Query 044898
Match_columns 396
No_of_seqs 492 out of 4043
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-41 4.8E-46 358.9 27.8 335 25-371 26-371 (968)
2 PLN00113 leucine-rich repeat r 100.0 4E-34 8.6E-39 303.6 19.6 299 69-370 118-442 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.5E-34 3.2E-39 268.3 -0.5 310 69-386 125-465 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.5E-32 5.4E-37 253.5 1.7 290 69-367 149-450 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.6E-27 3.5E-32 223.4 -3.2 296 69-377 32-339 (1255)
6 PRK15370 E3 ubiquitin-protein 99.9 2.7E-23 5.9E-28 209.1 19.2 325 20-369 55-428 (754)
7 PRK15387 E3 ubiquitin-protein 99.9 1.5E-23 3.3E-28 209.8 16.5 262 66-370 198-459 (788)
8 KOG0444 Cytoskeletal regulator 99.9 5.2E-26 1.1E-30 213.4 -2.8 286 69-369 7-304 (1255)
9 KOG4237 Extracellular matrix p 99.9 4.6E-26 1E-30 203.1 -6.5 293 70-386 68-372 (498)
10 KOG0472 Leucine-rich repeat pr 99.9 1.9E-25 4.2E-30 199.6 -5.8 269 89-369 151-541 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 1.5E-25 3.2E-30 200.4 -8.3 244 91-369 61-310 (565)
12 PRK15370 E3 ubiquitin-protein 99.9 2.5E-22 5.3E-27 202.2 13.1 277 62-372 171-448 (754)
13 PLN03210 Resistant to P. syrin 99.9 6.4E-21 1.4E-25 203.9 21.8 280 70-366 590-903 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.6E-26 196.2 14.4 242 69-350 222-463 (788)
15 KOG0618 Serine/threonine phosp 99.8 8.3E-23 1.8E-27 199.7 -0.2 284 70-370 46-421 (1081)
16 PLN03210 Resistant to P. syrin 99.8 4E-19 8.8E-24 190.2 20.1 283 69-366 558-879 (1153)
17 KOG0618 Serine/threonine phosp 99.8 7.2E-21 1.6E-25 186.3 -3.9 237 99-366 242-486 (1081)
18 cd00116 LRR_RI Leucine-rich re 99.8 5.6E-20 1.2E-24 171.1 1.7 259 90-367 15-318 (319)
19 KOG4237 Extracellular matrix p 99.8 4.5E-20 9.8E-25 165.1 -1.5 286 69-366 91-498 (498)
20 KOG0617 Ras suppressor protein 99.7 8.4E-20 1.8E-24 145.8 -5.0 165 93-262 28-195 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 5.2E-18 1.1E-22 157.9 3.0 254 70-344 24-319 (319)
22 PLN03150 hypothetical protein; 99.7 3.1E-16 6.7E-21 157.4 14.0 151 22-183 366-528 (623)
23 KOG0617 Ras suppressor protein 99.6 3.1E-17 6.7E-22 131.2 -4.6 155 118-277 29-188 (264)
24 KOG1909 Ran GTPase-activating 99.3 4E-13 8.7E-18 119.3 -0.0 151 94-252 26-198 (382)
25 COG4886 Leucine-rich repeat (L 99.3 5.8E-12 1.3E-16 120.8 6.8 195 102-302 97-295 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.5E-18 128.8 -4.2 178 88-273 88-271 (722)
27 PLN03150 hypothetical protein; 99.3 1.7E-11 3.7E-16 123.3 9.2 106 99-204 419-527 (623)
28 KOG1259 Nischarin, modulator o 99.2 2.9E-12 6.4E-17 111.6 2.1 133 234-372 279-415 (490)
29 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.5E-16 118.7 5.3 182 93-281 111-296 (394)
30 KOG1909 Ran GTPase-activating 99.2 1.8E-12 3.9E-17 115.2 -1.7 167 69-254 30-228 (382)
31 KOG0532 Leucine-rich repeat (L 99.2 9.7E-13 2.1E-17 123.6 -4.6 173 96-276 73-248 (722)
32 PF14580 LRR_9: Leucine-rich r 99.1 6.5E-11 1.4E-15 98.5 4.7 81 236-318 16-101 (175)
33 KOG0531 Protein phosphatase 1, 99.1 1.1E-11 2.4E-16 119.3 -1.2 83 97-183 71-153 (414)
34 KOG3207 Beta-tubulin folding c 99.1 1.8E-11 3.9E-16 111.8 -0.1 204 95-298 118-340 (505)
35 KOG1259 Nischarin, modulator o 99.1 5.1E-11 1.1E-15 104.0 1.6 124 192-318 284-412 (490)
36 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.3E-15 95.7 4.8 84 95-183 16-101 (175)
37 KOG0531 Protein phosphatase 1, 99.0 2.3E-11 5.1E-16 117.0 -2.1 260 99-369 50-318 (414)
38 KOG3207 Beta-tubulin folding c 98.9 2.5E-10 5.5E-15 104.4 2.0 204 119-347 118-341 (505)
39 PF13855 LRR_8: Leucine rich r 98.9 5.2E-10 1.1E-14 76.7 3.1 59 99-157 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 6.2E-10 1.3E-14 76.3 3.4 61 122-182 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 7.8E-09 1.7E-13 106.8 5.7 102 99-201 546-651 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.6 3.9E-08 8.4E-13 101.8 6.5 151 94-247 519-676 (889)
43 PF08263 LRRNT_2: Leucine rich 98.6 7E-08 1.5E-12 60.6 4.3 40 27-67 2-43 (43)
44 KOG1859 Leucine-rich repeat pr 98.6 7E-10 1.5E-14 107.5 -8.0 174 139-318 102-292 (1096)
45 KOG1859 Leucine-rich repeat pr 98.6 8.7E-10 1.9E-14 106.8 -7.4 194 145-368 83-291 (1096)
46 COG5238 RNA1 Ran GTPase-activa 98.6 8.5E-09 1.9E-13 89.1 -1.0 252 94-369 26-316 (388)
47 COG5238 RNA1 Ran GTPase-activa 98.5 1.9E-08 4E-13 87.0 -0.4 184 69-254 30-257 (388)
48 KOG2982 Uncharacterized conser 98.3 1E-07 2.2E-12 83.6 -1.2 209 146-376 45-269 (418)
49 KOG2120 SCF ubiquitin ligase, 98.2 2.6E-08 5.6E-13 87.3 -5.5 84 100-183 187-273 (419)
50 KOG4579 Leucine-rich repeat (L 98.2 9.8E-08 2.1E-12 74.3 -3.4 86 95-183 50-136 (177)
51 KOG2120 SCF ubiquitin ligase, 98.1 6E-08 1.3E-12 85.0 -5.7 227 60-294 127-373 (419)
52 KOG2982 Uncharacterized conser 98.1 8.8E-07 1.9E-11 77.8 1.2 85 97-181 70-157 (418)
53 PF12799 LRR_4: Leucine Rich r 98.1 5.4E-06 1.2E-10 52.1 3.6 36 123-159 2-37 (44)
54 PF12799 LRR_4: Leucine Rich r 98.0 6E-06 1.3E-10 51.9 3.2 37 146-183 1-37 (44)
55 PRK15386 type III secretion pr 98.0 2.9E-05 6.3E-10 72.9 8.2 136 142-294 48-187 (426)
56 KOG4579 Leucine-rich repeat (L 97.9 7.8E-07 1.7E-11 69.3 -2.7 103 99-205 28-136 (177)
57 PRK15386 type III secretion pr 97.9 0.00013 2.8E-09 68.6 10.6 138 118-273 48-188 (426)
58 KOG1644 U2-associated snRNP A' 97.8 5.2E-05 1.1E-09 63.3 5.6 59 123-183 43-101 (233)
59 KOG1644 U2-associated snRNP A' 97.7 4.4E-05 9.6E-10 63.7 4.9 121 241-365 21-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.4 6.8E-05 1.5E-09 76.1 2.1 131 98-230 122-265 (699)
61 KOG2739 Leucine-rich acidic nu 97.4 0.00011 2.5E-09 63.8 2.6 92 89-184 34-130 (260)
62 KOG3665 ZYG-1-like serine/thre 97.2 0.00011 2.4E-09 74.7 0.5 109 215-325 148-270 (699)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00048 1E-08 60.0 2.2 68 114-183 35-104 (260)
64 PF13306 LRR_5: Leucine rich r 96.9 0.0042 9.1E-08 49.1 7.6 82 94-178 8-89 (129)
65 KOG2123 Uncharacterized conser 96.6 7.9E-05 1.7E-09 65.2 -4.6 99 69-176 19-123 (388)
66 PF13306 LRR_5: Leucine rich r 96.2 0.024 5.3E-07 44.6 7.4 100 70-179 13-112 (129)
67 KOG4341 F-box protein containi 95.9 0.00042 9E-09 64.1 -4.7 264 95-363 161-459 (483)
68 PF00560 LRR_1: Leucine Rich R 95.7 0.0055 1.2E-07 32.0 1.1 12 124-135 2-13 (22)
69 PF00560 LRR_1: Leucine Rich R 95.6 0.0064 1.4E-07 31.7 1.1 16 334-349 2-17 (22)
70 PF13504 LRR_7: Leucine rich r 94.8 0.019 4.2E-07 27.8 1.4 15 333-347 2-16 (17)
71 KOG4308 LRR-containing protein 94.8 0.00017 3.8E-09 70.1 -11.4 177 100-276 89-304 (478)
72 KOG2123 Uncharacterized conser 94.7 0.002 4.4E-08 56.7 -4.0 97 263-362 20-123 (388)
73 KOG4308 LRR-containing protein 94.3 0.00025 5.4E-09 69.0 -11.5 36 217-252 146-185 (478)
74 KOG0473 Leucine-rich repeat pr 93.4 0.00098 2.1E-08 57.1 -8.1 88 93-183 37-124 (326)
75 smart00370 LRR Leucine-rich re 92.8 0.077 1.7E-06 28.8 1.6 22 332-353 2-23 (26)
76 smart00369 LRR_TYP Leucine-ric 92.8 0.077 1.7E-06 28.8 1.6 22 332-353 2-23 (26)
77 KOG4341 F-box protein containi 92.1 0.0024 5.2E-08 59.3 -8.0 301 60-366 101-436 (483)
78 KOG0473 Leucine-rich repeat pr 91.3 0.0054 1.2E-07 52.7 -6.2 83 69-159 42-124 (326)
79 smart00369 LRR_TYP Leucine-ric 91.2 0.18 3.9E-06 27.2 1.9 21 238-259 1-21 (26)
80 smart00370 LRR Leucine-rich re 91.2 0.18 3.9E-06 27.2 1.9 21 238-259 1-21 (26)
81 KOG4242 Predicted myosin-I-bin 88.3 2.7 5.9E-05 40.3 8.3 106 263-368 355-480 (553)
82 KOG3864 Uncharacterized conser 87.6 0.087 1.9E-06 44.5 -1.7 79 285-365 102-185 (221)
83 PF13516 LRR_6: Leucine Rich r 84.8 0.21 4.5E-06 26.4 -0.5 14 122-135 2-15 (24)
84 smart00365 LRR_SD22 Leucine-ri 83.2 0.95 2E-05 24.6 1.6 16 332-347 2-17 (26)
85 KOG3864 Uncharacterized conser 82.8 0.21 4.6E-06 42.2 -1.5 34 146-179 151-185 (221)
86 KOG1947 Leucine rich repeat pr 82.2 0.56 1.2E-05 46.0 0.9 79 168-246 241-328 (482)
87 smart00364 LRR_BAC Leucine-ric 81.8 1 2.3E-05 24.4 1.4 17 332-348 2-18 (26)
88 smart00368 LRR_RI Leucine rich 77.9 1.6 3.5E-05 24.0 1.5 16 332-347 2-17 (28)
89 KOG1947 Leucine rich repeat pr 67.0 2.7 6E-05 41.1 1.3 111 95-205 185-308 (482)
90 KOG4242 Predicted myosin-I-bin 63.3 24 0.00053 34.1 6.6 13 69-81 165-177 (553)
91 smart00082 LRRCT Leucine rich 59.6 1.4 3.1E-05 28.1 -1.6 15 371-385 2-16 (51)
92 KOG3763 mRNA export factor TAP 58.6 6.7 0.00015 38.5 2.1 64 282-346 216-284 (585)
93 KOG3763 mRNA export factor TAP 57.5 5.1 0.00011 39.3 1.2 61 215-276 218-284 (585)
94 PF04202 Mfp-3: Foot protein 3 56.8 10 0.00022 25.5 2.1 24 1-24 1-24 (71)
95 PF10731 Anophelin: Thrombin i 33.4 43 0.00093 22.1 2.2 24 1-24 1-24 (65)
96 TIGR00864 PCC polycystin catio 30.3 34 0.00075 40.6 2.3 31 222-252 2-32 (2740)
97 smart00367 LRR_CC Leucine-rich 30.2 35 0.00076 18.1 1.3 11 122-132 2-12 (26)
98 TIGR00864 PCC polycystin catio 26.4 38 0.00082 40.3 1.8 32 128-159 1-32 (2740)
99 PF05725 FNIP: FNIP Repeat; I 23.2 1.3E+02 0.0028 18.3 3.1 8 215-222 34-41 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-41 Score=358.92 Aligned_cols=335 Identities=29% Similarity=0.524 Sum_probs=274.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcceeEeCC-CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEE
Q 044898 25 LDPVDFLALQAIRKSLDDLPGSNFFASWDFTSDPCNFAGVYCDA-DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAEL 103 (396)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~~~~C~w~gv~c~~-~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L 103 (396)
.++.|..||++|++++.+ + ...+.+|+...++|.|.||.|+. ++|+.|+|+ ++++.|.++..+..+++|++|
T Consensus 26 ~~~~~~~~l~~~~~~~~~-~-~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~-----~~~i~~~~~~~~~~l~~L~~L 98 (968)
T PLN00113 26 LHAEELELLLSFKSSIND-P-LKYLSNWNSSADVCLWQGITCNNSSRVVSIDLS-----GKNISGKISSAIFRLPYIQTI 98 (968)
T ss_pred CCHHHHHHHHHHHHhCCC-C-cccCCCCCCCCCCCcCcceecCCCCcEEEEEec-----CCCccccCChHHhCCCCCCEE
Confidence 356899999999999965 3 23568998778999999999985 799999999 467888889999999999999
Q ss_pred EccCCcCccccchhhc-CCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcc
Q 044898 104 SIVPGRVIGKLPQSLS-QLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKL 182 (396)
Q Consensus 104 ~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 182 (396)
++++|.+.+.+|..+. ++++|++|++++|.+++.+|. +.+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 9999999988887765 899999999999999887775 4578899999999988888888888888999999999888
Q ss_pred cccCCchhh--ccCCEEEccCCcCcccCCCC-CCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccc
Q 044898 183 SGSVPPFLS--HALTRLDLKHNDLSGSLAPD-SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRI 259 (396)
Q Consensus 183 ~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 259 (396)
.+.+|..+. ++|++|++++|.+.+..|.. ...++|+.|++++|++++.+|..++.+++|++|++++|.+++.+|..+
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 888888776 78888899888888776652 223788888888888888888888888888888888888888888887
Q ss_pred cCc-ccCEEEccCCcccCcCCCC--CCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcccCCc
Q 044898 260 FTF-PITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDAS 333 (396)
Q Consensus 260 ~~~-~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 333 (396)
... +|++|++++|.+.+..|.. .+++|++|++++|.+.+.+|.. +++|+.|++++|.+++.+|..+..+ ++
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~ 333 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL---PR 333 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC---CC
Confidence 776 7888888888888766544 6678888888888888777754 3467788888888887888777777 78
Q ss_pred ccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCC
Q 044898 334 IQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPP 371 (396)
Q Consensus 334 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 371 (396)
|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 88888888888766566677777788888888777643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-34 Score=303.57 Aligned_cols=299 Identities=32% Similarity=0.489 Sum_probs=181.7
Q ss_pred CCEEEEEcCCCCCC-----------------CCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccC
Q 044898 69 DKVIALNLGDPRAG-----------------SPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISR 131 (396)
Q Consensus 69 ~~v~~L~L~~~~~~-----------------~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 131 (396)
.+++.|+|++|.+. .+.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 46777777754321 2344556666667777777777777777666676677777777777777
Q ss_pred CcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCC
Q 044898 132 NFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLA 209 (396)
Q Consensus 132 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~ 209 (396)
|.+.+.+|..+.++++|++|++++|++++.+|..+.++++|++|++++|.+.+.+|..+. ++|+.|++++|.+.+..|
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 777666666666777777777777776666666666677777777777766666666554 566666666666665554
Q ss_pred CCC-CCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCC--CCCC
Q 044898 210 PDS-LPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP--DQVT 285 (396)
Q Consensus 210 ~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~--~~~~ 285 (396)
... ..++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+... +|+.|++++|.+++..|.. .+++
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 357 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357 (968)
T ss_pred hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence 311 12566666666666666666666666666666666666666666655554 5666666666666554432 4556
Q ss_pred cCEEEccCCCCcccCCcCC---cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhc
Q 044898 286 IPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLC 362 (396)
Q Consensus 286 L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 362 (396)
|+.|++++|++++.+|..+ ++|+.|++++|.+.+.+|..+..+ ++|+.|++++|++++..+..+..++.|+.++
T Consensus 358 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC---RSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC---CCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 6666666666655555432 234455555555555555555444 4555555555555544444444455555555
Q ss_pred ccCccCCC
Q 044898 363 LQYNCMVP 370 (396)
Q Consensus 363 l~~N~l~~ 370 (396)
+++|.+.+
T Consensus 435 Ls~N~l~~ 442 (968)
T PLN00113 435 ISNNNLQG 442 (968)
T ss_pred CcCCcccC
Confidence 55554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=1.5e-34 Score=268.32 Aligned_cols=310 Identities=21% Similarity=0.210 Sum_probs=177.5
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
++++.|+|..|. ++..-..+++-++.|+.|||+.|.|+...-.+|..=.++++|+|++|+|+..-...|..+.+|
T Consensus 125 ghl~~L~L~~N~-----I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 125 GHLEKLDLRHNL-----ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred cceeEEeeeccc-----cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 689999999643 333333456667777777777777776555556666677777777777776666677777777
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCC-CCCcEEEcccC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLP-PSVQYLSLSWN 225 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n 225 (396)
..|.|++|+++...+..|.++++|+.|+|..|+|...-...|. ++|+.|.+..|.++......++. .++++|+|+.|
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence 7777777777755556677777777777777776632233332 55666666666665444433333 55666666666
Q ss_pred CCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCC--CCCCcCEEEccCCCCcccCC-
Q 044898 226 RLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLSGQIS- 301 (396)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ls~N~l~~~~~- 301 (396)
+++..-..++.++++|+.|+++.|.|...-++.+.-. +|++|+|++|+++...+.. .+..|++|++++|.|...-.
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence 6655555555566666666666666554444433332 5666666666655533332 33444555555554432111
Q ss_pred --cCCcccceEEeecccccccCch---hHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCC-------
Q 044898 302 --PSFSTVQNLYLNNNRFTGQVPG---SFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMV------- 369 (396)
Q Consensus 302 --~~~~~L~~L~L~~N~l~~~~~~---~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------- 369 (396)
..+.+|+.|||++|.++..+.+ .|.++ ++|+.|++.+|+|..++..+|.+++.|++|+|.+|.|.
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl---~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL---PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccc---hhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 1233444444444444433322 23333 44444444444444444444444444444444444432
Q ss_pred ------------CCCCCCCCCCCCCCCCC
Q 044898 370 ------------PPVQMQCPLRSGKQKTR 386 (396)
Q Consensus 370 ------------~~~~c~c~~~~~~~~~~ 386 (396)
..+.|||.+.|..+|.+
T Consensus 437 e~m~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 437 EPMELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred ccchhhhhhhcccceEEeccHHHHHHHHH
Confidence 26679999999766544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-32 Score=253.55 Aligned_cols=290 Identities=20% Similarity=0.233 Sum_probs=193.6
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
..++.+|||. +.++..--++|.+-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.+|++|
T Consensus 149 ~alrslDLSr-----N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 149 PALRSLDLSR-----NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred hhhhhhhhhh-----chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 3566677773 33333333456666677777777777777767777777777777777777775555666667777
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCC-CCCcEEEcccC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLP-PSVQYLSLSWN 225 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n 225 (396)
+.|+|..|+|.-..-..|.++++|+.|.|..|.+...-...|. .++++|+|..|+++.....+.+. +.|+.|++++|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 7777777777644355677777777777777777733333333 66777777777776555543343 77777777777
Q ss_pred CCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCC--CCCCCcCEEEccCCCCcccCC-
Q 044898 226 RLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQP--PDQVTIPTVDLSHNMLSGQIS- 301 (396)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~--~~~~~L~~L~ls~N~l~~~~~- 301 (396)
.|..+.++.+...++|+.|+|++|+++..-++.+..+ .|++|.|++|.++..... .++++|++||+++|.++..+.
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 7777777777777777777777777774444445444 677777777777653322 266777777777777765433
Q ss_pred -----cCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCcc
Q 044898 302 -----PSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNC 367 (396)
Q Consensus 302 -----~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 367 (396)
..+++|+.|++.+|++..+-..+|.++ +.|++|||.+|.|..+.+.+|..+ .|++|.+..-.
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl---~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL---EALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccC---cccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 245567777777777775555567766 777777777777777777777776 66666655433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.6e-27 Score=223.39 Aligned_cols=296 Identities=23% Similarity=0.265 Sum_probs=224.4
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCcc-ccccccCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSG-EIPAALGQLRG 147 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~ 147 (396)
.+++.|.|.. .. -..+|..++++.+|++|.+++|++.. +...+..++.|+.+.+..|++.. -+|..+..+..
T Consensus 32 t~~~WLkLnr-----t~-L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 32 TQMTWLKLNR-----TK-LEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hheeEEEech-----hh-hhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 4666666652 22 23678888888888888888888874 44567888888888888888752 36777888899
Q ss_pred CCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh---ccCCEEEccCCcCcccCCCCCCCCCCcEEEccc
Q 044898 148 LRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS---HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSW 224 (396)
Q Consensus 148 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 224 (396)
|+.||||+|+++ ..|..+..-+++-+|+|++|+|. .+|..++ ..|-.|||++|++...+|.......|+.|.|++
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence 999999999988 78888888888899999999988 7887776 567788999999887777655557888899998
Q ss_pred CCCCccchhhhcCCCCCCEEeccCCcCc-ccCCccccCc-ccCEEEccCCcccCcCCC-CCCCCcCEEEccCCCCcccCC
Q 044898 225 NRLSGPVDRLLSRLDQLNYLDLSLNQFN-GNIPGRIFTF-PITNLQLQRNAFAGPVQP-PDQVTIPTVDLSHNMLSGQIS 301 (396)
Q Consensus 225 n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~~-~L~~L~l~~n~l~~~~~~-~~~~~L~~L~ls~N~l~~~~~ 301 (396)
|.+...--..+..+++|++|.+++.+-+ ..+|.++..+ +|..+|++.|.+...... -.+++|+.|++|+|+|+..-.
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM 262 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec
Confidence 8876554445556677778888776644 3577777766 888899999888753222 267889999999999875322
Q ss_pred --cCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCC-CCCCCCCCccchhcccCccCC--CCCCCCC
Q 044898 302 --PSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIE-INPTAEIPSSSSLCLQYNCMV--PPVQMQC 376 (396)
Q Consensus 302 --~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~--~~~~c~c 376 (396)
..+.+|+.|+++.|+++ .+|.+++.+ ++|+.|++.+|+++-.+ ++.++++..|+.+..++|.+. +.-.|.|
T Consensus 263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL---~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC 338 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLT-VLPDAVCKL---TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC 338 (1255)
T ss_pred cHHHHhhhhhhccccchhc-cchHHHhhh---HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh
Confidence 34567888999999998 889999888 88999999999876432 556777888888888888664 3344666
Q ss_pred C
Q 044898 377 P 377 (396)
Q Consensus 377 ~ 377 (396)
.
T Consensus 339 ~ 339 (1255)
T KOG0444|consen 339 V 339 (1255)
T ss_pred H
Confidence 4
No 6
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.91 E-value=2.7e-23 Score=209.11 Aligned_cols=325 Identities=20% Similarity=0.275 Sum_probs=230.8
Q ss_pred hhccCCChHHHHHHHHHHHhCCCCCCC-CCCCCCCCCCCCCCcce----------------eEeCCCCEEEEEcCCCCCC
Q 044898 20 NVFAILDPVDFLALQAIRKSLDDLPGS-NFFASWDFTSDPCNFAG----------------VYCDADKVIALNLGDPRAG 82 (396)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~W~~~~~~C~w~g----------------v~c~~~~v~~L~L~~~~~~ 82 (396)
...+.+.+.|...+.++.+.+..++.. +.-.+|...+++|.-.. |.|..+.|+.+..-+....
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~ 134 (754)
T PRK15370 55 HPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQA 134 (754)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCccccccccccccc
Confidence 456778899999999999998874321 12245988889995433 7788888888877642110
Q ss_pred CC-----CC----------ceecC--------ccc-----cCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcC
Q 044898 83 SP-----GL----------TGRLD--------PAI-----GKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFV 134 (396)
Q Consensus 83 ~~-----~l----------~~~l~--------~~~-----~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 134 (396)
.. .. ....+ .++ .-..+...|++++++++. +|..+. +.|+.|++++|.+
T Consensus 135 ~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~L 211 (754)
T PRK15370 135 SSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILDNNEL 211 (754)
T ss_pred ccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCC
Confidence 00 00 00000 011 112356789999888884 565553 5799999999999
Q ss_pred ccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCC
Q 044898 135 SGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLP 214 (396)
Q Consensus 135 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~ 214 (396)
+ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+..+|+.|++++|.+.. +|. .++
T Consensus 212 t-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~-LP~-~l~ 282 (754)
T PRK15370 212 K-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFHNKISC-LPE-NLP 282 (754)
T ss_pred C-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcCCccCc-ccc-ccC
Confidence 8 5666554 58999999999988 5666553 47999999999988 7788777889999999999884 444 445
Q ss_pred CCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCC
Q 044898 215 PSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHN 294 (396)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N 294 (396)
++|+.|++++|++++. |..+. ++|+.|++++|.++ .+|..+. .+|+.|++++|.+++ +|..-.++|+.|++++|
T Consensus 283 ~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N 356 (754)
T PRK15370 283 EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLT-ALPETLP-PGLKTLEAGENALTS-LPASLPPELQVLDVSKN 356 (754)
T ss_pred CCCcEEECCCCccccC-cccch--hhHHHHHhcCCccc-cCCcccc-ccceeccccCCcccc-CChhhcCcccEEECCCC
Confidence 7899999999998854 43332 47888999999988 4665443 478899999998887 34444468999999999
Q ss_pred CCcccCCcC-CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCC---CCCCCCccchhcccCccCC
Q 044898 295 MLSGQISPS-FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEIN---PTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 295 ~l~~~~~~~-~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~ 369 (396)
+|+. +|.. .++|+.|++++|+++ .+|..+. ..|+.|++++|+|+.++.. .+..++.+..+++.+|++.
T Consensus 357 ~L~~-LP~~lp~~L~~LdLs~N~Lt-~LP~~l~-----~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 357 QITV-LPETLPPTITTLDVSRNALT-NLPENLP-----AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCc-CChhhcCCcCEEECCCCcCC-CCCHhHH-----HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8874 4443 357889999999988 6776654 4688899999998877432 2233577788888888764
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=1.5e-23 Score=209.77 Aligned_cols=262 Identities=24% Similarity=0.318 Sum_probs=190.3
Q ss_pred eCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCC
Q 044898 66 CDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQL 145 (396)
Q Consensus 66 c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 145 (396)
|....-..|++++ ++++ .+|+.+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .
T Consensus 198 Cl~~~~~~LdLs~-----~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p 261 (788)
T PRK15387 198 CLNNGNAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---P 261 (788)
T ss_pred HhcCCCcEEEcCC-----CCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---c
Confidence 5444556788884 5665 5777775 379999999999885 553 3578999999999998 45543 4
Q ss_pred CCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccC
Q 044898 146 RGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWN 225 (396)
Q Consensus 146 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 225 (396)
++|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|.+.+. |. .+..|+.|++++|
T Consensus 262 ~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~-~p~~L~~LdLS~N~L~~L-p~--lp~~L~~L~Ls~N 332 (788)
T PRK15387 262 PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV-LPPGLQELSVSDNQLASL-PA--LPSELCKLWAYNN 332 (788)
T ss_pred cccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc-cccccceeECCCCccccC-CC--CcccccccccccC
Confidence 68889999999887 45543 256888889999888 5565 236789999999988864 32 3457888888888
Q ss_pred CCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCCc
Q 044898 226 RLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFS 305 (396)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~ 305 (396)
++++ +|.. ..+|++|++++|+++ .+|.. ..+|+.|++++|.++.. |. ...+|+.|++++|.|++ +|...+
T Consensus 333 ~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l--p~~L~~L~Ls~N~L~~L-P~-l~~~L~~LdLs~N~Lt~-LP~l~s 402 (788)
T PRK15387 333 QLTS-LPTL---PSGLQELSVSDNQLA-SLPTL--PSELYKLWAYNNRLTSL-PA-LPSGLKELIVSGNRLTS-LPVLPS 402 (788)
T ss_pred cccc-cccc---ccccceEecCCCccC-CCCCC--CcccceehhhccccccC-cc-cccccceEEecCCcccC-CCCccc
Confidence 8875 3431 247888888888888 56643 23677888888888763 32 24578888888888874 555567
Q ss_pred ccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCC
Q 044898 306 TVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 306 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
+|+.|++++|+++ .+|... .+|+.|++++|+|+.+ +..+..++.|+.+++++|++++
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l~------~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPMLP------SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCCEEEccCCcCC-CCCcch------hhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCc
Confidence 7888888888887 466432 4577888888888877 4456678888888888887764
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=5.2e-26 Score=213.36 Aligned_cols=286 Identities=22% Similarity=0.315 Sum_probs=219.3
Q ss_pred CCEEEEEcCCCCCCCCCCc-eecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLT-GRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRG 147 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~-~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 147 (396)
+-|+.+|+++ +.++ +..|..+..++.++-|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.
T Consensus 7 pFVrGvDfsg-----NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 7 PFVRGVDFSG-----NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPR 79 (1255)
T ss_pred ceeecccccC-----CcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchh
Confidence 3578889994 5677 568889999999999999988876 68999999999999999999998 55677889999
Q ss_pred CCEEEeecCcCC-CCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCC-CCCcEEEcc
Q 044898 148 LRTLDLSYNQLT-GAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLP-PSVQYLSLS 223 (396)
Q Consensus 148 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~ 223 (396)
|+.++++.|++. .-+|+.+..+..|..|+|++|++. ..|..+- .++-.|+|++|+|...+...+.. ..|-.|+|+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 999999999886 346888889999999999999999 8888775 78888999999987444332222 677888999
Q ss_pred cCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccC-cCCCC--CCCCcCEEEccCCCCccc
Q 044898 224 WNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAG-PVQPP--DQVTIPTVDLSHNMLSGQ 299 (396)
Q Consensus 224 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~-~~~~~--~~~~L~~L~ls~N~l~~~ 299 (396)
+|++. .+|..+..+.+|++|+|++|++...--..+-.+ +|+.|.+++.+-+- -+|.+ .+.+|..+|+|.|.+. .
T Consensus 159 ~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 159 NNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred cchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence 99988 445567888899999999998753211122222 67777777766543 22332 6778888888888886 4
Q ss_pred CCcC---CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCC
Q 044898 300 ISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 300 ~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
.|+. +.+|+.|+|++|+|+ .+.-..... .+|+.|+|+.|+++.+ ++++.+++.|+.|.+.+|+++
T Consensus 237 vPecly~l~~LrrLNLS~N~it-eL~~~~~~W---~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEW---ENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred chHHHhhhhhhheeccCcCcee-eeeccHHHH---hhhhhhccccchhccc-hHHHhhhHHHHHHHhccCccc
Confidence 5553 346778888888888 555455555 6788888888888877 567778888888888888664
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=4.6e-26 Score=203.14 Aligned_cols=293 Identities=19% Similarity=0.200 Sum_probs=189.3
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccC-CcCccccccccCCCCCC
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISR-NFVSGEIPAALGQLRGL 148 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L 148 (396)
..++|+|. .++++...|.+|+.+++|++|||++|.|+.+-|++|.++++|..|-+.+ |+|+......|++|..|
T Consensus 68 ~tveirLd-----qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLD-----QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEec-----cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45667776 3555555556777777777777777777777777777777776666665 77775555667777777
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCc-hhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPP-FLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWN 225 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 225 (396)
+.|.+.-|++.-...+.|..+++|..|.+.+|.+. .++. .+. .+++.+.+..|.+...-.. +.+..
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL----~wla~------ 211 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNL----PWLAD------ 211 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccccc----chhhh------
Confidence 77777777777666667777777777777777776 4444 232 4556666655553211000 00000
Q ss_pred CCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc--ccCEEEccCCcccCcCCC---CCCCCcCEEEccCCCCcccC
Q 044898 226 RLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF--PITNLQLQRNAFAGPVQP---PDQVTIPTVDLSHNMLSGQI 300 (396)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~--~L~~L~l~~n~l~~~~~~---~~~~~L~~L~ls~N~l~~~~ 300 (396)
+....|..++...-.....+..+++...-+..+... .+..--.+.+...+..|. ..+++|++|++++|+|+++-
T Consensus 212 -~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 212 -DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred -HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 001112223333333333333333331111111111 111111111222222222 27899999999999999887
Q ss_pred CcCCc---ccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCC
Q 044898 301 SPSFS---TVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCP 377 (396)
Q Consensus 301 ~~~~~---~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~ 377 (396)
+.+|. .+++|+|..|+|.......|.++ ..|+.|+|.+|+|+.+.+..|..+.+|.++.+-.| ||.|+|.
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~l---s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N----p~~CnC~ 363 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGL---SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN----PFNCNCR 363 (498)
T ss_pred hhhhcchhhhhhhhcCcchHHHHHHHhhhcc---ccceeeeecCCeeEEEecccccccceeeeeehccC----cccCccc
Confidence 77665 68999999999997777788888 89999999999999999999999999999999999 9999999
Q ss_pred CCCCCCCCC
Q 044898 378 LRSGKQKTR 386 (396)
Q Consensus 378 ~~~~~~~~~ 386 (396)
+.|...|.+
T Consensus 364 l~wl~~Wlr 372 (498)
T KOG4237|consen 364 LAWLGEWLR 372 (498)
T ss_pred hHHHHHHHh
Confidence 999665443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.9e-25 Score=199.56 Aligned_cols=269 Identities=24% Similarity=0.326 Sum_probs=149.8
Q ss_pred ecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccC-
Q 044898 89 RLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIG- 167 (396)
Q Consensus 89 ~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~- 167 (396)
.+|+++..+.++..+++.+|+++...|..+. ++.|++||...|.++ .+|+.++.+.+|..|++.+|++. .+| +|.
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~g 226 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPG 226 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCc
Confidence 4555566666666666666665544333333 555555555555555 45555555555555555555554 333 333
Q ss_pred -----------------------CCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEc
Q 044898 168 -----------------------TLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSL 222 (396)
Q Consensus 168 -----------------------~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L 222 (396)
+++++.+||+.+|++. +.|..++ .+|++||+++|.+++..+..... .|+.|.+
T Consensus 227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhh
Confidence 5555566666666665 5555554 55666666666665554443333 4555555
Q ss_pred ccCCCCccc--------------------------------------h---hhhcCCCCCCEEeccCCcCcccCCccccC
Q 044898 223 SWNRLSGPV--------------------------------------D---RLLSRLDQLNYLDLSLNQFNGNIPGRIFT 261 (396)
Q Consensus 223 ~~n~l~~~~--------------------------------------~---~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 261 (396)
.+|.+..+- + .....+.+.+.|+++.-+++ .+|+..+.
T Consensus 305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfe 383 (565)
T KOG0472|consen 305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFE 383 (565)
T ss_pred cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHH
Confidence 555432000 0 00112233445555555554 55555444
Q ss_pred c----ccCEEEccCCcccCcCCC-------------------------CCCCCcCEEEccCCCCcccCCcCC---cccce
Q 044898 262 F----PITNLQLQRNAFAGPVQP-------------------------PDQVTIPTVDLSHNMLSGQISPSF---STVQN 309 (396)
Q Consensus 262 ~----~L~~L~l~~n~l~~~~~~-------------------------~~~~~L~~L~ls~N~l~~~~~~~~---~~L~~ 309 (396)
. -+...+++.|++...... ..+++|..|++++|.+. .+|..+ -.|+.
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQT 462 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhhe
Confidence 3 256667777766542110 03466777777777665 333322 23556
Q ss_pred EEeeccccc-----------------------ccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCc
Q 044898 310 LYLNNNRFT-----------------------GQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYN 366 (396)
Q Consensus 310 L~L~~N~l~-----------------------~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 366 (396)
|+++.|+|. ..-|..+.++ .+|..|||.+|.+..+ |..++++.+|++|++.||
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm---~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM---RNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGN 538 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh---hhcceeccCCCchhhC-ChhhccccceeEEEecCC
Confidence 666666554 2233335555 7888999999998888 557888899999999999
Q ss_pred cCC
Q 044898 367 CMV 369 (396)
Q Consensus 367 ~l~ 369 (396)
+|.
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 665
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.5e-25 Score=200.36 Aligned_cols=244 Identities=24% Similarity=0.363 Sum_probs=156.3
Q ss_pred CccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCc
Q 044898 91 DPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLP 170 (396)
Q Consensus 91 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 170 (396)
.+.+.++..+.+|.+++|++. ..|.+++.+..++.++.++|++. .+|..++.+.+|+.++.++|.+. .+|++++.+.
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~ 137 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLL 137 (565)
T ss_pred cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHh
Confidence 345566666666666666665 34556666666666666666666 56666666666666666666666 5566666666
Q ss_pred CCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccC
Q 044898 171 ELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSL 248 (396)
Q Consensus 171 ~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 248 (396)
.|+.++..+|+++ ..|+.+. .++..+++.+|.+.... |+.+. ++.|++||...
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~-----------------------~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALP-----------------------ENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCC-----------------------HHHHH-HHHHHhcccch
Confidence 6666666666666 5555443 44555555555554333 33333 44455555544
Q ss_pred CcCcccCCccccCc-ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccC---CcCCcccceEEeecccccccCchh
Q 044898 249 NQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQI---SPSFSTVQNLYLNNNRFTGQVPGS 324 (396)
Q Consensus 249 n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~---~~~~~~L~~L~L~~N~l~~~~~~~ 324 (396)
|-++ .+|+.++.+ +|.-|++.+|.+.......++..|+.|+++.|.|.-.. ...+.++..|||..|+++ ..|.+
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 4443 444444444 44445555555544444445667777777777776322 124567888999999998 88999
Q ss_pred HHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCC
Q 044898 325 FVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 325 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
++-+ .+|++||+++|.|+++ +..++++ .|+.|-+.||++.
T Consensus 271 ~clL---rsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 271 ICLL---RSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HHHh---hhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchH
Confidence 9888 8899999999999988 5567778 8888999999763
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=2.5e-22 Score=202.23 Aligned_cols=277 Identities=22% Similarity=0.293 Sum_probs=211.5
Q ss_pred ceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccc
Q 044898 62 AGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAA 141 (396)
Q Consensus 62 ~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 141 (396)
.-..|...+.+.|++++ .+++ .+|..+. ++|+.|++++|+++. +|..+. ++|++|++++|.++ .+|..
T Consensus 171 r~~~Cl~~~~~~L~L~~-----~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~ 238 (754)
T PRK15370 171 RMRDCLKNNKTELRLKI-----LGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPAT 238 (754)
T ss_pred HHHhhcccCceEEEeCC-----CCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChh
Confidence 33457667889999984 4444 3555553 479999999999985 566554 58999999999998 56765
Q ss_pred cCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEE
Q 044898 142 LGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLS 221 (396)
Q Consensus 142 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 221 (396)
+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+..+|+.|++++|.+++. |. ...++|+.|+
T Consensus 239 l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~L-P~-~lp~sL~~L~ 310 (754)
T PRK15370 239 LP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRTL-PA-HLPSGITHLN 310 (754)
T ss_pred hh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCCCccccC-cc-cchhhHHHHH
Confidence 53 57999999999998 6777664 58999999999999 68887778999999999999864 33 3457899999
Q ss_pred cccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCC
Q 044898 222 LSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQIS 301 (396)
Q Consensus 222 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~ 301 (396)
+++|.++.. |..+ .++|++|++++|.++ .+|..+. .+|+.|++++|+++. +|....++|+.|++++|.++...+
T Consensus 311 Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l~-~sL~~L~Ls~N~L~~-LP~~lp~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 311 VQSNSLTAL-PETL--PPGLKTLEAGENALT-SLPASLP-PELQVLDVSKNQITV-LPETLPPTITTLDVSRNALTNLPE 384 (754)
T ss_pred hcCCccccC-Cccc--cccceeccccCCccc-cCChhhc-CcccEEECCCCCCCc-CChhhcCCcCEEECCCCcCCCCCH
Confidence 999999854 4433 368999999999998 5776654 589999999999985 444445789999999999995433
Q ss_pred cCCcccceEEeecccccccCchhHHhccc-CCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCC
Q 044898 302 PSFSTVQNLYLNNNRFTGQVPGSFVDHLL-DASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPV 372 (396)
Q Consensus 302 ~~~~~L~~L~L~~N~l~~~~~~~~~~~~~-~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 372 (396)
.....|+.|++++|+++ .+|..+..+.. .+++..|++.+|.++.. .+++++.+ ++.+.+.||.
T Consensus 385 ~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~~------tl~~L~~L-l~s~~~~gp~ 448 (754)
T PRK15370 385 NLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSER------TIQNMQRL-MSSVGYQGPR 448 (754)
T ss_pred hHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccHH------HHHHHHHh-hhcccccCCc
Confidence 33347999999999998 77766544321 26789999999998842 34555555 4445555554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=6.4e-21 Score=203.91 Aligned_cols=280 Identities=17% Similarity=0.185 Sum_probs=195.4
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCC
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLR 149 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 149 (396)
.++.|++.++ . ...+|..| ...+|++|++.+|.+. .++..+..+++|++|+|+++.....+|. +..+++|+
T Consensus 590 ~Lr~L~~~~~-----~-l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 590 KLRLLRWDKY-----P-LRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred ccEEEEecCC-----C-CCCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 5677777642 1 23455555 4567777777777765 3556666777777777776654435553 66677777
Q ss_pred EEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh-ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCC
Q 044898 150 TLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS-HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLS 228 (396)
Q Consensus 150 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 228 (396)
+|++++|.....+|..+.++++|+.|++++|.....+|..+. ++|+.|++++|...+..|. ...+|+.|++++|.++
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIE 738 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccc
Confidence 777777665556677777777777777777654446665543 6677777776654444432 2356666666666654
Q ss_pred ccchh------------------------------hhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCc
Q 044898 229 GPVDR------------------------------LLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGP 277 (396)
Q Consensus 229 ~~~~~------------------------------~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~ 277 (396)
. +|. .+...++|+.|++++|...+.+|..+..+ +|+.|++++|..-+.
T Consensus 739 ~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 739 E-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred c-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 2 221 12234578889999998777899988887 899999998764444
Q ss_pred CCCC-CCCCcCEEEccCCCCcccCCcCCcccceEEeecccccccCchhHHhcccCCcccEEEccC-CcCCCCCCCCCCCC
Q 044898 278 VQPP-DQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQH-NFLTGIEINPTAEI 355 (396)
Q Consensus 278 ~~~~-~~~~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l 355 (396)
.|.. .+++|+.|++++|.....+|....+|+.|+|++|.++ .+|.++..+ ++|+.|+|++ |+++.++. ....+
T Consensus 818 LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l---~~L~~L~L~~C~~L~~l~~-~~~~L 892 (1153)
T PLN03210 818 LPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKF---SNLSFLDMNGCNNLQRVSL-NISKL 892 (1153)
T ss_pred eCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcC---CCCCEEECCCCCCcCccCc-ccccc
Confidence 4433 6889999999998777777777789999999999998 789888887 8999999998 66887744 45567
Q ss_pred CccchhcccCc
Q 044898 356 PSSSSLCLQYN 366 (396)
Q Consensus 356 ~~L~~L~l~~N 366 (396)
++|+.+++++|
T Consensus 893 ~~L~~L~l~~C 903 (1153)
T PLN03210 893 KHLETVDFSDC 903 (1153)
T ss_pred cCCCeeecCCC
Confidence 78888887776
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.2e-21 Score=196.22 Aligned_cols=242 Identities=26% Similarity=0.297 Sum_probs=193.5
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++.|++++| .++. +|. ..++|++|++++|+++. +|. ..++|++|++++|.++ .+|.. ..+|
T Consensus 222 ~~L~~L~L~~N-----~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~N~L~-~Lp~l---p~~L 284 (788)
T PRK15387 222 AHITTLVIPDN-----NLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPAL---PSGL 284 (788)
T ss_pred cCCCEEEccCC-----cCCC-CCC---CCCCCcEEEecCCccCc-ccC---cccccceeeccCCchh-hhhhc---hhhc
Confidence 47889999954 4443 553 24789999999999985 454 2478999999999998 45543 3678
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLS 228 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 228 (396)
+.|++++|+++ .+|. ..++|+.|++++|+++ .+|. +...|+.|++++|.+.+ +|. .+.+|+.|++++|+++
T Consensus 285 ~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~-lp~~L~~L~Ls~N~L~~-LP~--lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 285 CKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA-LPSELCKLWAYNNQLTS-LPT--LPSGLQELSVSDNQLA 355 (788)
T ss_pred CEEECcCCccc-cccc---cccccceeECCCCccc-cCCC-CcccccccccccCcccc-ccc--cccccceEecCCCccC
Confidence 89999999998 5564 3478999999999999 4554 34679999999999985 332 3468999999999999
Q ss_pred ccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCCcccc
Q 044898 229 GPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFSTVQ 308 (396)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~L~ 308 (396)
+. |.. .++|+.|++++|+++ .+|... ..|+.|++++|.+++... ..++|+.|++++|.+++ +|..+.+|+
T Consensus 356 ~L-P~l---p~~L~~L~Ls~N~L~-~LP~l~--~~L~~LdLs~N~Lt~LP~--l~s~L~~LdLS~N~Lss-IP~l~~~L~ 425 (788)
T PRK15387 356 SL-PTL---PSELYKLWAYNNRLT-SLPALP--SGLKELIVSGNRLTSLPV--LPSELKELMVSGNRLTS-LPMLPSGLL 425 (788)
T ss_pred CC-CCC---Ccccceehhhccccc-cCcccc--cccceEEecCCcccCCCC--cccCCCEEEccCCcCCC-CCcchhhhh
Confidence 54 432 367889999999998 577543 379999999999997433 24689999999999985 676677899
Q ss_pred eEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCC
Q 044898 309 NLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEIN 350 (396)
Q Consensus 309 ~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~ 350 (396)
.|++++|+|+ .+|..+..+ ++|+.|+|++|.|++..+.
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L---~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHL---SSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhccCccc-ccChHHhhc---cCCCeEECCCCCCCchHHH
Confidence 9999999998 899999988 8999999999999976443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=8.3e-23 Score=199.66 Aligned_cols=284 Identities=24% Similarity=0.334 Sum_probs=191.8
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCC
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLR 149 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 149 (396)
++.+||+++|. .+..|..+..+.+|+.|.++.|.+. ..|.+..++.+|++|.|.+|.+. ..|..+..+++|+
T Consensus 46 ~L~~l~lsnn~------~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 46 KLKSLDLSNNQ------ISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQ 117 (1081)
T ss_pred eeEEeeccccc------cccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccc
Confidence 47788888543 3344555555555555555555544 23444555555555555555554 4455555555555
Q ss_pred EEEeecCcCC------------------------------------------CCCCcccCCCcCCcEEEccCCcccccCC
Q 044898 150 TLDLSYNQLT------------------------------------------GAIPQSIGTLPELSNVILCHNKLSGSVP 187 (396)
Q Consensus 150 ~L~L~~n~l~------------------------------------------~~~p~~~~~l~~L~~L~l~~n~l~~~~p 187 (396)
+|++++|++. +.++..+..+.. .|+|.+|.+. ...
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d 194 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD 194 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh
Confidence 5555555443 222222222322 3556665554 111
Q ss_pred chh--------------------hccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEecc
Q 044898 188 PFL--------------------SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLS 247 (396)
Q Consensus 188 ~~~--------------------~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 247 (396)
... .++++.|+.++|.+....+. ..+.+|++++++.|++++. |+++..+.+|+.++..
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-PVPLNLQYLDISHNNLSNL-PEWIGACANLEALNAN 272 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-cccccceeeecchhhhhcc-hHHHHhcccceEeccc
Confidence 111 14566666666666633332 4457889999999998854 4899999999999999
Q ss_pred CCcCcccCCccccCc-ccCEEEccCCcccCcCCCC-CCCCcCEEEccCCCCcccCCc-----------------------
Q 044898 248 LNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP-DQVTIPTVDLSHNMLSGQISP----------------------- 302 (396)
Q Consensus 248 ~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~-~~~~L~~L~ls~N~l~~~~~~----------------------- 302 (396)
.|.++ .+|..++.. +|+.|++.+|.++-..+.. +..+|++|++..|+|....+.
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 99996 777777665 8888888888888766665 588999999999988632111
Q ss_pred -----CCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCC
Q 044898 303 -----SFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 303 -----~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
.++.|+.|++.+|.++...-..+.+. ++|+.|+|++|+|..++...+.+++.|++|+|+||+++.
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~---~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNF---KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccc---cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh
Confidence 11247889999999998877777777 899999999999999999999999999999999999873
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=4e-19 Score=190.17 Aligned_cols=283 Identities=15% Similarity=0.142 Sum_probs=210.3
Q ss_pred CCEEEEEcCCCCC-CCCCCceecCccccCCC-CCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCC
Q 044898 69 DKVIALNLGDPRA-GSPGLTGRLDPAIGKLT-SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLR 146 (396)
Q Consensus 69 ~~v~~L~L~~~~~-~~~~l~~~l~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 146 (396)
.+++.|.+..+.. ........+|..+..++ +|+.|.+.++.+. .+|..| ...+|++|++.+|.+. .++..+..++
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCC
Confidence 4677777753221 01244556788787765 6999999999876 567666 5789999999999998 6788889999
Q ss_pred CCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEccc
Q 044898 147 GLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSW 224 (396)
Q Consensus 147 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 224 (396)
+|++|+++++...+.+| .+..+++|+.|++++|.....+|..+. ++|+.|++++|...+.+|.....++|+.|++++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg 713 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG 713 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC
Confidence 99999999886555666 488899999999999887778898876 899999999986666666644568999999999
Q ss_pred CCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-------------------------------ccCEEEccCCc
Q 044898 225 NRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-------------------------------PITNLQLQRNA 273 (396)
Q Consensus 225 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-------------------------------~L~~L~l~~n~ 273 (396)
|...+.+|.. .++|++|++++|.+. .+|..+... +|+.|++++|.
T Consensus 714 c~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 714 CSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred CCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 9765555543 468999999999986 666543211 46666666665
Q ss_pred ccCcCCCC--CCCCcCEEEccCCCCcccCCcC--CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCC
Q 044898 274 FAGPVQPP--DQVTIPTVDLSHNMLSGQISPS--FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEI 349 (396)
Q Consensus 274 l~~~~~~~--~~~~L~~L~ls~N~l~~~~~~~--~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 349 (396)
..+..|.. .+++|+.|++++|..-+.+|.. +++|+.|++++|.....+|.. . ++|++|+|++|.++.+ +
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~---~nL~~L~Ls~n~i~~i-P 862 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---S---TNISDLNLSRTGIEEV-P 862 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---c---cccCEeECCCCCCccC-h
Confidence 55544443 6677888888876544455543 467788888877544455532 1 5789999999999887 4
Q ss_pred CCCCCCCccchhcccCc
Q 044898 350 NPTAEIPSSSSLCLQYN 366 (396)
Q Consensus 350 ~~~~~l~~L~~L~l~~N 366 (396)
..+..+++|+.|++++|
T Consensus 863 ~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred HHHhcCCCCCEEECCCC
Confidence 45778899999999884
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=7.2e-21 Score=186.27 Aligned_cols=237 Identities=24% Similarity=0.344 Sum_probs=109.5
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEcc
Q 044898 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILC 178 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (396)
+|+++++++|++++ +|+.+..+.+|+.++..+|++. .+|..+....+|+.|.+.+|.+. .+|+....++.|++|+|.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 34444444444442 2344444444444444444443 34444444444444444444444 334444444455555555
Q ss_pred CCcccccCCchhh----ccCCEEEccCCcCcccCCCCC-CCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcc
Q 044898 179 HNKLSGSVPPFLS----HALTRLDLKHNDLSGSLAPDS-LPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNG 253 (396)
Q Consensus 179 ~n~l~~~~p~~~~----~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 253 (396)
.|++. .+|+.+. .++..|..+.|.+........ ..+.|+.|++.+|.++...-..+.++.+|+.|+|++|++.
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 55544 3443332 123444444444432221101 1134555555555555444444555555555555555554
Q ss_pred cCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhccc
Q 044898 254 NIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLL 330 (396)
Q Consensus 254 ~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~ 330 (396)
.+|..... .+..|+.|++|+|+++. +|.. ++.|+.|...+|++. ..| ++..+
T Consensus 397 ~fpas~~~--------------------kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l-- 451 (1081)
T KOG0618|consen 397 SFPASKLR--------------------KLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL-- 451 (1081)
T ss_pred cCCHHHHh--------------------chHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhc--
Confidence 44443222 34445555555555552 2222 234555555555555 445 44444
Q ss_pred CCcccEEEccCCcCCCCCCCCCCCCCccchhcccCc
Q 044898 331 DASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYN 366 (396)
Q Consensus 331 ~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 366 (396)
+.|+.+|++.|+|+.+....-..-|+|++|+++||
T Consensus 452 -~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 452 -PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred -CcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 55566666665555543322222355555555555
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=5.6e-20 Score=171.15 Aligned_cols=259 Identities=22% Similarity=0.217 Sum_probs=142.8
Q ss_pred cCccccCCCCCCEEEccCCcCccc----cchhhcCCCCCcEEeccCCcCcc------ccccccCCCCCCCEEEeecCcCC
Q 044898 90 LDPAIGKLTSLAELSIVPGRVIGK----LPQSLSQLKNLRFFAISRNFVSG------EIPAALGQLRGLRTLDLSYNQLT 159 (396)
Q Consensus 90 l~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~ 159 (396)
....+..+..|++|+++++.++.. ++..+...++|++++++++.+.+ .++..+..+++|++|++++|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 334455566677777777776443 44455566667777777766651 23344555666777777766665
Q ss_pred CCCCcccCCCcC---CcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCc----cch
Q 044898 160 GAIPQSIGTLPE---LSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSG----PVD 232 (396)
Q Consensus 160 ~~~p~~~~~l~~---L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~----~~~ 232 (396)
+..+..+..+.+ |++|++++|++++.....+...+. ...++|+.|++++|.+++ .++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~----------------~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK----------------DLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH----------------hCCCCceEEEcCCCcCCchHHHHHH
Confidence 444444444433 666666666655311111110000 001345555555555542 122
Q ss_pred hhhcCCCCCCEEeccCCcCcccCCc----cccC-cccCEEEccCCcccCcCC------CCCCCCcCEEEccCCCCcccCC
Q 044898 233 RLLSRLDQLNYLDLSLNQFNGNIPG----RIFT-FPITNLQLQRNAFAGPVQ------PPDQVTIPTVDLSHNMLSGQIS 301 (396)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~l~~~~p~----~~~~-~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~ls~N~l~~~~~ 301 (396)
..+..+++|++|++++|.+++.... .+.. .+|++|++++|.+++... ...+++|++|++++|.+++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 3344455566666666655532111 1111 145566666555543211 1246778888888888775211
Q ss_pred ----c----CCcccceEEeecccccccC----chhHHhcccCCcccEEEccCCcCCCCCCCCCC----CC-Cccchhccc
Q 044898 302 ----P----SFSTVQNLYLNNNRFTGQV----PGSFVDHLLDASIQILYLQHNFLTGIEINPTA----EI-PSSSSLCLQ 364 (396)
Q Consensus 302 ----~----~~~~L~~L~L~~N~l~~~~----~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~l~ 364 (396)
. ....|+.|++++|.++... ...+... ++|+++++++|.++..+...+. .. +.++++++.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~---~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK---ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC---CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 1 2357889999999887332 3333333 6899999999999876433322 23 678888888
Q ss_pred Ccc
Q 044898 365 YNC 367 (396)
Q Consensus 365 ~N~ 367 (396)
+|+
T Consensus 316 ~~~ 318 (319)
T cd00116 316 DDS 318 (319)
T ss_pred CCC
Confidence 883
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=4.5e-20 Score=165.08 Aligned_cols=286 Identities=21% Similarity=0.262 Sum_probs=198.7
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccC-CcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVP-GRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRG 147 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 147 (396)
.++++|||+. ++++..-|.+|..+..|..|-+.+ |+|+....+.|.++..|+.|.+.-|++.-...+.|..+++
T Consensus 91 ~~LRrLdLS~-----N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 91 HRLRRLDLSK-----NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred hhhceecccc-----cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 5899999994 677777888899988888877766 8888777777888888888888888877666777777888
Q ss_pred CCEEEeecCcCCCCCCcccCCCcCCcEEEccCCccc--------------------------------------------
Q 044898 148 LRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS-------------------------------------------- 183 (396)
Q Consensus 148 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-------------------------------------------- 183 (396)
|..|.+..|.+.......|..+..++.+.+..|.+.
T Consensus 166 l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~ 245 (498)
T KOG4237|consen 166 LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL 245 (498)
T ss_pred cchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh
Confidence 877877777776333336666666666666555511
Q ss_pred -----------------ccCCchhh---ccCCEEEccCCcCcccCCCCCCC-CCCcEEEcccCCCCccchhhhcCCCCCC
Q 044898 184 -----------------GSVPPFLS---HALTRLDLKHNDLSGSLAPDSLP-PSVQYLSLSWNRLSGPVDRLLSRLDQLN 242 (396)
Q Consensus 184 -----------------~~~p~~~~---~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 242 (396)
+..|..-+ ++|+.|++++|.+++.-+..+-. ..+++|+|..|++.......|.++..|+
T Consensus 246 c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~ 325 (498)
T KOG4237|consen 246 CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK 325 (498)
T ss_pred hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence 00111111 56778888888887665553322 6778888888888776677788888888
Q ss_pred EEeccCCcCcccCCccccCc-ccCEEEccCCcccC------------------cCCCCCCCCcCEEEccCCCCc------
Q 044898 243 YLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAG------------------PVQPPDQVTIPTVDLSHNMLS------ 297 (396)
Q Consensus 243 ~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~------------------~~~~~~~~~L~~L~ls~N~l~------ 297 (396)
.|+|.+|+|+-..|..|... .|..|++-.|.+.- ..+-.....++.+++++..+.
T Consensus 326 tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~ 405 (498)
T KOG4237|consen 326 TLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGG 405 (498)
T ss_pred eeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCC
Confidence 88888888886666666555 77777777665431 111112223445555544332
Q ss_pred ------------------------------ccCCcCCc-ccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCC
Q 044898 298 ------------------------------GQISPSFS-TVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTG 346 (396)
Q Consensus 298 ------------------------------~~~~~~~~-~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~ 346 (396)
..+|..++ ...+|++.+|.++ .+|.+ .+ .+| .+|+++|++..
T Consensus 406 ~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~---~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 406 PEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LL---RSL-LLDLSNNRISS 478 (498)
T ss_pred ccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HH---hhh-hcccccCceeh
Confidence 12222222 3567899999999 88877 23 678 89999999999
Q ss_pred CCCCCCCCCCccchhcccCc
Q 044898 347 IEINPTAEIPSSSSLCLQYN 366 (396)
Q Consensus 347 ~~~~~~~~l~~L~~L~l~~N 366 (396)
+....|.++..+.++-+++|
T Consensus 479 Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 479 LSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhcccccchhhhheeEEecC
Confidence 98889999999999988886
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=8.4e-20 Score=145.81 Aligned_cols=165 Identities=25% Similarity=0.413 Sum_probs=137.3
Q ss_pred cccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCC
Q 044898 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPEL 172 (396)
Q Consensus 93 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 172 (396)
.+.++.+++.|.+++|+++ .+|..++.+.+|+.|++++|+++ .+|..+..+++|+.|+++-|++. ..|..|+.+|.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3557788899999999998 46778999999999999999999 78999999999999999999998 889999999999
Q ss_pred cEEEccCCccc-ccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCC
Q 044898 173 SNVILCHNKLS-GSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLN 249 (396)
Q Consensus 173 ~~L~l~~n~l~-~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 249 (396)
+.||+++|.+. ..+|..|+ ..|+.|++++|.+.-..+.....++|+.|.+..|.+- ..|..++.++.|+.|.+.+|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999999987 35676665 7788888888888766666556678888888888776 56777888888888888888
Q ss_pred cCcccCCccccCc
Q 044898 250 QFNGNIPGRIFTF 262 (396)
Q Consensus 250 ~l~~~~p~~~~~~ 262 (396)
+++ .+|..++..
T Consensus 184 rl~-vlppel~~l 195 (264)
T KOG0617|consen 184 RLT-VLPPELANL 195 (264)
T ss_pred eee-ecChhhhhh
Confidence 887 677666553
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=5.2e-18 Score=157.91 Aligned_cols=254 Identities=22% Similarity=0.281 Sum_probs=164.2
Q ss_pred CEEEEEcCCCCCCCCCCce----ecCccccCCCCCCEEEccCCcCcc------ccchhhcCCCCCcEEeccCCcCccccc
Q 044898 70 KVIALNLGDPRAGSPGLTG----RLDPAIGKLTSLAELSIVPGRVIG------KLPQSLSQLKNLRFFAISRNFVSGEIP 139 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~----~l~~~~~~l~~L~~L~l~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p 139 (396)
.++.+++++ ..+++ .++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+.+..+
T Consensus 24 ~L~~l~l~~-----~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 24 CLQVLRLEG-----NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred hccEEeecC-----CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 488999985 34432 356667788889999999988762 245667889999999999999986666
Q ss_pred cccCCCCC---CCEEEeecCcCCC----CCCcccCCC-cCCcEEEccCCcccccCCchh----h--ccCCEEEccCCcCc
Q 044898 140 AALGQLRG---LRTLDLSYNQLTG----AIPQSIGTL-PELSNVILCHNKLSGSVPPFL----S--HALTRLDLKHNDLS 205 (396)
Q Consensus 140 ~~l~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~----~--~~L~~L~l~~n~l~ 205 (396)
..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++.....+ . ..|+.|++++|.+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 66655555 9999999999873 233455667 899999999999885433222 2 46888888887776
Q ss_pred ccCCC-----CCCCCCCcEEEcccCCCCcc----chhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccC
Q 044898 206 GSLAP-----DSLPPSVQYLSLSWNRLSGP----VDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAG 276 (396)
Q Consensus 206 ~~~~~-----~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~ 276 (396)
+.... ....++|+.|++++|.+++. ++..+..+++|++|++++|++++.....+..
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~--------------- 243 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS--------------- 243 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH---------------
Confidence 42110 01114677777777776533 2334556667777777777766422221111
Q ss_pred cCCCCCCCCcCEEEccCCCCccc-------CCcCCcccceEEeecccccccCchhHHhccc-C-CcccEEEccCCcC
Q 044898 277 PVQPPDQVTIPTVDLSHNMLSGQ-------ISPSFSTVQNLYLNNNRFTGQVPGSFVDHLL-D-ASIQILYLQHNFL 344 (396)
Q Consensus 277 ~~~~~~~~~L~~L~ls~N~l~~~-------~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~-~-~~L~~L~L~~N~l 344 (396)
..+. ..+.|+.|++++|.++.. ....+++|+.+++++|.++..-...+..... . +.|+++++.+|.+
T Consensus 244 ~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 244 ALLS-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhc-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 0000 235677777877777521 1123357888888888888554444433222 1 4788888888754
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.68 E-value=3.1e-16 Score=157.42 Aligned_cols=151 Identities=29% Similarity=0.445 Sum_probs=121.8
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC-----CcceeEeCC------CCEEEEEcCCCCCCCCCCceec
Q 044898 22 FAILDPVDFLALQAIRKSLDDLPGSNFFASWDFTSDPC-----NFAGVYCDA------DKVIALNLGDPRAGSPGLTGRL 90 (396)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~~~~C-----~w~gv~c~~------~~v~~L~L~~~~~~~~~l~~~l 90 (396)
...+.+.|.+||..+|..+..+. ..+|.. |+| .|.||.|.. ..|+.|+|+ ++++.|.+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~----~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~-----~n~L~g~i 434 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL----RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD-----NQGLRGFI 434 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc----cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECC-----CCCccccC
Confidence 44566789999999999986532 147863 667 699999963 148889988 56788888
Q ss_pred CccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCC-
Q 044898 91 DPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTL- 169 (396)
Q Consensus 91 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l- 169 (396)
|..++++++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++++++|++|++++|++++.+|..+...
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 9889999999999999999988888888889999999999999988888888888889999998888888888877653
Q ss_pred cCCcEEEccCCccc
Q 044898 170 PELSNVILCHNKLS 183 (396)
Q Consensus 170 ~~L~~L~l~~n~l~ 183 (396)
.++..+++.+|...
T Consensus 515 ~~~~~l~~~~N~~l 528 (623)
T PLN03150 515 LHRASFNFTDNAGL 528 (623)
T ss_pred ccCceEEecCCccc
Confidence 35667777777644
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.1e-17 Score=131.20 Aligned_cols=155 Identities=27% Similarity=0.401 Sum_probs=131.6
Q ss_pred hcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCC
Q 044898 118 LSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALT 195 (396)
Q Consensus 118 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~ 195 (396)
+.++.+.+.|.|++|.++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. .+|..|+ +.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445677888999999999 77888999999999999999999 88999999999999999999998 8899987 8999
Q ss_pred EEEccCCcCccc-CCCCCC-CCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCC
Q 044898 196 RLDLKHNDLSGS-LAPDSL-PPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRN 272 (396)
Q Consensus 196 ~L~l~~n~l~~~-~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n 272 (396)
.||+.+|++... .|..++ +..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.. .|++|.+++|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 999999998753 333233 388999999999998 67778999999999999999987 788888775 6666666666
Q ss_pred cccCc
Q 044898 273 AFAGP 277 (396)
Q Consensus 273 ~l~~~ 277 (396)
.++..
T Consensus 184 rl~vl 188 (264)
T KOG0617|consen 184 RLTVL 188 (264)
T ss_pred eeeec
Confidence 66543
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=4e-13 Score=119.26 Aligned_cols=151 Identities=24% Similarity=0.263 Sum_probs=73.6
Q ss_pred ccCCCCCCEEEccCCcCccc----cchhhcCCCCCcEEeccCCc---Cccccc-------cccCCCCCCCEEEeecCcCC
Q 044898 94 IGKLTSLAELSIVPGRVIGK----LPQSLSQLKNLRFFAISRNF---VSGEIP-------AALGQLRGLRTLDLSYNQLT 159 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~---l~~~~p-------~~l~~l~~L~~L~L~~n~l~ 159 (396)
+..+..+++++|++|.+... +...+.+.++|+..++++-- ....+| +.+...++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 33445555555555555432 23334445555555555421 111222 23344556666666666665
Q ss_pred CCCCc----ccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCcc----c
Q 044898 160 GAIPQ----SIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGP----V 231 (396)
Q Consensus 160 ~~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~----~ 231 (396)
...+. -+.....|++|.|.+|.+...-...++..|..|. .+... ...+.|+.+....|++... +
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk~------~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKKA------ASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhcc------CCCcceEEEEeeccccccccHHHH
Confidence 33332 2345667777777777665222222223333332 11111 1224566666666665422 2
Q ss_pred hhhhcCCCCCCEEeccCCcCc
Q 044898 232 DRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 232 ~~~l~~l~~L~~L~l~~n~l~ 252 (396)
...|...+.|+.+.++.|.|.
T Consensus 178 A~~~~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIR 198 (382)
T ss_pred HHHHHhccccceEEEeccccc
Confidence 334555566666666666654
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.8e-12 Score=120.82 Aligned_cols=195 Identities=30% Similarity=0.427 Sum_probs=136.7
Q ss_pred EEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCC-CCCEEEeecCcCCCCCCcccCCCcCCcEEEccCC
Q 044898 102 ELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLR-GLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHN 180 (396)
Q Consensus 102 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 180 (396)
.+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466766666433 233555677888888888887 5566666664 8888888888887 55567778888888888888
Q ss_pred cccccCCchh--hccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCcc
Q 044898 181 KLSGSVPPFL--SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGR 258 (396)
Q Consensus 181 ~l~~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 258 (396)
++. .+|... .+.|+.|++++|.+....+.......|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 888 555553 37788888888888754443234456888888888543 34456777778888888888876 44555
Q ss_pred ccCc-ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCc
Q 044898 259 IFTF-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISP 302 (396)
Q Consensus 259 ~~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 302 (396)
+..+ .+++|++++|.++.........+++.|++++|.+....+.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hccccccceeccccccccccccccccCccCEEeccCccccccchh
Confidence 5555 5888888888887766666677888888888877765543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.6e-13 Score=128.75 Aligned_cols=178 Identities=26% Similarity=0.396 Sum_probs=148.4
Q ss_pred eecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccC
Q 044898 88 GRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIG 167 (396)
Q Consensus 88 ~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 167 (396)
..+|..+..|..|+.+.+..|.+. .+|..+.++..|++|||+.|+++ .+|..+..|+ |+.|-+++|+++ .+|+.++
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig 163 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG 163 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc
Confidence 367788888888999999988886 67889999999999999999998 7788888777 999999999998 8888999
Q ss_pred CCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEe
Q 044898 168 TLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLD 245 (396)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 245 (396)
..+.|..|+.+.|.+. .+|..++ .+|+.|.+..|++....+... .-.|..||++.|+++ .+|-.|.+|++|++|-
T Consensus 164 ~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeee
Confidence 8899999999999998 7787776 789999999999886655422 457889999999998 6788999999999999
Q ss_pred ccCCcCcccCCccccCc----ccCEEEccCCc
Q 044898 246 LSLNQFNGNIPGRIFTF----PITNLQLQRNA 273 (396)
Q Consensus 246 l~~n~l~~~~p~~~~~~----~L~~L~l~~n~ 273 (396)
|.+|++. .-|..+... -.++|+..-++
T Consensus 241 LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 241 LENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9999998 566555443 35666666663
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=1.7e-11 Score=123.34 Aligned_cols=106 Identities=34% Similarity=0.558 Sum_probs=84.6
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEcc
Q 044898 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILC 178 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (396)
.++.|+|++|.+.+.+|..+..+++|++|+|++|.+.|.+|..+..+++|+.|++++|++++.+|+.+.++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcccccCCchhh---ccCCEEEccCCcC
Q 044898 179 HNKLSGSVPPFLS---HALTRLDLKHNDL 204 (396)
Q Consensus 179 ~n~l~~~~p~~~~---~~L~~L~l~~n~l 204 (396)
+|+++|.+|..+. .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 8888888887765 2445666666653
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=2.9e-12 Score=111.65 Aligned_cols=133 Identities=22% Similarity=0.263 Sum_probs=98.1
Q ss_pred hhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCC--cCCcccceE
Q 044898 234 LLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQIS--PSFSTVQNL 310 (396)
Q Consensus 234 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~--~~~~~L~~L 310 (396)
....+..|+.+|+++|.|+ .+.++.... .++.|++++|.+........+++|+.||+|+|.++...- .-+.+++.|
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3444566777777777776 555555443 777777777777766666678889999999998875433 246789999
Q ss_pred EeecccccccCchhHHhcccCCcccEEEccCCcCCCC-CCCCCCCCCccchhcccCccCCCCC
Q 044898 311 YLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGI-EINPTAEIPSSSSLCLQYNCMVPPV 372 (396)
Q Consensus 311 ~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~ 372 (396)
.|++|.|. ... .+..+ -+|..||+++|+|..+ ....++++|-|+.+.|.+|++.+.+
T Consensus 358 ~La~N~iE-~LS-GL~KL---YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIE-TLS-GLRKL---YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHh-hhh-hhHhh---hhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99999887 222 34444 6899999999999886 3567788999999999999876543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=1.2e-11 Score=118.74 Aligned_cols=182 Identities=31% Similarity=0.460 Sum_probs=148.6
Q ss_pred cccCCCCCCEEEccCCcCccccchhhcCCC-CCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcC
Q 044898 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLK-NLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPE 171 (396)
Q Consensus 93 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 171 (396)
.+..++.++.|++.+|.++. ++.....++ +|++|++++|.+. .+|..+..+++|+.|++++|+++ .+|......+.
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~ 187 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN 187 (394)
T ss_pred hhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhh
Confidence 45566889999999999985 555566674 9999999999998 66677899999999999999999 66666668899
Q ss_pred CcEEEccCCcccccCCchh--hccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCC
Q 044898 172 LSNVILCHNKLSGSVPPFL--SHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLN 249 (396)
Q Consensus 172 L~~L~l~~n~l~~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 249 (396)
|+.|++++|++. .+|... ...|+.+.+++|.+...+.......++..+.+.+|++... +..++.++.+++|++++|
T Consensus 188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceeccccc
Confidence 999999999999 778764 3669999999996544444434457888888889888743 678889999999999999
Q ss_pred cCcccCCccccCc-ccCEEEccCCcccCcCCCC
Q 044898 250 QFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP 281 (396)
Q Consensus 250 ~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~ 281 (396)
.++ .++. +... +++.+++++|.+....+..
T Consensus 266 ~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 266 QIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 998 5665 5554 9999999999998766554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=1.8e-12 Score=115.17 Aligned_cols=167 Identities=21% Similarity=0.244 Sum_probs=102.0
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCcc----ccchh-------hcCCCCCcEEeccCCcCccc
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIG----KLPQS-------LSQLKNLRFFAISRNFVSGE 137 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~----~~p~~-------l~~l~~L~~L~L~~n~l~~~ 137 (396)
..++.|+|++|.+| ..-...+.+.+.+.+.|+..++++- ++| .+|+. +...++|++|+||+|.+...
T Consensus 30 ~s~~~l~lsgnt~G-~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFG-TEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred CceEEEeccCCchh-HHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 57899999975432 1112335567778889999998753 333 34443 45778999999999999755
Q ss_pred cccc----cCCCCCCCEEEeecCcCCCCCC-------------cccCCCcCCcEEEccCCcccccCCchhhccCCEEEcc
Q 044898 138 IPAA----LGQLRGLRTLDLSYNQLTGAIP-------------QSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLK 200 (396)
Q Consensus 138 ~p~~----l~~l~~L~~L~L~~n~l~~~~p-------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~ 200 (396)
.+.. +.++..|++|+|.+|.+...-. .....-++|+++...+|++....-..+...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~------- 180 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA------- 180 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH-------
Confidence 4443 4568899999999998762111 123344566666666666552211111100
Q ss_pred CCcCcccCCCCCCCCCCcEEEcccCCCCc----cchhhhcCCCCCCEEeccCCcCccc
Q 044898 201 HNDLSGSLAPDSLPPSVQYLSLSWNRLSG----PVDRLLSRLDQLNYLDLSLNQFNGN 254 (396)
Q Consensus 201 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 254 (396)
....+.|+.+.+..|.|.. .....|.++++|+.|||.+|-++..
T Consensus 181 ----------~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 181 ----------FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ----------HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 0111455555555555531 2345677778888888888877643
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=9.7e-13 Score=123.64 Aligned_cols=173 Identities=28% Similarity=0.408 Sum_probs=108.4
Q ss_pred CCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEE
Q 044898 96 KLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175 (396)
Q Consensus 96 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 175 (396)
.+..-...|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|++||++.|+++ .+|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3445556677777776 45666777777777777777777 66777777777777777777777 6666666664 6777
Q ss_pred EccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcc
Q 044898 176 ILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNG 253 (396)
Q Consensus 176 ~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 253 (396)
.+++|+++ .+|..+. ..|..||.+.|.+....+......+|+.|.+..|++... |+.+..+ .|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCcee-
Confidence 77777776 5665554 556666666666654444433335566666666665533 3333333 3556666666665
Q ss_pred cCCccccCc-ccCEEEccCCcccC
Q 044898 254 NIPGRIFTF-PITNLQLQRNAFAG 276 (396)
Q Consensus 254 ~~p~~~~~~-~L~~L~l~~n~l~~ 276 (396)
.+|-.|..+ .|++|-|.+|.+..
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCC
Confidence 566655555 56666666666554
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=6.5e-11 Score=98.55 Aligned_cols=81 Identities=27% Similarity=0.365 Sum_probs=14.4
Q ss_pred cCCCCCCEEeccCCcCcccCCccccC-c-ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCC---cCCcccceE
Q 044898 236 SRLDQLNYLDLSLNQFNGNIPGRIFT-F-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQIS---PSFSTVQNL 310 (396)
Q Consensus 236 ~~l~~L~~L~l~~n~l~~~~p~~~~~-~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~---~~~~~L~~L 310 (396)
.+..++++|+|++|.|+ .+. .+.. . +|+.|++++|.++.......+++|++|++++|.|+...+ ..+++|+.|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34445677777777775 332 2321 2 455555555555544444444555555555555543211 123444555
Q ss_pred Eeeccccc
Q 044898 311 YLNNNRFT 318 (396)
Q Consensus 311 ~L~~N~l~ 318 (396)
++++|+|.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 55555444
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.09 E-value=1.1e-11 Score=119.34 Aligned_cols=83 Identities=33% Similarity=0.416 Sum_probs=42.3
Q ss_pred CCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEE
Q 044898 97 LTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176 (396)
Q Consensus 97 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 176 (396)
+..++.+.+..|.+.. +-..+..+++|+.|++.+|.|..+ ...+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 4445555555555543 122345555666666666665522 22245555666666666655533 2244444455555
Q ss_pred ccCCccc
Q 044898 177 LCHNKLS 183 (396)
Q Consensus 177 l~~n~l~ 183 (396)
+.+|.++
T Consensus 147 l~~N~i~ 153 (414)
T KOG0531|consen 147 LSGNLIS 153 (414)
T ss_pred eccCcch
Confidence 5555555
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.8e-11 Score=111.84 Aligned_cols=204 Identities=23% Similarity=0.188 Sum_probs=118.8
Q ss_pred cCCCCCCEEEccCCcCccccc-hhhcCCCCCcEEeccCCcCccc--cccccCCCCCCCEEEeecCcCCCCCCc-ccCCCc
Q 044898 95 GKLTSLAELSIVPGRVIGKLP-QSLSQLKNLRFFAISRNFVSGE--IPAALGQLRGLRTLDLSYNQLTGAIPQ-SIGTLP 170 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~ 170 (396)
+++.+|+...|.++.+..... .....+++++.|||+.|-+..- +-.....|++|+.|+++.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456777777777776653211 3556778888888888876532 223456778888888888877522111 122567
Q ss_pred CCcEEEccCCcccccCCchh---hccCCEEEccCCc-CcccCCCCCCCCCCcEEEcccCCCCccc-hhhhcCCCCCCEEe
Q 044898 171 ELSNVILCHNKLSGSVPPFL---SHALTRLDLKHND-LSGSLAPDSLPPSVQYLSLSWNRLSGPV-DRLLSRLDQLNYLD 245 (396)
Q Consensus 171 ~L~~L~l~~n~l~~~~p~~~---~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 245 (396)
+|+.|.++.|.++..-...+ +++++.|++..|. +.-..........|+.|+|++|++-... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 78888888887773222222 1778888888774 2211112233367778888877765322 12456777777777
Q ss_pred ccCCcCcccC-Ccc------ccCcccCEEEccCCcccCcCCCC---CCCCcCEEEccCCCCcc
Q 044898 246 LSLNQFNGNI-PGR------IFTFPITNLQLQRNAFAGPVQPP---DQVTIPTVDLSHNMLSG 298 (396)
Q Consensus 246 l~~n~l~~~~-p~~------~~~~~L~~L~l~~n~l~~~~~~~---~~~~L~~L~ls~N~l~~ 298 (396)
++.+.+...- |+. ..-++|++|++..|++....... .+++|+.|.+..|.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7777776321 211 01126777777777664422221 44556666666666653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=5.1e-11 Score=104.03 Aligned_cols=124 Identities=27% Similarity=0.311 Sum_probs=80.7
Q ss_pred ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEcc
Q 044898 192 HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQ 270 (396)
Q Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~ 270 (396)
+.|+.+|+++|.++.........|.++.|++++|.+... ..+..+++|+.||+++|.++ .+..+-..+ +++.|.++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 457777777777775555545557888888888888744 33777888888888888887 444433333 67777777
Q ss_pred CCcccCcCCCCCCCCcCEEEccCCCCcccC----CcCCcccceEEeeccccc
Q 044898 271 RNAFAGPVQPPDQVTIPTVDLSHNMLSGQI----SPSFSTVQNLYLNNNRFT 318 (396)
Q Consensus 271 ~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~----~~~~~~L~~L~L~~N~l~ 318 (396)
.|.+........+-+|..||+++|+|.... -..++.|+.+.|.+|.+.
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777665444445556677777777765321 123455666666666666
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2e-10 Score=95.66 Aligned_cols=84 Identities=30% Similarity=0.466 Sum_probs=20.5
Q ss_pred cCCCCCCEEEccCCcCccccchhhc-CCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCccc-CCCcCC
Q 044898 95 GKLTSLAELSIVPGRVIGKLPQSLS-QLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSI-GTLPEL 172 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 172 (396)
.+..++++|+|++|.|+.. +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+|+. +.+.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 3444567777777776643 2344 456677777777776632 235666667777777777663 33333 346666
Q ss_pred cEEEccCCccc
Q 044898 173 SNVILCHNKLS 183 (396)
Q Consensus 173 ~~L~l~~n~l~ 183 (396)
++|++++|++.
T Consensus 91 ~~L~L~~N~I~ 101 (175)
T PF14580_consen 91 QELYLSNNKIS 101 (175)
T ss_dssp -EEE-TTS---
T ss_pred CEEECcCCcCC
Confidence 66666666665
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.01 E-value=2.3e-11 Score=117.05 Aligned_cols=260 Identities=23% Similarity=0.229 Sum_probs=180.6
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEcc
Q 044898 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILC 178 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (396)
.++.++...+.+...--. ...+..++.+++..|.+.. +-..+..+++|+.|++.+|+|... ...+..+++|++|+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence 444455544433322111 1466778888899998873 345578899999999999999843 3337889999999999
Q ss_pred CCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccch-hhhcCCCCCCEEeccCCcCcccCCc
Q 044898 179 HNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVD-RLLSRLDQLNYLDLSLNQFNGNIPG 257 (396)
Q Consensus 179 ~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~ 257 (396)
+|.|+...+-.....|+.|++.+|.++..... .....|+.+++++|.++...+ . ...+.+++.+++.+|.+. .+..
T Consensus 127 ~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~-~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~ 203 (414)
T KOG0531|consen 127 FNKITKLEGLSTLTLLKELNLSGNLISDISGL-ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEG 203 (414)
T ss_pred ccccccccchhhccchhhheeccCcchhccCC-ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccc
Confidence 99999666655557799999999999854332 446889999999999986644 2 577889999999999986 3322
Q ss_pred cccCcccCEEEccCCcccCcCCCCCCCC--cCEEEccCCCCccc--CCcCCcccceEEeecccccccCchhHHhcccCCc
Q 044898 258 RIFTFPITNLQLQRNAFAGPVQPPDQVT--IPTVDLSHNMLSGQ--ISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDAS 333 (396)
Q Consensus 258 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~ls~N~l~~~--~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 333 (396)
.-....+..+++..|.++...+...... |+.+++++|.+... ....+..+..|++.+|++...-. +... +.
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~---~~ 278 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG--LERL---PK 278 (414)
T ss_pred hHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc--cccc---ch
Confidence 2222245555888888876555444444 88999999998753 34456678888998888773322 2222 56
Q ss_pred ccEEEccCCcCCCC----CCCCCCCCCccchhcccCccCC
Q 044898 334 IQILYLQHNFLTGI----EINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 334 L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
+..+....|++... ........+.++...+.+|.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 279 LSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred HHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 77778888877632 1122445778888888888655
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.5e-10 Score=104.45 Aligned_cols=204 Identities=22% Similarity=0.216 Sum_probs=100.7
Q ss_pred cCCCCCcEEeccCCcCccccc--cccCCCCCCCEEEeecCcCCCC--CCcccCCCcCCcEEEccCCcccccCCchhhccC
Q 044898 119 SQLKNLRFFAISRNFVSGEIP--AALGQLRGLRTLDLSYNQLTGA--IPQSIGTLPELSNVILCHNKLSGSVPPFLSHAL 194 (396)
Q Consensus 119 ~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L 194 (396)
.++.+|++..|.+..+. ..+ .....+++++.|||++|-+..- +......+|+|+.|+++.|++.........
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~--- 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT--- 193 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---
Confidence 35667777777777665 222 2445667777777777765531 223345667777777777766522111110
Q ss_pred CEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCcc-chhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCC
Q 044898 195 TRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGP-VDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRN 272 (396)
Q Consensus 195 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n 272 (396)
...+.++.|.++.|.++.. +-.....+|+|+.|++..|..-..-......+ .|+.|+|++|
T Consensus 194 -----------------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 194 -----------------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred -----------------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 1124455555555555411 11223344555555555553110100111111 4445555554
Q ss_pred cccCcCCC---CCCCCcCEEEccCCCCccc-CC--------cCCcccceEEeecccccccCch--hHHhcccCCcccEEE
Q 044898 273 AFAGPVQP---PDQVTIPTVDLSHNMLSGQ-IS--------PSFSTVQNLYLNNNRFTGQVPG--SFVDHLLDASIQILY 338 (396)
Q Consensus 273 ~l~~~~~~---~~~~~L~~L~ls~N~l~~~-~~--------~~~~~L~~L~L~~N~l~~~~~~--~~~~~~~~~~L~~L~ 338 (396)
++...... ..++.|+.|+++.+.+... .| ..|++|++|++..|++. ..+. .+..+ ++|++|.
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l---~nlk~l~ 332 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTL---ENLKHLR 332 (505)
T ss_pred cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhcc---chhhhhh
Confidence 44332211 1455555566665555431 11 23556777777777764 2221 22222 6777777
Q ss_pred ccCCcCCCC
Q 044898 339 LQHNFLTGI 347 (396)
Q Consensus 339 L~~N~l~~~ 347 (396)
+..|.++..
T Consensus 333 ~~~n~ln~e 341 (505)
T KOG3207|consen 333 ITLNYLNKE 341 (505)
T ss_pred ccccccccc
Confidence 777777654
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=5.2e-10 Score=76.65 Aligned_cols=59 Identities=34% Similarity=0.463 Sum_probs=29.0
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCc
Q 044898 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQ 157 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 157 (396)
+|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555544444444555555555555555544444444555555555554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=6.2e-10 Score=76.27 Aligned_cols=61 Identities=36% Similarity=0.499 Sum_probs=54.5
Q ss_pred CCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcc
Q 044898 122 KNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKL 182 (396)
Q Consensus 122 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 182 (396)
++|++|++++|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999977777889999999999999999977788999999999999999975
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=7.8e-09 Score=106.85 Aligned_cols=102 Identities=26% Similarity=0.361 Sum_probs=46.6
Q ss_pred CCCEEEccCCc--CccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEE
Q 044898 99 SLAELSIVPGR--VIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176 (396)
Q Consensus 99 ~L~~L~l~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 176 (396)
.|++|-+..|. +....++.|..++.|++|||++|.--+.+|..++.|-+|++|+++++.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 34444444443 22222233444555555555544444445555555555555555555554 4455555555555555
Q ss_pred ccCCcccccCCchhh--ccCCEEEccC
Q 044898 177 LCHNKLSGSVPPFLS--HALTRLDLKH 201 (396)
Q Consensus 177 l~~n~l~~~~p~~~~--~~L~~L~l~~ 201 (396)
+..+.....+|.... ++|++|.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcccccEEEeec
Confidence 554443323322222 4444444443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.64 E-value=3.9e-08 Score=101.75 Aligned_cols=151 Identities=26% Similarity=0.295 Sum_probs=112.0
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCc--CccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcC
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNF--VSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPE 171 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 171 (396)
..+....+...+-+|.+.. ++.. ...++|++|-+..|. +.......|..++.|++||+++|.--+.+|..++.+-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 3444677888888887753 3333 334579999999996 55444556888999999999999877899999999999
Q ss_pred CcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCC-CCCCcEEEcccCCC--CccchhhhcCCCCCCEEec
Q 044898 172 LSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSL-PPSVQYLSLSWNRL--SGPVDRLLSRLDQLNYLDL 246 (396)
Q Consensus 172 L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~l 246 (396)
|++|++++..+. .+|..+. ..|.+|++..+.-...++.... ..+|++|.+..... +...-..+..+.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999999 8999987 8999999998876555544333 48999999876542 2222334455555555555
Q ss_pred c
Q 044898 247 S 247 (396)
Q Consensus 247 ~ 247 (396)
.
T Consensus 676 ~ 676 (889)
T KOG4658|consen 676 T 676 (889)
T ss_pred e
Confidence 3
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.60 E-value=7e-08 Score=60.62 Aligned_cols=40 Identities=48% Similarity=0.865 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCCCCCCCC--CCCCCcceeEeC
Q 044898 27 PVDFLALQAIRKSLDDLPGSNFFASWDFT--SDPCNFAGVYCD 67 (396)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~~~~~~~W~~~--~~~C~w~gv~c~ 67 (396)
+.|.+||++||+++..++ ...+.+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~-~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDP-SGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC--CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhccccc-CcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999998644 4678999986 799999999996
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=7e-10 Score=107.47 Aligned_cols=174 Identities=27% Similarity=0.334 Sum_probs=117.2
Q ss_pred ccccCCCCCCCEEEeecCcCCCCCCcccCCC-cCCcEEEccCCccc----------ccCCchhh-ccCCEEEccCCcCcc
Q 044898 139 PAALGQLRGLRTLDLSYNQLTGAIPQSIGTL-PELSNVILCHNKLS----------GSVPPFLS-HALTRLDLKHNDLSG 206 (396)
Q Consensus 139 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l~~n~l~----------~~~p~~~~-~~L~~L~l~~n~l~~ 206 (396)
|-.+..+.+|+.|.++++.+.. ...+..+ .+|+.|... |.+. |.+...+. ..|...+.++|.+.-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 5556677778888887777652 1122222 234444322 2211 12222222 457777888888875
Q ss_pred cCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCcc-ccCcccCEEEccCCcccCcCCCCCCCC
Q 044898 207 SLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGR-IFTFPITNLQLQRNAFAGPVQPPDQVT 285 (396)
Q Consensus 207 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~ 285 (396)
......+.+.++.|+|++|+++.. +.+..+++|++|||+.|.++ .+|.- .....|..|.+++|.++.......+.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~Lks 255 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKS 255 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhh
Confidence 544444558899999999999865 37888999999999999997 55542 222378999999999887666667888
Q ss_pred cCEEEccCCCCcccC----CcCCcccceEEeeccccc
Q 044898 286 IPTVDLSHNMLSGQI----SPSFSTVQNLYLNNNRFT 318 (396)
Q Consensus 286 L~~L~ls~N~l~~~~----~~~~~~L~~L~L~~N~l~ 318 (396)
|+.||+++|-|.+.- -..+..|+.|.|.+|.+-
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999887532 134557788888888876
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=8.7e-10 Score=106.82 Aligned_cols=194 Identities=26% Similarity=0.258 Sum_probs=113.9
Q ss_pred CCCCCEEEeecCcCCCCC-CcccCCCcCCcEEEccCCcccccCCchh--hccCCEEEccCCc------Cc---ccCCCCC
Q 044898 145 LRGLRTLDLSYNQLTGAI-PQSIGTLPELSNVILCHNKLSGSVPPFL--SHALTRLDLKHND------LS---GSLAPDS 212 (396)
Q Consensus 145 l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~--~~~L~~L~l~~n~------l~---~~~~~~~ 212 (396)
+++++.|.+-.-.-.+.. |-.+..+..|++|.+.++.+.. ..... ...|+.|...+.- ++ |.+....
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence 344444444333222222 6677888899999999998873 11111 1445555433210 00 1111111
Q ss_pred CCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEcc
Q 044898 213 LPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLS 292 (396)
Q Consensus 213 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls 292 (396)
....|...+.++|.+. .+..++.-++.|+.|+|+.|+++. +. .+. .+++|++||++
T Consensus 162 ~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr---------------------~l~~LkhLDls 217 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLR---------------------RLPKLKHLDLS 217 (1096)
T ss_pred hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHH---------------------hcccccccccc
Confidence 1156777777777776 555677777778888888887762 22 222 35666777777
Q ss_pred CCCCcccCCcC--CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCC-CCCCCCCCCccchhcccCccC
Q 044898 293 HNMLSGQISPS--FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGI-EINPTAEIPSSSSLCLQYNCM 368 (396)
Q Consensus 293 ~N~l~~~~~~~--~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l 368 (396)
+|.++...--. -..|+.|.+++|.++ .+- .+.++ .+|+.||+++|-|.+. ....++.+..|+.|.|.||++
T Consensus 218 yN~L~~vp~l~~~gc~L~~L~lrnN~l~-tL~-gie~L---ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 218 YNCLRHVPQLSMVGCKLQLLNLRNNALT-TLR-GIENL---KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhccccccchhhhhheeeeecccHHH-hhh-hHHhh---hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77665322111 124778888888776 222 34555 7888888888887764 344455677888888888844
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.55 E-value=8.5e-09 Score=89.10 Aligned_cols=252 Identities=19% Similarity=0.185 Sum_probs=130.1
Q ss_pred ccCCCCCCEEEccCCcCcccc----chhhcCCCCCcEEeccCCcCc---cccc-------cccCCCCCCCEEEeecCcCC
Q 044898 94 IGKLTSLAELSIVPGRVIGKL----PQSLSQLKNLRFFAISRNFVS---GEIP-------AALGQLRGLRTLDLSYNQLT 159 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~---~~~p-------~~l~~l~~L~~L~L~~n~l~ 159 (396)
+.-+..++.++||+|.|.... ...+.+-.+|+..++++-... ..++ +.+.++++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445677888888888887653 333455667777777653221 1222 23455666666666666665
Q ss_pred CCCCcc----cCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccch---
Q 044898 160 GAIPQS----IGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVD--- 232 (396)
Q Consensus 160 ~~~p~~----~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~--- 232 (396)
...|+. ++.-+.|.+|.+++|.+...-...++..|.+| ..|+- ....|.|+......|++.....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--a~nKK------aa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--AYNKK------AADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--HHHhh------hccCCCceEEEeccchhccCcHHHH
Confidence 444432 34445566666666655422112222222211 11110 0122556666666666542211
Q ss_pred -hhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCC-------cCC
Q 044898 233 -RLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQIS-------PSF 304 (396)
Q Consensus 233 -~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~-------~~~ 304 (396)
..+..-..|+.+.+..|.|.......+.... ...+.+|+.||+.+|.++..-. ..+
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~g----------------l~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLG----------------LFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHH----------------HHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 1222234666666666666522111110000 0134567777777776653211 233
Q ss_pred cccceEEeecccccccCchhHHhc---ccCCcccEEEccCCcCCCCC-----CCCC--CCCCccchhcccCccCC
Q 044898 305 STVQNLYLNNNRFTGQVPGSFVDH---LLDASIQILYLQHNFLTGIE-----INPT--AEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 305 ~~L~~L~L~~N~l~~~~~~~~~~~---~~~~~L~~L~L~~N~l~~~~-----~~~~--~~l~~L~~L~l~~N~l~ 369 (396)
+.|++|.+..|-++.....++... ...|+|..|-..+|.+..-. ...+ ..+|-|..+.+.+|++.
T Consensus 242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 457778887777765544433221 12367888888888765421 1122 13777888888888774
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=1.9e-08 Score=87.04 Aligned_cols=184 Identities=20% Similarity=0.222 Sum_probs=112.0
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcC---ccccc-------hhhcCCCCCcEEeccCCcCcccc
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRV---IGKLP-------QSLSQLKNLRFFAISRNFVSGEI 138 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l---~~~~p-------~~l~~l~~L~~L~L~~n~l~~~~ 138 (396)
..+++++||+|.++. .-...+...+.+-.+|+..+++.-.. ...++ .++.++|+|+..+||+|.+....
T Consensus 30 d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 578999999765531 11233455667777888888775321 11222 34578999999999999998666
Q ss_pred ccc----cCCCCCCCEEEeecCcCCCC----CC---------cccCCCcCCcEEEccCCcccccCCchhh-------ccC
Q 044898 139 PAA----LGQLRGLRTLDLSYNQLTGA----IP---------QSIGTLPELSNVILCHNKLSGSVPPFLS-------HAL 194 (396)
Q Consensus 139 p~~----l~~l~~L~~L~L~~n~l~~~----~p---------~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------~~L 194 (396)
|.. +.+-+.|.+|.+++|.+... +. ....+-|.|+......|++. ..+.... ..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 654 46678899999999977521 11 11234577888888888876 4443322 356
Q ss_pred CEEEccCCcCcccCC------CCCCCCCCcEEEcccCCCCc----cchhhhcCCCCCCEEeccCCcCccc
Q 044898 195 TRLDLKHNDLSGSLA------PDSLPPSVQYLSLSWNRLSG----PVDRLLSRLDQLNYLDLSLNQFNGN 254 (396)
Q Consensus 195 ~~L~l~~n~l~~~~~------~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 254 (396)
+.+.+..|.|....- ..++..+|+.|++..|-++. .+...+..++.|+.|.+.+|-++..
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 777777776542210 01222566666666665542 2233444555566666666655533
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1e-07 Score=83.61 Aligned_cols=209 Identities=20% Similarity=0.215 Sum_probs=117.6
Q ss_pred CCCCEEEeecCcCCCCCC-ccc-CCCcCCcEEEccCCcccccCCchhh-----ccCCEEEccCCcCcccCCCCCCC-CCC
Q 044898 146 RGLRTLDLSYNQLTGAIP-QSI-GTLPELSNVILCHNKLSGSVPPFLS-----HALTRLDLKHNDLSGSLAPDSLP-PSV 217 (396)
Q Consensus 146 ~~L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~l~~n~l~~~~p~~~~-----~~L~~L~l~~n~l~~~~~~~~~~-~~L 217 (396)
..++.|.+.+..|...-- ..| ...+.++.++|.+|.++ ...+.++ +.|+.|+++.|++...+...-.+ .+|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 344455555555542111 112 23467788888888876 2222221 67888888888877655442222 677
Q ss_pred cEEEcccCCCC-ccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCC
Q 044898 218 QYLSLSWNRLS-GPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNML 296 (396)
Q Consensus 218 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l 296 (396)
+.|-|.+..+. ......+..+|.++.|.++.|.+.. +.+..+.++. ..+.+++|+.-.|..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq-------------~n~Dd~c~e~-----~s~~v~tlh~~~c~~ 185 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ-------------LNLDDNCIED-----WSTEVLTLHQLPCLE 185 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh-------------hccccccccc-----cchhhhhhhcCCcHH
Confidence 77777777664 1233455667777777777775431 1222222211 112233333333321
Q ss_pred cc-----cCCcCCcccceEEeecccccccCc-hhHHhcccCCcccEEEccCCcCCCC-CCCCCCCCCccchhcccCccCC
Q 044898 297 SG-----QISPSFSTVQNLYLNNNRFTGQVP-GSFVDHLLDASIQILYLQHNFLTGI-EINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 297 ~~-----~~~~~~~~L~~L~L~~N~l~~~~~-~~~~~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
.. .....|+++..+.+..|.+...-. +.+... +.+..|+|+.|+|.+. ..+.+.+++.++.|.+++|++.
T Consensus 186 ~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~---p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 186 QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF---PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC---CcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 10 111235677777777776663322 223333 6777888888888775 4567777888888888888887
Q ss_pred CCCCCCC
Q 044898 370 PPVQMQC 376 (396)
Q Consensus 370 ~~~~c~c 376 (396)
.+..|.-
T Consensus 263 d~l~~~e 269 (418)
T KOG2982|consen 263 DPLRGGE 269 (418)
T ss_pred ccccCCc
Confidence 7776643
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.6e-08 Score=87.27 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=38.4
Q ss_pred CCEEEccCCcCccc-cchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCc-CCCC-CCcccCCCcCCcEEE
Q 044898 100 LAELSIVPGRVIGK-LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQ-LTGA-IPQSIGTLPELSNVI 176 (396)
Q Consensus 100 L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~ 176 (396)
|++|||++..++.. +...+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55555555444422 22223445555555555555555555555555555555555432 2210 011234445555555
Q ss_pred ccCCccc
Q 044898 177 LCHNKLS 183 (396)
Q Consensus 177 l~~n~l~ 183 (396)
++.+.+.
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 5554443
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=9.8e-08 Score=74.26 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=41.5
Q ss_pred cCCCCCCEEEccCCcCccccchhhc-CCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 95 GKLTSLAELSIVPGRVIGKLPQSLS-QLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
.+..+|+..++++|.+.. .|+.|. ..+.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-
T Consensus 50 ~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 344444445555555543 233332 2334555555555555 44444555555555555555554 4444444455555
Q ss_pred EEEccCCccc
Q 044898 174 NVILCHNKLS 183 (396)
Q Consensus 174 ~L~l~~n~l~ 183 (396)
+|+..+|.+.
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 5555555444
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6e-08 Score=85.04 Aligned_cols=227 Identities=19% Similarity=0.184 Sum_probs=145.4
Q ss_pred CcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCC--CCCCEEEccCCcCccc-cchhhcC-CCCCcEEeccCCcCc
Q 044898 60 NFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKL--TSLAELSIVPGRVIGK-LPQSLSQ-LKNLRFFAISRNFVS 135 (396)
Q Consensus 60 ~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l--~~L~~L~l~~n~l~~~-~p~~l~~-l~~L~~L~L~~n~l~ 135 (396)
+|.+..-+..--+.+|+.+- .+. |.+++.+ .....+.+........ +.+.+.- -.+|++|||++..|+
T Consensus 127 Rfyr~~~de~lW~~lDl~~r-----~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it 198 (419)
T KOG2120|consen 127 RFYRLASDESLWQTLDLTGR-----NIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT 198 (419)
T ss_pred HHhhccccccceeeeccCCC-----ccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee
Confidence 46666666666778888842 222 2222222 2344444443222221 1122221 235999999999887
Q ss_pred cc-cccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh----ccCCEEEccCCcCcccCCC
Q 044898 136 GE-IPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS----HALTRLDLKHNDLSGSLAP 210 (396)
Q Consensus 136 ~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~~L~~L~l~~n~l~~~~~~ 210 (396)
.. +-..+..+.+|+.|.+.++++...+...++...+|+.|+++.+.--........ +.|..|+++-+.+......
T Consensus 199 ~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 199 VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 32 334467889999999999999988888899999999999998642212222221 6799999999887644322
Q ss_pred C---CCCCCCcEEEcccCCC---CccchhhhcCCCCCCEEeccCCc-CcccCCccccCc-ccCEEEccCCcccCcC---C
Q 044898 211 D---SLPPSVQYLSLSWNRL---SGPVDRLLSRLDQLNYLDLSLNQ-FNGNIPGRIFTF-PITNLQLQRNAFAGPV---Q 279 (396)
Q Consensus 211 ~---~~~~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~~-~L~~L~l~~n~l~~~~---~ 279 (396)
. ...++|+.|++++..= ...+......+++|.+|||++|. ++...-..++.. .|++|.++.|..-.+. .
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee
Confidence 1 3348899999988632 12333445688999999999875 443333344444 7999999988753221 1
Q ss_pred CCCCCCcCEEEccCC
Q 044898 280 PPDQVTIPTVDLSHN 294 (396)
Q Consensus 280 ~~~~~~L~~L~ls~N 294 (396)
....++|.+||+.+.
T Consensus 359 l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC 373 (419)
T ss_pred eccCcceEEEEeccc
Confidence 226788999998764
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=8.8e-07 Score=77.84 Aligned_cols=85 Identities=25% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCCCCEEEccCCcCccc--cchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCC-CCCcccCCCcCCc
Q 044898 97 LTSLAELSIVPGRVIGK--LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTG-AIPQSIGTLPELS 173 (396)
Q Consensus 97 l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~ 173 (396)
.++++.+||.+|.++.- +-..+.++|.|+.|+++.|.+...+...-..+.+|+.|-|.+..+.= ..-..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34566666666666532 33334556666666666666553222111244556666665555431 2223344555666
Q ss_pred EEEccCCc
Q 044898 174 NVILCHNK 181 (396)
Q Consensus 174 ~L~l~~n~ 181 (396)
.|.++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 66666553
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.4e-06 Score=52.12 Aligned_cols=36 Identities=36% Similarity=0.601 Sum_probs=15.3
Q ss_pred CCcEEeccCCcCccccccccCCCCCCCEEEeecCcCC
Q 044898 123 NLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLT 159 (396)
Q Consensus 123 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 159 (396)
+|++|++++|+|+ .+|..+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=6e-06 Score=51.91 Aligned_cols=37 Identities=41% Similarity=0.687 Sum_probs=31.7
Q ss_pred CCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCccc
Q 044898 146 RGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS 183 (396)
Q Consensus 146 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 183 (396)
++|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 56777999999999999999998
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=2.9e-05 Score=72.92 Aligned_cols=136 Identities=16% Similarity=0.240 Sum_probs=81.5
Q ss_pred cCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCC-cCcccCCCCCCCCCCcEE
Q 044898 142 LGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHN-DLSGSLAPDSLPPSVQYL 220 (396)
Q Consensus 142 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~L~~L 220 (396)
+..+.+++.|++++|.++ .+|. -.++|+.|.++++.-...+|..+..+|+.|++++| .+. .++++|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~------sLP~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS------GLPESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc------ccccccceE
Confidence 445688999999999887 5562 23469999998754444777767778999999887 443 234578888
Q ss_pred EcccCCCCccchhhhcCC-CCCCEEeccCCc-Ccc-cCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCC
Q 044898 221 SLSWNRLSGPVDRLLSRL-DQLNYLDLSLNQ-FNG-NIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHN 294 (396)
Q Consensus 221 ~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~-l~~-~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N 294 (396)
++..+.... +..+ ++|+.|.+.+++ ... .+| .....+|++|++++|.... .|..-..+|+.|+++.+
T Consensus 118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcc-----cccCcchHhheeccccccccccccc-cccCCcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence 887665431 1122 346667664332 110 111 1112367777777666443 22222346677776655
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=7.8e-07 Score=69.35 Aligned_cols=103 Identities=22% Similarity=0.352 Sum_probs=63.2
Q ss_pred CCCEEEccCCcCccccchh---hcCCCCCcEEeccCCcCcccccccc-CCCCCCCEEEeecCcCCCCCCcccCCCcCCcE
Q 044898 99 SLAELSIVPGRVIGKLPQS---LSQLKNLRFFAISRNFVSGEIPAAL-GQLRGLRTLDLSYNQLTGAIPQSIGTLPELSN 174 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 174 (396)
.+..++|+.|.+. .+++. +.....|+..+|++|.+. .+|..| ...+.++.|++++|.++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455666666554 23333 344455666677777776 344444 34456777777777777 56666777777777
Q ss_pred EEccCCcccccCCchhh--ccCCEEEccCCcCc
Q 044898 175 VILCHNKLSGSVPPFLS--HALTRLDLKHNDLS 205 (396)
Q Consensus 175 L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~ 205 (396)
|+++.|.+. ..|..+. .++..|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 777777776 5565555 45556666666655
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=0.00013 Score=68.58 Aligned_cols=138 Identities=17% Similarity=0.288 Sum_probs=93.0
Q ss_pred hcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCC-cccccCCchhhccCCE
Q 044898 118 LSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHN-KLSGSVPPFLSHALTR 196 (396)
Q Consensus 118 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~L~~ 196 (396)
+..+.++++|++++|.++ .+|. + -.+|++|.++++.--..+|..+ .++|++|++++| .+. .+| .+|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP----~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP----ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc----cccce
Confidence 556789999999999888 5562 2 3469999998854333667655 368999999998 444 455 56888
Q ss_pred EEccCCcCcccCCCCCCCCCCcEEEcccCCCC--ccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCc
Q 044898 197 LDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLS--GPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNA 273 (396)
Q Consensus 197 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~ 273 (396)
|++..+.... ++ .++++|+.|.+.+++.. ...|.. -.++|++|++++|... ..|..+- .+|++|.++.+.
T Consensus 117 L~L~~n~~~~-L~--~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP-~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDS-IK--NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP-ESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCcc-cc--cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc-ccCcEEEecccc
Confidence 9988766532 11 45578999988653311 111111 1268999999998866 4454332 489999998764
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=5.2e-05 Score=63.27 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=33.2
Q ss_pred CCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCccc
Q 044898 123 NLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS 183 (396)
Q Consensus 123 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 183 (396)
+...+||++|.+... ..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.+.+|.+.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 445566666665421 23555666666666666666554444444555666666666554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=4.4e-05 Score=63.67 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=77.8
Q ss_pred CCEEeccCCcCcccCCccccCc--ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCc---CCcccceEEeecc
Q 044898 241 LNYLDLSLNQFNGNIPGRIFTF--PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISP---SFSTVQNLYLNNN 315 (396)
Q Consensus 241 L~~L~l~~n~l~~~~p~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~---~~~~L~~L~L~~N 315 (396)
=+.+++.+.++. .+ +.++.. +...+|+++|.+....-...++.|.+|.+++|.|+...|. .+++|+.|.|.+|
T Consensus 21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccc-ch-hhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 455666666654 11 122222 6777888888887766666778888888888888766553 4567888888888
Q ss_pred cccccCchhHHhcccCCcccEEEccCCcCCCCC---CCCCCCCCccchhcccC
Q 044898 316 RFTGQVPGSFVDHLLDASIQILYLQHNFLTGIE---INPTAEIPSSSSLCLQY 365 (396)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~ 365 (396)
.|.. +. .+..+..+|+|+.|.+-+|.++... ...+..+|+|+.||.++
T Consensus 99 si~~-l~-dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQE-LG-DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhh-hh-hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7762 11 1222222378888888888877643 23445678888877655
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=6.8e-05 Score=76.12 Aligned_cols=131 Identities=18% Similarity=0.290 Sum_probs=64.5
Q ss_pred CCCCEEEccCCcCcc-ccchhhc-CCCCCcEEeccCCcCcc-ccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcE
Q 044898 98 TSLAELSIVPGRVIG-KLPQSLS-QLKNLRFFAISRNFVSG-EIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSN 174 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~-~~p~~l~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 174 (396)
.+|++|++++..... .-|..++ -+|.|+.|.+++-.+.. ..-....++++|..||+|+..++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 355666665543221 1222222 35666666666554431 1223344556666666666666532 45566666666
Q ss_pred EEccCCccccc--CCchhh-ccCCEEEccCCcCcccC-------CCCCCCCCCcEEEcccCCCCcc
Q 044898 175 VILCHNKLSGS--VPPFLS-HALTRLDLKHNDLSGSL-------APDSLPPSVQYLSLSWNRLSGP 230 (396)
Q Consensus 175 L~l~~n~l~~~--~p~~~~-~~L~~L~l~~n~l~~~~-------~~~~~~~~L~~L~L~~n~l~~~ 230 (396)
|.+.+=.+... +-+-+. ++|+.||+|........ ......|+|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 66655544410 001111 56666666655433211 0112236777777777766543
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=0.00011 Score=63.77 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=59.1
Q ss_pred ecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCC--cCccccccccCCCCCCCEEEeecCcCCCCCCcc-
Q 044898 89 RLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRN--FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQS- 165 (396)
Q Consensus 89 ~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~- 165 (396)
.+..-...+..|+.|++.+..++.. ..|..+++|++|.++.| ++.+.++.-...+++|++|++++|++.- ++.
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred Ccccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 3444445566677777777666543 23556778888888888 5555555555666888888888888762 222
Q ss_pred --cCCCcCCcEEEccCCcccc
Q 044898 166 --IGTLPELSNVILCHNKLSG 184 (396)
Q Consensus 166 --~~~l~~L~~L~l~~n~l~~ 184 (396)
+..+.+|..|++.+|..+.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcchhhhhcccCCccc
Confidence 3445566677777776553
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00011 Score=74.65 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCCcEEEcccCCCCc-cchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcC---CCCCCCCcCEE
Q 044898 215 PSVQYLSLSWNRLSG-PVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPV---QPPDQVTIPTV 289 (396)
Q Consensus 215 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~---~~~~~~~L~~L 289 (396)
|+|+.|.+++-.+.. ..-....++++|..||+|+.+++ .+ ..+..+ +|+.|.+.+=.+.... ....+++|+.|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 445555554443321 11223344555555555555554 11 222222 3444433333332211 01145666666
Q ss_pred EccCCCCcccC---------CcCCcccceEEeecccccccCchhH
Q 044898 290 DLSHNMLSGQI---------SPSFSTVQNLYLNNNRFTGQVPGSF 325 (396)
Q Consensus 290 ~ls~N~l~~~~---------~~~~~~L~~L~L~~N~l~~~~~~~~ 325 (396)
|+|........ ...+++|+.||.++..+.+..-+.+
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 66655433211 1234455566665555554444433
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00048 Score=59.96 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=45.3
Q ss_pred cchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecC--cCCCCCCcccCCCcCCcEEEccCCccc
Q 044898 114 LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYN--QLTGAIPQSIGTLPELSNVILCHNKLS 183 (396)
Q Consensus 114 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~ 183 (396)
+......+..|+.|++.+..++.. ..+..|++|++|.++.| ++.+.++.....+|+|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 333344556667777666666522 34667788888888888 666555555556688888888888876
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.93 E-value=0.0042 Score=49.10 Aligned_cols=82 Identities=11% Similarity=0.149 Sum_probs=28.8
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
|.+.++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|.++++|+.+.+.. .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444555555542 333333444445545555555443 3323333444444455554433 22212223344444444
Q ss_pred EEEcc
Q 044898 174 NVILC 178 (396)
Q Consensus 174 ~L~l~ 178 (396)
.+.+.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 44443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=7.9e-05 Score=65.23 Aligned_cols=99 Identities=26% Similarity=0.280 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCcccc-ccccCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEI-PAALGQLRG 147 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~ 147 (396)
..|+.|++.| .++... ....+++.|++|.|+-|+|+..-| |..+++|++|+|..|.|...- -.-+.++++
T Consensus 19 ~~vkKLNcwg-----~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWG-----CGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccC-----CCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 3566666663 233211 124567777777777777775533 667777777777777776321 123456677
Q ss_pred CCEEEeecCcCCCCCCc-----ccCCCcCCcEEE
Q 044898 148 LRTLDLSYNQLTGAIPQ-----SIGTLPELSNVI 176 (396)
Q Consensus 148 L~~L~L~~n~l~~~~p~-----~~~~l~~L~~L~ 176 (396)
|+.|.|..|.-.+.-+. .+.-+|+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777777765544332 244556666664
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.16 E-value=0.024 Score=44.64 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=62.2
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCC
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLR 149 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 149 (396)
+++.+.+.. .+...-..+|.+++.|+.+.+..+ +.......|.+++.|+.+.+.+ .+.......|..+++|+
T Consensus 13 ~l~~i~~~~------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 13 NLESITFPN------TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T--EEEETS------T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCEEEECC------CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 677777762 445444557888889999999875 6666667788998999999976 55445566788899999
Q ss_pred EEEeecCcCCCCCCcccCCCcCCcEEEccC
Q 044898 150 TLDLSYNQLTGAIPQSIGTLPELSNVILCH 179 (396)
Q Consensus 150 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 179 (396)
.+++..+ +.......|.+. .|+.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 9999775 554445677777 899988876
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.86 E-value=0.00042 Score=64.14 Aligned_cols=264 Identities=16% Similarity=0.085 Sum_probs=136.8
Q ss_pred cCCCCCCEEEccCCc-Cccccchhh-cCCCCCcEEeccCC-cCcccccc-ccCCCCCCCEEEeecCc-CCCC-CCcccCC
Q 044898 95 GKLTSLAELSIVPGR-VIGKLPQSL-SQLKNLRFFAISRN-FVSGEIPA-ALGQLRGLRTLDLSYNQ-LTGA-IPQSIGT 168 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~-l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~-~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~ 168 (396)
.+.+++++|.+.++. +++..-..+ ..+++|++|++..+ .++...-. --..+++|++|+++++. +++. +.....+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 456777777777765 222211122 34677888888773 44432222 23467888888888764 3321 1122344
Q ss_pred CcCCcEEEccCCcccccCCchhh------ccCCEEEccCCcCcccCCC---CCCCCCCcEEEcccCCC-Cccchhh-hcC
Q 044898 169 LPELSNVILCHNKLSGSVPPFLS------HALTRLDLKHNDLSGSLAP---DSLPPSVQYLSLSWNRL-SGPVDRL-LSR 237 (396)
Q Consensus 169 l~~L~~L~l~~n~l~~~~p~~~~------~~L~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~~n~l-~~~~~~~-l~~ 237 (396)
...++.+.+.++.=. --..+. ..+..+++..+........ ......|+.+..+++.- +..+-.. -.+
T Consensus 241 ~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 455666655543211 111111 2345555545432211110 01225677777776533 3222222 346
Q ss_pred CCCCCEEeccCCcC-cccCCccccCc--ccCEEEccCCcccCcC----CCCCCCCcCEEEccCCCCc-cc-------CCc
Q 044898 238 LDQLNYLDLSLNQF-NGNIPGRIFTF--PITNLQLQRNAFAGPV----QPPDQVTIPTVDLSHNMLS-GQ-------ISP 302 (396)
Q Consensus 238 l~~L~~L~l~~n~l-~~~~p~~~~~~--~L~~L~l~~n~l~~~~----~~~~~~~L~~L~ls~N~l~-~~-------~~~ 302 (396)
..+|+.|-++.++- +...-..++.. .|+.+++..+...... .....+.|+.+.++++... +. ...
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 67888888887763 22222222222 6777777766554322 1226778888888877643 22 112
Q ss_pred CCcccceEEeeccccc-ccCchhHHhcccCCcccEEEccCCc-CCCCCCCCCC-CCCccchhcc
Q 044898 303 SFSTVQNLYLNNNRFT-GQVPGSFVDHLLDASIQILYLQHNF-LTGIEINPTA-EIPSSSSLCL 363 (396)
Q Consensus 303 ~~~~L~~L~L~~N~l~-~~~~~~~~~~~~~~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~l 363 (396)
....++.+.|+++..+ ...-+.+... ++|+.+++-+.+ ++..+...|. .+|+++...+
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c---~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSIC---RNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhC---cccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 3445778888888543 2233333333 788888888775 3333333332 4676665443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0055 Score=31.96 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=5.5
Q ss_pred CcEEeccCCcCc
Q 044898 124 LRFFAISRNFVS 135 (396)
Q Consensus 124 L~~L~L~~n~l~ 135 (396)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0064 Score=31.72 Aligned_cols=16 Identities=38% Similarity=0.358 Sum_probs=9.1
Q ss_pred ccEEEccCCcCCCCCC
Q 044898 334 IQILYLQHNFLTGIEI 349 (396)
Q Consensus 334 L~~L~L~~N~l~~~~~ 349 (396)
|++|||++|+|+.++.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 5566666666665543
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.81 E-value=0.019 Score=27.77 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=8.3
Q ss_pred cccEEEccCCcCCCC
Q 044898 333 SIQILYLQHNFLTGI 347 (396)
Q Consensus 333 ~L~~L~L~~N~l~~~ 347 (396)
+|+.|+|++|+|+++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 577777777777654
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.78 E-value=0.00017 Score=70.05 Aligned_cols=177 Identities=24% Similarity=0.226 Sum_probs=96.8
Q ss_pred CCEEEccCCcCcccc----chhhcCCCCCcEEeccCCcCccccc----cccCCC-CCCCEEEeecCcCCC----CCCccc
Q 044898 100 LAELSIVPGRVIGKL----PQSLSQLKNLRFFAISRNFVSGEIP----AALGQL-RGLRTLDLSYNQLTG----AIPQSI 166 (396)
Q Consensus 100 L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~----~~p~~~ 166 (396)
+..|.+.+|.+.... -..+...+.|+.|++++|.+.+..- ..+... ..|++|++..+.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556666666665442 2234456666666777666653211 112222 445566666666553 233445
Q ss_pred CCCcCCcEEEccCCccccc--------CCch--hhccCCEEEccCCcCcccCCC-----CCCCCC-CcEEEcccCCCCcc
Q 044898 167 GTLPELSNVILCHNKLSGS--------VPPF--LSHALTRLDLKHNDLSGSLAP-----DSLPPS-VQYLSLSWNRLSGP 230 (396)
Q Consensus 167 ~~l~~L~~L~l~~n~l~~~--------~p~~--~~~~L~~L~l~~n~l~~~~~~-----~~~~~~-L~~L~L~~n~l~~~ 230 (396)
.....++.++++.|.+... ++.. ...++++|.+.++.++...-. ....+. +..+++..|++...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5566677777777766411 1110 013466666666665421100 011123 56688888887633
Q ss_pred ----chhhhcCC-CCCCEEeccCCcCcccCCccccCc-----ccCEEEccCCcccC
Q 044898 231 ----VDRLLSRL-DQLNYLDLSLNQFNGNIPGRIFTF-----PITNLQLQRNAFAG 276 (396)
Q Consensus 231 ----~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~-----~L~~L~l~~n~l~~ 276 (396)
....+..+ ..+++++++.|.++......+... .++++.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 23344555 677888888888886655544432 67788888887765
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.002 Score=56.67 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=58.4
Q ss_pred ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCC-cCCcccceEEeecccccccCch-hHHhcccCCcccEEEcc
Q 044898 263 PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQIS-PSFSTVQNLYLNNNRFTGQVPG-SFVDHLLDASIQILYLQ 340 (396)
Q Consensus 263 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~-~~~~~L~~L~L~~N~l~~~~~~-~~~~~~~~~~L~~L~L~ 340 (396)
+++.|++.++.++.......++.|++|.||-|+|+..-| ....+|++|+|..|.|...--- .+.++ |+|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl---psLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL---PSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC---chhhhHhhc
Confidence 466677777777765444467777888888887775444 2345677777777777632211 22333 777777777
Q ss_pred CCcCCCCCCC-----CCCCCCccchhc
Q 044898 341 HNFLTGIEIN-----PTAEIPSSSSLC 362 (396)
Q Consensus 341 ~N~l~~~~~~-----~~~~l~~L~~L~ 362 (396)
.|.-.+-... .+.-+|+|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 7765543222 223366666654
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.30 E-value=0.00025 Score=68.96 Aligned_cols=36 Identities=36% Similarity=0.475 Sum_probs=19.7
Q ss_pred CcEEEcccCCCCc----cchhhhcCCCCCCEEeccCCcCc
Q 044898 217 VQYLSLSWNRLSG----PVDRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 217 L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~ 252 (396)
+++|++..|.++. .+.+.+.....++.++++.|.+.
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 3344444444432 33445555667777777777663
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.41 E-value=0.00098 Score=57.08 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=50.4
Q ss_pred cccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCC
Q 044898 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPEL 172 (396)
Q Consensus 93 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 172 (396)
.+..+...+.||++.|.+.. +-..|.-++.|..|+++.|++. ..|..++.+..++.+++..|..+ ..|.++...+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 34445555555555555432 2233444555666666666665 55666666666666666666665 556666666666
Q ss_pred cEEEccCCccc
Q 044898 173 SNVILCHNKLS 183 (396)
Q Consensus 173 ~~L~l~~n~l~ 183 (396)
+++++-+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 66666666543
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.78 E-value=0.077 Score=28.76 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=17.3
Q ss_pred CcccEEEccCCcCCCCCCCCCC
Q 044898 332 ASIQILYLQHNFLTGIEINPTA 353 (396)
Q Consensus 332 ~~L~~L~L~~N~l~~~~~~~~~ 353 (396)
++|+.|+|++|+|+.++...|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 6788888888888888766553
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.78 E-value=0.077 Score=28.76 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=17.3
Q ss_pred CcccEEEccCCcCCCCCCCCCC
Q 044898 332 ASIQILYLQHNFLTGIEINPTA 353 (396)
Q Consensus 332 ~~L~~L~L~~N~l~~~~~~~~~ 353 (396)
++|+.|+|++|+|+.++...|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 6788888888888888766553
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.13 E-value=0.0024 Score=59.29 Aligned_cols=301 Identities=17% Similarity=0.089 Sum_probs=164.0
Q ss_pred CcceeEeCCCCEEEEEcCCCCCCCCCCceecCc-cccCC-CCCCEEEccCCcCccc--cchhhcCCCCCcEEeccCCc-C
Q 044898 60 NFAGVYCDADKVIALNLGDPRAGSPGLTGRLDP-AIGKL-TSLAELSIVPGRVIGK--LPQSLSQLKNLRFFAISRNF-V 134 (396)
Q Consensus 60 ~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~-~~~~l-~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n~-l 134 (396)
.|++..=+...-+.+||.... ....|.+-. -+.+. ..|+.|.+.++.=.+. .-....+++++++|++.++. +
T Consensus 101 ~~n~~AlD~~~~q~idL~t~~---rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i 177 (483)
T KOG4341|consen 101 MWNKLALDGSCWQHIDLFTFQ---RDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI 177 (483)
T ss_pred Hhhhhhhccccceeeehhcch---hcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceec
Confidence 477666665556677776311 111111111 11111 4688889888754433 22334678999999988875 2
Q ss_pred cccccccc-CCCCCCCEEEeecC-cCCCCCCc-ccCCCcCCcEEEccCCc-ccccCCchhh---ccCCEEEccCCcCccc
Q 044898 135 SGEIPAAL-GQLRGLRTLDLSYN-QLTGAIPQ-SIGTLPELSNVILCHNK-LSGSVPPFLS---HALTRLDLKHNDLSGS 207 (396)
Q Consensus 135 ~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~-~~~~l~~L~~L~l~~n~-l~~~~p~~~~---~~L~~L~l~~n~l~~~ 207 (396)
+...-..+ ..+++|++|++..+ .++...-. -...+++|++++++.+. +++..-..+. ..++.+.+.++.=.+.
T Consensus 178 Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l 257 (483)
T KOG4341|consen 178 TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL 257 (483)
T ss_pred cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH
Confidence 22211122 45789999999884 34422222 23467899999998875 3332222222 3355554444321110
Q ss_pred ---CCCCCCCCCCcEEEcccCC-CCccc-hhhhcCCCCCCEEeccCCcCccc-CCccccCc--ccCEEEccCCcc-cCcC
Q 044898 208 ---LAPDSLPPSVQYLSLSWNR-LSGPV-DRLLSRLDQLNYLDLSLNQFNGN-IPGRIFTF--PITNLQLQRNAF-AGPV 278 (396)
Q Consensus 208 ---~~~~~~~~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~~--~L~~L~l~~n~l-~~~~ 278 (396)
.-.......+..+++..+. ++..- -..-..+.+|+.|+.+++.-.+. .-..++.. +|+.+.++.++- +...
T Consensus 258 e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 258 EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 0000122345556655543 33221 11224577899999887654322 22233332 899999988863 2211
Q ss_pred --C-CCCCCCcCEEEccCCCCccc-----CCcCCcccceEEeeccccc-ccC----chhHHhcccCCcccEEEccCCcCC
Q 044898 279 --Q-PPDQVTIPTVDLSHNMLSGQ-----ISPSFSTVQNLYLNNNRFT-GQV----PGSFVDHLLDASIQILYLQHNFLT 345 (396)
Q Consensus 279 --~-~~~~~~L~~L~ls~N~l~~~-----~~~~~~~L~~L~L~~N~l~-~~~----~~~~~~~~~~~~L~~L~L~~N~l~ 345 (396)
+ ....+.|+.+++........ .....+.|+.|.++++... ... ...-+.+ ..|+.+.|++....
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~---~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL---EGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc---cccceeeecCCCCc
Confidence 1 12567888888887765321 1223457889999877433 221 1111223 67888999988654
Q ss_pred -CCCCCCCCCCCccchhcccCc
Q 044898 346 -GIEINPTAEIPSSSSLCLQYN 366 (396)
Q Consensus 346 -~~~~~~~~~l~~L~~L~l~~N 366 (396)
+.....+...++|+.+++.+.
T Consensus 415 ~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 415 TDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hHHHHHHHhhCcccceeeeech
Confidence 344555666788888887765
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.34 E-value=0.0054 Score=52.69 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+|+.||++.++. . .+-..|+.++.+..|+++.|.+. ..|..+.....++.+++..|..+ ..|.+++..+++
T Consensus 42 kr~tvld~~s~r~-----v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 42 KRVTVLDLSSNRL-----V-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred ceeeeehhhhhHH-----H-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 5899999995432 2 23345777889999999999886 57888999999999999999998 889999999999
Q ss_pred CEEEeecCcCC
Q 044898 149 RTLDLSYNQLT 159 (396)
Q Consensus 149 ~~L~L~~n~l~ 159 (396)
+++++-.|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99999999866
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.16 E-value=0.18 Score=27.24 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=13.4
Q ss_pred CCCCCEEeccCCcCcccCCccc
Q 044898 238 LDQLNYLDLSLNQFNGNIPGRI 259 (396)
Q Consensus 238 l~~L~~L~l~~n~l~~~~p~~~ 259 (396)
+++|++|+|++|+++ .+|...
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 356777777777776 555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.16 E-value=0.18 Score=27.24 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=13.4
Q ss_pred CCCCCEEeccCCcCcccCCccc
Q 044898 238 LDQLNYLDLSLNQFNGNIPGRI 259 (396)
Q Consensus 238 l~~L~~L~l~~n~l~~~~p~~~ 259 (396)
+++|++|+|++|+++ .+|...
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 356777777777776 555543
No 81
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.29 E-value=2.7 Score=40.32 Aligned_cols=106 Identities=10% Similarity=0.005 Sum_probs=58.2
Q ss_pred ccCEEEccCCcccCcCCCC----CCCCcCEEEccCCCCcc-cCC-----------cCCcccceEEeecccccccCchhHH
Q 044898 263 PITNLQLQRNAFAGPVQPP----DQVTIPTVDLSHNMLSG-QIS-----------PSFSTVQNLYLNNNRFTGQVPGSFV 326 (396)
Q Consensus 263 ~L~~L~l~~n~l~~~~~~~----~~~~L~~L~ls~N~l~~-~~~-----------~~~~~L~~L~L~~N~l~~~~~~~~~ 326 (396)
.++++....|.+.+..... ...+.+.+++..-.-.. ..+ ....-+..+.++.+.+....-..+.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 5667777777766543322 33445555554332210 001 1122467788888888733333333
Q ss_pred hcccCCcccEEEccCCcCCCCCCCCCCC----CCccchhcccCccC
Q 044898 327 DHLLDASIQILYLQHNFLTGIEINPTAE----IPSSSSLCLQYNCM 368 (396)
Q Consensus 327 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~l 368 (396)
.+...+.++.|++++|.....+...+.+ --+++.+..+.|..
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 3333467999999999988765443332 23455566666643
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.61 E-value=0.087 Score=44.47 Aligned_cols=79 Identities=18% Similarity=0.100 Sum_probs=40.6
Q ss_pred CcCEEEccCCCCcccCCcCC---cccceEEeecccccccC-chhHHhcccCCcccEEEccCC-cCCCCCCCCCCCCCccc
Q 044898 285 TIPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQV-PGSFVDHLLDASIQILYLQHN-FLTGIEINPTAEIPSSS 359 (396)
Q Consensus 285 ~L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~-~~~~~~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 359 (396)
.++.+|.++..|..+-.+.+ ..++.|.+.++.--+.. -+-+.+. .++|+.|+|++| +||+-....+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~--~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGL--APSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhccc--ccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 45566666665554333333 23444555554321111 1112221 267777777766 46766666666677777
Q ss_pred hhcccC
Q 044898 360 SLCLQY 365 (396)
Q Consensus 360 ~L~l~~ 365 (396)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 766654
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.84 E-value=0.21 Score=26.43 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=5.7
Q ss_pred CCCcEEeccCCcCc
Q 044898 122 KNLRFFAISRNFVS 135 (396)
Q Consensus 122 ~~L~~L~L~~n~l~ 135 (396)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555555444
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.22 E-value=0.95 Score=24.59 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.6
Q ss_pred CcccEEEccCCcCCCC
Q 044898 332 ASIQILYLQHNFLTGI 347 (396)
Q Consensus 332 ~~L~~L~L~~N~l~~~ 347 (396)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 6789999999998876
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.83 E-value=0.21 Score=42.17 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=16.9
Q ss_pred CCCCEEEeecC-cCCCCCCcccCCCcCCcEEEccC
Q 044898 146 RGLRTLDLSYN-QLTGAIPQSIGTLPELSNVILCH 179 (396)
Q Consensus 146 ~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~ 179 (396)
++|+.|++++| +||..--..+..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45566666644 34433333444555555555543
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.19 E-value=0.56 Score=45.98 Aligned_cols=79 Identities=22% Similarity=0.174 Sum_probs=33.5
Q ss_pred CCcCCcEEEccCCc-ccccCCchhh---ccCCEEEccCCc-Cccc--CCCCCCCCCCcEEEcccCCCC--ccchhhhcCC
Q 044898 168 TLPELSNVILCHNK-LSGSVPPFLS---HALTRLDLKHND-LSGS--LAPDSLPPSVQYLSLSWNRLS--GPVDRLLSRL 238 (396)
Q Consensus 168 ~l~~L~~L~l~~n~-l~~~~p~~~~---~~L~~L~l~~n~-l~~~--~~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l 238 (396)
.+++|+.|+++.+. +++..-..+. ++|+.|.+.++. ++.. .......+.|++|+++++... ..+.....++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 34555556555555 3322111111 456666555444 2211 111111255666666655432 1122233445
Q ss_pred CCCCEEec
Q 044898 239 DQLNYLDL 246 (396)
Q Consensus 239 ~~L~~L~l 246 (396)
++++.|.+
T Consensus 321 ~~l~~l~~ 328 (482)
T KOG1947|consen 321 PNLRELKL 328 (482)
T ss_pred cchhhhhh
Confidence 55555443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.78 E-value=1 Score=24.36 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.4
Q ss_pred CcccEEEccCCcCCCCC
Q 044898 332 ASIQILYLQHNFLTGIE 348 (396)
Q Consensus 332 ~~L~~L~L~~N~l~~~~ 348 (396)
++|+.|++++|+++.++
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 57899999999999874
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.89 E-value=1.6 Score=24.04 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=12.7
Q ss_pred CcccEEEccCCcCCCC
Q 044898 332 ASIQILYLQHNFLTGI 347 (396)
Q Consensus 332 ~~L~~L~L~~N~l~~~ 347 (396)
++|++|||++|.|...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 5788888888888754
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=66.98 E-value=2.7 Score=41.05 Aligned_cols=111 Identities=22% Similarity=0.152 Sum_probs=70.7
Q ss_pred cCCCCCCEEEccCCcCccc--cchhhcCCCCCcEEeccCC-cCcccc----ccccCCCCCCCEEEeecCc-CCCCCCccc
Q 044898 95 GKLTSLAELSIVPGRVIGK--LPQSLSQLKNLRFFAISRN-FVSGEI----PAALGQLRGLRTLDLSYNQ-LTGAIPQSI 166 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~p~~~ 166 (396)
...+.|+.|.+.++.-... .-......++|+.|+++++ ...... ......+++|+.|+++++. ++...-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3468888888887743332 3345677889999999873 211111 1234556889999999887 554333333
Q ss_pred CC-CcCCcEEEccCCc-ccccCCchhh---ccCCEEEccCCcCc
Q 044898 167 GT-LPELSNVILCHNK-LSGSVPPFLS---HALTRLDLKHNDLS 205 (396)
Q Consensus 167 ~~-l~~L~~L~l~~n~-l~~~~p~~~~---~~L~~L~l~~n~l~ 205 (396)
.. +++|+.|.+.++. +++..-..+. +.|+.|+++.+...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 33 7889999977776 4433222222 67999999977653
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.32 E-value=24 Score=34.14 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=9.0
Q ss_pred CCEEEEEcCCCCC
Q 044898 69 DKVIALNLGDPRA 81 (396)
Q Consensus 69 ~~v~~L~L~~~~~ 81 (396)
.++.++|++.|.+
T Consensus 165 pr~r~~dls~npi 177 (553)
T KOG4242|consen 165 PRARQHDLSPNPI 177 (553)
T ss_pred chhhhhccCCCcc
Confidence 4678888886543
No 91
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=59.60 E-value=1.4 Score=28.07 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCC
Q 044898 371 PVQMQCPLRSGKQKT 385 (396)
Q Consensus 371 ~~~c~c~~~~~~~~~ 385 (396)
||.|+|.+.|+..+.
T Consensus 2 P~~CdC~l~~~~~w~ 16 (51)
T smart00082 2 PFICDCELRWLLRWL 16 (51)
T ss_pred CccCcCCchHHHHHH
Confidence 899999999976543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.60 E-value=6.7 Score=38.52 Aligned_cols=64 Identities=20% Similarity=0.151 Sum_probs=41.4
Q ss_pred CCCCcCEEEccCCCCcc-----cCCcCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCC
Q 044898 282 DQVTIPTVDLSHNMLSG-----QISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTG 346 (396)
Q Consensus 282 ~~~~L~~L~ls~N~l~~-----~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~ 346 (396)
..+.+..+.+++|++.. .+....++|+.|+|++|...-....++... +...|++|-+.+|.+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCcccc
Confidence 56778888899998753 233455788889999882221222233333 22568888899988865
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.52 E-value=5.1 Score=39.28 Aligned_cols=61 Identities=31% Similarity=0.402 Sum_probs=27.5
Q ss_pred CCCcEEEcccCCCCcc--chhhhcCCCCCCEEeccCC--cCcccCC--ccccCcccCEEEccCCcccC
Q 044898 215 PSVQYLSLSWNRLSGP--VDRLLSRLDQLNYLDLSLN--QFNGNIP--GRIFTFPITNLQLQRNAFAG 276 (396)
Q Consensus 215 ~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n--~l~~~~p--~~~~~~~L~~L~l~~n~l~~ 276 (396)
+.+..+.|++|++... +...-...++|+.|+|++| .+. ..+ ..++.+.|++|-+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcccc
Confidence 4455555556555322 1111223456666666666 222 111 11222355666666665544
No 94
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=56.80 E-value=10 Score=25.47 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=19.6
Q ss_pred CcchHHHHHHHHHHHHhhhhhccC
Q 044898 1 MANLSCIFFTAFLLQCTFLNVFAI 24 (396)
Q Consensus 1 m~~~~~~~~~~~~l~~~~~~~~~~ 24 (396)
|.++++.++++++|.-.|++++.+
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSda 24 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDA 24 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecC
Confidence 889999999999888887776654
No 95
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=33.45 E-value=43 Score=22.11 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHHHHHhhhhhccC
Q 044898 1 MANLSCIFFTAFLLQCTFLNVFAI 24 (396)
Q Consensus 1 m~~~~~~~~~~~~l~~~~~~~~~~ 24 (396)
||..++++.++.+..+.+++++..
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQ 24 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQ 24 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcc
Confidence 677666664333333334444433
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.32 E-value=34 Score=40.61 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=16.9
Q ss_pred cccCCCCccchhhhcCCCCCCEEeccCCcCc
Q 044898 222 LSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 222 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (396)
|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4555555555555555555555555555553
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.16 E-value=35 Score=18.06 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=5.5
Q ss_pred CCCcEEeccCC
Q 044898 122 KNLRFFAISRN 132 (396)
Q Consensus 122 ~~L~~L~L~~n 132 (396)
++|++|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.40 E-value=38 Score=40.30 Aligned_cols=32 Identities=31% Similarity=0.267 Sum_probs=27.3
Q ss_pred eccCCcCccccccccCCCCCCCEEEeecCcCC
Q 044898 128 AISRNFVSGEIPAALGQLRGLRTLDLSYNQLT 159 (396)
Q Consensus 128 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 159 (396)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999777778888999999999999775
No 99
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.23 E-value=1.3e+02 Score=18.34 Aligned_cols=8 Identities=38% Similarity=0.455 Sum_probs=3.4
Q ss_pred CCCcEEEc
Q 044898 215 PSVQYLSL 222 (396)
Q Consensus 215 ~~L~~L~L 222 (396)
++++.|.+
T Consensus 34 ~sl~~L~f 41 (44)
T PF05725_consen 34 NSLKSLSF 41 (44)
T ss_pred CCceEEEe
Confidence 34444443
Done!