)
T ss_pred CCCcCCeEEEEe-----------CCEEEEEEEecccccccCCeeeccHHHHHHcCCCCCCEEEE
Confidence 555688999997 6889999888642112 288999999999996444334544
No 15
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=55.54 E-value=8.1 Score=22.24 Aligned_cols=37 Identities=22% Similarity=0.542 Sum_probs=30.1
Q ss_pred EEEEecCCCCCC------CceEcCHHHHHhhcC--CCCcEEEEEE
Q 044897 52 TVKIVDHCPGCP------STIDLSREAFTQIAN--PVAGIINIDY 88 (90)
Q Consensus 52 ~v~VvD~Cp~C~------~~lDLs~~aF~~la~--~~~G~v~i~w 88 (90)
.+++.+.|.-|. ..|.|++-.|.+++. .-.|+..-+|
T Consensus 17 ~~r~~nRC~~tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW 61 (61)
T PRK08061 17 KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 (61)
T ss_pred CcccceeeecCCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence 478889999877 678999999999974 4578877766
No 16
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.75 E-value=6.9 Score=22.88 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=24.3
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCC--CceEcCHHHHH
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCP--STIDLSREAFT 74 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~--~~lDLs~~aF~ 74 (90)
=.||..++|+-.+-. +|.. |-.||+|. -.++-.+.-|.
T Consensus 25 CpCGDrf~It~edL~-------~ge~-----Va~CpsCSL~I~ViYd~edf~ 64 (67)
T KOG2923|consen 25 CPCGDRFQITLEDLE-------NGED-----VARCPSCSLIIRVIYDKEDFA 64 (67)
T ss_pred CCCCCeeeecHHHHh-------CCCe-----eecCCCceEEEEEEeCHHHhh
Confidence 379999999975421 3544 34689888 45555555544
No 17
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=46.56 E-value=12 Score=21.67 Aligned_cols=34 Identities=26% Similarity=0.753 Sum_probs=22.7
Q ss_pred hhccCCCCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCC
Q 044897 18 DALWDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCP 63 (90)
Q Consensus 18 ~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~ 63 (90)
..+|-.--.||..++|.-.+-. +| .+|-+||+|.
T Consensus 18 ~~~ftyPCPCGDRFeIsLeDl~-------~G-----E~VArCPSCS 51 (67)
T COG5216 18 EKTFTYPCPCGDRFEISLEDLR-------NG-----EVVARCPSCS 51 (67)
T ss_pred CceEEecCCCCCEeEEEHHHhh-------CC-----ceEEEcCCce
Confidence 3445555689999999985421 34 3456799887
No 18
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=40.20 E-value=49 Score=17.24 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=23.7
Q ss_pred EEEEecCCCCCC-CceEcCHHHHHhhcCCCCcEEEEEE
Q 044897 52 TVKIVDHCPGCP-STIDLSREAFTQIANPVAGIINIDY 88 (90)
Q Consensus 52 ~v~VvD~Cp~C~-~~lDLs~~aF~~la~~~~G~v~i~w 88 (90)
.+.|.+.=.+|. -..+++.. .|.+.+.|.|.|+|
T Consensus 11 ~L~I~~v~tsCgCt~~~~~~~---~i~PGes~~i~v~y 45 (45)
T PF07610_consen 11 PLVITDVQTSCGCTTAEYSKK---PIAPGESGKIKVTY 45 (45)
T ss_pred cEEEEEeeEccCCEEeeCCcc---eECCCCEEEEEEEC
Confidence 455666667777 66666663 37777888888876
No 19
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=35.03 E-value=22 Score=20.43 Aligned_cols=39 Identities=18% Similarity=0.445 Sum_probs=31.1
Q ss_pred eEEEEEecCCCCCC------CceEcCHHHHHhhcCC--CCcEEEEEE
Q 044897 50 SVTVKIVDHCPGCP------STIDLSREAFTQIANP--VAGIINIDY 88 (90)
Q Consensus 50 sv~v~VvD~Cp~C~------~~lDLs~~aF~~la~~--~~G~v~i~w 88 (90)
+-.++..+.|.-|. ..|-|+.-.|.++|.. -.|+.+-+|
T Consensus 15 ~~~~r~~nRC~~cGRprg~~Rkf~lcR~cfRE~A~~g~ipGv~K~sW 61 (61)
T COG0199 15 KSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKASW 61 (61)
T ss_pred CccccccccccccCCCccchhhhhhHHHHHHHHhhccCCCCeEeccC
Confidence 44567788999887 5799999999999853 468877776
No 20
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=34.21 E-value=1.9e+02 Score=23.32 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCC-C-CCceEcCHHHHHhhcCCCCcEEEE
Q 044897 24 GAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPG-C-PSTIDLSREAFTQIANPVAGIINI 86 (90)
Q Consensus 24 g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~-C-~~~lDLs~~aF~~la~~~~G~v~i 86 (90)
|-.=+..++|+. +++++++++.-. .. = ++.+-||..+|++|.-.+.-.|.|
T Consensus 27 g~~~~~rv~v~~-----------~~~~~~a~~~~~-~~~~~~g~~gls~~~~~~l~~~~g~~v~v 79 (500)
T TIGR03327 27 GVHPGDRVRIES-----------GGKSVVGIVDST-DTLVEKGEIGLSHEVLEELGISEGEVVEV 79 (500)
T ss_pred CCCCCCeEEEEe-----------CCEEEEEEEEcc-cccccCCeeeccHHHHHHcCCCCCCEEEE
Confidence 444567899997 677887666544 21 1 188999999999997544444544
No 21
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=33.70 E-value=87 Score=19.37 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=20.6
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecC
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDH 58 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~ 58 (90)
..=|.-++|++.+ +|+.+.++|++.
T Consensus 93 g~~G~~I~V~N~~---------s~k~i~~~V~~~ 117 (122)
T TIGR03170 93 GAVGDQIRVRNLS---------SGKIISGIVTGP 117 (122)
T ss_pred cCCCCEEEEEECC---------CCCEEEEEEeCC
Confidence 4568999999865 699999999874
No 22
>PRK04350 thymidine phosphorylase; Provisional
Probab=33.35 E-value=1.9e+02 Score=23.16 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=32.9
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCC-C-CCceEcCHHHHHhhcCCCCcEEEE
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPG-C-PSTIDLSREAFTQIANPVAGIINI 86 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~-C-~~~lDLs~~aF~~la~~~~G~v~i 86 (90)
-.=+..++|+. +++++++++.=.=.+ = ++.+-||..+|++|.-...-.|.|
T Consensus 21 ~~~~~rv~v~~-----------~~~~~~a~~~~~~~~~~~~~~~gl~~~~~~~l~~~~g~~v~v 73 (490)
T PRK04350 21 FHAGDRVEVRA-----------GGRSIIATLNITDDDLVGPGEIGLSESAFRRLGVSEGDEVEV 73 (490)
T ss_pred CCcCCeEEEEc-----------CCeEEEEEEEeccccccCCCcccccHHHHHHhCCCCCCeEEE
Confidence 34477899997 577776554333221 1 288999999999997544444444
No 23
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.24 E-value=43 Score=16.87 Aligned_cols=15 Identities=20% Similarity=0.815 Sum_probs=12.4
Q ss_pred CCCCCCCceEcCHHH
Q 044897 58 HCPGCPSTIDLSREA 72 (90)
Q Consensus 58 ~Cp~C~~~lDLs~~a 72 (90)
.||.|...+.|+.+.
T Consensus 4 ~CP~C~~~f~v~~~~ 18 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDK 18 (37)
T ss_pred ECCCCCceEEcCHHH
Confidence 589999888888875
No 24
>PF15514 ThaI: Restriction endonuclease ThaI; PDB: 3NDH_B.
Probab=30.57 E-value=63 Score=22.23 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=18.4
Q ss_pred CceEcCHHHHHhh-cCCCCcEEEEEEEC
Q 044897 64 STIDLSREAFTQI-ANPVAGIINIDYHQ 90 (90)
Q Consensus 64 ~~lDLs~~aF~~l-a~~~~G~v~i~w~~ 90 (90)
+.+.+|..|...+ ++.+.=+++|+|++
T Consensus 158 RGVEiSn~Al~e~i~~~~TmsI~IeWkk 185 (202)
T PF15514_consen 158 RGVEISNLALLECIAHKDTMSIPIEWKK 185 (202)
T ss_dssp -SEEE-HHHHHHHHHSTT-EEEEEE---
T ss_pred CceeccHHHHHHHhccccceEEEEEeee
Confidence 8899999998887 67777789999985
No 25
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=27.94 E-value=1.1e+02 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=20.5
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecC
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDH 58 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~ 58 (90)
..=|.-++|++.+ +|+.|.++|++.
T Consensus 109 G~~Gd~IrV~N~~---------S~riV~g~V~~~ 133 (141)
T PRK12618 109 GGVGDEIRVMNLS---------SRTTVSGRIAAD 133 (141)
T ss_pred CCCCCEEEEEECC---------CCCEEEEEEecC
Confidence 4568999999865 699999999875
No 26
>PRK06911 rpsN 30S ribosomal protein S14; Reviewed
Probab=27.04 E-value=42 Score=21.02 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=31.9
Q ss_pred CeEEEEEecCCCCCC------CceEcCHHHHHhhcC--CCCcEEEEEE
Q 044897 49 ESVTVKIVDHCPGCP------STIDLSREAFTQIAN--PVAGIINIDY 88 (90)
Q Consensus 49 ~sv~v~VvD~Cp~C~------~~lDLs~~aF~~la~--~~~G~v~i~w 88 (90)
.+--+++.+.|.-.. ..|-||.-.|..+|. .=+|+..-+|
T Consensus 53 nss~~R~rNRC~~TGR~Rgv~r~FgLsRi~~Rela~~G~lPGv~KaSW 100 (100)
T PRK06911 53 NSNPVRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100 (100)
T ss_pred ccCcchhhcccCCCCCCcccccccCchHHHHHHHHHcCCCCCeecccC
Confidence 455788899999544 789999999999874 5578887777
No 27
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=25.11 E-value=38 Score=17.30 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=14.1
Q ss_pred EEEecCCCCCC-CceEcCHHHHHhh
Q 044897 53 VKIVDHCPGCP-STIDLSREAFTQI 76 (90)
Q Consensus 53 v~VvD~Cp~C~-~~lDLs~~aF~~l 76 (90)
-..+|.|+.|. -.||. .-|++|
T Consensus 16 ~~~id~C~~C~G~W~d~--~el~~~ 38 (41)
T PF13453_consen 16 DVEIDVCPSCGGIWFDA--GELEKL 38 (41)
T ss_pred CEEEEECCCCCeEEccH--HHHHHH
Confidence 36778999998 55653 344444
No 28
>PF13144 SAF_2: SAF-like
Probab=23.56 E-value=1.5e+02 Score=19.84 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.9
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecC
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDH 58 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~ 58 (90)
..=|.-++|++.+ +|+.+.++|++.
T Consensus 167 G~~G~~I~V~N~~---------S~k~v~g~V~~~ 191 (196)
T PF13144_consen 167 GALGDTIRVKNLS---------SGKIVQGRVIGP 191 (196)
T ss_pred CCCCCEEEEEECC---------CCCEEEEEEecC
Confidence 4679999999965 589999999875
No 29
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.97 E-value=41 Score=21.74 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=24.7
Q ss_pred CCCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCCCceEcCH
Q 044897 23 NGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCPSTIDLSR 70 (90)
Q Consensus 23 ~g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~~~lDLs~ 70 (90)
-|-...+-++|+|. .|...+-..-=+|.|+-|+..+-|.+
T Consensus 60 IGmlStkav~V~CP--------~C~K~TKmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 60 IGMLSTKAVQVECP--------NCGKQTKMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred hhhhcccceeeECC--------CCCChHhhhchhhccCcCCCcCccCc
Confidence 35667777899983 34433333333499999994444443
No 30
>PHA02945 interferon resistance protein; Provisional
Probab=22.88 E-value=91 Score=19.23 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=16.5
Q ss_pred CCCeEEEEEecCCCCCC-CceEcCH
Q 044897 47 TGESVTVKIVDHCPGCP-STIDLSR 70 (90)
Q Consensus 47 ~g~sv~v~VvD~Cp~C~-~~lDLs~ 70 (90)
.|+.++++|...=+ . +++|||.
T Consensus 59 ~GqkvV~KVirVd~--~kg~IDlSl 81 (88)
T PHA02945 59 VGKTVKVKVIRVDY--TKGYIDVNY 81 (88)
T ss_pred cCCEEEEEEEEECC--CCCEEEeEe
Confidence 48888888876644 3 7899974
No 31
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.67 E-value=1.7e+02 Score=20.61 Aligned_cols=55 Identities=16% Similarity=0.373 Sum_probs=39.3
Q ss_pred cCCCCcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCCC-----------ceEcCHHHHHhhcC
Q 044897 21 WDNGAVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCPS-----------TIDLSREAFTQIAN 78 (90)
Q Consensus 21 ~~~g~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~~-----------~lDLs~~aF~~la~ 78 (90)
+..-..||.--..+|.+...-+. +||.+.|=..=+|-.|++ -=|++|..+++|-.
T Consensus 17 ~k~C~~Cg~kr~f~cSg~fRvNA---q~K~LDvWlIYkC~~Cd~tWN~~IfeR~~~~~Iep~lleal~~ 82 (203)
T COG4332 17 AKRCNSCGVKRAFTCSGKFRVNA---QGKVLDVWLIYKCTHCDYTWNISIFERLNVSDIEPDLLEALMA 82 (203)
T ss_pred hhhCcccCCcceeeecCcEEEcC---CCcEEEEEEEEEeeccCCccchhhhhccCcccCCHHHHHHHHc
Confidence 34456788888888866432223 689999999999999982 23777888877743
No 32
>CHL00074 rps14 ribosomal protein S14
Probab=22.52 E-value=31 Score=21.57 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=31.6
Q ss_pred CeEEEEEecCCCCCC------CceEcCHHHHHhhcC--CCCcEEEEEE
Q 044897 49 ESVTVKIVDHCPGCP------STIDLSREAFTQIAN--PVAGIINIDY 88 (90)
Q Consensus 49 ~sv~v~VvD~Cp~C~------~~lDLs~~aF~~la~--~~~G~v~i~w 88 (90)
.+--++|.+.|.-+. ..|-||.-.|..++. .=+|+..-+|
T Consensus 53 ~ss~tRi~NRC~~TGR~Rgv~r~F~LsRi~~Re~a~~G~ipGv~KaSW 100 (100)
T CHL00074 53 NSAPTRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100 (100)
T ss_pred ccchHHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCcccccC
Confidence 455678889999554 789999999999974 4578877776
No 33
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=21.61 E-value=44 Score=19.46 Aligned_cols=13 Identities=31% Similarity=1.068 Sum_probs=7.4
Q ss_pred EEecCCCCCC-Cce
Q 044897 54 KIVDHCPGCP-STI 66 (90)
Q Consensus 54 ~VvD~Cp~C~-~~l 66 (90)
+|.=+||+|. .|+
T Consensus 27 vViv~C~gC~~~Hl 40 (66)
T PF05180_consen 27 VVIVQCPGCKNRHL 40 (66)
T ss_dssp EEEEE-TTS--EEE
T ss_pred eEEEECCCCcceee
Confidence 4666899999 443
No 34
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=21.25 E-value=1.8e+02 Score=19.41 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=20.4
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecC
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDH 58 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~ 58 (90)
..=|.-++|++.. +|+.|.++|.+.
T Consensus 128 G~~Gd~IrVrN~~---------Sgkiv~g~V~~~ 152 (160)
T PRK06005 128 GAAGDLIRVRNVD---------SGVIVSGTVLAD 152 (160)
T ss_pred CCCCCEEEEEECC---------CCCEEEEEEecC
Confidence 4568999999865 689999998875
No 35
>PRK06804 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=21.20 E-value=1.7e+02 Score=21.35 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=20.7
Q ss_pred CcCCCeEEEEEcCCCCCCCCCCCCCeEEEEEecC
Q 044897 25 AVCGKMFNVKCTGARNAVPHPCTGESVTVKIVDH 58 (90)
Q Consensus 25 ~~CG~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~ 58 (90)
..=|.-++|++.. +|+.|.++|++.
T Consensus 230 G~~Gd~IrVrN~~---------SgkvV~a~V~~~ 254 (261)
T PRK06804 230 GRKGELIKVKNLS---------SGRVVTATVDGS 254 (261)
T ss_pred CCCCCEEEEEECC---------CCCEEEEEEecC
Confidence 4569999999865 699999999875
No 36
>PRK08881 rpsN 30S ribosomal protein S14; Reviewed
Probab=20.88 E-value=40 Score=21.07 Aligned_cols=40 Identities=18% Similarity=0.434 Sum_probs=31.4
Q ss_pred CeEEEEEecCCCCCC------CceEcCHHHHHhhcC--CCCcEEEEEE
Q 044897 49 ESVTVKIVDHCPGCP------STIDLSREAFTQIAN--PVAGIINIDY 88 (90)
Q Consensus 49 ~sv~v~VvD~Cp~C~------~~lDLs~~aF~~la~--~~~G~v~i~w 88 (90)
.+--++|.+.|.-.. ..|-||.-.|.++|. .=+|+..-+|
T Consensus 54 ~ss~tRi~NRC~~TGR~Rgv~r~F~LsRi~fRela~~G~lpGv~KsSW 101 (101)
T PRK08881 54 NSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101 (101)
T ss_pred ccchHHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCeecccC
Confidence 355678888998544 789999999999974 4578887776
No 37
>PRK02935 hypothetical protein; Provisional
Probab=20.26 E-value=62 Score=20.76 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCCCCCCCCCCCeEEEEEecCCCCCCCceEcC
Q 044897 29 KMFNVKCTGARNAVPHPCTGESVTVKIVDHCPGCPSTIDLS 69 (90)
Q Consensus 29 ~c~~v~~~~~~~~~~~~c~g~sv~v~VvD~Cp~C~~~lDLs 69 (90)
+-++|.| |.|...+-..-=+|.|+-|+.-+-|.
T Consensus 67 kavqV~C--------P~C~K~TKmLGrvD~CM~C~~PLTLd 99 (110)
T PRK02935 67 KAVQVIC--------PSCEKPTKMLGRVDACMHCNQPLTLD 99 (110)
T ss_pred cceeeEC--------CCCCchhhhccceeecCcCCCcCCcC
Confidence 4466776 23544444455579999999444333
No 38
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=20.09 E-value=68 Score=27.46 Aligned_cols=19 Identities=26% Similarity=0.685 Sum_probs=17.0
Q ss_pred ChhccCCCCcCCCeEEEEE
Q 044897 17 GDALWDNGAVCGKMFNVKC 35 (90)
Q Consensus 17 s~~~~~~g~~CG~c~~v~~ 35 (90)
-+++|..|.+||-|.||.+
T Consensus 187 ~enfW~~GGpcGPcsEi~~ 205 (900)
T PRK13902 187 KESWWEGGGNAGPCFEVLV 205 (900)
T ss_pred cccccCCCCCCCCceeeee
Confidence 4678999999999999998
Done!