BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044898
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 136/294 (46%), Gaps = 28/294 (9%)
Query: 24 ILDPVDFLALQAIRKSLDDLPGSNFFASWDFTSDPCN--FAGVYCDAD----KVIALNLG 77
+ +P D AL I+K DL +SW T+D CN + GV CD D +V L+L
Sbjct: 2 LCNPQDKQALLQIKK---DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 78 DPRAGSPGLTGRLDPAIGKLTSLAELSIVP----GRVIGKLPQSLSQLKNLRFFAISRNF 133
P P L +L L+ + ++G +P ++++L L + I+
Sbjct: 59 GLNLPKP------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112
Query: 134 VSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPP---FL 190
VSG IP L Q++ L TLD SYN L+G +P SI +LP L + N++SG++P
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 191 SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250
S T + + N L+G + P ++ ++ LS N L G L + L+ N
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 251 FNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVT----IPTVDLSHNMLSGQI 300
++ + + L L+ N G + P +T + ++++S N L G+I
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTL--PQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 203 DLSGSLAPDSLP--------PSVQYLSLSW-NRLSGPVDRLLSRLDQLNYLDLSLNQFNG 253
DLSG P P P + +L + N L GP+ +++L QL+YL ++ +G
Sbjct: 56 DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 254 NIPGRIFTFP-ITNLQLQRNAFAGPVQPPDQVTIPT---VDLSHNMLSGQISPSFSTVQN 309
IP + + L NA +G + PP ++P + N +SG I S+ +
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 310 LY----LNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTG 346
L+ ++ NR TG++P +F + ++ + L N L G
Sbjct: 175 LFTSMTISRNRLTGKIPPTFA----NLNLAFVDLSRNMLEG 211
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 34/228 (14%)
Query: 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQL 158
+L EL + GK+P +LS L +S N++SG IP++LG L LR L L N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 159 TGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQ 218
G IPQ + + L +IL N L+G +P LS+ ++
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC---------------------TNLN 493
Query: 219 YLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGP 277
++SLS NRL+G + + + RL+ L L LS N F+GNIP + + L L N F G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG- 552
Query: 278 VQPPDQVTIPTVDLSHNMLSGQISPSF-STVQNLYLNNNRFTGQVPGS 324
TIP SG+I+ +F + + +Y+ N+ + G+
Sbjct: 553 -------TIPAAMFKQ---SGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 157/348 (45%), Gaps = 54/348 (15%)
Query: 41 DDLPGSNFFASWDFTSDPCNFAGVYCDADKVIALNLGDP--RAGSPGLTGRLDPAIGKLT 98
D LP N W +PC F GV C DKV +++L G ++ L G +
Sbjct: 22 DVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81
Query: 99 SLAELSIVPGRVIG-KLPQSLSQL--------------------KNLRFFAISRNFVS-- 135
S + G V G K SL+ L L+F +S N +
Sbjct: 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 136 GEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTL-----PELSNVILCHNKLSGSVPPFL 190
G++ L +L L LDLS N ++GA +G + EL ++ + NK+SG V
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198
Query: 191 SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250
L LD+ N+ S + ++Q+L +S N+LSG R +S +L L++S NQ
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 251 FNGNIPGRIFTFPITNLQ---LQRNAFAGPVQPPDQV-----TIPTVDLSHNMLSGQISP 302
F G IP P+ +LQ L N F G + PD + T+ +DLS N G + P
Sbjct: 259 FVGPIP----PLPLKSLQYLSLAENKFTGEI--PDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 303 SFS---TVQNLYLNNNRFTGQVPGSFVDHLLDA-SIQILYLQHNFLTG 346
F +++L L++N F+G++P +D LL +++L L N +G
Sbjct: 313 FFGSCSLLESLALSSNNFSGELP---MDTLLKMRGLKVLDLSFNEFSG 357
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 100 LAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLT 159
L L+I ++ G + +S+ NL F +S N S IP LG L+ LD+S N+L+
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236
Query: 160 GAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQY 219
G ++I T EL + + N+ G +PP +L L L N +G + PD L +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI-PDFLSGACDT 295
Query: 220 LS---LSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIF--TFPITNLQLQRNAF 274
L+ LS N G V L L LS N F+G +P + L L N F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 275 AGPVQPPDQVT-----IPTVDLSHNMLSGQISPSF-----STVQNLYLNNNRFTGQVPGS 324
+G + P+ +T + T+DLS N SG I P+ +T+Q LYL NN FTG++P +
Sbjct: 356 SGEL--PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 325 FVDHLLDASIQILYLQHNFLTG 346
+ + + L+L N+L+G
Sbjct: 414 LSNC---SELVSLHLSFNYLSG 432
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 125/314 (39%), Gaps = 76/314 (24%)
Query: 85 GLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQ 144
G TG++ P + + L L + + G +P SL L LR + N + GEIP L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 145 LRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDL 204
++ L TL L +N LTG IP + L+ + L +N+L+G +P ++ RL+
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG----RLE------ 514
Query: 205 SGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFP- 263
++ L LS N SG + L L +LDL+ N FNG IP +F
Sbjct: 515 -----------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 264 -----------------------------------ITNLQLQRNAFAGPVQPPDQV---- 284
I + QL R + P +V
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 285 TIPT---------VDLSHNMLSGQISPSFSTVQNLY---LNNNRFTGQVPGSFVDHLLDA 332
T PT +D+S+NMLSG I ++ L+ L +N +G +P D
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL---R 680
Query: 333 SIQILYLQHNFLTG 346
+ IL L N L G
Sbjct: 681 GLNILDLSSNKLDG 694
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%)
Query: 88 GRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRG 147
G P S+ L + + G +P+ + + L + N +SG IP +G LRG
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 148 LRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVP 187
L LDLS N+L G IPQ++ L L+ + L +N LSG +P
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 23/115 (20%)
Query: 151 LDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAP 210
LD+SYN L+G IP+ IG++P L + L HN +SGS+P + DL G
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-----------EVGDLRG---- 681
Query: 211 DSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIP--GRIFTFP 263
+ L LS N+L G + + +S L L +DLS N +G IP G+ TFP
Sbjct: 682 ------LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 124 LRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS 183
+ F +S N +SG IP +G + L L+L +N ++G+IP +G L L+ + L NKL
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 184 GSVPPFLSH--ALTRLDLKHNDLSG 206
G +P +S LT +DL +N+LSG
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 86 LTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQL 145
L+G + IG + L L++ + G +P + L+ L +S N + G IP A+ L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 146 RGLRTLDLSYNQLTGAIPQ 164
L +DLS N L+G IP+
Sbjct: 704 TMLTEIDLSNNNLSGPIPE 722
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 82 GSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAA 141
G ++G + +G L L L + ++ G++PQ++S L L +S N +SG IP
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-E 722
Query: 142 LGQLR 146
+GQ
Sbjct: 723 MGQFE 727
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 34/228 (14%)
Query: 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQL 158
+L EL + GK+P +LS L +S N++SG IP++LG L LR L L N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 159 TGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQ 218
G IPQ + + L +IL N L+G +P LS+ ++
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC---------------------TNLN 490
Query: 219 YLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGP 277
++SLS NRL+G + + + RL+ L L LS N F+GNIP + + L L N F G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG- 549
Query: 278 VQPPDQVTIPTVDLSHNMLSGQISPSF-STVQNLYLNNNRFTGQVPGS 324
TIP SG+I+ +F + + +Y+ N+ + G+
Sbjct: 550 -------TIPAAMFKQ---SGKIAANFIAGKRYVYIKNDGMKKECHGA 587
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 157/348 (45%), Gaps = 54/348 (15%)
Query: 41 DDLPGSNFFASWDFTSDPCNFAGVYCDADKVIALNLGDP--RAGSPGLTGRLDPAIGKLT 98
D LP N W +PC F GV C DKV +++L G ++ L G +
Sbjct: 19 DVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 78
Query: 99 SLAELSIVPGRVIG-KLPQSLSQL--------------------KNLRFFAISRNFVS-- 135
S + G V G K SL+ L L+F +S N +
Sbjct: 79 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 136 GEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTL-----PELSNVILCHNKLSGSVPPFL 190
G++ L +L L LDLS N ++GA +G + EL ++ + NK+SG V
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSR 195
Query: 191 SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250
L LD+ N+ S + ++Q+L +S N+LSG R +S +L L++S NQ
Sbjct: 196 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 251 FNGNIPGRIFTFPITNLQ---LQRNAFAGPVQPPDQV-----TIPTVDLSHNMLSGQISP 302
F G IP P+ +LQ L N F G + PD + T+ +DLS N G + P
Sbjct: 256 FVGPIP----PLPLKSLQYLSLAENKFTGEI--PDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 303 SFS---TVQNLYLNNNRFTGQVPGSFVDHLLDA-SIQILYLQHNFLTG 346
F +++L L++N F+G++P +D LL +++L L N +G
Sbjct: 310 FFGSCSLLESLALSSNNFSGELP---MDTLLKMRGLKVLDLSFNEFSG 354
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 60/280 (21%)
Query: 100 LAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLT 159
L L+I ++ G + +S+ NL F +S N S IP LG L+ LD+S N+L+
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 160 GAIPQSIGTLPEL------SN----------------VILCHNKLSGSVPPFLSHA---L 194
G ++I T EL SN + L NK +G +P FLS A L
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 195 TRLDLKHNDLSGSLAP-DSLPPSVQYLSLSWNRLSG--PVDRLLSRLDQLNYLDLSLNQF 251
T LDL N G++ P ++ L+LS N SG P+D LL ++ L LDLS N+F
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEF 352
Query: 252 NGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSF-----ST 306
+G +P +TNL ++ T+DLS N SG I P+ +T
Sbjct: 353 SGELPES-----LTNL---------------SASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 307 VQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTG 346
+Q LYL NN FTG++P + + + + L+L N+L+G
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNC---SELVSLHLSFNYLSG 429
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 125/314 (39%), Gaps = 76/314 (24%)
Query: 85 GLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQ 144
G TG++ P + + L L + + G +P SL L LR + N + GEIP L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 145 LRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDL 204
++ L TL L +N LTG IP + L+ + L +N+L+G +P ++ RL+
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG----RLE------ 511
Query: 205 SGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFP- 263
++ L LS N SG + L L +LDL+ N FNG IP +F
Sbjct: 512 -----------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 264 -----------------------------------ITNLQLQRNAFAGPVQPPDQV---- 284
I + QL R + P +V
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 285 TIPT---------VDLSHNMLSGQISPSFSTVQNLY---LNNNRFTGQVPGSFVDHLLDA 332
T PT +D+S+NMLSG I ++ L+ L +N +G +P D
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL---R 677
Query: 333 SIQILYLQHNFLTG 346
+ IL L N L G
Sbjct: 678 GLNILDLSSNKLDG 691
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%)
Query: 88 GRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRG 147
G P S+ L + + G +P+ + + L + N +SG IP +G LRG
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 148 LRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVP 187
L LDLS N+L G IPQ++ L L+ + L +N LSG +P
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 23/115 (20%)
Query: 151 LDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAP 210
LD+SYN L+G IP+ IG++P L + L HN +SGS+P + DL G
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-----------EVGDLRG---- 678
Query: 211 DSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIP--GRIFTFP 263
+ L LS N+L G + + +S L L +DLS N +G IP G+ TFP
Sbjct: 679 ------LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 727
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 124 LRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS 183
+ F +S N +SG IP +G + L L+L +N ++G+IP +G L L+ + L NKL
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 184 GSVPPFLSH--ALTRLDLKHNDLSG 206
G +P +S LT +DL +N+LSG
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 86 LTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQL 145
L+G + IG + L L++ + G +P + L+ L +S N + G IP A+ L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 146 RGLRTLDLSYNQLTGAIPQ 164
L +DLS N L+G IP+
Sbjct: 701 TMLTEIDLSNNNLSGPIPE 719
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 82 GSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAA 141
G ++G + +G L L L + ++ G++PQ++S L L +S N +SG IP
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-E 719
Query: 142 LGQLR 146
+GQ
Sbjct: 720 MGQFE 724
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 49/237 (20%)
Query: 151 LDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS----GSVPPFLSHALTRLDLKHNDLSG 206
LDL N++T L L +IL +NK+S G+ P + L RL L N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK--LERLYLSKNQLKE 114
Query: 207 SLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQF------NGNIPG--- 257
P+ +P ++Q L + N ++ + + L+Q+ ++L N NG G
Sbjct: 115 --LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 258 ---------RIFTFP------ITNLQLQRNAFAGPVQPPDQVTIPTVD------LSHNML 296
I T P +T L L N + D ++ ++ LS N +
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNK----ITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 297 SGQISPSFST---VQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEIN 350
S + S + ++ L+LNNN+ +VPG DH IQ++YL +N ++ I N
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH---KYIQVVYLHNNNISAIGSN 281
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 64 VYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKN 123
V+ +++I + LG S G+ + KL+ + + LP SL++L
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH- 198
Query: 124 LRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS 183
+ N ++ A+L L L L LS+N ++ S+ P L + L +NKL
Sbjct: 199 -----LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 184 GSVPPFLSHALTRLDLKH-NDLSGSLAPDSLPPSVQYLSLSWNRLS 228
H ++ H N++S + D PP S++ +S
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 49/237 (20%)
Query: 151 LDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS----GSVPPFLSHALTRLDLKHNDLSG 206
LDL N++T L L +IL +NK+S G+ P + L RL L N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK--LERLYLSKNQLKE 114
Query: 207 SLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQF------NGNIPG--- 257
P+ +P ++Q L + N ++ + + L+Q+ ++L N NG G
Sbjct: 115 --LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 258 ---------RIFTFP------ITNLQLQRNAFAGPVQPPDQVTIPTVD------LSHNML 296
I T P +T L L N + D ++ ++ LS N +
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNK----ITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 297 SGQISPSFST---VQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEIN 350
S + S + ++ L+LNNN+ +VPG DH IQ++YL +N ++ I N
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH---KYIQVVYLHNNNISAIGSN 281
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 64 VYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKN 123
V+ +++I + LG S G+ + KL+ + + LP SL++L
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH- 198
Query: 124 LRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS 183
+ N ++ A+L L L L LS+N ++ S+ P L + L +NKL
Sbjct: 199 -----LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 184 GSVPPFLSHALTRLDLKH-NDLSGSLAPDSLPPSVQYLSLSWNRLS 228
H ++ H N++S + D PP S++ +S
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 96 KLTSLAELSIVPGRVIGKLPQSL-SQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLS 154
KLT+L EL +V + + LP + +L NL + ++ N + +L L LDLS
Sbjct: 107 KLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 155 YNQLTGAIPQSI-GTLPELSNVILCHNKLSGSVPPFLSHALTRLDLK--HNDLSGSLAPD 211
YNQL ++P+ + L +L ++ L N+L SVP + LT L H++ D
Sbjct: 166 YNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN-----PWD 218
Query: 212 SLPPSVQYLSLSWNRLSGPV 231
P ++YLS N+ SG V
Sbjct: 219 CTCPGIRYLSEWINKHSGVV 238
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 113 KLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPEL 172
K Q + L N+R+ A+ N + +AL +L L L L+ NQL L L
Sbjct: 54 KSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 173 SNVILCHNKLSGSVPPFLSHALTR---LDLKHNDLSGSLAPDSLPPSV-------QYLSL 222
++L N+L S+P + LT L+L HN L SLP V L L
Sbjct: 112 KELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ------SLPKGVFDKLTNLTELDL 164
Query: 223 SWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIF 260
S+N+L + + +L QL L L NQ +P +F
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVF 201
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 40/198 (20%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSL-SQLKNLRFFAISRNFVSGEIPAALGQLRGLRTL 151
A+ +LT+L L I+ G + LP + +L NL+ + N + +L L L
Sbjct: 80 ALKELTNLTYL-ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 152 DLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPD 211
+L++NQL ++P+ G +L+N LT LDL +N L
Sbjct: 139 NLAHNQLQ-SLPK--GVFDKLTN-------------------LTELDLSYNQLQ------ 170
Query: 212 SLPPSV-------QYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPI 264
SLP V + L L N+L D + RL L Y+ L N ++ PG +
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
Query: 265 TNLQ--LQRNAFAGPVQP 280
N + RN+ AG V P
Sbjct: 231 INKHSGVVRNS-AGSVAP 247
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 32/271 (11%)
Query: 98 TSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQ 157
+S+ L + G V + LK+L+ ++ N ++ A L L+ L+LSYN
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 158 LTGAIPQSIGTLPELSNVILCHNKLS---GSVPPFLSHALTRLDLKHNDLSGSLAPDSLP 214
L + LP+++ + L N ++ FL L LDL+ N +L
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDN----ALTTIHFI 380
Query: 215 PSVQYLSLSWNRL-SGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQ---LQ 270
PS+ + LS N+L + P L + N + LS N+ N+ F + +LQ L
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTA-----NLIHLSENRLE-NLDILYFLLRVPHLQILILN 434
Query: 271 RNAF---AGPVQPPDQVTIPTVDLSHNMLS--------GQISPSFSTVQNLYLNNNRFTG 319
+N F +G P + ++ + L NML + S +Q LYLN+N
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 320 QVPGSFVDHLLDASIQILYLQHNFLTGIEIN 350
PG F HL +++ L L N LT + N
Sbjct: 495 LPPGVF-SHL--TALRGLSLNSNRLTVLSHN 522
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 8/171 (4%)
Query: 116 QSLSQLKNLRFFAISRNFVSGEIPAAL--GQLRGLRTLDLSYNQL-TGAIPQSIGTLPEL 172
Q S LK L+ + RN + AL + L TLD+S N L + A ++ +
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 173 SNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPD-SLPPSVQYLSLSWNRLSGPV 231
+ L N L+GSV L + LDL HN+ S+ D + ++Q L+++ N+L
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 232 DRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQ--LQRNAFAGPVQP 280
D + RL L Y+ L N ++ PG + N + RN+ AG V P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS-AGSVAP 539
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 184 GSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNY 243
GS+ PF + + +D + +L+ P LPP + LSLS N +S +S L +L
Sbjct: 23 GSMTPFSNELESMVDYSNRNLTH--VPKDLPPRTKALSLSQNSISELRMPDISFLSELRV 80
Query: 244 LDLSLNQFNGNIPGRIFTF 262
L LS N+ + +F F
Sbjct: 81 LRLSHNRIRS-LDFHVFLF 98
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLD 152
+ KLT+L L ++ P L L NL +++ N + L L L LD
Sbjct: 189 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 244
Query: 153 LSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS 212
L+ NQ++ P + L +L+ + L N++S P ALT L+L N L ++P S
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-DISPIS 301
Query: 213 LPPSVQYLSLSWNRLS--GPVDRL------------------LSRLDQLNYLDLSLNQFN 252
++ YL+L +N +S PV L L+ L +N+L NQ +
Sbjct: 302 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 361
Query: 253 GNIPGRIFTFPITNLQLQRNAFA-GPVQPPDQVTIP 287
P T IT L L A+ PV V+IP
Sbjct: 362 DLTPLANLT-RITQLGLNDQAWTNAPVNYKANVSIP 396
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLD 152
+ KLT+L L ++ P L L NL +++ N + L L L LD
Sbjct: 190 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 245
Query: 153 LSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS 212
L+ NQ++ P + L +L+ + L N++S P ALT L+L N L ++P S
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-DISPIS 302
Query: 213 LPPSVQYLSLSWNRLS--GPVDRL------------------LSRLDQLNYLDLSLNQFN 252
++ YL+L +N +S PV L L+ L +N+L NQ +
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 362
Query: 253 GNIPGRIFTFPITNLQLQRNAFA-GPVQPPDQVTIP 287
P T IT L L A+ PV V+IP
Sbjct: 363 DLTPLANLT-RITQLGLNDQAWTNAPVNYKANVSIP 397
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLD 152
+ KLT+L L ++ P L L NL +++ N + L L L LD
Sbjct: 190 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 245
Query: 153 LSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS 212
L+ NQ++ P + L +L+ + L N++S P ALT L+L N L ++P S
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-DISPIS 302
Query: 213 LPPSVQYLSLSWNRLS--GPVDRL------------------LSRLDQLNYLDLSLNQFN 252
++ YL+L +N +S PV L L+ L +N+L NQ +
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 362
Query: 253 GNIPGRIFTFPITNLQLQRNAFA-GPVQPPDQVTIP 287
P T IT L L A+ PV V+IP
Sbjct: 363 DLTPLANLT-RITQLGLNDQAWTNAPVNYKANVSIP 397
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLD 152
+ KLT+L L ++ P L L NL +++ N + L L L LD
Sbjct: 189 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 244
Query: 153 LSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS 212
L+ NQ++ P + L +L+ + L N++S P ALT L+L N L ++P S
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-DISPIS 301
Query: 213 LPPSVQYLSLSWNRLS--GPVDRL------------------LSRLDQLNYLDLSLNQFN 252
++ YL+L +N +S PV L L+ L +N+L NQ +
Sbjct: 302 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQIS 361
Query: 253 GNIPGRIFTFPITNLQLQRNAFA-GPVQPPDQVTIP 287
P T IT L L A+ PV V+IP
Sbjct: 362 DLTPLANLT-RITQLGLNDQAWTNAPVNYKANVSIP 396
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 44/212 (20%)
Query: 118 LSQLKNLRFFAISRNFVSGE--IPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLP--ELS 173
L +L+NL+ +S + + L LR L+ L+LSYN+ G Q+ P EL
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 174 NVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDR 233
+V H + PF + L R+ L+LS L
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRV----------------------LNLSHCLLDTSNQH 442
Query: 234 LLSRLDQLNYLDLSLNQF-NGNIPG----------RIFTFPITNL-QLQRNAFAGPVQPP 281
LL+ L L +L+L N F +G+I I NL + + AF G
Sbjct: 443 LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLR--- 499
Query: 282 DQVTIPTVDLSHNMLSGQISPSFSTVQNLYLN 313
+ +DLSHN L+G + S ++ LYLN
Sbjct: 500 ---NVNHLDLSHNSLTGDSMDALSHLKGLYLN 528
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 210 PDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252
PD+LP + + L S+N L + SRL L +LDL+ Q N
Sbjct: 27 PDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQIN 69
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 116 QSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175
Q+ L+N+ +S N ++G+ AL L+GL L+++ N + P + L + S +
Sbjct: 493 QAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQSII 551
Query: 176 ILCHNKL 182
L HN L
Sbjct: 552 NLSHNPL 558
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLD 152
+ KLT+L L ++ P L L NL +++ N + L L L LD
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 249
Query: 153 LSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS 212
L+ NQ++ P + L +L+ + L N++S P ALT L+L N L ++P S
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-DISPIS 306
Query: 213 LPPSVQYLSLSWNRLS--GPVDRL------------------LSRLDQLNYLDLSLNQFN 252
++ YL+L +N +S PV L L+ L +N+L NQ +
Sbjct: 307 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 366
Query: 253 GNIPGRIFTFPITNLQLQRNAFA-GPVQPPDQVTIP 287
P T IT L L A+ PV V+IP
Sbjct: 367 DLTPLANLT-RITQLGLNDQAWTNAPVNYKANVSIP 401
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLD 152
+ KLT+L L ++ P L L NL +++ N + L L L LD
Sbjct: 193 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 248
Query: 153 LSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS 212
L+ NQ++ P + L +L+ + L N++S P ALT L+L N L ++P S
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-DISPIS 305
Query: 213 LPPSVQYLSLSWNRLS--GPVDRL------------------LSRLDQLNYLDLSLNQFN 252
++ YL+L +N +S PV L L+ L +N+L NQ +
Sbjct: 306 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS 365
Query: 253 GNIPGRIFTFPITNLQLQRNAFA-GPVQPPDQVTIP 287
P T IT L L A+ PV V+IP
Sbjct: 366 DLTPLANLT-RITQLGLNDQAWTNAPVNYKANVSIP 400
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLD 152
+ KLT+L L ++ P L L NL +++ N + L L L LD
Sbjct: 190 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 245
Query: 153 LSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS 212
L+ NQ++ P + L +L+ + L N++S P ALT L+L N L ++P S
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-DISPIS 302
Query: 213 LPPSVQYLSLSWNRLS--GPVDRL------------------LSRLDQLNYLDLSLNQFN 252
++ YL+L +N +S PV L L+ L +N+L NQ +
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQIS 362
Query: 253 GNIPGRIFTFPITNLQLQRNAFA-GPVQPPDQVTIP 287
P T IT L L A+ PV V+IP
Sbjct: 363 DLTPLANLT-RITQLGLNDQAWTNAPVNYKANVSIP 397
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
Query: 56 SDPCNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLP 115
DP NF +A V +L + + L T L +L++ +
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSK-----IFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Query: 116 QSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175
+ L +L +S+NF+ L L LDLSYN + QS LP L +
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 176 ILCHNKLSGSVPPFLSHALTRL 197
L N+L SVP + LT L
Sbjct: 377 ALDTNQLK-SVPDGIFDRLTSL 397
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 212 SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSL---------NQFNGNIPGRIFTF 262
LP V Y+ LS N ++ + SRL L +L + N F G I
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 263 PITN-LQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQV 321
LQL+ AF G + + +T+ +L +LSG ++++ L L +N
Sbjct: 87 DYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 322 PGSF 325
P SF
Sbjct: 146 PASF 149
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 118 LSQLKNLRFFAISRNFVSGE--IPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175
L +L NL+ +S N + L L L+TL+LS+N+ G Q+ P+L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL--- 399
Query: 176 ILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLL 235
L A TRL ++ +P +Q L+L++ L LL
Sbjct: 400 ------------ELLDLAFTRL-----HINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLL 442
Query: 236 SRLDQLNYLDLSLNQF-NGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQV-----TIPTV 289
+ L L +L+L N F +G I + +L++ + G + Q + V
Sbjct: 443 AGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHV 502
Query: 290 DLSHNMLSGQISPSFSTVQNLYLN 313
DLSHN L+ S S ++ +YLN
Sbjct: 503 DLSHNSLTCDSIDSLSHLKGIYLN 526
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 203 DLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252
+L S PD+LP + ++L S+N L +R SRL L +LDL+ Q N
Sbjct: 18 NLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQIN 67
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 118 LSQLKNLRFFAISRNFV--SGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLP--ELS 173
L L+NLR +S + + S L L L++L+LSYN+ ++ P EL
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 174 NVILCHNKLSGSVPPFLS-HALTRLDLKHN--DLSGSLAPDSLPPSVQYLSLSWNRL-SG 229
++ K+ + PF + H L L+L H+ D+S D LP ++Q+L+L N G
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKG 464
Query: 230 PVDRL--LSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIP 287
+ + L L +L L LS + I T+L++ +
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSS-----IDQHAFTSLKMMNH--------------- 504
Query: 288 TVDLSHNMLSGQISPSFSTVQNLYLN 313
VDLSHN L+ + S ++ +YLN
Sbjct: 505 -VDLSHNRLTSSSIEALSHLKGIYLN 529
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 39/223 (17%)
Query: 96 KLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSY 155
KLT+L+ + R+ Q+ + L+NL+ +S N ++ L + L ++SY
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQ---LSSNRLTH---VDLSLIPSLFHANVSY 195
Query: 156 NQL-TGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLP 214
N L T AIP ++ L N I N + G V LT L L+HN+L+ + + P
Sbjct: 196 NLLSTLAIPIAVEELDASHNSI---NVVRGPVNV----ELTILKLQHNNLTDTAWLLNYP 248
Query: 215 PSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAF 274
V+ + LS+N L + ++ +L L +S N+ + N +
Sbjct: 249 GLVE-VDLSYNELEKIMYHPFVKMQRLERLYISNNRL-----------------VALNLY 290
Query: 275 AGPVQPPDQVTIPTVDLSHNML--SGQISPSFSTVQNLYLNNN 315
P+ T+ +DLSHN L + P F ++NLYL++N
Sbjct: 291 GQPIP-----TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 117 SLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176
+ L++L +S+N V A L L TL+L N+LT Q+ L +L +
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113
Query: 177 LCHNKLSGSVPPFLSH---ALTRLD---LKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGP 230
L +N + S+P + + +L RLD LK + A + L +++YL+L L
Sbjct: 114 LRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL-VNLRYLNLGMCNLKDI 171
Query: 231 VDRLLSRLDQLNYLDLSLNQFNGNIPG---------RIFTFPITNLQLQRNAFAGPVQPP 281
+ L+ L +L L+LS N+ + PG +++ ++RNAF
Sbjct: 172 PN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAF------D 223
Query: 282 DQVTIPTVDLSHNMLSGQISPSFS---TVQNLYLNNN 315
D ++ ++LSHN L F+ ++ ++LN+N
Sbjct: 224 DLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 31/207 (14%)
Query: 117 SLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176
SL + K L N + G++PA +++ L +L+L+YNQ+T G ++ N+
Sbjct: 325 SLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQITEIPANFCGFTEQVENLS 383
Query: 177 LCHNKLSGSVPPFLSHAL---TRLDLKHNDLSGSLAPDSLPP---------SVQYLSLSW 224
HNKL F + ++ + +D +N++ GS+ + P +V ++LS
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVSSINLSN 442
Query: 225 NRLSGPVDRLLSRLDQLNYLDL-----------SLNQFNGNIPGRIFTFPITNLQLQRNA 273
N++S L S L+ ++L SL N N T+ +T++ L+ N
Sbjct: 443 NQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKN---TYLLTSIDLRFNK 499
Query: 274 FAGPVQPPDQVTIPT---VDLSHNMLS 297
T+P +DLS+N S
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFS 526
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 147 GLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSG 206
L+ L LS N+LT + +P L + + +N LS P A+ LD HN ++
Sbjct: 172 SLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINV 225
Query: 207 SLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITN 266
P ++ ++ L L N L+ L L +DLS N+ +I P
Sbjct: 226 VRGPVNVELTI--LKLQHNNLTDTA--WLLNYPGLVEVDLSYNELE-----KIMYHPFVK 276
Query: 267 LQ-LQR-----------NAFAGPVQPPDQVTIPTVDLSHNML--SGQISPSFSTVQNLYL 312
+Q L+R N + P+ P T+ +DLSHN L + P F ++NLYL
Sbjct: 277 MQRLERLYISNNRLVALNLYGQPI--P---TLKVLDLSHNHLLHVERNQPQFDRLENLYL 331
Query: 313 NNN 315
++N
Sbjct: 332 DHN 334
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 117 SLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176
+ L++L +S+N V A L L TL+L N+LT Q+ L +L +
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113
Query: 177 LCHNKLSGSVPPFLSH---ALTRLD---LKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGP 230
L +N + S+P + + +L RLD LK + A + L +++YL+L L
Sbjct: 114 LRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL-VNLRYLNLGMCNLKDI 171
Query: 231 VDRLLSRLDQLNYLDLSLNQFNGNIPG---------RIFTFPITNLQLQRNAFAGPVQPP 281
+ L+ L +L L+LS N+ + PG +++ ++RNAF
Sbjct: 172 PN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAF------D 223
Query: 282 DQVTIPTVDLSHNMLSGQISPSFS---TVQNLYLNNN 315
D ++ ++LSHN L F+ ++ ++LN+N
Sbjct: 224 DLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 117 SLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176
+L +L NL + ++ N + +L L+ L L NQL L L+ +
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 177 LCHNKLSGSVPPFLSHA---LTRLDLKHNDLSGSLAPDSLPPSV-------QYLSLSWNR 226
L HN+L S+P + LTRLDL +N L SLP V + LSL+ N+
Sbjct: 140 LYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQ------SLPEGVFDKLTQLKQLSLNDNQ 192
Query: 227 LSGPVDRLLSRLDQLNYL 244
L D + RL L ++
Sbjct: 193 LKSVPDGVFDRLTSLTHI 210
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 20/155 (12%)
Query: 116 QSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175
Q + L N+R+ A+ N + +AL +L L L L+ NQL L L +
Sbjct: 57 QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 176 ILCHNKLSGSVPPFLSHALTRLD---LKHNDLSGSLAPDSLPPSV-------QYLSLSWN 225
+L N+L S+P + LT L L HN L SLP V L L N
Sbjct: 115 VLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQ------SLPKGVFDKLTNLTRLDLDNN 167
Query: 226 RLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIF 260
+L + + +L QL L L+ NQ +P +F
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVF 201
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 96 KLTSLAELSIVPGRVIGKLPQSL-SQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLS 154
KLT+L EL +V + + LP + +L NL + + N + +L L LDL
Sbjct: 107 KLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
Query: 155 YNQLTGAIPQSI-GTLPELSNVILCHNKLSGSVPPFLSHALTRL 197
NQL ++P+ + L +L + L N+L SVP + LT L
Sbjct: 166 NNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSL 207
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 15/77 (19%)
Query: 121 LKNLRFFAISRN----------FVSG----EIPAALGQLRGLRTLDLSYNQLTGAIPQSI 166
L NL+ F IS N +++G E+PA + L LR LDLS+N+LT ++P +
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289
Query: 167 GTLPELSNVILCHNKLS 183
G+ +L N ++
Sbjct: 290 GSCFQLKYFYFFDNMVT 306
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 108 GRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIG 167
G + +LP + L NLR +S N ++ +PA LG L+ ++ + +P G
Sbjct: 256 GNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFG 313
Query: 168 TL 169
L
Sbjct: 314 NL 315
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 194 LTRLDLKHNDLSGSLAPDSLPPS--VQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQF 251
L +L+LK N L+G + P++ + +Q L L N++ +++ L QL L+L NQ
Sbjct: 56 LVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 252 NGNIPGRIFTF-PITNLQLQRNAF 274
+ +PG +T+L L N F
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPF 138
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 88 GRL--DPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQL 145
GR+ D G+L L +L + ++ G P + +++ + N + L
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 146 RGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHN 180
L+TL+L NQ++ +P S L L+++ L N
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 118 LSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVIL 177
L QL + +S N + +P AL LR L L S N L + LP L ++L
Sbjct: 459 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLL 515
Query: 178 CHNKL--SGSVPPFLS 191
C+N+L S ++ P +S
Sbjct: 516 CNNRLQQSAAIQPLVS 531
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 118 LSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVIL 177
L QL + +S N + +P AL LR L L S N L + LP L ++L
Sbjct: 459 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLL 515
Query: 178 CHNKL--SGSVPPFLS 191
C+N+L S ++ P +S
Sbjct: 516 CNNRLQQSAAIQPLVS 531
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 308 QNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGI 347
Q L+LNNN+ T PG F DHL++ +Q LY N LT I
Sbjct: 36 QRLWLNNNQITKLEPGVF-DHLVN--LQQLYFNSNKLTAI 72
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 20/178 (11%)
Query: 76 LGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVS 135
L D + G L+ I ++ L ELS K+ + +Q+K+L+ IS+N VS
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELS--------KIAEMTTQMKSLQQLDISQNSVS 387
Query: 136 -GEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--H 192
E + L +L++S N LT I LP V+ H+ S+P +
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIKSIPKQVVKLE 444
Query: 193 ALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250
AL L++ N L PD + + L W + P D R+D YL LN+
Sbjct: 445 ALQELNVASNQLKS--VPDGIFDRLTSLQKIWLH-TNPWDCSCPRID---YLSRWLNK 496
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 77 GDP-RAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFV- 134
G+P ++ SPG + LTSL L V ++ + QL L+ ++ NF+
Sbjct: 84 GNPIQSFSPG-------SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 135 SGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPE 171
S ++PA L L +DLSYN + + L E
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 173
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 77 GDP-RAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFV- 134
G+P ++ SPG + LTSL L V ++ + QL L+ ++ NF+
Sbjct: 89 GNPIQSFSPG-------SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 135 SGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPE 171
S ++PA L L +DLSYN + + L E
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 117 SLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176
S L++L +SRN + A L L TL+L N+LT + L +L +
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 177 LCHNKLSGSVPPFLSH---ALTRLDLKHNDLSGSLAPDSLP--PSVQYLSLSWNRLSGPV 231
L +N + S+P + + +L RLDL ++ + +++YL+L+ L
Sbjct: 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201
Query: 232 DRLLSRLDQLNYLDLSLNQFNGNIPG---------RIFTFPITNLQLQRNAFAGPVQPPD 282
+ L+ L +L+ LDLS N + PG +++ ++RNAF +
Sbjct: 202 N--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF------DN 253
Query: 283 QVTIPTVDLSHNMLS 297
++ ++L+HN L+
Sbjct: 254 LQSLVEINLAHNNLT 268
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 114 LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173
LP+++++++ + +N + P A + LR +DLS NQ++ P + L L+
Sbjct: 30 LPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 174 NVILCHNKLS 183
+++L NK++
Sbjct: 84 SLVLYGNKIT 93
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 114 LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173
LP+++++++ + +N + P A + LR +DLS NQ++ P + L L+
Sbjct: 30 LPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 174 NVILCHNKLS 183
+++L NK++
Sbjct: 84 SLVLYGNKIT 93
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 40/236 (16%)
Query: 147 GLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHAL------TRLDLK 200
L LDLSYN L S LP+L L +N ++ SH+L L+LK
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN----NIQHLFSHSLHGLFNVRYLNLK 304
Query: 201 HNDLSGSLAPDSLP----------PSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250
+ S++ SLP +++L++ N + G + + L L YL LS N
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NS 363
Query: 251 FNG--NIPGRIFT----FPITNLQLQRNAFAGPVQPPDQVT----IPTVDLSHN----ML 296
F + F P+ L L +N + D + + +DL N L
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKI--ESDAFSWLGHLEVLDLGLNEIGQEL 421
Query: 297 SGQISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPT 352
+GQ + +YL+ N++ SF L S+Q L L+ L ++ +P+
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFA---LVPSLQRLMLRRVALKNVDSSPS 474
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 27/117 (23%)
Query: 209 APDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLN------------------- 249
PD LP ++ L+L+ N+L +R QL LD+ N
Sbjct: 19 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78
Query: 250 --QFN--GNIPGRIFTF--PITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLSG 298
Q N + + F F +T L L N+ P Q + T+DLSHN LS
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 80/204 (39%), Gaps = 17/204 (8%)
Query: 128 AISRNFVSG----EIPAA-LGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKL 182
A R F+ G +PAA R L L L N L + L L + L N
Sbjct: 32 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 91
Query: 183 SGSVPPFLSHALTRLDLKHNDLSG--SLAPDSLP--PSVQYLSLSWNRLSGPVDRLLSRL 238
SV P H L RL H D G L P ++QYL L N L D L
Sbjct: 92 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 151
Query: 239 DQLNYLDLSLNQFNGNIPGRIFT--FPITNLQLQRN--AFAGPVQPPDQVTIPTVDLSHN 294
L +L L N+ + ++P R F + L L +N A P D + T+ L N
Sbjct: 152 GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 295 MLSGQISPSFS---TVQNLYLNNN 315
LS + + + +Q L LN+N
Sbjct: 211 NLSALPTEALAPLRALQYLRLNDN 234
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 40/236 (16%)
Query: 147 GLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHAL------TRLDLK 200
L LDLSYN L S LP+L L +N ++ SH+L L+LK
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN----NIQHLFSHSLHGLFNVRYLNLK 309
Query: 201 HNDLSGSLAPDSLP----------PSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250
+ S++ SLP +++L++ N + G + + L L YL LS N
Sbjct: 310 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NS 368
Query: 251 FNG--NIPGRIFT----FPITNLQLQRNAFAGPVQPPDQVT----IPTVDLSHN----ML 296
F + F P+ L L +N + D + + +DL N L
Sbjct: 369 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKI--ESDAFSWLGHLEVLDLGLNEIGQEL 426
Query: 297 SGQISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPT 352
+GQ + +YL+ N++ SF L S+Q L L+ L ++ +P+
Sbjct: 427 TGQEWRGLENIFEIYLSYNKYLQLTRNSFA---LVPSLQRLMLRRVALKNVDSSPS 479
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 27/117 (23%)
Query: 209 APDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLN------------------- 249
PD LP ++ L+L+ N+L +R QL LD+ N
Sbjct: 24 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 83
Query: 250 --QFN--GNIPGRIFTF--PITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLSG 298
Q N + + F F +T L L N+ P Q + T+DLSHN LS
Sbjct: 84 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 23/217 (10%)
Query: 60 NFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSL----------AELSIVPGR 109
N V C + K+ A+ + P T +LD KL+SL L +
Sbjct: 17 NKNSVDCSSKKLTAI-----PSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 110 VIGKLPQSL-SQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGT 168
+ LP + +LKNL ++ N + QL L L L NQL P+ +
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 169 LPELSNVILCHNKLSGSVPPFLSHALT---RLDLKHNDLSG--SLAPDSLPPSVQYLSLS 223
L +L+ + L +N+L S+P + LT L L +N L A D L ++ L L
Sbjct: 132 LTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL-TELKTLKLD 189
Query: 224 WNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIF 260
N+L + L++L L L N ++ G I+
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIY 226
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 40/236 (16%)
Query: 147 GLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHAL------TRLDLK 200
L LDLSYN L S LP+L L +N ++ SH+L L+LK
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN----NIQHLFSHSLHGLFNVRYLNLK 314
Query: 201 HNDLSGSLAPDSLP----------PSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250
+ S++ SLP +++L++ N + G + + L L YL LS N
Sbjct: 315 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NS 373
Query: 251 FNG--NIPGRIFT----FPITNLQLQRNAFAGPVQPPDQVT----IPTVDLSHN----ML 296
F + F P+ L L +N + D + + +DL N L
Sbjct: 374 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKI--ESDAFSWLGHLEVLDLGLNEIGQEL 431
Query: 297 SGQISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPT 352
+GQ + +YL+ N++ SF L S+Q L L+ L ++ +P+
Sbjct: 432 TGQEWRGLENIFEIYLSYNKYLQLTRNSFA---LVPSLQRLMLRRVALKNVDSSPS 484
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 27/117 (23%)
Query: 209 APDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLN------------------- 249
PD LP ++ L+L+ N+L +R QL LD+ N
Sbjct: 29 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 88
Query: 250 --QFN--GNIPGRIFTF--PITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLSG 298
Q N + + F F +T L L N+ P Q + T+DLSHN LS
Sbjct: 89 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 80/204 (39%), Gaps = 17/204 (8%)
Query: 128 AISRNFVSG----EIPAA-LGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKL 182
A R F+ G +PAA R L L L N L + L L + L N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 183 SGSVPPFLSHALTRLDLKHNDLSG--SLAPDSLP--PSVQYLSLSWNRLSGPVDRLLSRL 238
SV P H L RL H D G L P ++QYL L N L D L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 239 DQLNYLDLSLNQFNGNIPGRIFT--FPITNLQLQRN--AFAGPVQPPDQVTIPTVDLSHN 294
L +L L N+ + ++P R F + L L +N A P D + T+ L N
Sbjct: 153 GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 295 MLSGQISPSFS---TVQNLYLNNN 315
LS + + + +Q L LN+N
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 212 SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSL---------NQFNGNIPGRIFTF 262
LP V Y+ LS N ++ + SRL L +L + N F G I
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 263 PITN-LQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQV 321
LQL+ AF G + + +T+ +L +LSG ++++ L L +N
Sbjct: 87 DYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 322 PGSF 325
P SF
Sbjct: 146 PASF 149
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 134 VSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLP-ELSNVILCHNKLSGSVPPFLSH 192
V + AA QL+GL DLS+N L A P +L+++ L L VP L
Sbjct: 219 VCSALAAARVQLQGL---DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA 274
Query: 193 ALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWN 225
L+ LDL +N L + +PD L P V LSL N
Sbjct: 275 KLSVLDLSYNRLDRNPSPDEL-PQVGNLSLKGN 306
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 183 SGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLN 242
S + P S + T ++ + L+ P +P + Q L L N+++ + L QL
Sbjct: 10 SAACPSQCSCSGTTVNCQERSLAS--VPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLT 67
Query: 243 YLDLSLNQFNGNIPGRIFT--FPITNLQLQRN 272
YL+L++NQ +P +F +T+L L N
Sbjct: 68 YLNLAVNQLTA-LPVGVFDKLTKLTHLALHIN 98
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 26/175 (14%)
Query: 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAA---------LG 143
+ L SL LS+ + P+S L NLR+ ++ R F + A
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQ 326
Query: 144 QLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHND 203
L+ L L++ N + + L L + L S T L N+
Sbjct: 327 WLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSL-------------SKTFTSLQTLTNE 373
Query: 204 LSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGR 258
SLA L L+L+ N +S + S L QL LDL LN+ + G+
Sbjct: 374 TFVSLAHSPLLT----LNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 147 GLRTLDLSYNQLTGAIP---QSIGTL-----------PELS-------------NVILCH 179
LR LDLS N L P Q+IG L P L+ N+ L +
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 180 NKLSGSVPPFLS----HALTRLDLKHNDL----SGSLAPDSLPPSVQYLSLSWNRLSGPV 231
N+L + S LT+LDL +N+L +GS S PS++YLSL +N +
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSF---SYLPSLRYLSLEYNNIQRLS 288
Query: 232 DRLLSRLDQLNYLDL 246
R L L YL L
Sbjct: 289 PRSFYGLSNLRYLSL 303
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 114 LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSI-GTLPEL 172
LP ++L+NL F +S+ + P A L L+ L+++ NQL ++P I L L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSL 520
Query: 173 SNVILCHNKLSGSVP--PFLSHALTR 196
+ L N S P +LS L +
Sbjct: 521 QKIWLHTNPWDCSCPRIDYLSRWLNK 546
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 114 LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173
+P+ LS K+L +S N +S + + L TL LSYN+L P++ L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 174 NVILCHNKLS 183
+ L N +S
Sbjct: 106 LLSLHGNDIS 115
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSG--SVPPFL 190
F +P +LR L LDLS QL P + +L L + + HN + P
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 191 SHALTRLDLKHNDLSGSLAPD--SLPPSVQYLSLSWNRLSGPVDR 233
++L LD N + S + P S+ +L+L+ N + +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 114 LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173
LP ++L+NL F +S+ + P A L L+ L++S+N L L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 174 NVILCHNKLSGSVPPFLSH---ALTRLDLKHNDLSGSLAPDSL 213
+ N + S L H +L L+L ND + + S
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSG--SVPPFL 190
F +P +LR L LDLS QL P + +L L + + HN + P
Sbjct: 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540
Query: 191 SHALTRLDLKHNDLSGSLAPD--SLPPSVQYLSLSWNRLSGPVDR 233
++L LD N + S + P S+ +L+L+ N + +
Sbjct: 541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 114 LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173
LP ++L+NL F +S+ + P A L L+ L++S+N L L
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 174 NVILCHNKLSGSVPPFLSH---ALTRLDLKHNDLSGSLAPDSL 213
+ N + S L H +L L+L ND + + S
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 588
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 132 NFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSG--SVPPF 189
+F +P +LR L LDLS QL P + +L L + + HN + P
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220
Query: 190 LSHALTRLDLKHNDLSGSLAPD--SLPPSVQYLSLSWNRLSGPVDR 233
++L LD N + S + P S+ +L+L+ N + +
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 114 LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYN 156
LP ++L+NL F +S+ + P A L L+ L++S+N
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 176 ILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSV-------QYLSLSWNRLS 228
I C++K SVP + + TRL+L+ N L SLP V LSLS N++
Sbjct: 12 IRCNSKGLTSVPTGIPSSATRLELESNKL------QSLPHGVFDKLTQLTKLSLSQNQIQ 65
Query: 229 GPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIF 260
D + +L +L L L N+ ++P +F
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVF 96
>pdb|4B08|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha,
Selenomethionine Protein
Length = 910
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 191 SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLS 247
+HAL + +K N+L +P YL ++ PV+RLL R+D N + LS
Sbjct: 845 AHALNEVXIKSNNL--------IPDPQYYLE---KQIFAPVERLLERIDSFNVVRLS 890
>pdb|2XC1|A Chain A, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|B Chain B, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|C Chain C, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
Length = 666
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 513 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 570
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 571 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 621
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 142 LGQ-LRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL---SHALTRL 197
LGQ L L LD+S+N+LT ++ L EL + L N+L ++PP L + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL 153
Query: 198 DLKHNDLS 205
L +NDL+
Sbjct: 154 SLANNDLT 161
>pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Parallel Beta-Helix:
Rational Mutations In P22 Tailspike Protein
Length = 559
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|1TSP|A Chain A, Crystal Structure Of P22 Tailspike Protein: Interdigitated
Subunits In A Thermostable Trimer
pdb|3TH0|A Chain A, P22 Tailspike Complexed With S.Paratyphi O Antigen
Octasaccharide
Length = 559
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|2VFM|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666)
Length = 559
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna And Dgtp
pdb|4FYD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna And Dgtp
Length = 910
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 191 SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLS 247
+HAL + +K N+L +P YL ++ PV+RLL R+D N + LS
Sbjct: 845 AHALNEVMIKSNNL--------IPDPQYYLE---KQIFAPVERLLERIDSFNVVRLS 890
>pdb|2VFP|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V349l
Length = 559
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|2VFO|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V125l
Length = 559
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha
pdb|4FXD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
pdb|4FXD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
Length = 910
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 191 SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLS 247
+HAL + +K N+L +P YL ++ PV+RLL R+D N + LS
Sbjct: 845 AHALNEVMIKSNNL--------IPDPQYYLE---KQIFAPVERLLERIDSFNVVRLS 890
>pdb|2VFQ|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V450a
Length = 559
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|2VFN|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V125a
Length = 559
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|1QRC|A Chain A, Tailspike Protein, Mutant W391a
Length = 559
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g
Length = 559
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
+L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 406 SLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 463
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 464 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 514
>pdb|1QA3|A Chain A, Tailspike Protein, Mutant A334i
Length = 554
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 401 GLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 458
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 459 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 509
>pdb|1QA2|A Chain A, Tailspike Protein, Mutant A334v
Length = 554
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 401 GLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 458
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 459 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 509
>pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a Mutant
Length = 554
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 401 GLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 458
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 459 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 509
>pdb|1QA1|A Chain A, Tailspike Protein, Mutant V331g
Length = 554
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 401 GLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 458
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 459 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 509
>pdb|1TYU|A Chain A, Structure Of Tailspike-Protein
pdb|1TYV|A Chain A, Structure Of Tailspike-Protein
pdb|1TYW|A Chain A, Structure Of Tailspike-Protein
pdb|1TYX|A Chain A, Title Of Tailspike-Protein
Length = 554
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN 132
L + P + G+TG +DP+ + +LAE + G + S LR +S+
Sbjct: 401 GLTIDAPNSTVSGITGMVDPSRINVANLAEEGL--GNIRANSFGYDSAAIKLRIHKLSKT 458
Query: 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190
SG A + G +Y QLT AI G+ P+ ++ + H G+ PF+
Sbjct: 459 LDSG---ALYSHINGGAGSGSAYTQLT-AIS---GSTPDAVSLKVNHKDCRGAEIPFV 509
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 203 DLSG-SLA--PDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRI 259
D SG SLA P +P + Q L L NR++ + RL QL LDL NQ +P +
Sbjct: 15 DCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGV 73
Query: 260 F 260
F
Sbjct: 74 F 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,759,108
Number of Sequences: 62578
Number of extensions: 491381
Number of successful extensions: 1434
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 262
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)