Query 044898
Match_columns 396
No_of_seqs 492 out of 4043
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-45 6.9E-50 379.4 20.4 340 19-370 3-382 (768)
2 4eco_A Uncharacterized protein 100.0 8.1E-44 2.8E-48 359.7 22.8 330 25-369 27-501 (636)
3 1ogq_A PGIP-2, polygalacturona 100.0 3E-43 1E-47 325.5 21.9 287 24-367 2-302 (313)
4 4ecn_A Leucine-rich repeat pro 100.0 2.2E-41 7.4E-46 348.8 25.8 326 23-369 264-741 (876)
5 3v47_A TOLL-like receptor 5B a 100.0 7.6E-39 2.6E-43 311.2 23.3 310 57-378 6-413 (455)
6 3rgz_A Protein brassinosteroid 100.0 1.3E-38 4.4E-43 328.6 20.5 299 69-375 318-723 (768)
7 2id5_A Lingo-1, leucine rich r 100.0 1.3E-38 4.4E-43 311.6 18.6 312 60-383 12-343 (477)
8 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-36 4.2E-41 300.7 21.1 160 214-381 323-489 (520)
9 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-36 6.1E-41 302.3 21.3 297 69-381 52-518 (562)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-35 4.5E-40 298.7 26.3 144 234-385 419-570 (606)
11 3t6q_A CD180 antigen; protein- 100.0 9.9E-36 3.4E-40 299.6 18.4 300 70-383 255-570 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-35 1.8E-39 290.8 21.0 84 285-378 432-515 (549)
13 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-34 5.8E-39 291.6 23.5 303 70-384 53-591 (635)
14 3oja_B Anopheles plasmodium-re 100.0 4.5E-34 1.5E-38 286.7 25.1 312 48-382 8-367 (597)
15 1ziw_A TOLL-like receptor 3; i 100.0 3E-33 1E-37 285.2 28.4 308 70-385 249-635 (680)
16 4eco_A Uncharacterized protein 100.0 1.4E-34 4.7E-39 292.3 17.5 285 69-368 206-578 (636)
17 3o6n_A APL1; leucine-rich repe 100.0 1.3E-33 4.5E-38 268.9 23.1 294 69-383 45-362 (390)
18 4fcg_A Uncharacterized protein 100.0 1.6E-34 5.6E-39 268.5 13.4 270 23-348 22-317 (328)
19 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-33 8.6E-38 292.0 23.8 101 87-187 61-165 (844)
20 3t6q_A CD180 antigen; protein- 100.0 4.6E-33 1.6E-37 280.1 24.2 292 69-369 33-438 (606)
21 3v47_A TOLL-like receptor 5B a 100.0 7.6E-34 2.6E-38 276.0 17.5 270 98-370 30-385 (455)
22 3j0a_A TOLL-like receptor 5; m 100.0 5.9E-33 2E-37 289.2 23.7 303 59-370 14-376 (844)
23 2id5_A Lingo-1, leucine rich r 100.0 1.2E-32 4E-37 269.3 24.0 296 64-371 7-311 (477)
24 2z63_A TOLL-like receptor 4, v 100.0 1.4E-32 4.9E-37 274.4 25.0 301 69-382 52-540 (570)
25 3o6n_A APL1; leucine-rich repe 100.0 4E-33 1.4E-37 265.6 19.2 304 49-370 3-332 (390)
26 1ziw_A TOLL-like receptor 3; i 100.0 4.4E-32 1.5E-36 276.6 25.1 292 69-368 25-365 (680)
27 4ecn_A Leucine-rich repeat pro 100.0 1.4E-32 4.6E-37 283.4 19.2 284 69-368 448-818 (876)
28 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-32 1.8E-36 267.4 22.7 289 69-370 21-413 (520)
29 1xku_A Decorin; proteoglycan, 100.0 8.4E-31 2.9E-35 243.9 26.1 277 59-367 31-330 (330)
30 4fmz_A Internalin; leucine ric 100.0 8.3E-31 2.8E-35 245.6 25.1 279 69-369 66-346 (347)
31 2z80_A TOLL-like receptor 2, v 100.0 4.6E-32 1.6E-36 254.8 16.4 280 52-377 23-318 (353)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-31 9.2E-36 264.9 22.6 285 70-370 32-442 (562)
33 2ft3_A Biglycan; proteoglycan, 100.0 8.3E-31 2.8E-35 244.1 22.7 270 89-367 47-331 (332)
34 3oja_B Anopheles plasmodium-re 100.0 1.5E-31 5.1E-36 268.4 18.4 267 96-371 49-339 (597)
35 2z63_A TOLL-like receptor 4, v 100.0 6.6E-31 2.3E-35 262.4 21.9 293 69-369 28-434 (570)
36 3zyi_A Leucine-rich repeat-con 100.0 1.2E-30 4.1E-35 253.3 22.8 240 90-382 69-312 (452)
37 1xku_A Decorin; proteoglycan, 100.0 2E-30 7E-35 241.3 22.8 261 71-369 33-306 (330)
38 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-30 5.8E-35 242.0 20.6 261 98-369 33-307 (332)
39 2z81_A CD282 antigen, TOLL-lik 100.0 8.8E-31 3E-35 260.4 19.2 301 58-369 3-423 (549)
40 1o6v_A Internalin A; bacterial 100.0 7.3E-30 2.5E-34 248.7 24.6 279 69-370 68-389 (466)
41 4fmz_A Internalin; leucine ric 100.0 7.3E-30 2.5E-34 239.1 22.6 280 69-371 44-326 (347)
42 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-30 2.4E-34 256.9 23.9 135 69-208 32-169 (606)
43 3zyj_A Leucine-rich repeat-con 100.0 5.8E-30 2E-34 247.6 22.1 241 89-382 57-301 (440)
44 1o6v_A Internalin A; bacterial 100.0 1E-29 3.5E-34 247.6 23.3 261 69-350 90-393 (466)
45 2z66_A Variable lymphocyte rec 100.0 1.1E-30 3.9E-35 240.4 14.3 256 59-382 7-270 (306)
46 3bz5_A Internalin-J, INLJ; leu 100.0 2E-28 7E-33 237.3 27.7 271 69-370 42-353 (457)
47 3g06_A SSPH2 (leucine-rich rep 100.0 1.3E-29 4.6E-34 253.1 19.8 279 49-370 12-298 (622)
48 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-30 7.6E-35 239.2 12.9 230 98-374 50-286 (313)
49 4g8a_A TOLL-like receptor 4; l 100.0 9.5E-29 3.2E-33 249.5 23.5 144 89-234 45-192 (635)
50 3o53_A Protein LRIM1, AGAP0063 100.0 1.2E-30 4.1E-35 241.4 4.2 251 94-379 30-286 (317)
51 3bz5_A Internalin-J, INLJ; leu 100.0 9.4E-28 3.2E-32 232.7 22.5 264 88-374 32-304 (457)
52 1wwl_A Monocyte differentiatio 100.0 5.3E-30 1.8E-34 236.6 6.3 240 95-345 40-309 (312)
53 1jl5_A Outer protein YOPM; leu 100.0 2.9E-27 9.8E-32 229.1 25.5 247 98-370 131-410 (454)
54 1jl5_A Outer protein YOPM; leu 100.0 2.7E-28 9.1E-33 236.3 15.5 265 69-370 11-291 (454)
55 1ozn_A Reticulon 4 receptor; N 100.0 1E-27 3.6E-32 218.3 17.9 225 65-297 7-238 (285)
56 3oja_A Leucine-rich immune mol 100.0 4.6E-29 1.6E-33 243.9 9.4 243 123-380 35-289 (487)
57 3zyi_A Leucine-rich repeat-con 100.0 4E-27 1.4E-31 228.5 22.1 232 61-298 56-304 (452)
58 3zyj_A Leucine-rich repeat-con 100.0 7.5E-27 2.6E-31 225.8 23.5 231 61-297 45-292 (440)
59 4fcg_A Uncharacterized protein 100.0 1.6E-27 5.6E-32 221.3 18.0 233 96-369 79-314 (328)
60 1wwl_A Monocyte differentiatio 100.0 8.7E-29 3E-33 228.4 8.4 242 117-371 38-311 (312)
61 2z66_A Variable lymphocyte rec 99.9 4.9E-27 1.7E-31 216.0 17.6 202 69-276 28-237 (306)
62 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-27 8.7E-32 215.7 14.5 205 69-278 32-241 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-28 7.3E-33 226.3 7.5 238 69-349 34-280 (317)
64 2o6q_A Variable lymphocyte rec 99.9 4.5E-26 1.6E-30 205.8 21.0 214 56-298 2-219 (270)
65 2z80_A TOLL-like receptor 2, v 99.9 9.8E-27 3.3E-31 218.4 16.0 252 69-347 52-316 (353)
66 2z62_A TOLL-like receptor 4, v 99.9 2E-25 6.8E-30 202.2 17.7 221 102-377 11-241 (276)
67 1z7x_W Ribonuclease inhibitor; 99.9 2.6E-28 8.8E-33 237.3 -3.2 296 69-369 56-411 (461)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-24 1.2E-28 213.9 26.2 243 69-351 61-303 (622)
69 3oja_A Leucine-rich immune mol 99.9 2.1E-26 7.1E-31 225.1 9.4 232 96-340 32-270 (487)
70 1p9a_G Platelet glycoprotein I 99.9 1.4E-25 4.8E-30 204.6 14.3 132 94-252 6-137 (290)
71 1z7x_W Ribonuclease inhibitor; 99.9 1.7E-27 5.7E-32 231.6 -0.4 289 70-366 86-437 (461)
72 2o6q_A Variable lymphocyte rec 99.9 3.7E-24 1.2E-28 193.3 20.8 206 99-377 17-222 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5.1E-29 196.4 17.1 202 98-321 28-240 (276)
74 3m19_A Variable lymphocyte rec 99.9 4.7E-24 1.6E-28 190.4 14.5 189 57-254 3-194 (251)
75 4glp_A Monocyte differentiatio 99.9 5.1E-24 1.7E-28 196.3 14.6 226 97-346 63-308 (310)
76 3rfs_A Internalin B, repeat mo 99.9 8.8E-24 3E-28 191.0 15.7 205 95-328 38-245 (272)
77 3goz_A Leucine-rich repeat-con 99.9 6.4E-25 2.2E-29 206.8 6.7 242 83-347 7-299 (362)
78 3goz_A Leucine-rich repeat-con 99.9 7.8E-25 2.7E-29 206.2 5.7 252 102-370 2-298 (362)
79 4glp_A Monocyte differentiatio 99.9 8E-24 2.7E-28 195.0 11.6 200 96-297 89-307 (310)
80 2ast_B S-phase kinase-associat 99.9 2.5E-25 8.5E-30 207.3 0.6 258 60-353 38-314 (336)
81 1p9a_G Platelet glycoprotein I 99.9 2.9E-22 9.9E-27 182.6 20.6 181 69-261 10-193 (290)
82 2xwt_C Thyrotropin receptor; s 99.9 6.8E-23 2.3E-27 181.5 15.9 194 99-315 32-236 (239)
83 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4.1E-29 206.7 4.8 236 89-348 23-319 (386)
84 2xwt_C Thyrotropin receptor; s 99.9 1.7E-22 5.7E-27 179.0 17.9 194 69-271 31-235 (239)
85 3rfs_A Internalin B, repeat mo 99.9 1.3E-22 4.4E-27 183.3 16.7 179 69-256 41-222 (272)
86 3cvr_A Invasion plasmid antige 99.9 3.8E-23 1.3E-27 204.1 10.0 211 50-328 34-253 (571)
87 3m19_A Variable lymphocyte rec 99.9 7.1E-22 2.4E-26 176.2 16.8 180 171-379 15-199 (251)
88 4ay9_X Follicle-stimulating ho 99.9 7.4E-22 2.5E-26 184.9 16.9 236 59-315 9-256 (350)
89 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.1E-26 180.1 15.5 84 94-183 59-142 (308)
90 2o6s_A Variable lymphocyte rec 99.9 8.6E-22 3E-26 170.5 13.4 180 58-262 6-188 (208)
91 2ca6_A RAN GTPase-activating p 99.9 1.8E-23 6.1E-28 198.6 1.7 247 69-341 32-339 (386)
92 3cvr_A Invasion plasmid antige 99.9 3.5E-22 1.2E-26 197.3 10.8 217 123-385 60-292 (571)
93 1h6u_A Internalin H; cell adhe 99.9 3.3E-21 1.1E-25 177.2 16.4 148 94-252 37-186 (308)
94 2ast_B S-phase kinase-associat 99.9 8.4E-23 2.9E-27 190.1 4.4 242 99-372 48-309 (336)
95 3e6j_A Variable lymphocyte rec 99.8 4.4E-20 1.5E-24 162.2 16.4 166 51-256 11-176 (229)
96 2v9t_B SLIT homolog 2 protein 99.8 1.6E-20 5.4E-25 164.0 12.9 158 195-382 14-174 (220)
97 4ay9_X Follicle-stimulating ho 99.8 5.4E-21 1.9E-25 179.0 10.5 234 101-342 12-256 (350)
98 2xot_A Amphoterin-induced prot 99.8 7.4E-21 2.5E-25 178.8 9.7 179 173-380 21-209 (361)
99 2o6s_A Variable lymphocyte rec 99.8 5.7E-20 2E-24 159.0 13.6 129 101-253 10-138 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-20 1E-24 162.3 11.6 157 196-382 15-175 (220)
101 3ogk_B Coronatine-insensitive 99.8 8.5E-22 2.9E-26 197.3 -0.6 80 69-154 164-251 (592)
102 3ogk_B Coronatine-insensitive 99.8 1.4E-21 4.7E-26 195.8 0.7 294 70-371 139-528 (592)
103 2v9t_B SLIT homolog 2 protein 99.8 6.7E-19 2.3E-23 153.6 15.2 141 90-253 26-166 (220)
104 3e6j_A Variable lymphocyte rec 99.8 8.5E-19 2.9E-23 154.0 15.6 153 193-377 20-176 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 3.9E-23 152.1 15.1 155 73-256 15-170 (220)
106 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.9E-23 158.8 15.0 147 94-251 64-212 (291)
107 1h6t_A Internalin B; cell adhe 99.8 6E-19 2.1E-23 160.7 13.1 149 94-252 42-191 (291)
108 2xot_A Amphoterin-induced prot 99.8 4.5E-19 1.6E-23 166.6 12.1 162 90-253 33-203 (361)
109 1m9s_A Internalin B; cell inva 99.8 1.4E-18 5E-23 173.2 13.3 172 94-277 39-212 (605)
110 4b8c_D Glucose-repressible alc 99.8 6.9E-20 2.4E-24 187.0 3.0 232 25-272 129-369 (727)
111 4ezg_A Putative uncharacterize 99.8 2E-18 7E-23 147.9 11.1 151 95-252 41-194 (197)
112 1m9s_A Internalin B; cell inva 99.8 5.7E-18 1.9E-22 168.9 15.1 168 69-254 43-212 (605)
113 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.6E-23 156.7 8.8 147 96-252 17-163 (263)
114 2p1m_B Transport inhibitor res 99.8 3.6E-20 1.2E-24 185.5 -2.0 83 283-369 431-519 (594)
115 2p1m_B Transport inhibitor res 99.7 1.5E-19 5.3E-24 180.9 -2.6 81 283-366 455-541 (594)
116 1w8a_A SLIT protein; signaling 99.7 5.2E-18 1.8E-22 144.7 7.0 119 88-208 21-142 (192)
117 1dce_A Protein (RAB geranylger 99.7 1.1E-20 3.7E-25 187.3 -12.0 199 121-362 348-566 (567)
118 4ezg_A Putative uncharacterize 99.7 6.9E-17 2.4E-21 138.3 12.6 150 69-229 44-195 (197)
119 2wfh_A SLIT homolog 2 protein 99.7 4.9E-17 1.7E-21 138.7 10.5 73 304-383 77-149 (193)
120 1dce_A Protein (RAB geranylger 99.7 4.8E-20 1.6E-24 182.7 -9.5 202 94-339 345-567 (567)
121 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.7E-22 140.4 8.7 112 263-381 30-147 (192)
122 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.9E-21 142.7 13.4 150 93-254 36-187 (263)
123 2ell_A Acidic leucine-rich nuc 99.7 2.5E-16 8.7E-21 131.1 11.8 139 97-258 23-165 (168)
124 4b8c_D Glucose-repressible alc 99.7 2.2E-17 7.6E-22 168.5 5.3 187 98-294 173-369 (727)
125 2o6r_A Variable lymphocyte rec 99.6 8.3E-16 2.9E-20 129.2 11.3 112 98-209 28-141 (177)
126 2ell_A Acidic leucine-rich nuc 99.6 4.6E-16 1.6E-20 129.6 9.4 131 69-206 24-161 (168)
127 3sb4_A Hypothetical leucine ri 99.6 3.7E-16 1.3E-20 144.8 8.1 95 263-362 227-327 (329)
128 2je0_A Acidic leucine-rich nuc 99.6 8E-16 2.8E-20 125.4 8.4 127 98-247 17-148 (149)
129 2je0_A Acidic leucine-rich nuc 99.6 6.6E-16 2.3E-20 125.9 7.3 125 69-200 17-148 (149)
130 2wfh_A SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 127.1 11.7 115 89-206 24-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 2.9E-14 1E-18 119.7 13.5 133 100-256 9-141 (177)
132 1ds9_A Outer arm dynein; leuci 99.5 9E-17 3.1E-21 137.7 -5.4 152 94-252 14-185 (198)
133 3g39_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 117.1 11.2 108 72-187 12-119 (170)
134 3sb4_A Hypothetical leucine ri 99.5 2.2E-14 7.4E-19 132.9 9.2 236 97-339 48-328 (329)
135 1a9n_A U2A', U2A'; complex (nu 99.5 2.5E-14 8.6E-19 120.0 7.8 134 93-252 14-153 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 4.2E-14 1.5E-18 118.6 8.6 134 117-276 14-154 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 133.6 -4.8 137 117-257 13-158 (198)
138 3g39_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 115.6 9.8 88 283-377 29-119 (170)
139 2r9u_A Variable lymphocyte rec 99.5 2E-13 6.9E-18 114.2 11.1 106 72-185 15-120 (174)
140 4fdw_A Leucine rich hypothetic 99.5 3.8E-12 1.3E-16 120.7 20.6 255 98-367 113-381 (401)
141 2r9u_A Variable lymphocyte rec 99.4 4.8E-13 1.7E-17 111.8 9.9 87 284-377 33-122 (174)
142 4fdw_A Leucine rich hypothetic 99.4 1.1E-11 3.8E-16 117.5 19.5 236 120-369 111-358 (401)
143 2ifg_A High affinity nerve gro 99.4 8E-13 2.7E-17 123.2 11.2 109 59-185 8-118 (347)
144 3un9_A NLR family member X1; l 99.3 5.2E-14 1.8E-18 132.3 -3.4 159 98-256 72-256 (372)
145 3un9_A NLR family member X1; l 99.3 1.4E-13 4.9E-18 129.2 -2.2 39 215-253 155-197 (372)
146 4fs7_A Uncharacterized protein 99.2 6E-10 2E-14 105.5 20.2 278 70-366 72-376 (394)
147 2ifg_A High affinity nerve gro 99.2 2.4E-11 8.1E-16 113.1 10.2 104 101-206 11-117 (347)
148 4fs7_A Uncharacterized protein 99.0 1E-08 3.5E-13 97.0 17.1 263 92-366 65-353 (394)
149 2ra8_A Uncharacterized protein 98.9 3.6E-10 1.2E-14 105.3 3.8 102 69-178 107-227 (362)
150 4gt6_A Cell surface protein; l 98.9 7.4E-08 2.5E-12 91.1 19.8 113 86-201 75-191 (394)
151 4gt6_A Cell surface protein; l 98.8 2.7E-07 9.2E-12 87.2 19.6 266 92-368 57-369 (394)
152 2ra8_A Uncharacterized protein 98.8 8.5E-09 2.9E-13 96.0 7.8 100 98-200 107-227 (362)
153 1io0_A Tropomodulin; LRR prote 98.7 2.9E-09 9.8E-14 89.7 1.5 118 87-204 25-163 (185)
154 4h09_A Hypothetical leucine ri 98.6 1.2E-05 4.1E-10 75.3 22.2 276 70-366 47-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 1.3E-08 4.3E-13 85.7 -0.2 114 69-183 36-164 (185)
156 3rfe_A Platelet glycoprotein I 98.5 1.8E-08 6.2E-13 79.3 0.4 66 309-383 12-78 (130)
157 3rw6_A Nuclear RNA export fact 98.4 3.6E-08 1.2E-12 87.3 0.9 67 119-187 167-237 (267)
158 3rw6_A Nuclear RNA export fact 98.4 1.9E-07 6.4E-12 82.7 4.4 80 95-176 167-257 (267)
159 4h09_A Hypothetical leucine ri 98.3 6.6E-05 2.3E-09 70.2 20.9 269 69-357 69-357 (379)
160 3e4g_A ATP synthase subunit S, 98.2 5E-07 1.7E-11 74.3 3.0 83 99-181 62-150 (176)
161 3e4g_A ATP synthase subunit S, 97.9 6.5E-06 2.2E-10 67.7 4.3 86 69-159 61-153 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 5.2E-06 1.8E-10 69.6 1.9 91 90-180 33-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 2.3E-05 7.9E-10 65.6 0.3 61 284-344 98-169 (197)
164 3rfe_A Platelet glycoprotein I 97.1 0.0009 3.1E-08 52.2 6.6 57 195-252 11-68 (130)
165 2lz0_A Uncharacterized protein 59.5 13 0.00043 26.8 4.5 45 110-155 8-52 (100)
166 2lz0_A Uncharacterized protein 41.1 39 0.0013 24.1 4.6 47 133-180 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-45 Score=379.37 Aligned_cols=340 Identities=27% Similarity=0.363 Sum_probs=251.6
Q ss_pred hhhccCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcceeEeCCCCEEEEEcCCCCCCCCCCcee---cC----
Q 044898 19 LNVFAILDPVDFLALQAIRKSLDDLPGSNFFASWDFTSDPCNFAGVYCDADKVIALNLGDPRAGSPGLTGR---LD---- 91 (396)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~~~~C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~---l~---- 91 (396)
+++++...++|++||++||+++.+ |. .+++|..+.|||.|.||+|+.++|++|+|++ .++.|. +|
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~~-~~--~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~-----~~l~g~~~~l~~~l~ 74 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLPD-KN--LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSS-----KPLNVGFSAVSSSLL 74 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCSC-TT--SSTTCCTTSCGGGSTTEEEETTEEEEEECTT-----SCCCEEHHHHHHHTT
T ss_pred cCccccCCHHHHHHHHHHHhhCCC-cc--cccCCCCCCCCcCCcceEECCCcEEEEECCC-----CCcCCccCccChhHh
Confidence 344555567899999999999985 43 6899987789999999999989999999994 456665 44
Q ss_pred -------------------ccccCCCCCCEEEccCCcCccccch--hhcCCCCCcEEeccCCcCcccccccc-CCCCCCC
Q 044898 92 -------------------PAIGKLTSLAELSIVPGRVIGKLPQ--SLSQLKNLRFFAISRNFVSGEIPAAL-GQLRGLR 149 (396)
Q Consensus 92 -------------------~~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~ 149 (396)
..++++++|++|++++|.+++.+|. .++++++|++|++++|.+.+.+|..+ .++++|+
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 4566667777777777777776666 67777777777777777776666554 6677777
Q ss_pred EEEeecCcCCCCCCcc---cCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCC
Q 044898 150 TLDLSYNQLTGAIPQS---IGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNR 226 (396)
Q Consensus 150 ~L~L~~n~l~~~~p~~---~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 226 (396)
+|++++|++++..|.. +.++++|++|++++|.+.+..|....++|++|++++|.+.+.++.....++|++|++++|.
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence 7777777777666655 6777777777777777776666544477888888888877766654444788888888888
Q ss_pred CCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCC--C-CCCcCEEEccCCCCcccCCcC
Q 044898 227 LSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPP--D-QVTIPTVDLSHNMLSGQISPS 303 (396)
Q Consensus 227 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~--~-~~~L~~L~ls~N~l~~~~~~~ 303 (396)
+++.+|..+..+++|++|++++|.+++.+|.. ...+|++|++++|.+++.+|.. . +++|++|++++|.+++.+|..
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence 88777888888888888888888887766665 3337888888888887766654 2 377888888888888777765
Q ss_pred C---cccceEEeecccccccCchh-HHhcccCCcccEEEccCCcCCCCCCCCCCCCC-ccchhcccCccCCC
Q 044898 304 F---STVQNLYLNNNRFTGQVPGS-FVDHLLDASIQILYLQHNFLTGIEINPTAEIP-SSSSLCLQYNCMVP 370 (396)
Q Consensus 304 ~---~~L~~L~L~~N~l~~~~~~~-~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~ 370 (396)
+ ++|+.|++++|.+++.+|.. +..+ ++|++|++++|++++..+..+..++ +|+.|++++|.+.+
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKM---RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTC---TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcC---CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 4 46778888888888777765 6666 7888888888888755566666665 78888888887764
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-44 Score=359.71 Aligned_cols=330 Identities=22% Similarity=0.335 Sum_probs=259.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCC-------CCCCCCCCCCCCc---ceeEeCC-CCEEEEEcCCCCCCCCCCceecCcc
Q 044898 25 LDPVDFLALQAIRKSLDDLPGSNF-------FASWDFTSDPCNF---AGVYCDA-DKVIALNLGDPRAGSPGLTGRLDPA 93 (396)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~-------~~~W~~~~~~C~w---~gv~c~~-~~v~~L~L~~~~~~~~~l~~~l~~~ 93 (396)
....|+.||.+++++++.+ .|.. ..+|+.+.++|.| .||+|+. ++|++|+|+ ++++.|.+|++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~-~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~-----~~~l~g~lp~~ 100 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGK-NWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLE-----GFGASGRVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGG-GCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECT-----TSCCEEEECGG
T ss_pred hHHHHHHHHHHHHHHcCCC-CcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEec-----CcccCCcCChH
Confidence 3357999999999998763 2321 2379988999999 9999976 799999999 57899999999
Q ss_pred ccCCCCCCEEEccCCc----------------------------------------------------------------
Q 044898 94 IGKLTSLAELSIVPGR---------------------------------------------------------------- 109 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~---------------------------------------------------------------- 109 (396)
++++++|++|++++|.
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 9999999999999884
Q ss_pred --------------CccccchhhcCCCCCcEEeccCCcCccc-----------------cccccC--CCCCCCEEEeecC
Q 044898 110 --------------VIGKLPQSLSQLKNLRFFAISRNFVSGE-----------------IPAALG--QLRGLRTLDLSYN 156 (396)
Q Consensus 110 --------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n 156 (396)
+++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 344 788999999999999999999985 899999 9999999999999
Q ss_pred cCCCCCCcccCCCcCCcEEEccCCc-ccc-cCCchhh--------ccCCEEEccCCcCcccCCC---CCCCCCCcEEEcc
Q 044898 157 QLTGAIPQSIGTLPELSNVILCHNK-LSG-SVPPFLS--------HALTRLDLKHNDLSGSLAP---DSLPPSVQYLSLS 223 (396)
Q Consensus 157 ~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~--------~~L~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~ 223 (396)
++.+.+|..+.++++|++|++++|+ +++ .+|..+. ++|++|++++|.++ .+|. ....++|++|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc
Confidence 9999999999999999999999998 988 7887664 68999999999998 4443 3445889999999
Q ss_pred cCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-c-cCEEEccCCcccCcCCCC----CCCCcCEEEccCCCCc
Q 044898 224 WNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-P-ITNLQLQRNAFAGPVQPP----DQVTIPTVDLSHNMLS 297 (396)
Q Consensus 224 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~-L~~L~l~~n~l~~~~~~~----~~~~L~~L~ls~N~l~ 297 (396)
+|+++|.+| .+..+++|++|++++|+++ .+|..+... + |++|++++|.++. +|.. .+++|++|++++|.++
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCC
Confidence 999987888 7888888888888888887 777777665 5 8888888888874 3332 2336788888888887
Q ss_pred ccCCcCCc----------ccceEEeecccccccCchhH-HhcccCCcccEEEccCCcCCCCCCCCCCCCC-------ccc
Q 044898 298 GQISPSFS----------TVQNLYLNNNRFTGQVPGSF-VDHLLDASIQILYLQHNFLTGIEINPTAEIP-------SSS 359 (396)
Q Consensus 298 ~~~~~~~~----------~L~~L~L~~N~l~~~~~~~~-~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~ 359 (396)
+.+|..++ +|+.|++++|+++ .+|..+ ..+ ++|++|+|++|+++.++...+.... +|+
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l---~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTG---SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTT---CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccC---CCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 77666554 5777777777777 444443 334 5666666666666655444433222 555
Q ss_pred hhcccCccCC
Q 044898 360 SLCLQYNCMV 369 (396)
Q Consensus 360 ~L~l~~N~l~ 369 (396)
.|++++|.++
T Consensus 492 ~L~Ls~N~l~ 501 (636)
T 4eco_A 492 SIDLRFNKLT 501 (636)
T ss_dssp EEECCSSCCC
T ss_pred EEECcCCcCC
Confidence 5555555444
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3e-43 Score=325.47 Aligned_cols=287 Identities=29% Similarity=0.482 Sum_probs=224.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC--cceeEeCC----CCEEEEEcCCCCCCCCCCce--ecCcccc
Q 044898 24 ILDPVDFLALQAIRKSLDDLPGSNFFASWDFTSDPCN--FAGVYCDA----DKVIALNLGDPRAGSPGLTG--RLDPAIG 95 (396)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~~~~C~--w~gv~c~~----~~v~~L~L~~~~~~~~~l~~--~l~~~~~ 95 (396)
.|.++|.+||++||+++.+ +. .+++|..+.++|. |.||.|+. ++|++|+|+ ++.+.| .+|+.++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~-~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~-----~~~l~~~~~~~~~l~ 73 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN-PT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS-----GLNLPKPYPIPSSLA 73 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC-CG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEE-----CCCCSSCEECCGGGG
T ss_pred CCCHHHHHHHHHHHHhcCC-cc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECC-----CCCccCCcccChhHh
Confidence 5788999999999999975 32 5789987789998 99999985 689999999 467888 8999999
Q ss_pred CCCCCCEEEccC-CcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcE
Q 044898 96 KLTSLAELSIVP-GRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSN 174 (396)
Q Consensus 96 ~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 174 (396)
++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 999999999995 9999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEccCCcccccCCchhh--c-cCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcC
Q 044898 175 VILCHNKLSGSVPPFLS--H-ALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQF 251 (396)
Q Consensus 175 L~l~~n~l~~~~p~~~~--~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 251 (396)
|++++|++++.+|..+. . +|+.|++++| ++++.+|..+..++ |++|++++|.+
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-----------------------~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRN-----------------------RLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSS-----------------------EEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCC-----------------------eeeccCChHHhCCc-ccEEECcCCcc
Confidence 99999999888887665 2 4444444444 44444444454444 55555555555
Q ss_pred cccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCc--CCcccceEEeecccccccCchhHHhcc
Q 044898 252 NGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISP--SFSTVQNLYLNNNRFTGQVPGSFVDHL 329 (396)
Q Consensus 252 ~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~--~~~~L~~L~L~~N~l~~~~~~~~~~~~ 329 (396)
++..|..+.. +++|+.|++++|.+++.++. .+++|++|++++|++++.+|..+..+
T Consensus 210 ~~~~~~~~~~---------------------l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l- 267 (313)
T 1ogq_A 210 EGDASVLFGS---------------------DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL- 267 (313)
T ss_dssp EECCGGGCCT---------------------TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC-
T ss_pred cCcCCHHHhc---------------------CCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC-
Confidence 5444444333 23333333333333333222 34578888888888888888888887
Q ss_pred cCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCcc
Q 044898 330 LDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNC 367 (396)
Q Consensus 330 ~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 367 (396)
++|++|+|++|++++..+.. ..+++|+.+++++|+
T Consensus 268 --~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 268 --KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp --TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred --cCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 89999999999999654443 779999999999993
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-41 Score=348.84 Aligned_cols=326 Identities=21% Similarity=0.305 Sum_probs=250.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCC-----CCC--CCc------------ceeEeCC-CCEEEEEcCCCCCC
Q 044898 23 AILDPVDFLALQAIRKSLDDLPGSNFFASWDFT-----SDP--CNF------------AGVYCDA-DKVIALNLGDPRAG 82 (396)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~-----~~~--C~w------------~gv~c~~-~~v~~L~L~~~~~~ 82 (396)
++....|+.||++||+++.+ + +|..+ .+| |.| .||.|+. ++|+.|+|+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~-~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls----- 331 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDG-K------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLA----- 331 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTG-G------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECT-----
T ss_pred cccchHHHHHHHHHHHHcCC-C------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECc-----
Confidence 33445799999999999975 2 45432 366 999 9999985 899999999
Q ss_pred CCCCceecCccccCCCCCCEEEc-cCCcCccc------------------------------------------------
Q 044898 83 SPGLTGRLDPAIGKLTSLAELSI-VPGRVIGK------------------------------------------------ 113 (396)
Q Consensus 83 ~~~l~~~l~~~~~~l~~L~~L~l-~~n~l~~~------------------------------------------------ 113 (396)
++++.|.+|++++++++|++|+| ++|.+.|.
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 57899999999999999999999 77754333
Q ss_pred ----------------------------cchhhcCCCCCcEEeccCCcCcc-----------------ccccccC--CCC
Q 044898 114 ----------------------------LPQSLSQLKNLRFFAISRNFVSG-----------------EIPAALG--QLR 146 (396)
Q Consensus 114 ----------------------------~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~ 146 (396)
+|..|.++++|++|+|++|.+++ .+|..++ +++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 78899999999999999999998 3899988 999
Q ss_pred CCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCc-ccc-cCCchhh--c-------cCCEEEccCCcCcccCCC---CC
Q 044898 147 GLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNK-LSG-SVPPFLS--H-------ALTRLDLKHNDLSGSLAP---DS 212 (396)
Q Consensus 147 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~--~-------~L~~L~l~~n~l~~~~~~---~~ 212 (396)
+|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+. . +|+.|++++|.+. .+|. ..
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 99999999999999999999999999999999998 887 7887665 4 8999999999998 4544 34
Q ss_pred CCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-c-cCEEEccCCcccCcCCCC----CCCCc
Q 044898 213 LPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-P-ITNLQLQRNAFAGPVQPP----DQVTI 286 (396)
Q Consensus 213 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~-L~~L~l~~n~l~~~~~~~----~~~~L 286 (396)
..++|+.|++++|+++ .+| .++.+++|++|++++|+++ .+|..+... + |++|++++|.++. +|.. ..++|
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L 646 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM 646 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCE
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCC
Confidence 4588999999999988 666 8888889999999999988 788777766 5 8888888888874 3332 22347
Q ss_pred CEEEccCCCCcccCCcCC--------cccceEEeecccccccCchhHH-hcccCCcccEEEccCCcCCCCCCCCCCCC--
Q 044898 287 PTVDLSHNMLSGQISPSF--------STVQNLYLNNNRFTGQVPGSFV-DHLLDASIQILYLQHNFLTGIEINPTAEI-- 355 (396)
Q Consensus 287 ~~L~ls~N~l~~~~~~~~--------~~L~~L~L~~N~l~~~~~~~~~-~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-- 355 (396)
+.|++++|.+++.+|... .+|+.|++++|.++ .+|..+. .+ ++|+.|+|++|+|+.++...+...
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l---~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATG---SPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTT---CCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccC---CCCCEEECCCCcCCccChHHhccccc
Confidence 788888888776554311 25666777777766 4554443 33 556666666666665544333322
Q ss_pred -----CccchhcccCccCC
Q 044898 356 -----PSSSSLCLQYNCMV 369 (396)
Q Consensus 356 -----~~L~~L~l~~N~l~ 369 (396)
++|+.|+|++|.++
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC
T ss_pred cccccCCccEEECCCCCCc
Confidence 24555555555444
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-39 Score=311.23 Aligned_cols=310 Identities=20% Similarity=0.236 Sum_probs=260.2
Q ss_pred CCCCcce--eEeCC----------CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCcccc-chhhcCCCC
Q 044898 57 DPCNFAG--VYCDA----------DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKL-PQSLSQLKN 123 (396)
Q Consensus 57 ~~C~w~g--v~c~~----------~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~ 123 (396)
..|.|.+ +.|.. .++++|+|++ +.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~ 80 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSL-----NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS-----SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecC-----CccCcCChhHhccCccccEEECcCCcccceECccccccccc
Confidence 4455444 66664 4689999994 6778878889999999999999999987655 567899999
Q ss_pred CcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcc--cCCCcCCcEEEccCCcccccCCch-hh--ccCCEEE
Q 044898 124 LRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQS--IGTLPELSNVILCHNKLSGSVPPF-LS--HALTRLD 198 (396)
Q Consensus 124 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-~~--~~L~~L~ 198 (396)
|++|++++|.+++..|..|.++++|++|++++|++++..+.. +..+++|++|++++|++++..|.. +. ++|++|+
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 999999999999888999999999999999999998755554 889999999999999999777776 33 7899999
Q ss_pred ccCCcCcccCCCCC-----------------------------------CCCCCcEEEcccCCCCccchhhhcC------
Q 044898 199 LKHNDLSGSLAPDS-----------------------------------LPPSVQYLSLSWNRLSGPVDRLLSR------ 237 (396)
Q Consensus 199 l~~n~l~~~~~~~~-----------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~------ 237 (396)
+++|.+.+..+... ..++|++|++++|++++..|..+..
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 99999887655311 1156899999999888766655432
Q ss_pred ---------------------------------CCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCC--
Q 044898 238 ---------------------------------LDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP-- 281 (396)
Q Consensus 238 ---------------------------------l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~-- 281 (396)
.++|++|++++|.+++..|..+... +|++|++++|.+++..+..
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 2589999999999998888888776 9999999999999876543
Q ss_pred CCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCcc
Q 044898 282 DQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSS 358 (396)
Q Consensus 282 ~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 358 (396)
.+++|++|++++|.+++..+.. +++|+.|++++|++++..|..|..+ ++|++|+|++|++++++...+..+++|
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL---PNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc---ccccEEECCCCccccCCHhHhccCCcc
Confidence 7899999999999998877655 5689999999999998889999888 999999999999999988888999999
Q ss_pred chhcccCccCCCCCCCCCCC
Q 044898 359 SSLCLQYNCMVPPVQMQCPL 378 (396)
Q Consensus 359 ~~L~l~~N~l~~~~~c~c~~ 378 (396)
+.|++++| ++.|+|+.
T Consensus 398 ~~L~l~~N----~l~~~~~~ 413 (455)
T 3v47_A 398 QKIWLHTN----PWDCSCPR 413 (455)
T ss_dssp CEEECCSS----CBCCCTTT
T ss_pred cEEEccCC----CcccCCCc
Confidence 99999999 77799983
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-38 Score=328.63 Aligned_cols=299 Identities=30% Similarity=0.465 Sum_probs=238.2
Q ss_pred CCEEEEEcCCCCCCCCCCceecCcc-ccCCCCCCEEEccCCcCccccchhhcC---------------------------
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPA-IGKLTSLAELSIVPGRVIGKLPQSLSQ--------------------------- 120 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~--------------------------- 120 (396)
.+++.|++++ +.+.|.+|.. +.++++|++|++++|.+++.+|..+.+
T Consensus 318 ~~L~~L~L~~-----n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 318 SLLESLALSS-----NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp TTCCEEECCS-----SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred CCccEEECCC-----CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 4667777773 4555555554 556666666666666555555444433
Q ss_pred CCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEE
Q 044898 121 LKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLD 198 (396)
Q Consensus 121 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~ 198 (396)
+++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+. ++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 45666667777777667777788888888888888888888888888888888888888888888887776 7888888
Q ss_pred ccCCcCcccCCCCC-CCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccC
Q 044898 199 LKHNDLSGSLAPDS-LPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAG 276 (396)
Q Consensus 199 l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~ 276 (396)
+++|.+.+..|... ..++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+... +|++|++++|.+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 88888887776522 23889999999999988888889999999999999999988888888876 89999999998887
Q ss_pred cCCCC------------------------------------------------------------------------CCC
Q 044898 277 PVQPP------------------------------------------------------------------------DQV 284 (396)
Q Consensus 277 ~~~~~------------------------------------------------------------------------~~~ 284 (396)
.+|.. .++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 55531 235
Q ss_pred CcCEEEccCCCCcccCCcCC---cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchh
Q 044898 285 TIPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSL 361 (396)
Q Consensus 285 ~L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 361 (396)
+|+.||+++|+++|.+|..+ ++|+.|+|++|+++|.+|..+..+ ++|++|||++|++++..+..+..+++|++|
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L---~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL---RGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC---TTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC---CCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 78999999999999999765 468899999999999999999998 999999999999998878889999999999
Q ss_pred cccCccCCCCCCCC
Q 044898 362 CLQYNCMVPPVQMQ 375 (396)
Q Consensus 362 ~l~~N~l~~~~~c~ 375 (396)
++++|+++|++...
T Consensus 710 ~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCSSEEEEECCSS
T ss_pred ECcCCcccccCCCc
Confidence 99999998776544
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=311.55 Aligned_cols=312 Identities=20% Similarity=0.192 Sum_probs=274.7
Q ss_pred CcceeEeCC-----------CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEe
Q 044898 60 NFAGVYCDA-----------DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFA 128 (396)
Q Consensus 60 ~w~gv~c~~-----------~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 128 (396)
.|..|.|.. .+++.|+|+ .+.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~-----~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLG-----KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECC-----SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECC-----CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 356777763 368899999 4678888888999999999999999999998899999999999999
Q ss_pred ccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcc
Q 044898 129 ISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSG 206 (396)
Q Consensus 129 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~ 206 (396)
|++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+. ++|+.|++++|.+.+
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 999999977667789999999999999999988889999999999999999999977777776 899999999999986
Q ss_pred cCCC-CCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCC--CCC
Q 044898 207 SLAP-DSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQ--PPD 282 (396)
Q Consensus 207 ~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~--~~~ 282 (396)
..+. ....++|+.|++++|.+++..+..|..+++|++|++++|.+.+.+|...... +|++|++++|.+++..+ ...
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 5443 2334899999999999999888899999999999999999888888766654 99999999999986442 247
Q ss_pred CCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccc
Q 044898 283 QVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSS 359 (396)
Q Consensus 283 ~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 359 (396)
+++|+.|++++|.+++..+.. +++|+.|++++|++++..|..|..+ ++|++|+|++|+|+.++...|..+++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL---NYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC---TTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc---ccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 899999999999999776654 4679999999999999989999888 9999999999999999888889999999
Q ss_pred hhcccCccCCCCCCCCCCCCCCCC
Q 044898 360 SLCLQYNCMVPPVQMQCPLRSGKQ 383 (396)
Q Consensus 360 ~L~l~~N~l~~~~~c~c~~~~~~~ 383 (396)
.|++++| +|.|+|.+.|...
T Consensus 324 ~L~l~~N----~l~c~c~~~~~~~ 343 (477)
T 2id5_A 324 TLILDSN----PLACDCRLLWVFR 343 (477)
T ss_dssp EEECCSS----CEECSGGGHHHHT
T ss_pred EEEccCC----CccCccchHhHHh
Confidence 9999999 8889999888543
No 8
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=300.66 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=140.1
Q ss_pred CCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcc--cCCccccCc-ccCEEEccCCcccCcCCC---CCCCCcC
Q 044898 214 PPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNG--NIPGRIFTF-PITNLQLQRNAFAGPVQP---PDQVTIP 287 (396)
Q Consensus 214 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~~-~L~~L~l~~n~l~~~~~~---~~~~~L~ 287 (396)
.++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+... +|++|++++|.+++..|. ..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 3788999999999998888889999999999999999986 555666665 899999999999884443 3678999
Q ss_pred EEEccCCCCcccCCcCC-cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCc
Q 044898 288 TVDLSHNMLSGQISPSF-STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYN 366 (396)
Q Consensus 288 ~L~ls~N~l~~~~~~~~-~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 366 (396)
+|++++|.+++..|..+ ++|+.|++++|+++ .+|..+..+ ++|++|++++|+++.++...+..+++|+.+++++|
T Consensus 403 ~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKL---EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp EEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcC---CCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 99999999998888877 58999999999999 888888777 99999999999999997777889999999999999
Q ss_pred cCCCCCCCCCCCCCC
Q 044898 367 CMVPPVQMQCPLRSG 381 (396)
Q Consensus 367 ~l~~~~~c~c~~~~~ 381 (396)
++.|+|+..|+
T Consensus 479 ----~~~c~c~~~~~ 489 (520)
T 2z7x_B 479 ----PWDCSCPRIDY 489 (520)
T ss_dssp ----CBCCCHHHHHH
T ss_pred ----CCcccCCchHH
Confidence 78899998776
No 9
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-36 Score=302.27 Aligned_cols=297 Identities=22% Similarity=0.288 Sum_probs=227.2
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|++++ +.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|
T Consensus 52 ~~L~~L~Ls~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQ-----NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASL 123 (562)
T ss_dssp TTCCEEECCS-----SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTC
T ss_pred CCcCEEECCC-----CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccC
Confidence 4677888884 4556555667777888888888888877777777777778888888877777 45554 67777
Q ss_pred CEEEeecCcCCC-CCCcccCCCcCCcEEEccCCcccc-------------------------cCCchhh-----------
Q 044898 149 RTLDLSYNQLTG-AIPQSIGTLPELSNVILCHNKLSG-------------------------SVPPFLS----------- 191 (396)
Q Consensus 149 ~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~-------------------------~~p~~~~----------- 191 (396)
++|++++|++++ ..|..|.++++|++|++++|++++ ..|..+.
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 777777777775 235677777777777777776542 1111110
Q ss_pred ------------------------------------------------------------------------ccCCEEEc
Q 044898 192 ------------------------------------------------------------------------HALTRLDL 199 (396)
Q Consensus 192 ------------------------------------------------------------------------~~L~~L~l 199 (396)
.+|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 14555555
Q ss_pred cCCcCcccCCCC------------------------------------------------------CCCCCCcEEEcccC
Q 044898 200 KHNDLSGSLAPD------------------------------------------------------SLPPSVQYLSLSWN 225 (396)
Q Consensus 200 ~~n~l~~~~~~~------------------------------------------------------~~~~~L~~L~L~~n 225 (396)
++|.+.+.+|.. ...++|++|++++|
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence 556555444432 12368899999999
Q ss_pred CCCccchhhhcCCCCCCEEeccCCcCcc--cCCccccCc-ccCEEEccCCcccCcCCC---CCCCCcCEEEccCCCCccc
Q 044898 226 RLSGPVDRLLSRLDQLNYLDLSLNQFNG--NIPGRIFTF-PITNLQLQRNAFAGPVQP---PDQVTIPTVDLSHNMLSGQ 299 (396)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~~-~L~~L~l~~n~l~~~~~~---~~~~~L~~L~ls~N~l~~~ 299 (396)
++++..|..+..+++|++|++++|++++ .+|..+... +|++|++++|.+++..+. ..+++|++|++++|.+++.
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 9998888899999999999999999985 334556665 899999999999985543 3678999999999999988
Q ss_pred CCcCC-cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCCC
Q 044898 300 ISPSF-STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCPL 378 (396)
Q Consensus 300 ~~~~~-~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~~ 378 (396)
+|..+ ++|+.|++++|+++ .+|..+..+ ++|++|+|++|+|++++...+..+++|+.+++++| ||.|+|+.
T Consensus 444 ~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N----~~~c~c~~ 515 (562)
T 3a79_B 444 VFRCLPPKVKVLDLHNNRIM-SIPKDVTHL---QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN----PWDCTCPG 515 (562)
T ss_dssp GGSSCCTTCSEEECCSSCCC-CCCTTTTSS---CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC----CBCCCHHH
T ss_pred hhhhhcCcCCEEECCCCcCc-ccChhhcCC---CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC----CcCCCcch
Confidence 88887 58999999999999 788777776 89999999999999997777889999999999999 88899998
Q ss_pred CCC
Q 044898 379 RSG 381 (396)
Q Consensus 379 ~~~ 381 (396)
.|+
T Consensus 516 ~~~ 518 (562)
T 3a79_B 516 IRY 518 (562)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-35 Score=298.69 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=106.0
Q ss_pred hhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCc-CCC--CCCCCcCEEEccCCCCcccCCcCC---cc
Q 044898 234 LLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGP-VQP--PDQVTIPTVDLSHNMLSGQISPSF---ST 306 (396)
Q Consensus 234 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~-~~~--~~~~~L~~L~ls~N~l~~~~~~~~---~~ 306 (396)
.+..+++|++|++++|.+++..|..+... +|++|++++|.+++. .+. ..+++|++|++++|.+++..|..+ ++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 44455555555555555555555555554 677777777777662 232 367788888888888887776544 57
Q ss_pred cceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCC-ccchhcccCccCCCCCCCCCCCCCCCCCC
Q 044898 307 VQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIP-SSSSLCLQYNCMVPPVQMQCPLRSGKQKT 385 (396)
Q Consensus 307 L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~c~c~~~~~~~~~ 385 (396)
|+.|++++|++++..|..+..+ ++|++|+|++|+|+.++.. +..++ +|+.+++++| ||.|+|+..|+..|.
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N----~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQL---YSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNN----SVACICEHQKFLQWV 570 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTC---TTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSC----CCCCSSTTHHHHTTT
T ss_pred CCEEECCCCcCCCcCHHHccCC---CcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCC----CcccCCccHHHHHHH
Confidence 8889999999988888888887 8899999999999987655 77776 5999999999 888999987755443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.9e-36 Score=299.58 Aligned_cols=300 Identities=20% Similarity=0.205 Sum_probs=262.8
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCC
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLR 149 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 149 (396)
.++.|++++ +.+.+..+..|+++++|++|++++|.++ .+|..+.++++|++|++++|.+++..|..+..+++|+
T Consensus 255 ~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 255 SVESINLQK-----HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp EEEEEECTT-----CCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred ceeEEEeec-----CccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 789999994 5677777778999999999999999998 6788899999999999999999988888999999999
Q ss_pred EEEeecCcCCCCCCc-ccCCCcCCcEEEccCCcccccC--Cchhh--ccCCEEEccCCcCcccCCCCC-CCCCCcEEEcc
Q 044898 150 TLDLSYNQLTGAIPQ-SIGTLPELSNVILCHNKLSGSV--PPFLS--HALTRLDLKHNDLSGSLAPDS-LPPSVQYLSLS 223 (396)
Q Consensus 150 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~--p~~~~--~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~ 223 (396)
+|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+. ++|+.|++++|.+.+..+... ..++|++|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 999999999876665 4899999999999999998654 55554 899999999999988766532 24899999999
Q ss_pred cCCCCccchh-hhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcC-C----CCCCCCcCEEEccCCCC
Q 044898 224 WNRLSGPVDR-LLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPV-Q----PPDQVTIPTVDLSHNML 296 (396)
Q Consensus 224 ~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~-~----~~~~~~L~~L~ls~N~l 296 (396)
+|++++..+. .+..+++|++|++++|.+++..|..+... +|++|++++|.+++.. + ...+++|++|++++|.+
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 9999877654 48999999999999999998888888776 9999999999998732 2 23689999999999999
Q ss_pred cccCCcCC---cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCC
Q 044898 297 SGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQ 373 (396)
Q Consensus 297 ~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 373 (396)
++..|..+ ++|+.|++++|++++..|..+..+ ++| +|++++|+++++++..+..+++|+.+++++| ||.
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N----~~~ 560 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL---KGI-YLNLASNHISIILPSLLPILSQQRTINLRQN----PLD 560 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC---CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC----CEE
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCcc---ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC----Ccc
Confidence 98877654 579999999999999999999988 899 9999999999998888888999999999999 888
Q ss_pred CCCCCCCCCC
Q 044898 374 MQCPLRSGKQ 383 (396)
Q Consensus 374 c~c~~~~~~~ 383 (396)
|+|+..|+..
T Consensus 561 c~c~~~~~~~ 570 (606)
T 3t6q_A 561 CTCSNIYFLE 570 (606)
T ss_dssp CSGGGHHHHH
T ss_pred ccCCcHHHHH
Confidence 9999776543
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.3e-35 Score=290.82 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=66.1
Q ss_pred CcCEEEccCCCCcccCCcCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhccc
Q 044898 285 TIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQ 364 (396)
Q Consensus 285 ~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 364 (396)
+|++|++++|++++. +..+++|++|++++|+++ .+|. ...+ ++|++|+|++|+++++++..+..+++|+.++++
T Consensus 432 ~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~-~ip~-~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 432 TLEVLDVSNNNLDSF-SLFLPRLQELYISRNKLK-TLPD-ASLF---PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp TCSEEECCSSCCSCC-CCCCTTCCEEECCSSCCS-SCCC-GGGC---TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CceEEECCCCChhhh-cccCChhcEEECCCCccC-cCCC-cccC---ccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 455555555555543 235678899999999998 6775 3444 899999999999999988888999999999999
Q ss_pred CccCCCCCCCCCCC
Q 044898 365 YNCMVPPVQMQCPL 378 (396)
Q Consensus 365 ~N~l~~~~~c~c~~ 378 (396)
+| +|.|+|+.
T Consensus 506 ~N----~~~~~~~~ 515 (549)
T 2z81_A 506 TN----PWDCSCPR 515 (549)
T ss_dssp SS----CBCCCHHH
T ss_pred CC----CccCCCcc
Confidence 99 78899983
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-34 Score=291.58 Aligned_cols=303 Identities=20% Similarity=0.188 Sum_probs=222.7
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCC
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLR 149 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 149 (396)
.+++|||++ +.+++..+.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|+
T Consensus 53 ~~~~LdLs~-----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEeeC-----CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 689999994 677777777899999999999999999988888899999999999999999977777899999999
Q ss_pred EEEeecCcCCCCCCcccCCCcCCcEEEccCCccccc-CCchhh--ccCCEEEccCCcCcccCCCCC--------------
Q 044898 150 TLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGS-VPPFLS--HALTRLDLKHNDLSGSLAPDS-------------- 212 (396)
Q Consensus 150 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~--~~L~~L~l~~n~l~~~~~~~~-------------- 212 (396)
+|++++|++++..+..|+++++|++|++++|.+++. .|..+. ++|++|++++|.+.+..+...
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 999999999977777899999999999999998753 455554 678888888887654321100
Q ss_pred --------------------------------------------------------------------------------
Q 044898 213 -------------------------------------------------------------------------------- 212 (396)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (396)
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence
Q ss_pred --------------------------------------CCCCCcEEEcccCCCCccch-------------------hhh
Q 044898 213 --------------------------------------LPPSVQYLSLSWNRLSGPVD-------------------RLL 235 (396)
Q Consensus 213 --------------------------------------~~~~L~~L~L~~n~l~~~~~-------------------~~l 235 (396)
....++.|++.+|.+.+..+ ...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 00012222222221111000 001
Q ss_pred cCCCCCCEEeccCCc-----------------------------------------------------------------
Q 044898 236 SRLDQLNYLDLSLNQ----------------------------------------------------------------- 250 (396)
Q Consensus 236 ~~l~~L~~L~l~~n~----------------------------------------------------------------- 250 (396)
..+++|+.|+++.|.
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 123334444444433
Q ss_pred ---------CcccCCccccCc-ccCEEEccCCcccCc-CCC--CCCCCcCEEEccCCCCcccCCcCC---cccceEEeec
Q 044898 251 ---------FNGNIPGRIFTF-PITNLQLQRNAFAGP-VQP--PDQVTIPTVDLSHNMLSGQISPSF---STVQNLYLNN 314 (396)
Q Consensus 251 ---------l~~~~p~~~~~~-~L~~L~l~~n~l~~~-~~~--~~~~~L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~ 314 (396)
+.+..+..+... .++.|++++|.+... .|. ..+++|++|++++|++++..|..| ++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 332222222222 566777777764432 222 367899999999999998887655 5789999999
Q ss_pred ccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCC-CccchhcccCccCCCCCCCCCCCCCCCCC
Q 044898 315 NRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEI-PSSSSLCLQYNCMVPPVQMQCPLRSGKQK 384 (396)
Q Consensus 315 N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~c~c~~~~~~~~ 384 (396)
|+|++..|..|..+ ++|++|+|++|+|+++++..+..+ ++|+.|++++| ||.|+|.+.|+..|
T Consensus 528 N~l~~l~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N----p~~C~C~~~~~~~w 591 (635)
T 4g8a_A 528 NNFFSLDTFPYKCL---NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN----DFACTCEHQSFLQW 591 (635)
T ss_dssp SCCCBCCCGGGTTC---TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC----CBCCSGGGHHHHHH
T ss_pred CcCCCCChhHHhCC---CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC----CCcccCCcHHHHHH
Confidence 99998888889888 999999999999999999999887 58999999999 99999999886543
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-34 Score=286.74 Aligned_cols=312 Identities=16% Similarity=0.162 Sum_probs=230.2
Q ss_pred CCCCCCCCCCCCC----cceeEeCC------------------CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEc
Q 044898 48 FFASWDFTSDPCN----FAGVYCDA------------------DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSI 105 (396)
Q Consensus 48 ~~~~W~~~~~~C~----w~gv~c~~------------------~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l 105 (396)
.+++|..+.+||. |.++.|+. ..++.+++++ +.+....+..+.++++|++|++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~-----~~l~~lp~~~~~~l~~L~~L~L 82 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-----STMRKLPAALLDSFRQVELLNL 82 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESS-----CEESEECTHHHHHCCCCSEEEC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeC-----CCCCCcCHHHHccCCCCcEEEC
Confidence 4578876656663 66655541 2456677763 3444433445677888888888
Q ss_pred cCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCccccc
Q 044898 106 VPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGS 185 (396)
Q Consensus 106 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 185 (396)
++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 88888877777888888888888888888877777778888888888888888855555567888888888888888866
Q ss_pred CCchhh--ccCCEEEccCCcCcccCCCCCCCC-------------------CCcEEEcccCCCCccchhhhcCCCCCCEE
Q 044898 186 VPPFLS--HALTRLDLKHNDLSGSLAPDSLPP-------------------SVQYLSLSWNRLSGPVDRLLSRLDQLNYL 244 (396)
Q Consensus 186 ~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~-------------------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 244 (396)
.|..+. ++|+.|++++|.+.+... ...+ .|+.|++++|.++...+. ..++|+.|
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L 237 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP---VNVELTIL 237 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS---CCSCCCEE
T ss_pred ChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc---cCCCCCEE
Confidence 666665 678888888887775421 1223 455556666655533322 23578888
Q ss_pred eccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCC--CCCCcCEEEccCCCCcccCCc--CCcccceEEeecccccc
Q 044898 245 DLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLSGQISP--SFSTVQNLYLNNNRFTG 319 (396)
Q Consensus 245 ~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ls~N~l~~~~~~--~~~~L~~L~L~~N~l~~ 319 (396)
++++|.+++ +..+... +|++|++++|.+++..|.. .+++|+.|++++|.+++..+. .+++|+.|+|++|.++
T Consensus 238 ~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~- 314 (597)
T 3oja_B 238 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL- 314 (597)
T ss_dssp ECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-
T ss_pred ECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-
Confidence 999988875 3445554 8999999999999876543 789999999999999875332 3678999999999999
Q ss_pred cCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCCCCCCC
Q 044898 320 QVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCPLRSGK 382 (396)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~~~~~~ 382 (396)
.+|..+..+ ++|+.|+|++|.++.++ +..+++|+.|++++| +|.|+|...++.
T Consensus 315 ~i~~~~~~l---~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N----~~~~~~~~~~~~ 367 (597)
T 3oja_B 315 HVERNQPQF---DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHN----DWDCNSLRALFR 367 (597)
T ss_dssp CCGGGHHHH---TTCSEEECCSSCCCCCC---CCTTCCCSEEECCSS----CEEHHHHHHHTT
T ss_pred ccCcccccC---CCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCC----CCCChhHHHHHH
Confidence 788888888 99999999999999875 556889999999999 777888655544
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-33 Score=285.24 Aligned_cols=308 Identities=21% Similarity=0.222 Sum_probs=151.9
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCcc-----cccc----
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSG-----EIPA---- 140 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----~~p~---- 140 (396)
+++.|++++ +.+.+..|..|+.+++|++|++++|.+++..|..|.++++|++|++++|...+ .+|.
T Consensus 249 ~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 249 NLTMLDLSY-----NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp CCCEEECTT-----SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred CCCEEECCC-----CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 377777773 45666666677777777777777777776666666666666666665543332 1221
Q ss_pred ccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCccc----------------------------ccCCchhh-
Q 044898 141 ALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLS----------------------------GSVPPFLS- 191 (396)
Q Consensus 141 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~----------------------------~~~p~~~~- 191 (396)
.|..+++|++|++++|++++..+..|..+++|++|++++|.+. +..|..+.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 4555666666666666666555555666666666655555432 11222221
Q ss_pred -ccCCEEEccCCcCcccCCCCCC--CCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCc--ccCCccccCc-ccC
Q 044898 192 -HALTRLDLKHNDLSGSLAPDSL--PPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN--GNIPGRIFTF-PIT 265 (396)
Q Consensus 192 -~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~p~~~~~~-~L~ 265 (396)
++|+.|++++|.+.+.++...+ .++|++|++++|++++..+..|..+++|++|++++|.++ +.+|..+... +|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 2333333333333322221011 133333333333333222222222333333333333222 2233333333 455
Q ss_pred EEEccCCcccCcCCC--CCCCCcCEEEccCCCCcccCC-----------cCCcccceEEeecccccccCchhHHhcccCC
Q 044898 266 NLQLQRNAFAGPVQP--PDQVTIPTVDLSHNMLSGQIS-----------PSFSTVQNLYLNNNRFTGQVPGSFVDHLLDA 332 (396)
Q Consensus 266 ~L~l~~n~l~~~~~~--~~~~~L~~L~ls~N~l~~~~~-----------~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 332 (396)
+|++++|++++..+. ..+++|++|++++|.+++..+ ..+++|+.|++++|+++...+..|.++ +
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l---~ 560 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL---F 560 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC---T
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc---c
Confidence 555555555543332 244555555555555543211 122345555555555552222234444 5
Q ss_pred cccEEEccCCcCCCCCCCCCCCCCccchhcccCccCC---------------------CCCCCCCCC-CCCCCCC
Q 044898 333 SIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMV---------------------PPVQMQCPL-RSGKQKT 385 (396)
Q Consensus 333 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~---------------------~~~~c~c~~-~~~~~~~ 385 (396)
+|++|+|++|+++.+++..|..+++|+.|++++|.++ .||.|+|+. .|+..|.
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 5555555555555555544444455554444444332 289999996 7766543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-34 Score=292.27 Aligned_cols=285 Identities=19% Similarity=0.296 Sum_probs=187.7
Q ss_pred CCEEEEEcCCCCCCCCCCcee-----------------cCcccc--CCCCCCEEEccCCcCccccchhhcCCCCCcEEec
Q 044898 69 DKVIALNLGDPRAGSPGLTGR-----------------LDPAIG--KLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAI 129 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~-----------------l~~~~~--~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 129 (396)
.+++.|+|++ +.++|. +|..++ ++++|++|++++|.+.+.+|..|.++++|++|++
T Consensus 206 ~~L~~L~Ls~-----n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 206 TKLRQFYMGN-----SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp TTCCEEEEES-----CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred cCCCEEECcC-----CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 6889999994 567775 899988 9999999999999999999999999999999999
Q ss_pred cCCc-Ccc-ccccccCCC------CCCCEEEeecCcCCCCCCc--ccCCCcCCcEEEccCCcccccCCchhh--ccCCEE
Q 044898 130 SRNF-VSG-EIPAALGQL------RGLRTLDLSYNQLTGAIPQ--SIGTLPELSNVILCHNKLSGSVPPFLS--HALTRL 197 (396)
Q Consensus 130 ~~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L 197 (396)
++|. +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|++|++++|+++|.+| .+. ++|+.|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 9998 888 788877776 88888888888888 7777 88888888888888888887777 443 556666
Q ss_pred EccCCcCcccCCC-CCCCCC-CcEEEcccCCCCccchhhhcCCC--CCCEEeccCCcCcccCCcccc-------------
Q 044898 198 DLKHNDLSGSLAP-DSLPPS-VQYLSLSWNRLSGPVDRLLSRLD--QLNYLDLSLNQFNGNIPGRIF------------- 260 (396)
Q Consensus 198 ~l~~n~l~~~~~~-~~~~~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~p~~~~------------- 260 (396)
++++|.+. .+|. ....++ |++|++++|.++ .+|..+..++ +|++|++++|.+++.+|..+.
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 66666655 2222 111144 555555555555 3344443332 455555555555444444333
Q ss_pred -----------------C--cccCEEEccCCcccCcCCCCCC----------CCcCEEEccCCCCcccCCc-----CCcc
Q 044898 261 -----------------T--FPITNLQLQRNAFAGPVQPPDQ----------VTIPTVDLSHNMLSGQISP-----SFST 306 (396)
Q Consensus 261 -----------------~--~~L~~L~l~~n~l~~~~~~~~~----------~~L~~L~ls~N~l~~~~~~-----~~~~ 306 (396)
. .+|++|++++|.++ .+|...+ ++|++|++++|+++ .+|. .+++
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 514 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY 514 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence 2 14555555555555 2222211 15666666666666 3333 2345
Q ss_pred cceEEeecccccccCchhHHhcccCCcccEEEc------cCCcCCCCCCCCCCCCCccchhcccCccC
Q 044898 307 VQNLYLNNNRFTGQVPGSFVDHLLDASIQILYL------QHNFLTGIEINPTAEIPSSSSLCLQYNCM 368 (396)
Q Consensus 307 L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 368 (396)
|+.|++++|++++ +|..+..+ ++|++|+| ++|++.+..+..+..+++|+.|++++|.+
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l---~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNS---STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGC---SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCEEECCCCCCCC-cChhhhcC---CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 6666666666664 56666655 66666666 34555555455666667777777777766
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=268.91 Aligned_cols=294 Identities=15% Similarity=0.155 Sum_probs=217.5
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++.+++++ +.+....+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|
T Consensus 45 ~~l~~l~l~~-----~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKN-----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEES-----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecC-----CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3567788873 34433333346778888888888888877767778888888888888888887777777888888
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCC---------------
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPD--------------- 211 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~--------------- 211 (396)
++|++++|+++...+..|..+++|++|++++|++++..|..+. ++|+.|++++|.+.+.....
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence 8888888888754444567788888888888888765555554 67888888888776432110
Q ss_pred --CCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCC--CCCCCc
Q 044898 212 --SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQP--PDQVTI 286 (396)
Q Consensus 212 --~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~--~~~~~L 286 (396)
...++|+.|++++|.++.... ...++|++|++++|.+++. ..+... +|++|++++|.+++..+. ..+++|
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ccCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 111356666666666654422 2346889999999998743 344444 899999999999886554 378999
Q ss_pred CEEEccCCCCcccCC--cCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhccc
Q 044898 287 PTVDLSHNMLSGQIS--PSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQ 364 (396)
Q Consensus 287 ~~L~ls~N~l~~~~~--~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 364 (396)
++|++++|++++... ..+++|+.|++++|+++ .+|..+..+ ++|++|++++|+++.++ +..+++|+.|+++
T Consensus 275 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l---~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF---DRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 347 (390)
T ss_dssp CEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH---TTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred CEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccccc---CcCCEEECCCCccceeC---chhhccCCEEEcC
Confidence 999999999987433 24678999999999998 778788887 99999999999999875 5578899999999
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 044898 365 YNCMVPPVQMQCPLRSGKQ 383 (396)
Q Consensus 365 ~N~l~~~~~c~c~~~~~~~ 383 (396)
+| +|.|+|...+...
T Consensus 348 ~N----~~~~~~~~~~~~~ 362 (390)
T 3o6n_A 348 HN----DWDCNSLRALFRN 362 (390)
T ss_dssp SS----CEEHHHHHHHTTT
T ss_pred CC----CccchhHHHHHHH
Confidence 99 7778886666443
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.6e-34 Score=268.49 Aligned_cols=270 Identities=16% Similarity=0.220 Sum_probs=197.2
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCCCCCCCC----CCCCCCCCcceeEeCC----------CCEEEEEcCCCCCCCCCCce
Q 044898 23 AILDPVDFLALQAIRKSLDDLPGSNFFASW----DFTSDPCNFAGVYCDA----------DKVIALNLGDPRAGSPGLTG 88 (396)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~W----~~~~~~C~w~gv~c~~----------~~v~~L~L~~~~~~~~~l~~ 88 (396)
.....+|..||.+||..+..++ .++..+| ....++|.|.|+.|.. .+|+.|+|++ +.+.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~-~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~-----n~l~- 94 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADR-NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-----VPLP- 94 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCC-TTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----SCCS-
T ss_pred cccCchHHHHHHHHHHhccCCc-hhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----CCch-
Confidence 3344578999999999875433 3456788 4457899999999952 6888999984 4555
Q ss_pred ecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCC
Q 044898 89 RLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGT 168 (396)
Q Consensus 89 ~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 168 (396)
.+|+.++++++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 67888888899999999999888 77888888999999999999888 77888888999999999988888788876654
Q ss_pred ---------CcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCC
Q 044898 169 ---------LPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLD 239 (396)
Q Consensus 169 ---------l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 239 (396)
+++|++|++++|+++ .+|..+. ..++|++|++++|++++ +|..+..++
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~---------------------~l~~L~~L~L~~N~l~~-l~~~l~~l~ 229 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIA---------------------NLQNLKSLKIRNSPLSA-LGPAIHHLP 229 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCC-CCCGGGG---------------------GCTTCCEEEEESSCCCC-CCGGGGGCT
T ss_pred ccchhhhccCCCCCEEECcCCCcC-cchHhhc---------------------CCCCCCEEEccCCCCCc-CchhhccCC
Confidence 777777777777776 5555443 12456666666666664 334567777
Q ss_pred CCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeeccc
Q 044898 240 QLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNR 316 (396)
Q Consensus 240 ~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~ 316 (396)
+|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|.. +++|+.|++++|+
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~---------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGG---------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTC---------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCEEECcCCcchhhhHHHhcC---------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 7777777777777666665443 455566666666555555543 3467778888888
Q ss_pred ccccCchhHHhcccCCcccEEEccCCcCCCCC
Q 044898 317 FTGQVPGSFVDHLLDASIQILYLQHNFLTGIE 348 (396)
Q Consensus 317 l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~ 348 (396)
+.+.+|..+..+ ++|+.+++..+.+..+.
T Consensus 289 ~~~~iP~~l~~L---~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 289 NLSRLPSLIAQL---PANCIILVPPHLQAQLD 317 (328)
T ss_dssp TCCCCCGGGGGS---CTTCEEECCGGGSCC--
T ss_pred chhhccHHHhhc---cCceEEeCCHHHHHHHh
Confidence 888888888887 88888888887776653
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=291.96 Aligned_cols=101 Identities=21% Similarity=0.210 Sum_probs=63.5
Q ss_pred ceec-CccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccc--cCCCCCCCEEEeecCcCCCCCC
Q 044898 87 TGRL-DPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAA--LGQLRGLRTLDLSYNQLTGAIP 163 (396)
Q Consensus 87 ~~~l-~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p 163 (396)
.+.+ |.+|.++++|++|++++|.+.+..|..|.++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+
T Consensus 61 ~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence 3344 455666666666666666666666666666666777777766666544443 6666667777777666665433
Q ss_pred -cccCCCcCCcEEEccCCcccccCC
Q 044898 164 -QSIGTLPELSNVILCHNKLSGSVP 187 (396)
Q Consensus 164 -~~~~~l~~L~~L~l~~n~l~~~~p 187 (396)
..|.++++|++|++++|.+++..+
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 141 HPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred chhHhhCCCCCEEECCCCcCCeeCH
Confidence 456666666666666666654433
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-33 Score=280.10 Aligned_cols=292 Identities=17% Similarity=0.186 Sum_probs=166.1
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
..++.|++++ +.+++..|..|+++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|
T Consensus 33 ~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSF-----NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTT-----CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccC-----CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 3677788874 45566666667777777777777777766666667777777777777777766666666666666
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccc------------------------cCCchhh--ccCC--EEEcc
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSG------------------------SVPPFLS--HALT--RLDLK 200 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~------------------------~~p~~~~--~~L~--~L~l~ 200 (396)
++|++++|++++..+..+.++++|++|++++|++++ ..|..+. ++++ .|+++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 666666666665445556666666666666666553 2222222 3344 44555
Q ss_pred CCcCcccCCCCCCCC----------------------------------------------------CCcEEEcccCCCC
Q 044898 201 HNDLSGSLAPDSLPP----------------------------------------------------SVQYLSLSWNRLS 228 (396)
Q Consensus 201 ~n~l~~~~~~~~~~~----------------------------------------------------~L~~L~L~~n~l~ 228 (396)
+|.+.+..+...... +++.|++++|.++
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 554444333211000 3455555566666
Q ss_pred ccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCC--CC----------------------
Q 044898 229 GPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP--DQ---------------------- 283 (396)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~--~~---------------------- 283 (396)
+..+..|..+++|++|++++|+++ .+|..+... +|++|++++|.+++..+.. .+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 555555666667777777777666 566655554 6666666666665533221 34
Q ss_pred ---CCcCEEEccCCCCcccC--Cc---CCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCC-CCCCC
Q 044898 284 ---VTIPTVDLSHNMLSGQI--SP---SFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEI-NPTAE 354 (396)
Q Consensus 284 ---~~L~~L~ls~N~l~~~~--~~---~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~-~~~~~ 354 (396)
++|++|++++|.+++.. +. .+++|+.|++++|++++..|..|..+ ++|++|++++|++++..+ ..+..
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC---PQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC---TTCSEEECTTCCEECCTTCCTTTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC---ccCCeEECCCCcCCCcccchhhhC
Confidence 44455555555544332 21 23345555555555555555555554 555566666555554432 23555
Q ss_pred CCccchhcccCccCC
Q 044898 355 IPSSSSLCLQYNCMV 369 (396)
Q Consensus 355 l~~L~~L~l~~N~l~ 369 (396)
+++|+.|++++|.+.
T Consensus 424 l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLD 438 (606)
T ss_dssp CTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCccC
Confidence 556666666666554
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-34 Score=275.96 Aligned_cols=270 Identities=19% Similarity=0.254 Sum_probs=232.5
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCcccc-ccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEE
Q 044898 98 TSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEI-PAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 176 (396)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999988999999999999999999997555 56799999999999999999988899999999999999
Q ss_pred ccCCcccccCCch--hh--ccCCEEEccCCcCcccCCCC--CCCCCCcEEEcccCCCCccchhhhcCC------------
Q 044898 177 LCHNKLSGSVPPF--LS--HALTRLDLKHNDLSGSLAPD--SLPPSVQYLSLSWNRLSGPVDRLLSRL------------ 238 (396)
Q Consensus 177 l~~n~l~~~~p~~--~~--~~L~~L~l~~n~l~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~l------------ 238 (396)
+++|++++..+.. +. ++|++|++++|.+.+..+.. ...++|++|++++|++++..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755543 44 78999999999999887752 234899999999999998877766543
Q ss_pred ----------------------CCCCEEeccCCcCcccCCccccC-----------------------------------
Q 044898 239 ----------------------DQLNYLDLSLNQFNGNIPGRIFT----------------------------------- 261 (396)
Q Consensus 239 ----------------------~~L~~L~l~~n~l~~~~p~~~~~----------------------------------- 261 (396)
++|++|++++|++++..|..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 67888888888887655543321
Q ss_pred -----cccCEEEccCCcccCcCCCC--CCCCcCEEEccCCCCcccCCcCC---cccceEEeecccccccCchhHHhcccC
Q 044898 262 -----FPITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLD 331 (396)
Q Consensus 262 -----~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~ 331 (396)
.+|++|++++|.+++..+.. .+++|++|++++|.+++..|..+ ++|+.|++++|.+++..|..|..+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--- 346 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL--- 346 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC---
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc---
Confidence 26888888888888766543 78899999999999998877654 579999999999998888888888
Q ss_pred CcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCC
Q 044898 332 ASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 332 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
++|++|+|++|+++++.+..+..+++|++|++++|++++
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 999999999999999988899999999999999999884
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-33 Score=289.19 Aligned_cols=303 Identities=18% Similarity=0.188 Sum_probs=250.1
Q ss_pred CCcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCcccc-chhhcCCCCCcEEeccCCcCccc
Q 044898 59 CNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKL-PQSLSQLKNLRFFAISRNFVSGE 137 (396)
Q Consensus 59 C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~ 137 (396)
|.|..|-+...++++|||+ .+.+++..|..|.++++|++|++++|...+.+ |..|.++++|++|+|++|.+++.
T Consensus 14 ~~L~~vP~lp~~l~~LdLs-----~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 14 CNLTQVPQVLNTTERLLLS-----FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp CCSSCCCSSCTTCCEEEEE-----SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCCCCCCCCCcCEEECC-----CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 3566666544789999999 46788888899999999999999999776666 78899999999999999999988
Q ss_pred cccccCCCCCCCEEEeecCcCCCCCCcc--cCCCcCCcEEEccCCcccccCCc-hhh--ccCCEEEccCCcCcccCCCCC
Q 044898 138 IPAALGQLRGLRTLDLSYNQLTGAIPQS--IGTLPELSNVILCHNKLSGSVPP-FLS--HALTRLDLKHNDLSGSLAPDS 212 (396)
Q Consensus 138 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~-~~~--~~L~~L~l~~n~l~~~~~~~~ 212 (396)
.|..|.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+. .+. ++|+.|++++|.+.+..+. .
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~ 167 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-E 167 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-G
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-H
Confidence 9999999999999999999999866665 99999999999999999976553 454 8999999999999876654 2
Q ss_pred CC----CCCcEEEcccCCCCccchhhhcCCCC------CCEEeccCCcCcccCCccccC---------------------
Q 044898 213 LP----PSVQYLSLSWNRLSGPVDRLLSRLDQ------LNYLDLSLNQFNGNIPGRIFT--------------------- 261 (396)
Q Consensus 213 ~~----~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~p~~~~~--------------------- 261 (396)
+. ++|+.|++++|.+.+..|..+..+++ |++|++++|.+++.+|..+..
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 22 68999999999988877776666655 899999999877665544321
Q ss_pred ------------------cccCEEEccCCcccCcCCCC--CCCCcCEEEccCCCCcccCCcC---CcccceEEeeccccc
Q 044898 262 ------------------FPITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFT 318 (396)
Q Consensus 262 ------------------~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~ 318 (396)
.++++|++++|.+.+..+.. .+++|+.|++++|.+++..+.. +++|+.|++++|.++
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 25888888888887765443 6788999999999988776654 457888999999998
Q ss_pred ccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCC
Q 044898 319 GQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 319 ~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
+..|..|..+ ++|++|++++|+++.+++..|..+++|+.|++++|.+++
T Consensus 328 ~~~~~~~~~l---~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 328 ELYSSNFYGL---PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCCSCSCSSC---TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred ccCHHHhcCC---CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 7778888877 889999999999988888888888889999988887763
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=269.28 Aligned_cols=296 Identities=18% Similarity=0.144 Sum_probs=253.9
Q ss_pred eEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccC
Q 044898 64 VYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALG 143 (396)
Q Consensus 64 v~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 143 (396)
..|... -+.++.++ .+++ .+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.
T Consensus 7 C~C~~~-~~~v~c~~-----~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 7 CECSAQ-DRAVLCHR-----KRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp CEEETT-TTEEECCS-----CCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CeECCC-CCEEEeCC-----CCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh
Confidence 356532 23566663 3443 4565553 5899999999999998899999999999999999999988899999
Q ss_pred CCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCC-CCCCCcEE
Q 044898 144 QLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDS-LPPSVQYL 220 (396)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L 220 (396)
++++|++|++++|++++..+..|.++++|++|++++|++.+..|..+. ++|+.|++++|.+.+..+... ..++|+.|
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 999999999999999976667789999999999999999977777776 899999999999987766422 23899999
Q ss_pred EcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCC--CCCCcCEEEccCCCCc
Q 044898 221 SLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP--DQVTIPTVDLSHNMLS 297 (396)
Q Consensus 221 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~--~~~~L~~L~ls~N~l~ 297 (396)
++++|++++..+..+..+++|+.|++++|.+.+..+..+... +|++|++++|.+.+..+.. ...+|+.|++++|.++
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 999999999888899999999999999999997777677776 9999999999887766554 4458999999999998
Q ss_pred ccCC---cCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCC
Q 044898 298 GQIS---PSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPP 371 (396)
Q Consensus 298 ~~~~---~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 371 (396)
+..+ ..+++|+.|+|++|.+++..+..|..+ ++|++|+|++|+++++.+..|..+++|+.|++++|.+++.
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL---LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC---TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhcccc---ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence 6543 346789999999999998888888887 8999999999999999899999999999999999988743
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=274.40 Aligned_cols=301 Identities=20% Similarity=0.236 Sum_probs=197.2
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++.|++++ +.+.+..|..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..++++++|
T Consensus 52 ~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 52 PELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp SSCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CCceEEECCC-----CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 4566777763 45566556667777777777777777777666777777777777777777775554467777788
Q ss_pred CEEEeecCcCCC-CCCcccCCCcCCcEEEccCCcccccCCchhh--ccC----CEEEccCC-------------------
Q 044898 149 RTLDLSYNQLTG-AIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HAL----TRLDLKHN------------------- 202 (396)
Q Consensus 149 ~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L----~~L~l~~n------------------- 202 (396)
++|++++|.+++ .+|..+.++++|++|++++|++++..+..+. .+| +.+++++|
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 888888887775 3577777788888888877776643333222 222 22333322
Q ss_pred --------------------------------------------------------------------------------
Q 044898 203 -------------------------------------------------------------------------------- 202 (396)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (396)
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence
Q ss_pred ------cCcccCCCC------------------------------------------CCCCCCcEEEcccCCCCccc--h
Q 044898 203 ------DLSGSLAPD------------------------------------------SLPPSVQYLSLSWNRLSGPV--D 232 (396)
Q Consensus 203 ------~l~~~~~~~------------------------------------------~~~~~L~~L~L~~n~l~~~~--~ 232 (396)
.+.+..... ...++|++|++++|++++.. +
T Consensus 287 L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 366 (570)
T 2z63_A 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366 (570)
T ss_dssp EEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEE
T ss_pred EEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccc
Confidence 222110000 11245666666666665443 4
Q ss_pred hhhcCCCCCCEEeccCCcCcccCCccccCc-c-------------------------cCEEEccCCcccCcCCCC--CCC
Q 044898 233 RLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-P-------------------------ITNLQLQRNAFAGPVQPP--DQV 284 (396)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~-------------------------L~~L~l~~n~l~~~~~~~--~~~ 284 (396)
..+..+++|++|++++|.+++. |..+... + |++|++++|.+.+..+.. .++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 5556666666666666665532 2223332 4 445555555444433322 456
Q ss_pred CcCEEEccCCCCc-ccCCcC---CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccch
Q 044898 285 TIPTVDLSHNMLS-GQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSS 360 (396)
Q Consensus 285 ~L~~L~ls~N~l~-~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 360 (396)
+|++|++++|.++ +.+|.. +++|+.|++++|++++..|..|..+ ++|++|++++|+++++++..+..+++|+.
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL---SSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc---cCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 7777777777776 345543 4578888999999988888888887 89999999999999988888888999999
Q ss_pred hcccCccCCCCCCCCCCCCCCC
Q 044898 361 LCLQYNCMVPPVQMQCPLRSGK 382 (396)
Q Consensus 361 L~l~~N~l~~~~~c~c~~~~~~ 382 (396)
+++++| ++.|+|+..++.
T Consensus 523 L~l~~N----~~~~~~~~~~~~ 540 (570)
T 2z63_A 523 IWLHTN----PWDCSCPRIDYL 540 (570)
T ss_dssp EECCSS----CBCCCTTTTHHH
T ss_pred EEecCC----cccCCCcchHHH
Confidence 999999 777999976643
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4e-33 Score=265.63 Aligned_cols=304 Identities=20% Similarity=0.201 Sum_probs=206.6
Q ss_pred CCCCCCCCCCC-CcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEE
Q 044898 49 FASWDFTSDPC-NFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFF 127 (396)
Q Consensus 49 ~~~W~~~~~~C-~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 127 (396)
+++|..+.+|| .|.++.|....+. +.. ..........-..+.++++|++++|.++...+..|.++++|++|
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~---i~~-----~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVH---IDM-----QTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74 (390)
T ss_dssp ----CCEECBCC------EEEESCE---ECS-----SCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEE
T ss_pred cCCCCCccceehhhhhhccceeeee---eec-----ccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEE
Confidence 46787665666 3555555422222 221 11111122223356899999999999987666668999999999
Q ss_pred eccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchh-h--ccCCEEEccCCcC
Q 044898 128 AISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL-S--HALTRLDLKHNDL 204 (396)
Q Consensus 128 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~--~~L~~L~l~~n~l 204 (396)
++++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|... . ++|++|++++|.+
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCcc
Confidence 99999999888889999999999999999999888888999999999999999999 566543 3 8899999999999
Q ss_pred cccCCCC-CCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcc------------------cCCccccCcccC
Q 044898 205 SGSLAPD-SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNG------------------NIPGRIFTFPIT 265 (396)
Q Consensus 205 ~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------------------~~p~~~~~~~L~ 265 (396)
.+..+.. ...++|++|++++|++++.. +..+++|++|++++|.+++ .+|... ..+|+
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~ 229 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-NVELT 229 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC-CSSCC
T ss_pred CccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccc-ccccc
Confidence 9776652 23489999999999998763 4445666666666665553 111111 12566
Q ss_pred EEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcccCCcccEEEccCC
Q 044898 266 NLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHN 342 (396)
Q Consensus 266 ~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N 342 (396)
+|++++|.+++......+++|++|++++|.+++..|.. +++|+.|++++|++++ +|..+..+ ++|++|++++|
T Consensus 230 ~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l---~~L~~L~L~~n 305 (390)
T 3o6n_A 230 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI---PTLKVLDLSHN 305 (390)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC---TTCCEEECCSS
T ss_pred EEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC---CCCCEEECCCC
Confidence 66666666665543445667777777777776665543 3456777777777763 44444444 67777777777
Q ss_pred cCCCCCCCCCCCCCccchhcccCccCCC
Q 044898 343 FLTGIEINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 343 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
+++.++. .+..+++|+.|++++|.++.
T Consensus 306 ~l~~~~~-~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 306 HLLHVER-NQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CCCCCGG-GHHHHTTCSEEECCSSCCCC
T ss_pred cceecCc-cccccCcCCEEECCCCccce
Confidence 7776533 34456777777777777663
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.4e-32 Score=276.59 Aligned_cols=292 Identities=19% Similarity=0.156 Sum_probs=214.6
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|+|++ +.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|
T Consensus 25 ~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTH-----NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCS-----SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCC-----CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 4788999984 56666666678888999999999998888888888889999999999998886555578888999
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCC---CCCCCCcEEEcc
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPD---SLPPSVQYLSLS 223 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~---~~~~~L~~L~L~ 223 (396)
++|++++|++++..|..|.++++|++|++++|.+++..|..+. ++|++|++++|.+.+..+.. ...++|+.|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 9999999988877777888888999999999888877666664 78888888888887655431 122678888888
Q ss_pred cCCCCccchhhhcCC---------------------------CCCCEEeccCCcCcccCCccccCc---ccCEEEccCCc
Q 044898 224 WNRLSGPVDRLLSRL---------------------------DQLNYLDLSLNQFNGNIPGRIFTF---PITNLQLQRNA 273 (396)
Q Consensus 224 ~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~p~~~~~~---~L~~L~l~~n~ 273 (396)
+|.+++..|..+..+ ++|++|++++|.+++..|..+... +|++|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 888887777665543 456777777777777666666654 38888888888
Q ss_pred ccCcCCC--CCCCCcCEEEccCCCCcccCCcCC---cccceEEeecccccc-----cCch----hHHhcccCCcccEEEc
Q 044898 274 FAGPVQP--PDQVTIPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTG-----QVPG----SFVDHLLDASIQILYL 339 (396)
Q Consensus 274 l~~~~~~--~~~~~L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~-----~~~~----~~~~~~~~~~L~~L~L 339 (396)
+++..+. ..+++|++|++++|.+++..|..+ ++|+.|++++|...+ .+|. .|..+ ++|++|++
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l---~~L~~L~l 336 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNM 336 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC---TTCCEEEC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC---CCCCEEEC
Confidence 7765543 366778888888888777665443 456677776654432 1221 44444 67777777
Q ss_pred cCCcCCCCCCCCCCCCCccchhcccCccC
Q 044898 340 QHNFLTGIEINPTAEIPSSSSLCLQYNCM 368 (396)
Q Consensus 340 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 368 (396)
++|+++++.+..|..+++|++|++++|.+
T Consensus 337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp CSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred CCCccCCCChhHhccccCCcEEECCCCch
Confidence 77777777666676777777777766653
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-32 Score=283.44 Aligned_cols=284 Identities=20% Similarity=0.308 Sum_probs=186.1
Q ss_pred CCEEEEEcCCCCCCCCCCce-----------------ecCcccc--CCCCCCEEEccCCcCccccchhhcCCCCCcEEec
Q 044898 69 DKVIALNLGDPRAGSPGLTG-----------------RLDPAIG--KLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAI 129 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~-----------------~l~~~~~--~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 129 (396)
.+++.|+|++ +.++| .+|..++ ++++|++|++++|.+.+.+|..|.++++|++|++
T Consensus 448 ~~L~~L~Ls~-----N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 448 TKLQIIYFAN-----SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp TTCCEEEEES-----CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred CCCCEEECcC-----CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 5789999995 45666 4888877 8999999999999988888988999999999999
Q ss_pred cCCc-Ccc-ccccccCCCC-------CCCEEEeecCcCCCCCCc--ccCCCcCCcEEEccCCcccccCCchhh--ccCCE
Q 044898 130 SRNF-VSG-EIPAALGQLR-------GLRTLDLSYNQLTGAIPQ--SIGTLPELSNVILCHNKLSGSVPPFLS--HALTR 196 (396)
Q Consensus 130 ~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~ 196 (396)
++|+ +++ .+|..++.++ +|++|++++|+++ .+|. .+.++++|++|++++|+++ .+| .+. ++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence 9987 887 6776555444 8888888888887 7777 7888888888888888877 666 443 66777
Q ss_pred EEccCCcCcccCCC-CCCCCC-CcEEEcccCCCCccchhhhcCCCC--CCEEeccCCcCcccCC----------------
Q 044898 197 LDLKHNDLSGSLAP-DSLPPS-VQYLSLSWNRLSGPVDRLLSRLDQ--LNYLDLSLNQFNGNIP---------------- 256 (396)
Q Consensus 197 L~l~~n~l~~~~~~-~~~~~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~p---------------- 256 (396)
|++++|.+. .+|. ....++ |+.|++++|.++ .+|..+..++. |+.|++++|++++.+|
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 777777776 3443 122255 777777777766 44555544433 5566666665554433
Q ss_pred ------------cccc-C-cccCEEEccCCcccCcCCCCC----------CCCcCEEEccCCCCcccCCc-----CCccc
Q 044898 257 ------------GRIF-T-FPITNLQLQRNAFAGPVQPPD----------QVTIPTVDLSHNMLSGQISP-----SFSTV 307 (396)
Q Consensus 257 ------------~~~~-~-~~L~~L~l~~n~l~~~~~~~~----------~~~L~~L~ls~N~l~~~~~~-----~~~~L 307 (396)
..++ . .+|++|++++|.++. +|... +++|+.|++++|+++ .+|. .+++|
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 3322 1 145555555555552 22211 115666666666666 3333 23456
Q ss_pred ceEEeecccccccCchhHHhcccCCcccEEEccC------CcCCCCCCCCCCCCCccchhcccCccC
Q 044898 308 QNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQH------NFLTGIEINPTAEIPSSSSLCLQYNCM 368 (396)
Q Consensus 308 ~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~------N~l~~~~~~~~~~l~~L~~L~l~~N~l 368 (396)
+.|+|++|++++ +|..+..+ ++|+.|+|++ |++.+..+..+..+++|+.|++++|.+
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L---~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNS---SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGC---TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CEEEeCCCCCCc-cchhhhcC---CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 666666666664 56566555 6666666654 555555455666666777777777766
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=267.43 Aligned_cols=289 Identities=17% Similarity=0.195 Sum_probs=205.0
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|++++ +.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|
T Consensus 21 ~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQ-----NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCS-----SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCC
T ss_pred ccccEEECCC-----CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCc
Confidence 5899999994 5677666778999999999999999999888999999999999999999998 56665 89999
Q ss_pred CEEEeecCcCCC-CCCcccCCCcCCcEEEccCCcccccCCchhhccC--CEEEccCCcC--cccCCCCCC----------
Q 044898 149 RTLDLSYNQLTG-AIPQSIGTLPELSNVILCHNKLSGSVPPFLSHAL--TRLDLKHNDL--SGSLAPDSL---------- 213 (396)
Q Consensus 149 ~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L--~~L~l~~n~l--~~~~~~~~~---------- 213 (396)
++|++++|++++ .+|..++.+++|++|++++|++++. .....++| +.|++++|.+ .+..+....
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccchh-hccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999999999987 4688999999999999999998852 11112667 9999999988 443332100
Q ss_pred -----------------CCCCcEEEcccCC-------CCccchhhhcC---------------------------CCCCC
Q 044898 214 -----------------PPSVQYLSLSWNR-------LSGPVDRLLSR---------------------------LDQLN 242 (396)
Q Consensus 214 -----------------~~~L~~L~L~~n~-------l~~~~~~~l~~---------------------------l~~L~ 242 (396)
.++|+.+++++|. +.+.++ .++. .++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 1223333333322 111111 1111 12444
Q ss_pred EEeccCCcCcccCCccc-----cC---------------------------cccCEEEccCCcccCcCCCCCCCCcCEEE
Q 044898 243 YLDLSLNQFNGNIPGRI-----FT---------------------------FPITNLQLQRNAFAGPVQPPDQVTIPTVD 290 (396)
Q Consensus 243 ~L~l~~n~l~~~~p~~~-----~~---------------------------~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 290 (396)
+|++++|+++|.+|..+ .. .++++|++++|.+........+++|++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 45555555544444443 11 23666666666665543335678899999
Q ss_pred ccCCCCcccCCcC---CcccceEEeecccccc--cCchhHHhcccCCcccEEEccCCcCCC-CCCCCCCCCCccchhccc
Q 044898 291 LSHNMLSGQISPS---FSTVQNLYLNNNRFTG--QVPGSFVDHLLDASIQILYLQHNFLTG-IEINPTAEIPSSSSLCLQ 364 (396)
Q Consensus 291 ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~--~~~~~~~~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~ 364 (396)
+++|++++.+|.. +++|+.|++++|++++ .+|..+..+ ++|++|++++|++++ ++...+..+++|+.|+++
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l---~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM---KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC---TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC---CCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 9999998867654 4578889999998886 456677777 889999999999888 766667777888888888
Q ss_pred CccCCC
Q 044898 365 YNCMVP 370 (396)
Q Consensus 365 ~N~l~~ 370 (396)
+|.+++
T Consensus 408 ~N~l~~ 413 (520)
T 2z7x_B 408 SNILTD 413 (520)
T ss_dssp SSCCCG
T ss_pred CCCCCc
Confidence 887753
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=8.4e-31 Score=243.87 Aligned_cols=277 Identities=21% Similarity=0.267 Sum_probs=138.3
Q ss_pred CCcceeEeCC-----------CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEE
Q 044898 59 CNFAGVYCDA-----------DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFF 127 (396)
Q Consensus 59 C~w~gv~c~~-----------~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 127 (396)
|.|..+.|.. ..++.|++++ +.+++..+..|+++++|++|++++|.+++..|..|.++++|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQN-----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCC-----CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 4566666653 1344445442 23333333344455555555555555544444445555555555
Q ss_pred eccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccc--cCCchhh--ccCCEEEccCCc
Q 044898 128 AISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSG--SVPPFLS--HALTRLDLKHND 203 (396)
Q Consensus 128 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~--~~L~~L~l~~n~ 203 (396)
++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+. ++|+.|++++|.
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 55555544 2333322 445555555555544444444455555555555554431 2233332 445555555554
Q ss_pred CcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCC
Q 044898 204 LSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQ 283 (396)
Q Consensus 204 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~ 283 (396)
+... |. ...++|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+
T Consensus 183 l~~l-~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---------------------~l 239 (330)
T 1xku_A 183 ITTI-PQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA---------------------NT 239 (330)
T ss_dssp CCSC-CS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG---------------------GS
T ss_pred cccC-Cc-cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc---------------------CC
Confidence 4432 11 1124455555555554444444444455555555555544433333332 45
Q ss_pred CCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcc---cCCcccEEEccCCcCCC--CCCCCCCCC
Q 044898 284 VTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHL---LDASIQILYLQHNFLTG--IEINPTAEI 355 (396)
Q Consensus 284 ~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~---~~~~L~~L~L~~N~l~~--~~~~~~~~l 355 (396)
++|++|++++|.++ .+|.. +++|+.|++++|++++..+..|+... ..+.++.|++++|.+.. +++..|..+
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 56666666666665 33332 34566677777777655444443220 01568888888888764 455677778
Q ss_pred CccchhcccCcc
Q 044898 356 PSSSSLCLQYNC 367 (396)
Q Consensus 356 ~~L~~L~l~~N~ 367 (396)
++++.+++++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 888888888873
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=8.3e-31 Score=245.57 Aligned_cols=279 Identities=19% Similarity=0.286 Sum_probs=204.6
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|++++ +.+.+ +++ +.++++|++|++++|.+++. +.+.++++|++|++++|.+++. +. +..+++|
T Consensus 66 ~~L~~L~l~~-----n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L 134 (347)
T 4fmz_A 66 TNLEYLNLNG-----NQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKM 134 (347)
T ss_dssp TTCCEEECCS-----SCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTC
T ss_pred CCccEEEccC-----Ccccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCce
Confidence 4677788774 33333 333 77788888888888877753 3577888888888888887744 33 7778888
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLS 228 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 228 (396)
++|++++|...... ..+..+++|++|++++|.+.+..+-...++|+.|++++|.+.+..+ ....++|+.+++++|.++
T Consensus 135 ~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp CEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred eEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC
Confidence 88888888655333 3477888888888888887744332222778888888888775544 244478888888888887
Q ss_pred ccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccC-CcCCcc
Q 044898 229 GPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQI-SPSFST 306 (396)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~-~~~~~~ 306 (396)
+..+ +..+++|++|++++|++++ ++. +... +|++|++++|.+++......+++|++|++++|.+++.. ...+++
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~ 288 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ 288 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred CCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCC
Confidence 6654 7788888899998888874 443 4444 88899999988887655557888999999999887642 134567
Q ss_pred cceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCC
Q 044898 307 VQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 307 L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
|+.|++++|.+++..+..+..+ ++|++|++++|+++++.+ +..+++|+.+++++|.++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGL---TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTC---TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhcc---ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8899999999888888888887 889999999999888755 677888999999988664
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.98 E-value=4.6e-32 Score=254.81 Aligned_cols=280 Identities=18% Similarity=0.215 Sum_probs=203.6
Q ss_pred CCCCCCCCCcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccC
Q 044898 52 WDFTSDPCNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISR 131 (396)
Q Consensus 52 W~~~~~~C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 131 (396)
|......|.|.|+ |+ .++ ++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++
T Consensus 23 ~~~~~~~C~~~~~-c~--------~~~-----~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (353)
T 2z80_A 23 SNQASLSCDRNGI-CK--------GSS-----GSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85 (353)
T ss_dssp ----CCEECTTSE-EE--------CCS-----TTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCccCCCCCCCeE-ee--------CCC-----CCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCC
Confidence 3334577888886 54 332 3333 4565554 4899999999999987777899999999999999
Q ss_pred CcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCc--hhh--ccCCEEEccCCc-Ccc
Q 044898 132 NFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPP--FLS--HALTRLDLKHND-LSG 206 (396)
Q Consensus 132 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~--~~L~~L~l~~n~-l~~ 206 (396)
|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|+++ .+|. .+. ++|++|++++|. +.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccc
Confidence 9999888888999999999999999999665556999999999999999998 4554 333 677777777774 444
Q ss_pred cCCCC-CCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCC
Q 044898 207 SLAPD-SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVT 285 (396)
Q Consensus 207 ~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 285 (396)
..+.. ...++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+.. .+++
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~--------------------~~~~ 223 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD--------------------VTSS 223 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH--------------------HTTT
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhh--------------------hccc
Confidence 33321 12367777777777777776777777777777777777765 44443322 1334
Q ss_pred cCEEEccCCCCcccCCcC------CcccceEEeecccccc----cCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCC
Q 044898 286 IPTVDLSHNMLSGQISPS------FSTVQNLYLNNNRFTG----QVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEI 355 (396)
Q Consensus 286 L~~L~ls~N~l~~~~~~~------~~~L~~L~L~~N~l~~----~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 355 (396)
|+.|++++|.+++..+.. ...++.++++++.+++ .+|..+..+ ++|++|++++|+++.++...|..+
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l---~~L~~L~Ls~N~l~~i~~~~~~~l 300 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI---SGLLELEFSRNQLKSVPDGIFDRL 300 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC---TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc---cCCCEEECCCCCCCccCHHHHhcC
Confidence 444555555444433222 2346667777777665 467788887 899999999999999988778899
Q ss_pred CccchhcccCccCCCCCCCCCC
Q 044898 356 PSSSSLCLQYNCMVPPVQMQCP 377 (396)
Q Consensus 356 ~~L~~L~l~~N~l~~~~~c~c~ 377 (396)
++|++|++++| +|.|+|+
T Consensus 301 ~~L~~L~L~~N----~~~~~~~ 318 (353)
T 2z80_A 301 TSLQKIWLHTN----PWDCSCP 318 (353)
T ss_dssp TTCCEEECCSS----CBCCCHH
T ss_pred CCCCEEEeeCC----CccCcCC
Confidence 99999999999 7779997
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=2.7e-31 Score=264.87 Aligned_cols=285 Identities=19% Similarity=0.175 Sum_probs=219.3
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCC
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLR 149 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 149 (396)
..+.+++++ +++++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|+
T Consensus 32 ~~~~l~ls~-----~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 32 LESMVDYSN-----RNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp -CCEEECTT-----SCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCcEEEcCC-----CCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 347899994 55664 776554 7999999999999998889999999999999999999988899999999999
Q ss_pred EEEeecCcCCCCCCcccCCCcCCcEEEccCCcccc-cCCchhh--ccCCEEEccCCcCcccCCCCCCCCCC--cEEEccc
Q 044898 150 TLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSG-SVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSV--QYLSLSW 224 (396)
Q Consensus 150 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L--~~L~L~~ 224 (396)
+|++++|+++ .+|.. .+++|++|++++|++++ ..|..+. ++|++|++++|.+.+... ...++| +.|++++
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL--LPVAHLHLSCILLDL 178 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT--GGGTTSCEEEEEEEE
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch--hhhhhceeeEEEeec
Confidence 9999999999 56666 89999999999999995 3456666 899999999999875211 222556 9999999
Q ss_pred CCC--CccchhhhcCCC---------------------------------------------------------------
Q 044898 225 NRL--SGPVDRLLSRLD--------------------------------------------------------------- 239 (396)
Q Consensus 225 n~l--~~~~~~~l~~l~--------------------------------------------------------------- 239 (396)
|.+ ++..|..+..+.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 988 655555554432
Q ss_pred ------------------CCCEEeccCCcCcccCCccccC--------------------------------cccCEEEc
Q 044898 240 ------------------QLNYLDLSLNQFNGNIPGRIFT--------------------------------FPITNLQL 269 (396)
Q Consensus 240 ------------------~L~~L~l~~n~l~~~~p~~~~~--------------------------------~~L~~L~l 269 (396)
+|++|++++|.++|.+|..++. .++++|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 6777888888888777776521 23667777
Q ss_pred cCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeeccccccc--CchhHHhcccCCcccEEEccCCcC
Q 044898 270 QRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQ--VPGSFVDHLLDASIQILYLQHNFL 344 (396)
Q Consensus 270 ~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~--~~~~~~~~~~~~~L~~L~L~~N~l 344 (396)
++|.+........+++|++|++++|.+++.+|.. +++|+.|++++|++++. +|..+..+ ++|++|++++|++
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l---~~L~~L~l~~N~l 415 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM---SSLETLDVSLNSL 415 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC---TTCCEEECTTSCC
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC---CCCCEEECCCCcC
Confidence 7776655443356778888888888888766654 45678888888888852 34556666 7888888888888
Q ss_pred CC-CCCCCCCCCCccchhcccCccCCC
Q 044898 345 TG-IEINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 345 ~~-~~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
++ ++...+..+++|+.|++++|.+++
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CCccChhhhcCcccCCEEECCCCCCCc
Confidence 87 666667777777777777777653
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.3e-31 Score=244.14 Aligned_cols=270 Identities=18% Similarity=0.192 Sum_probs=181.0
Q ss_pred ecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCC
Q 044898 89 RLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGT 168 (396)
Q Consensus 89 ~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 168 (396)
.+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..+.
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~- 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP- 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-
T ss_pred ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-
Confidence 3444442 46777777777777666667777777777777777777666777777777777777777776 4454443
Q ss_pred CcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcc--cCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEE
Q 044898 169 LPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSG--SLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYL 244 (396)
Q Consensus 169 l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 244 (396)
++|++|++++|++++..+..+. ++|+.|++++|.+.. ..+......+|+.|++++|++++. |..+. ++|++|
T Consensus 123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l-~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI-PKDLP--ETLNEL 198 (332)
T ss_dssp -TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC-CSSSC--SSCSCC
T ss_pred -ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc-Ccccc--CCCCEE
Confidence 6777777777777744333343 677777777777753 223211113677777777777753 33332 577777
Q ss_pred eccCCcCcccCCccccCc-ccCEEEccCCcccCcCCC--CCCCCcCEEEccCCCCcccCCcC---CcccceEEeeccccc
Q 044898 245 DLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQP--PDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFT 318 (396)
Q Consensus 245 ~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~--~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~ 318 (396)
++++|.+++..+..+... +|++|++++|.+++..+. ..+++|++|++++|+++ .+|.. +++|+.|++++|+++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 777777776555566554 777777777777765542 26778888888888887 45543 356888888888888
Q ss_pred ccCchhHHhcc---cCCcccEEEccCCcCC--CCCCCCCCCCCccchhcccCcc
Q 044898 319 GQVPGSFVDHL---LDASIQILYLQHNFLT--GIEINPTAEIPSSSSLCLQYNC 367 (396)
Q Consensus 319 ~~~~~~~~~~~---~~~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 367 (396)
+..+..|.... ..++|+.|++++|.+. ++.+..|..+++|+.+++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66666665431 0257899999999987 5667778889999999998883
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-31 Score=268.42 Aligned_cols=267 Identities=22% Similarity=0.257 Sum_probs=204.5
Q ss_pred CCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEE
Q 044898 96 KLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175 (396)
Q Consensus 96 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 175 (396)
.+.+++.+++++|.+....+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999988777778999999999999999998888899999999999999999998888889999999999
Q ss_pred EccCCcccccCCchhh--ccCCEEEccCCcCcccCCCC-CCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCc
Q 044898 176 ILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPD-SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 176 ~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (396)
++++|.+++..+..+. ++|++|++++|.+.+..+.. ...++|+.|++++|.+++.. +..+++|++|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 9999999944444344 89999999999999877752 33489999999999998764 344566666666666655
Q ss_pred cc------------------CCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCC---cccceEE
Q 044898 253 GN------------------IPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSF---STVQNLY 311 (396)
Q Consensus 253 ~~------------------~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~---~~L~~L~ 311 (396)
+. +|..+ ..+|+.|++++|.+++......+++|+.|++++|.+++..|..+ ++|+.|+
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 31 11111 12577777777777765444467778888888888777666543 4677788
Q ss_pred eecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCC
Q 044898 312 LNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPP 371 (396)
Q Consensus 312 L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 371 (396)
|++|.+++ +|..+..+ ++|++|+|++|.++.++. .+..+++|+.|++++|.+.+.
T Consensus 285 Ls~N~l~~-l~~~~~~l---~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 285 ISNNRLVA-LNLYGQPI---PTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CTTSCCCE-EECSSSCC---TTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCC
T ss_pred CCCCCCCC-CCcccccC---CCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCc
Confidence 88887774 45555444 778888888888876633 345677888888888877643
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.6e-31 Score=262.37 Aligned_cols=293 Identities=17% Similarity=0.160 Sum_probs=202.4
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++.|+++ .+.+.+..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|
T Consensus 28 ~~l~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECC-----SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEcc-----CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 479999999 467788778899999999999999999998888899999999999999999998888999999999
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccc-cCCchhh--ccCCEEEccCCcCcccCCCCCCC--CCC----cE
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSG-SVPPFLS--HALTRLDLKHNDLSGSLAPDSLP--PSV----QY 219 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~--~~L----~~ 219 (396)
++|++++|++++..+..+.++++|++|++++|.+++ .+|..+. ++|+.|++++|.+.+..+. .+. ++| +.
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLS 181 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG-GGHHHHTCTTCCCE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH-Hccchhccchhhhh
Confidence 999999999997666679999999999999999986 4688876 8999999999998865432 111 233 44
Q ss_pred EEcccCCCCcc---------------------------------------------------------------------
Q 044898 220 LSLSWNRLSGP--------------------------------------------------------------------- 230 (396)
Q Consensus 220 L~L~~n~l~~~--------------------------------------------------------------------- 230 (396)
+++++|.+++.
T Consensus 182 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 55555544332
Q ss_pred ------------chhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcc
Q 044898 231 ------------VDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSG 298 (396)
Q Consensus 231 ------------~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~ 298 (396)
.+..+..+++|++|++++|.++ .+|..+...+|++|++++|.+.. .|...+++|+.|++++|.+.+
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~-l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSS-CCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccc-cCcccccccCEEeCcCCcccc
Confidence 2344555677777777777776 56666555566677776666652 333344455555555554444
Q ss_pred cCC-cCCcccceEEeecccccccC--chhHHhc--------------------ccCCcccEEEccCCcCCCCCC-CCCCC
Q 044898 299 QIS-PSFSTVQNLYLNNNRFTGQV--PGSFVDH--------------------LLDASIQILYLQHNFLTGIEI-NPTAE 354 (396)
Q Consensus 299 ~~~-~~~~~L~~L~L~~N~l~~~~--~~~~~~~--------------------~~~~~L~~L~L~~N~l~~~~~-~~~~~ 354 (396)
..+ ..+++|+.|++++|.+++.. |..+..+ ...++|++|++++|++++..+ ..+..
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 333 23344444454444444322 3333333 000555555555555555432 34555
Q ss_pred CCccchhcccCccCC
Q 044898 355 IPSSSSLCLQYNCMV 369 (396)
Q Consensus 355 l~~L~~L~l~~N~l~ 369 (396)
+++|++|++++|.+.
T Consensus 420 l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 420 LRNLIYLDISHTHTR 434 (570)
T ss_dssp CTTCCEEECTTSCCE
T ss_pred CCCCCEEeCcCCccc
Confidence 666666666666554
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.2e-30 Score=253.29 Aligned_cols=240 Identities=21% Similarity=0.253 Sum_probs=189.3
Q ss_pred cCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCC
Q 044898 90 LDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTL 169 (396)
Q Consensus 90 l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 169 (396)
+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..|..+
T Consensus 69 iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 69 VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 444443 589999999999999889999999999999999999998888899999999999999999997777779999
Q ss_pred cCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEccc-CCCCccchhhhcCCCCCCEEeccC
Q 044898 170 PELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSW-NRLSGPVDRLLSRLDQLNYLDLSL 248 (396)
Q Consensus 170 ~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~ 248 (396)
++|++|++++|+++...+..+. ..++|+.|++++ +.+....+..|..+++|++|++++
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~---------------------~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFN---------------------RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTT---------------------TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCCEEECCCCCcceeCHhHHh---------------------cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 9999999999998833322222 124555555555 333434444677788888888888
Q ss_pred CcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhH
Q 044898 249 NQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSF 325 (396)
Q Consensus 249 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~ 325 (396)
|+++ .+|. + ..+++|+.|++++|.+++..|.. +++|+.|++++|++++..+..|
T Consensus 206 n~l~-~~~~-~---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 206 CNIK-DMPN-L---------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp SCCS-SCCC-C---------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred Cccc-cccc-c---------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence 8876 3332 1 13556777777777776665543 3568888888898888888888
Q ss_pred HhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCCCCCCC
Q 044898 326 VDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCPLRSGK 382 (396)
Q Consensus 326 ~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~~~~~~ 382 (396)
..+ ++|++|+|++|+|++++...+..+++|+.|++++| ||.|+|.+.|..
T Consensus 263 ~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N----p~~CdC~~~~l~ 312 (452)
T 3zyi_A 263 DGL---ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN----PWNCDCDILWLA 312 (452)
T ss_dssp TTC---TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS----CEECSTTTHHHH
T ss_pred cCC---CCCCEEECCCCcCCccChHHhccccCCCEEEccCC----CcCCCCCchHHH
Confidence 887 89999999999999999888999999999999999 899999988753
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2e-30 Score=241.27 Aligned_cols=261 Identities=23% Similarity=0.312 Sum_probs=177.7
Q ss_pred EEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCE
Q 044898 71 VIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRT 150 (396)
Q Consensus 71 v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 150 (396)
++.+++++ .++. .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++
T Consensus 33 l~~l~~~~-----~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 33 LRVVQCSD-----LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp TTEEECTT-----SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CeEEEecC-----CCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 55666663 2332 3444332 46677777777776665556667777777777777776665666666677777
Q ss_pred EEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCc-
Q 044898 151 LDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSG- 229 (396)
Q Consensus 151 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~- 229 (396)
|++++|+++ .+|..+. ++|++|++++|++++..+..+. ..++|+.|++++|.++.
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~---------------------~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFN---------------------GLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHT---------------------TCTTCCEEECCSSCCCGG
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhc---------------------CCccccEEECCCCcCCcc
Confidence 777776666 3444333 5666666666666533332222 12455555555555532
Q ss_pred -cchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCC--CCCCCcCEEEccCCCCcccCCcC---
Q 044898 230 -PVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQP--PDQVTIPTVDLSHNMLSGQISPS--- 303 (396)
Q Consensus 230 -~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~L~~L~ls~N~l~~~~~~~--- 303 (396)
..+..+..+++|++|++++|.++ .+|..+. .+|++|++++|.+++..+. ..+++|++|++++|.+++..+..
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNIT-TIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred CcChhhccCCCCcCEEECCCCccc-cCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 44556677777777777777776 4555443 4677777777777665432 36789999999999998876644
Q ss_pred CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCC------CCccchhcccCccCC
Q 044898 304 FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAE------IPSSSSLCLQYNCMV 369 (396)
Q Consensus 304 ~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~ 369 (396)
+++|+.|++++|+++ .+|..+..+ ++|++|++++|+|++++...|.. .+.++.+++++|++.
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l---~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADH---KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTC---SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCCCEEECCCCcCc-cCChhhccC---CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 467999999999999 888888877 99999999999999998877754 377889999999763
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.7e-30 Score=242.02 Aligned_cols=261 Identities=21% Similarity=0.284 Sum_probs=226.1
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEc
Q 044898 98 TSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVIL 177 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 177 (396)
.+++.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 46899999999987 4666553 78999999999999888889999999999999999999888999999999999999
Q ss_pred cCCcccccCCchhhccCCEEEccCCcCcccCCC-CCCCCCCcEEEcccCCCC--ccchhhhcCCCCCCEEeccCCcCccc
Q 044898 178 CHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAP-DSLPPSVQYLSLSWNRLS--GPVDRLLSRLDQLNYLDLSLNQFNGN 254 (396)
Q Consensus 178 ~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~ 254 (396)
++|+++ .+|..+.++|++|++++|.+.+..+. ....++|+.|++++|.++ +..+..+..+ +|++|++++|+++ .
T Consensus 110 ~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~ 186 (332)
T 2ft3_A 110 SKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-G 186 (332)
T ss_dssp CSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-S
T ss_pred CCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-c
Confidence 999999 77777779999999999999866554 233489999999999996 3677788888 9999999999998 5
Q ss_pred CCccccCcccCEEEccCCcccCcCCC--CCCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcc
Q 044898 255 IPGRIFTFPITNLQLQRNAFAGPVQP--PDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHL 329 (396)
Q Consensus 255 ~p~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~ 329 (396)
+|..+. .+|++|++++|.+++..+. ..+++|++|++++|.+++..+.. +++|+.|++++|+++ .+|..+..+
T Consensus 187 l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l- 263 (332)
T 2ft3_A 187 IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL- 263 (332)
T ss_dssp CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC-
T ss_pred cCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC-
Confidence 776654 5899999999999987653 37889999999999999877644 468999999999999 888888887
Q ss_pred cCCcccEEEccCCcCCCCCCCCCCC------CCccchhcccCccCC
Q 044898 330 LDASIQILYLQHNFLTGIEINPTAE------IPSSSSLCLQYNCMV 369 (396)
Q Consensus 330 ~~~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~ 369 (396)
++|++|++++|+|++++...|.. .+.++.+++++|++.
T Consensus 264 --~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 264 --KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp --TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred --ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999999998877765 367899999999654
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.8e-31 Score=260.39 Aligned_cols=301 Identities=16% Similarity=0.199 Sum_probs=224.9
Q ss_pred CCCcceeEeCC-------------CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCC
Q 044898 58 PCNFAGVYCDA-------------DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNL 124 (396)
Q Consensus 58 ~C~w~gv~c~~-------------~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 124 (396)
.|.|.|+ |+. .++++|++++ +.+++..|..|.++++|++|++++|.+++..|..|.++++|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF-----NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS-----SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC-----CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccC
Confidence 4788887 753 3799999994 67888888899999999999999999999888999999999
Q ss_pred cEEeccCCcCccccccccCCCCCCCEEEeecCcCCC-CCCcccCCCcCCcEEEccCCcccccCCc-hhh--ccCCEEEcc
Q 044898 125 RFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTG-AIPQSIGTLPELSNVILCHNKLSGSVPP-FLS--HALTRLDLK 200 (396)
Q Consensus 125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~--~~L~~L~l~ 200 (396)
++|++++|.+++..|..|+++++|++|++++|++++ ..|..+.++++|++|++++|++.+.+|. .+. ++|++|+++
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 999999999998888889999999999999999986 3577899999999999999996556664 454 789999999
Q ss_pred CCcCcccCCCCCC-CCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccC--CccccC--cc------------
Q 044898 201 HNDLSGSLAPDSL-PPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNI--PGRIFT--FP------------ 263 (396)
Q Consensus 201 ~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--p~~~~~--~~------------ 263 (396)
+|.+.+..+.... .++|+.|+++.|.+....+..+..+++|++|++++|++++.. |..+.. .+
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 9999987765222 388999999999987555555678999999999999998631 111100 02
Q ss_pred ---------------------------------------------------------------------------cCEEE
Q 044898 264 ---------------------------------------------------------------------------ITNLQ 268 (396)
Q Consensus 264 ---------------------------------------------------------------------------L~~L~ 268 (396)
+++|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 22222
Q ss_pred ccCCcccCcCCC---CCCCCcCEEEccCCCCcccCC------cCCcccceEEeecccccccCc--hhHHhcccCCcccEE
Q 044898 269 LQRNAFAGPVQP---PDQVTIPTVDLSHNMLSGQIS------PSFSTVQNLYLNNNRFTGQVP--GSFVDHLLDASIQIL 337 (396)
Q Consensus 269 l~~n~l~~~~~~---~~~~~L~~L~ls~N~l~~~~~------~~~~~L~~L~L~~N~l~~~~~--~~~~~~~~~~~L~~L 337 (396)
+++|.++. +|. ..+++|++|++++|.+++.+| ..+++|+.|++++|++++..+ ..+..+ ++|++|
T Consensus 317 l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l---~~L~~L 392 (549)
T 2z81_A 317 VENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL---KNLTSL 392 (549)
T ss_dssp EESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC---TTCCEE
T ss_pred eccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC---CCCCEE
Confidence 33332221 111 135677777777777776442 245677778888887774322 345555 778888
Q ss_pred EccCCcCCCCCCCCCCCCCccchhcccCccCC
Q 044898 338 YLQHNFLTGIEINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 338 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
++++|+++.++ ..+..+++|++|++++|.++
T Consensus 393 ~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 393 DISRNTFHPMP-DSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp ECTTCCCCCCC-SCCCCCTTCCEEECTTSCCS
T ss_pred ECCCCCCccCC-hhhcccccccEEECCCCCcc
Confidence 88888887763 34556677777777777665
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=7.3e-30 Score=248.73 Aligned_cols=279 Identities=23% Similarity=0.322 Sum_probs=152.7
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|++++ +.+.+. ++ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +..+++|
T Consensus 68 ~~L~~L~Ls~-----n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 136 (466)
T 1o6v_A 68 NNLTQINFSN-----NQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNL 136 (466)
T ss_dssp TTCCEEECCS-----SCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred cCCCEEECCC-----CccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCC
Confidence 5788888885 344433 22 7777777777777777776544 7777777777777777764422 6677777
Q ss_pred CEEEeecCcCCCCCC-------------------cccCCCcCCcEEEccCCcccccCCchhh-ccCCEEEccCCcCcccC
Q 044898 149 RTLDLSYNQLTGAIP-------------------QSIGTLPELSNVILCHNKLSGSVPPFLS-HALTRLDLKHNDLSGSL 208 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p-------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~L~~L~l~~n~l~~~~ 208 (396)
++|++++|.+++... ..+..+++|++|++++|.+++. +.... ++|++|++++|.+.+..
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc
Confidence 777777776653210 1244555666666666665532 22111 55666666666555443
Q ss_pred CCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCC---------------------ccccCc-ccCE
Q 044898 209 APDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIP---------------------GRIFTF-PITN 266 (396)
Q Consensus 209 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p---------------------~~~~~~-~L~~ 266 (396)
+. ...++|+.|++++|++++. ..+..+++|++|++++|.+++..| . +... +|++
T Consensus 216 ~~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 216 PL-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTN 291 (466)
T ss_dssp GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred cc-cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence 31 2234455555555544432 234444444444444444442222 1 2222 4555
Q ss_pred EEccCCcccCcCCCCCCCCcCEEEccCCCCcccCC-cCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCC
Q 044898 267 LQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQIS-PSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLT 345 (396)
Q Consensus 267 L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~-~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~ 345 (396)
|++++|.+++..+...+++|+.|++++|.+++..| ..+++|+.|++++|++++. ..+..+ ++|++|++++|+++
T Consensus 292 L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l---~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 292 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANL---TNINWLSAGHNQIS 366 (466)
T ss_dssp EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTC---TTCCEEECCSSCCC
T ss_pred EEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccC---CCCCEEeCCCCccC
Confidence 55555555444443445555555555555554433 2334555666666655533 234444 56666666666666
Q ss_pred CCCCCCCCCCCccchhcccCccCCC
Q 044898 346 GIEINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 346 ~~~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
+..+ +..+++|+.|++++|++++
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccch--hhcCCCCCEEeccCCcccC
Confidence 5543 5566666667777766654
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=7.3e-30 Score=239.11 Aligned_cols=280 Identities=18% Similarity=0.288 Sum_probs=234.2
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|+++++ .+. .++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ + +.+..+++|
T Consensus 44 ~~L~~L~l~~~-----~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 44 ESITKLVVAGE-----KVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp TTCSEEECCSS-----CCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred ccccEEEEeCC-----ccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 57999999953 333 233 48899999999999999987544 9999999999999999985 3 369999999
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh-ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS-HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRL 227 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l 227 (396)
++|++++|.+++. +. +..+++|++|++++|......+.... ++|++|++++|.+.+..+ ....++|+.|++++|.+
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence 9999999999854 33 89999999999999976655554222 899999999999986655 24558999999999999
Q ss_pred CccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccC-CcCCc
Q 044898 228 SGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQI-SPSFS 305 (396)
Q Consensus 228 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~-~~~~~ 305 (396)
++..+ +..+++|++|++++|.+++..+ +... +|++|++++|.+++..+...+++|++|++++|.+++.. ...++
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~ 265 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLT 265 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCT
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCC
Confidence 87654 8899999999999999985443 4444 89999999999998777778999999999999998742 23567
Q ss_pred ccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCC
Q 044898 306 TVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPP 371 (396)
Q Consensus 306 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 371 (396)
+|+.|++++|++++. + .+..+ ++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 266 ~L~~L~l~~n~l~~~-~-~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI-S-VLNNL---SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp TCCEEECCSSCCCCC-G-GGGGC---TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CcCEEEccCCccCCC-h-hhcCC---CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 899999999999854 3 56666 8999999999999998878888899999999999988754
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7.1e-30 Score=256.86 Aligned_cols=135 Identities=18% Similarity=0.211 Sum_probs=122.5
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|+++ .+.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|
T Consensus 32 ~~l~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLS-----FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECC-----CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 478999999 467888888899999999999999999999889999999999999999999998889999999999
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccc-cCCchhh--ccCCEEEccCCcCcccC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSG-SVPPFLS--HALTRLDLKHNDLSGSL 208 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~--~~L~~L~l~~n~l~~~~ 208 (396)
++|++++|++++..+..+.++++|++|++++|.+.+ .+|..+. ++|++|++++|.+.+..
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 999999999998777899999999999999999986 5688776 78999999888776543
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=5.8e-30 Score=247.59 Aligned_cols=241 Identities=24% Similarity=0.277 Sum_probs=195.8
Q ss_pred ecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCC
Q 044898 89 RLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGT 168 (396)
Q Consensus 89 ~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 168 (396)
.+|..+. ++++.|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|+++...+..|..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 4555444 68999999999999888889999999999999999999888888999999999999999999766678888
Q ss_pred CcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccC-CCCccchhhhcCCCCCCEEecc
Q 044898 169 LPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWN-RLSGPVDRLLSRLDQLNYLDLS 247 (396)
Q Consensus 169 l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~ 247 (396)
+++|++|++++|+++...+..+ ...++|+.|++++| .+....+..|..+++|++|+++
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~---------------------~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAF---------------------NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTT---------------------TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred cccCceeeCCCCcccccCHHHh---------------------hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 9999999999888873222111 22367777888774 4555555578888999999999
Q ss_pred CCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCC---cccceEEeecccccccCchh
Q 044898 248 LNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGS 324 (396)
Q Consensus 248 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~ 324 (396)
+|+++ .+|. + ..+++|+.|++++|.+++..|..+ ++|+.|++++|++++..+..
T Consensus 194 ~n~l~-~~~~-~---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 194 MCNLR-EIPN-L---------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp TSCCS-SCCC-C---------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS
T ss_pred CCcCc-cccc-c---------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh
Confidence 98887 4442 1 245678888888888877666544 57889999999999888888
Q ss_pred HHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCCCCCCC
Q 044898 325 FVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCPLRSGK 382 (396)
Q Consensus 325 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~~~~~~ 382 (396)
|..+ ++|++|+|++|+|+.++...|..+++|+.|++++| ||.|+|.+.|..
T Consensus 251 ~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N----p~~CdC~l~~l~ 301 (440)
T 3zyj_A 251 FDNL---QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN----PWNCNCDILWLS 301 (440)
T ss_dssp STTC---TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS----CEECSSTTHHHH
T ss_pred hcCC---CCCCEEECCCCCCCccChhHhccccCCCEEEcCCC----CccCCCCchHHH
Confidence 8887 99999999999999999999999999999999999 899999998854
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1e-29 Score=247.63 Aligned_cols=261 Identities=24% Similarity=0.312 Sum_probs=183.1
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccc---------
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIP--------- 139 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--------- 139 (396)
.++++|++++ +.+.+..+ ++++++|++|++++|.+++..+ +.++++|++|++++|.+++...
T Consensus 90 ~~L~~L~l~~-----n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 90 TKLVDILMNN-----NQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQ 160 (466)
T ss_dssp TTCCEEECCS-----SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSE
T ss_pred ccCCEEECCC-----CccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccE
Confidence 5788888884 34443332 7777777777777777775432 6667777777777666553210
Q ss_pred ----------cccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCc--------------------h
Q 044898 140 ----------AALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPP--------------------F 189 (396)
Q Consensus 140 ----------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--------------------~ 189 (396)
..+.++++|++|++++|.+++. ..+..+++|++|++++|.+.+..|. .
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~ 238 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT 238 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh
Confidence 1244555666666666665532 2345555555555555555433221 1
Q ss_pred hh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCE
Q 044898 190 LS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITN 266 (396)
Q Consensus 190 ~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~ 266 (396)
+. ++|+.|++++|.+.+..+ ....++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +... +|++
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred hhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 21 566666677666665544 2444788888888888887654 7889999999999999985443 4444 9999
Q ss_pred EEccCCcccCcCCCCCCCCcCEEEccCCCCcccCC-cCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCC
Q 044898 267 LQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQIS-PSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLT 345 (396)
Q Consensus 267 L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~-~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~ 345 (396)
|++++|++++..+...+++|+.|++++|.+++... ..+++|+.|++++|++++..| +..+ ++|++|++++|.++
T Consensus 314 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l---~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 314 LTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANL---TRITQLGLNDQAWT 388 (466)
T ss_dssp EECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTC---TTCCEEECCCEEEE
T ss_pred EECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcC---CCCCEEeccCCccc
Confidence 99999999998887789999999999999987521 245789999999999997777 6666 89999999999999
Q ss_pred CCCCC
Q 044898 346 GIEIN 350 (396)
Q Consensus 346 ~~~~~ 350 (396)
+.+..
T Consensus 389 ~~p~~ 393 (466)
T 1o6v_A 389 NAPVN 393 (466)
T ss_dssp CCCBC
T ss_pred CCchh
Confidence 87543
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-30 Score=240.35 Aligned_cols=256 Identities=19% Similarity=0.234 Sum_probs=181.0
Q ss_pred CCcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccc-
Q 044898 59 CNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGE- 137 (396)
Q Consensus 59 C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~- 137 (396)
|.|.++.|....++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++..
T Consensus 7 C~~~~l~c~~~~l~----------------~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 7 CSGTEIRCNSKGLT----------------SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp EETTEEECCSSCCS----------------SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred eCCCEEEcCCCCcc----------------cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 67888888743322 2333332 5899999999999866556689999999999999998733
Q ss_pred -cccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCC-chhhccCCEEEccCCcCcccCCCCCCCC
Q 044898 138 -IPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVP-PFLSHALTRLDLKHNDLSGSLAPDSLPP 215 (396)
Q Consensus 138 -~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 215 (396)
.+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+ ...+
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------------~~l~ 126 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---------------------LSLR 126 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTT---------------------TTCT
T ss_pred CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhh---------------------hhcc
Confidence 3667778999999999999988 567778889999999999998874332 111 1225
Q ss_pred CCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcc-cCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCC
Q 044898 216 SVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNG-NIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHN 294 (396)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N 294 (396)
+|++|++++|.+++..+..+..+++|++|++++|.+++ .+|..+.. +++|++|++++|
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------------l~~L~~L~Ls~n 185 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------------LRNLTFLDLSQC 185 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------CTTCCEEECTTS
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh---------------------CcCCCEEECCCC
Confidence 66666666666666666667777777777777777764 34444433 344555555555
Q ss_pred CCcccCCcC---CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCC-ccchhcccCccCCC
Q 044898 295 MLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIP-SSSSLCLQYNCMVP 370 (396)
Q Consensus 295 ~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~ 370 (396)
.+++..|.. +++|+.|++++|++++..+..+..+ ++|++|++++|++++..+..+..++ +|+.|++++|
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N---- 258 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL---NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN---- 258 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC---TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC----
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc---ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC----
Confidence 555444433 3456777777777776555566666 7888888888888887777777774 8888888888
Q ss_pred CCCCCCCCCCCC
Q 044898 371 PVQMQCPLRSGK 382 (396)
Q Consensus 371 ~~~c~c~~~~~~ 382 (396)
++.|+|+..|+.
T Consensus 259 ~~~~~c~~~~~~ 270 (306)
T 2z66_A 259 DFACTCEHQSFL 270 (306)
T ss_dssp CEECSGGGHHHH
T ss_pred CeecccChHHHH
Confidence 666888865543
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2e-28 Score=237.32 Aligned_cols=271 Identities=21% Similarity=0.228 Sum_probs=141.4
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|++++ +.+.+ +| .++++++|++|++++|.+++. | +..+++|++|++++|.+++. + ++.+++|
T Consensus 42 ~~L~~L~Ls~-----n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 42 ATLTSLDCHN-----SSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp TTCCEEECCS-----SCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred CCCCEEEccC-----CCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 3566666663 33443 23 466666666666666666653 2 56666666666666666643 2 5666666
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLS 228 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 228 (396)
++|++++|++++ +| +..+++|++|++++|++++ ++..-.++|++|++++|...+.++. ...++|+.|++++|+++
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCccccccc-ccCCcCCEEECCCCccc
Confidence 666666666664 22 5566666666666666654 2322224555555555533333321 22344555555555544
Q ss_pred ccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC----
Q 044898 229 GPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---- 303 (396)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---- 303 (396)
+. | +..+++|++|++++|++++. + +... +|++|++++|++++ +|...+++|+.|++++|.+++..+..
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred ee-c--cccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 32 1 34444444444444444422 1 2222 44444444444444 22333444444444444444333222
Q ss_pred ----------------------------CcccceEEeecccccccCchh--------HHhcccCCcccEEEccCCcCCCC
Q 044898 304 ----------------------------FSTVQNLYLNNNRFTGQVPGS--------FVDHLLDASIQILYLQHNFLTGI 347 (396)
Q Consensus 304 ----------------------------~~~L~~L~L~~N~l~~~~~~~--------~~~~~~~~~L~~L~L~~N~l~~~ 347 (396)
+++|+.|++++|...+.+|.. +... ++|++|++++|+++++
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~---~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN---PKLVYLYLNNTELTEL 333 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC---TTCCEEECTTCCCSCC
T ss_pred CEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhc---ccCCEEECCCCccccc
Confidence 244555566666544444432 2222 6777788888887776
Q ss_pred CCCCCCCCCccchhcccCccCCC
Q 044898 348 EINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 348 ~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
+ +..+++|+.|++++|++++
T Consensus 334 ~---l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 334 D---VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp C---CTTCTTCSEEECCSSCCCB
T ss_pred c---cccCCcCcEEECCCCCCCC
Confidence 2 5567777777777777663
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=1.3e-29 Score=253.09 Aligned_cols=279 Identities=23% Similarity=0.291 Sum_probs=228.2
Q ss_pred CCCCCCCCCCCCcceeE--------eCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcC
Q 044898 49 FASWDFTSDPCNFAGVY--------CDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQ 120 (396)
Q Consensus 49 ~~~W~~~~~~C~w~gv~--------c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 120 (396)
+..|....++|.|.|.. |....++.|++++ ++++ .+|..+. ++|++|++++|.++. +|. .
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~-----n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~ 79 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---L 79 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS-----SCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---C
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecC-----CCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---c
Confidence 45677667888997643 3335789999994 5555 6777665 799999999999985 554 6
Q ss_pred CCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEcc
Q 044898 121 LKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLK 200 (396)
Q Consensus 121 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~ 200 (396)
+++|++|+|++|.++ .+|. .+++|++|++++|++++ +|. .+++|+.|++++|+++ .+|..+ ++|++|+++
T Consensus 80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~l-~~L~~L~Ls 149 (622)
T 3g06_A 80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVLP-PGLQELSVS 149 (622)
T ss_dssp CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCCC-TTCCEEECC
T ss_pred CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCCC-CCCCEEECc
Confidence 799999999999998 4565 78999999999999995 454 6789999999999998 466643 899999999
Q ss_pred CCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCC
Q 044898 201 HNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQP 280 (396)
Q Consensus 201 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~ 280 (396)
+|.+.+... ..++|+.|++++|.+++. | ..+++|+.|++++|.++ .+|..+ .+|+.|++++|.++....
T Consensus 150 ~N~l~~l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~-~l~~~~--~~L~~L~L~~N~l~~l~~- 218 (622)
T 3g06_A 150 DNQLASLPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLA-SLPTLP--SELYKLWAYNNRLTSLPA- 218 (622)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCCCC--TTCCEEECCSSCCSSCCC-
T ss_pred CCcCCCcCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCC-CCCCcc--chhhEEECcCCcccccCC-
Confidence 999986432 347899999999999964 4 56789999999999998 466533 479999999999986443
Q ss_pred CCCCCcCEEEccCCCCcccCCcCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccch
Q 044898 281 PDQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSS 360 (396)
Q Consensus 281 ~~~~~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 360 (396)
.+++|+.|++++|.|++ +|..+++|+.|++++|+|+ .+|. .. ++|++|+|++|+|+.+ +..+..+++|+.
T Consensus 219 -~~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~---~~---~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~ 288 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM---LP---SGLLSLSVYRNQLTRL-PESLIHLSSETT 288 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CC---TTCCEEECCSSCCCSC-CGGGGGSCTTCE
T ss_pred -CCCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc---cc---ccCcEEeCCCCCCCcC-CHHHhhccccCE
Confidence 35889999999999986 6677889999999999998 6665 33 7899999999999987 456888999999
Q ss_pred hcccCccCCC
Q 044898 361 LCLQYNCMVP 370 (396)
Q Consensus 361 L~l~~N~l~~ 370 (396)
|++++|++++
T Consensus 289 L~L~~N~l~~ 298 (622)
T 3g06_A 289 VNLEGNPLSE 298 (622)
T ss_dssp EECCSCCCCH
T ss_pred EEecCCCCCC
Confidence 9999998863
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.2e-30 Score=239.16 Aligned_cols=230 Identities=25% Similarity=0.364 Sum_probs=189.2
Q ss_pred CCCCEEEccCCcCcc--ccchhhcCCCCCcEEeccC-CcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcE
Q 044898 98 TSLAELSIVPGRVIG--KLPQSLSQLKNLRFFAISR-NFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSN 174 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 174 (396)
.++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|++++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478899999999998 7889999999999999995 8888888999999999999999999998888888999999999
Q ss_pred EEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCC-CCCEEeccCCcCcc
Q 044898 175 VILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLD-QLNYLDLSLNQFNG 253 (396)
Q Consensus 175 L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~ 253 (396)
|++++|.+++.+|..+. ..++|++|++++|++++.+|..+..++ +|++|++++|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~---------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS---------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp EECCSSEEESCCCGGGG---------------------GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred EeCCCCccCCcCChHHh---------------------cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 99999988877765543 125677777777777777778888887 89999999999998
Q ss_pred cCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCc---CCcccceEEeecccccccCchhHHhccc
Q 044898 254 NIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISP---SFSTVQNLYLNNNRFTGQVPGSFVDHLL 330 (396)
Q Consensus 254 ~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~---~~~~L~~L~L~~N~l~~~~~~~~~~~~~ 330 (396)
.+|..+.... |++|++++|.+++..|. .+++|+.|++++|.+++..|. +..+
T Consensus 189 ~~~~~~~~l~----------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l-- 243 (313)
T 1ogq_A 189 KIPPTFANLN----------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS-- 243 (313)
T ss_dssp ECCGGGGGCC----------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC--
T ss_pred cCChHHhCCc----------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc--
Confidence 8888776643 55555556655555554 356799999999999977665 5555
Q ss_pred CCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCC
Q 044898 331 DASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQM 374 (396)
Q Consensus 331 ~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c 374 (396)
++|++|+|++|++++..+..+..+++|+.|++++|+++|.+.-
T Consensus 244 -~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 244 -KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp -TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred -CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 8999999999999977678888999999999999999865543
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=9.5e-29 Score=249.52 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=121.4
Q ss_pred ecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCC
Q 044898 89 RLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGT 168 (396)
Q Consensus 89 ~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 168 (396)
.+|+.+. +++++|+|++|.|++..+..|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4555443 47999999999999888889999999999999999999888889999999999999999999777788999
Q ss_pred CcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccC-CCC-CCCCCCcEEEcccCCCCccchhh
Q 044898 169 LPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSL-APD-SLPPSVQYLSLSWNRLSGPVDRL 234 (396)
Q Consensus 169 l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~-~~~-~~~~~L~~L~L~~n~l~~~~~~~ 234 (396)
+++|++|++++|++++..+..+. ++|++|++++|.+.+.. +.. ...++|++|++++|++++..+..
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 99999999999999965555565 89999999999997643 331 22389999999999887655443
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-30 Score=241.43 Aligned_cols=251 Identities=19% Similarity=0.178 Sum_probs=160.2
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|++++. + ..+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~--- 99 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGP--- 99 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECT---
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCC---
Confidence 3444455555555555555544555555555555555555553332 45555555555555554421 1 124
Q ss_pred EEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcc
Q 044898 174 NVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNG 253 (396)
Q Consensus 174 ~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 253 (396)
+|+.|++++|.+.+..+. ..++|+.|++++|++++..+..+..+++|++|++++|.+++
T Consensus 100 -------------------~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 100 -------------------SIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp -------------------TCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred -------------------CcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 455555555555443332 13567777777777776666667777777777777777776
Q ss_pred cCCccccC--cccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCc--CCcccceEEeecccccccCchhHHhcc
Q 044898 254 NIPGRIFT--FPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISP--SFSTVQNLYLNNNRFTGQVPGSFVDHL 329 (396)
Q Consensus 254 ~~p~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~--~~~~L~~L~L~~N~l~~~~~~~~~~~~ 329 (396)
..+..+.. .+|++|++++|.+++......+++|++|++++|.+++..+. .+++|+.|++++|+++ .+|..+..+
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l- 236 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS- 236 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCC-
T ss_pred ccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcC-
Confidence 55555542 36777777777777655445678899999999988865443 3467899999999998 567777666
Q ss_pred cCCcccEEEccCCcCC-CCCCCCCCCCCccchhcccC-ccCCCCCCCCCCCC
Q 044898 330 LDASIQILYLQHNFLT-GIEINPTAEIPSSSSLCLQY-NCMVPPVQMQCPLR 379 (396)
Q Consensus 330 ~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~-N~l~~~~~c~c~~~ 379 (396)
++|++|++++|.++ +..+..+..++.|+.+++++ +.+.|...+.|...
T Consensus 237 --~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~ 286 (317)
T 3o53_A 237 --QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (317)
T ss_dssp --TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred --CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence 89999999999998 44455566788899999884 45666666666543
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=9.4e-28 Score=232.66 Aligned_cols=264 Identities=17% Similarity=0.143 Sum_probs=210.7
Q ss_pred eecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccC
Q 044898 88 GRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIG 167 (396)
Q Consensus 88 ~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 167 (396)
+..+..++++++|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|++++. + +.
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred cccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence 33445788899999999999999975 5 699999999999999999964 4 89999999999999999964 3 89
Q ss_pred CCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEecc
Q 044898 168 TLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLS 247 (396)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 247 (396)
.+++|++|++++|++++ +|-.-.++|++|++++|.+++. + ....++|++|++++|+..+.+ .+..+++|++|+++
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CCCTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCCcCCEEECCCCcCCe-ecCCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999999999995 5533338999999999999975 3 355689999999999665555 47889999999999
Q ss_pred CCcCcccCCccccCc-ccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCCcccceEEeecccccccCchhHH
Q 044898 248 LNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQVPGSFV 326 (396)
Q Consensus 248 ~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~ 326 (396)
+|++++ +| +... +|++|++++|.+++. +...+++|++|++++|++++.....+++|+.|++++|++++..+..+
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l- 253 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTL- 253 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTC-
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHC-
Confidence 999995 55 4444 899999999999986 56688999999999999998655567789999999999997644332
Q ss_pred hcccCCcccEEEccCCcCCCCCCC--------CCCCCCccchhcccCccCCCCCCC
Q 044898 327 DHLLDASIQILYLQHNFLTGIEIN--------PTAEIPSSSSLCLQYNCMVPPVQM 374 (396)
Q Consensus 327 ~~~~~~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~c 374 (396)
++|+.|++++|+++.+... .+..+++|+.|++++|...+...|
T Consensus 254 -----~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 254 -----SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp -----TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred -----CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 5566666666655554322 123456677777777765555444
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=5.3e-30 Score=236.56 Aligned_cols=240 Identities=20% Similarity=0.242 Sum_probs=136.0
Q ss_pred cCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCc-cccccccC-------CCCCCCEEEeecCcCCCCCCccc
Q 044898 95 GKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVS-GEIPAALG-------QLRGLRTLDLSYNQLTGAIPQSI 166 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~ 166 (396)
+..++|++|++++|.+ .+|..+... |++|++++|.++ ..+|..+. ++++|++|++++|++++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445666667777766 455555443 666777777663 34454444 56777777777777776666655
Q ss_pred --CCCcCCcEEEccCCcccccCCchhh-------ccCCEEEccCCcCcccCCC-CCCCCCCcEEEcccCCCCcc--chhh
Q 044898 167 --GTLPELSNVILCHNKLSGSVPPFLS-------HALTRLDLKHNDLSGSLAP-DSLPPSVQYLSLSWNRLSGP--VDRL 234 (396)
Q Consensus 167 --~~l~~L~~L~l~~n~l~~~~p~~~~-------~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~--~~~~ 234 (396)
..+++|++|++++|++++. |..+. ++|++|++++|.+.+..+. ....++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6677777777777777754 55443 5677777777777665543 22237788888888877654 2334
Q ss_pred h--cCCCCCCEEeccCCcCcc--cCCcccc-C-cccCEEEccCCcccCcCCCC---CCCCcCEEEccCCCCcccCCcCC-
Q 044898 235 L--SRLDQLNYLDLSLNQFNG--NIPGRIF-T-FPITNLQLQRNAFAGPVQPP---DQVTIPTVDLSHNMLSGQISPSF- 304 (396)
Q Consensus 235 l--~~l~~L~~L~l~~n~l~~--~~p~~~~-~-~~L~~L~l~~n~l~~~~~~~---~~~~L~~L~ls~N~l~~~~~~~~- 304 (396)
+ ..+++|++|++++|++++ .++..+. . .+|++|++++|.+++..+.. .+++|++|++++|.|+ .+|..+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 4 778888888888888872 2222221 2 14555555555555433211 2345555555555554 333222
Q ss_pred cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCC
Q 044898 305 STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLT 345 (396)
Q Consensus 305 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~ 345 (396)
++|+.|++++|++++. |. +..+ ++|++|++++|+++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l---~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDEL---PQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTS---CEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCCC-hh-HhhC---CCCCEEeccCCCCC
Confidence 2444444444444422 32 3333 44444444444444
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.9e-27 Score=229.07 Aligned_cols=247 Identities=18% Similarity=0.197 Sum_probs=145.3
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEc
Q 044898 98 TSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVIL 177 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 177 (396)
++|++|++++|.+++ +| .|.++++|++|++++|.+++ +|..+ .+|++|++++|++++ +| .+..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 467777777777775 55 47777777777777777764 44432 467777777777764 44 4667777777777
Q ss_pred cCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCc
Q 044898 178 CHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPG 257 (396)
Q Consensus 178 ~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 257 (396)
++|++++ +|... .+|+.|++++|.+. .+|.....++|++|++++|++++. |. .+++|++|++++|++++ +|.
T Consensus 203 ~~N~l~~-l~~~~-~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~ 274 (454)
T 1jl5_A 203 DNNSLKK-LPDLP-LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPE 274 (454)
T ss_dssp CSSCCSS-CCCCC-TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCCcCCc-CCCCc-CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCc
Confidence 7777663 33322 46666666666665 333333346666666666666542 22 12455555555555553 333
Q ss_pred ccc------------------CcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCCcccceEEeecccccc
Q 044898 258 RIF------------------TFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTG 319 (396)
Q Consensus 258 ~~~------------------~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N~l~~ 319 (396)
... ..+|++|++++|.+++... ..++|++|++++|++++ +|..+++|+.|++++|+++
T Consensus 275 ~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLA- 350 (454)
T ss_dssp CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-
T ss_pred ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccC--CcCcCCEEECCCCcccc-ccccCCcCCEEECCCCccc-
Confidence 210 0234445555554444211 12578889999888886 6667788999999999998
Q ss_pred cCchhHHhcccCCcccEEEccCCcCCCC--CCCCCCCC-------------CccchhcccCccCCC
Q 044898 320 QVPGSFVDHLLDASIQILYLQHNFLTGI--EINPTAEI-------------PSSSSLCLQYNCMVP 370 (396)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~L~~N~l~~~--~~~~~~~l-------------~~L~~L~l~~N~l~~ 370 (396)
.+|. .+ ++|++|++++|+++++ .+..+..+ ++|+.|++++|.+++
T Consensus 351 ~lp~---~l---~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 351 EVPE---LP---QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCCC---CC---TTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred cccc---hh---hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 5665 23 7899999999999884 24555555 789999999998875
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.7e-28 Score=236.30 Aligned_cols=265 Identities=17% Similarity=0.220 Sum_probs=192.0
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCC-------------cEEeccCCcCc
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNL-------------RFFAISRNFVS 135 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~ 135 (396)
.++++++++ .+.+ |.+|++++++++|++|++++|.+.+.+|..++++++| ++|++++|.++
T Consensus 11 ~~L~~L~l~-----~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 11 TFLQEPLRH-----SSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccchhhhcc-----cCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 478889998 4567 8899999999999999999999999999999988865 99999999998
Q ss_pred cccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCC
Q 044898 136 GEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPP 215 (396)
Q Consensus 136 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 215 (396)
+ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++++ +|.. .++|++|++++|.+.+ +|.....+
T Consensus 85 ~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~-~~~L~~L~L~~n~l~~-lp~~~~l~ 153 (454)
T 1jl5_A 85 S-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL-PPLLEYLGVSNNQLEK-LPELQNSS 153 (454)
T ss_dssp C-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC-CTTCCEEECCSSCCSS-CCCCTTCT
T ss_pred c-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC-CCCCCEEECcCCCCCC-CcccCCCC
Confidence 5 4442 4789999999999996 6653 4789999999999984 4432 2689999999999987 55545558
Q ss_pred CCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCCCCCCcCEEEccCC
Q 044898 216 SVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHN 294 (396)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N 294 (396)
+|++|++++|++++ +|.. .++|++|++++|++++ +| .+... +|++|++++|.+++... ..++|++|++++|
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n 225 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNN 225 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSS
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCC
Confidence 99999999999986 4443 3589999999999985 66 45555 89999999999987332 2368999999999
Q ss_pred CCcccCCc--CCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCC
Q 044898 295 MLSGQISP--SFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 295 ~l~~~~~~--~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 370 (396)
.++ .+|. .+++|+.|++++|++++ +|.. . ++|++|++++|++++++.. .++|+.|++++|.+++
T Consensus 226 ~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~---~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 226 ILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---P---PSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---C---TTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSE
T ss_pred cCC-cccccCCCCCCCEEECCCCcCCc-cccc---c---cccCEEECCCCcccccCcc----cCcCCEEECcCCccCc
Confidence 998 4553 34678999999999984 5542 2 6899999999999886432 3677788888887764
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1e-27 Score=218.28 Aligned_cols=225 Identities=21% Similarity=0.195 Sum_probs=164.9
Q ss_pred EeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCC
Q 044898 65 YCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQ 144 (396)
Q Consensus 65 ~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 144 (396)
.|.....+.++.++ .++. .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|..
T Consensus 7 ~C~~~~~~~~~c~~-----~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 7 VCYNEPKVTTSCPQ-----QGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp EEECSSSCEEECCS-----SCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred eECCCCCeEEEcCc-----CCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 45443335666663 3443 345433 468999999999999887788999999999999999999888889999
Q ss_pred CCCCCEEEeecCc-CCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCC-CCCCCCcEE
Q 044898 145 LRGLRTLDLSYNQ-LTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPD-SLPPSVQYL 220 (396)
Q Consensus 145 l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L 220 (396)
+++|++|++++|+ ++...|..+..+++|++|++++|.+++..|..+. ++|++|++++|.+.+..+.. ...++|++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 9999999999997 8766688899999999999999999976666665 78888888888887655542 234788888
Q ss_pred EcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCC--CCCCCcCEEEccCCCCc
Q 044898 221 SLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQP--PDQVTIPTVDLSHNMLS 297 (396)
Q Consensus 221 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~--~~~~~L~~L~ls~N~l~ 297 (396)
++++|++++..+..+..+++|++|++++|.+++..|..+... +|++|++++|.+++..+. ..+++|+.|++++|.+.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 888888887776678888888888888888886667666553 555555555555443221 13444444444444443
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.6e-29 Score=243.87 Aligned_cols=243 Identities=20% Similarity=0.159 Sum_probs=166.0
Q ss_pred CCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCC
Q 044898 123 NLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHN 202 (396)
Q Consensus 123 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n 202 (396)
+|++|+|++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++. |.. ++|+.|++++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~~~--~~L~~L~L~~N 109 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-LVG--PSIETLHAANN 109 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-EEC--TTCCEEECCSS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-CCC--CCcCEEECcCC
Confidence 45555555555554444455555555555555555543322 45555555555555555422 111 45666666666
Q ss_pred cCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCcccc-C-cccCEEEccCCcccCcCCC
Q 044898 203 DLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIF-T-FPITNLQLQRNAFAGPVQP 280 (396)
Q Consensus 203 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~-~~L~~L~l~~n~l~~~~~~ 280 (396)
.+.+..+. ..++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. . .+|++|++++|.+++..+.
T Consensus 110 ~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~ 187 (487)
T 3oja_A 110 NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187 (487)
T ss_dssp CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC
T ss_pred cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc
Confidence 66554443 236788888888888887777888888888888888888877777765 2 3888888888888877666
Q ss_pred CCCCCcCEEEccCCCCcccCCc--CCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCC-CCCCCCCCCCCc
Q 044898 281 PDQVTIPTVDLSHNMLSGQISP--SFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLT-GIEINPTAEIPS 357 (396)
Q Consensus 281 ~~~~~L~~L~ls~N~l~~~~~~--~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~ 357 (396)
..+++|+.|++++|.+++..+. .+++|+.|++++|.++ .+|..+..+ ++|+.|++++|.+. +..+..+..++.
T Consensus 188 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l---~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS---QNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCC---TTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccC---CCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 6788999999999999876554 3467999999999999 477777666 89999999999998 223445567888
Q ss_pred cchhccc-------CccCCCCCCCCCCCCC
Q 044898 358 SSSLCLQ-------YNCMVPPVQMQCPLRS 380 (396)
Q Consensus 358 L~~L~l~-------~N~l~~~~~c~c~~~~ 380 (396)
++.+++. .+ ++.|.|+...
T Consensus 264 L~~l~~~~~~~~~~~~----~~~c~~~~~~ 289 (487)
T 3oja_A 264 VQTVAKQTVKKLTGQN----EEECTVPTLG 289 (487)
T ss_dssp HHHHHHHHHHHHTSSS----SCCCSSTTCE
T ss_pred CcEEeccccccccCCC----cccccCCccc
Confidence 8888886 44 6778886543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4e-27 Score=228.50 Aligned_cols=232 Identities=17% Similarity=0.121 Sum_probs=196.3
Q ss_pred cceeEeCC-----------CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEec
Q 044898 61 FAGVYCDA-----------DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAI 129 (396)
Q Consensus 61 w~gv~c~~-----------~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 129 (396)
|..|.|.. .+++.|+|+ ++.+.+..|..|.++++|++|++++|.+++..+..|.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLM-----ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECc-----CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 45666753 378999999 46788888899999999999999999999988899999999999999
Q ss_pred cCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCch-hh--ccCCEEEccCCcCcc
Q 044898 130 SRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPF-LS--HALTRLDLKHNDLSG 206 (396)
Q Consensus 130 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~--~~L~~L~l~~n~l~~ 206 (396)
++|.+++..+..|..+++|++|++++|+++...+..|..+++|++|++++|...+.++.. +. ++|+.|++++|.+.+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 999999777778999999999999999999777778999999999999996554466654 43 789999999999986
Q ss_pred cCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCC--CC
Q 044898 207 SLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP--DQ 283 (396)
Q Consensus 207 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~--~~ 283 (396)
. +.....++|+.|++++|++++..|..|..+++|++|++++|++++..|..+... +|++|++++|++++..+.. .+
T Consensus 211 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 5 444556899999999999999999999999999999999999997777777665 7888888888887654432 56
Q ss_pred CCcCEEEccCCCCcc
Q 044898 284 VTIPTVDLSHNMLSG 298 (396)
Q Consensus 284 ~~L~~L~ls~N~l~~ 298 (396)
++|+.|++++|.+..
T Consensus 290 ~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 290 RYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEccCCCcCC
Confidence 777888888777653
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.5e-27 Score=225.76 Aligned_cols=231 Identities=18% Similarity=0.120 Sum_probs=196.7
Q ss_pred cceeEeCC-----------CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEec
Q 044898 61 FAGVYCDA-----------DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAI 129 (396)
Q Consensus 61 w~gv~c~~-----------~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 129 (396)
|..|.|.. ..++.|+|+ .+.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLH-----ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECC-----SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEcc-----CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 55677764 367899999 46788888889999999999999999999988899999999999999
Q ss_pred cCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCch-hh--ccCCEEEccCCcCcc
Q 044898 130 SRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPF-LS--HALTRLDLKHNDLSG 206 (396)
Q Consensus 130 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~--~~L~~L~l~~n~l~~ 206 (396)
++|.++...+..|..+++|++|++++|+++...+..|..+++|++|++++|...+.++.. +. ++|+.|++++|.+..
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 999999777778999999999999999999777778999999999999996555455553 43 789999999999985
Q ss_pred cCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCC--CC
Q 044898 207 SLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPP--DQ 283 (396)
Q Consensus 207 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~--~~ 283 (396)
. |.....++|+.|++++|++++..|..|..+++|++|++++|++++..+..+... +|++|++++|++++..+.. .+
T Consensus 200 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 I-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 4 444556899999999999999989999999999999999999997777777765 8888888888888755433 56
Q ss_pred CCcCEEEccCCCCc
Q 044898 284 VTIPTVDLSHNMLS 297 (396)
Q Consensus 284 ~~L~~L~ls~N~l~ 297 (396)
++|+.|++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 78888888888765
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.6e-27 Score=221.28 Aligned_cols=233 Identities=19% Similarity=0.240 Sum_probs=194.1
Q ss_pred CCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEE
Q 044898 96 KLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175 (396)
Q Consensus 96 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 175 (396)
...+++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 67888899999999999999999 88999999999999999999999 789999999999999
Q ss_pred EccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccC
Q 044898 176 ILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNI 255 (396)
Q Consensus 176 ~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 255 (396)
++++|++.+.+|..+.. ..+ .+ .....++|++|++++|+++ .+|..+..+++|++|++++|+++ .+
T Consensus 156 ~L~~n~~~~~~p~~~~~----~~~-----~~---~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l 221 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS----TDA-----SG---EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-AL 221 (328)
T ss_dssp EEEEETTCCCCCSCSEE----EC------CC---CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CC
T ss_pred ECCCCCCccccChhHhh----ccc-----hh---hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cC
Confidence 99999888888876542 100 00 0112378888999998888 66778888899999999999888 45
Q ss_pred CccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcccCC
Q 044898 256 PGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDA 332 (396)
Q Consensus 256 p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 332 (396)
|..+.. +++|++|++++|.+.+.+|.. +++|+.|++++|.+.+.+|..+..+ +
T Consensus 222 ~~~l~~---------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l---~ 277 (328)
T 4fcg_A 222 GPAIHH---------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL---T 277 (328)
T ss_dssp CGGGGG---------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC---T
T ss_pred chhhcc---------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC---C
Confidence 554443 567888888888888777765 4579999999999999999999988 9
Q ss_pred cccEEEccCCcCCCCCCCCCCCCCccchhcccCccCC
Q 044898 333 SIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 333 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
+|++|+|++|.+.+..+..+..+++++.+++..+.+.
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999988877888999999999999888554
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.7e-29 Score=228.43 Aligned_cols=242 Identities=22% Similarity=0.287 Sum_probs=199.7
Q ss_pred hhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCC-CCCCcccC-------CCcCCcEEEccCCcccccCCc
Q 044898 117 SLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLT-GAIPQSIG-------TLPELSNVILCHNKLSGSVPP 188 (396)
Q Consensus 117 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~l~~n~l~~~~p~ 188 (396)
.+++.++|++|++++|.+ .+|..+... |++|++++|+++ ..+|..+. ++++|++|++++|++++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 356678899999999999 677766554 899999999984 45666665 789999999999999998998
Q ss_pred hh--h--ccCCEEEccCCcCcccCCCC-C-----CCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCccc--CC
Q 044898 189 FL--S--HALTRLDLKHNDLSGSLAPD-S-----LPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGN--IP 256 (396)
Q Consensus 189 ~~--~--~~L~~L~l~~n~l~~~~~~~-~-----~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p 256 (396)
.+ . ++|++|++++|.+.+. |.. . ..++|++|++++|++++..+..++.+++|++|++++|++.+. .|
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 75 3 8899999999999976 321 1 127999999999999999989999999999999999998865 33
Q ss_pred ccc--cCc-ccCEEEccCCcccCcC--CC---CCCCCcCEEEccCCCCcccCCc----CCcccceEEeecccccccCchh
Q 044898 257 GRI--FTF-PITNLQLQRNAFAGPV--QP---PDQVTIPTVDLSHNMLSGQISP----SFSTVQNLYLNNNRFTGQVPGS 324 (396)
Q Consensus 257 ~~~--~~~-~L~~L~l~~n~l~~~~--~~---~~~~~L~~L~ls~N~l~~~~~~----~~~~L~~L~L~~N~l~~~~~~~ 324 (396)
..+ ... +|++|++++|.+++.. +. ..+++|++|++++|.+++..|. .+++|+.|++++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 344 444 9999999999998522 11 1568999999999999986642 2468999999999999 77876
Q ss_pred HHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCC
Q 044898 325 FVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPP 371 (396)
Q Consensus 325 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 371 (396)
+. ++|++|+|++|+|++++ . +..+++|+.|++++|+++++
T Consensus 272 ~~-----~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP-----AKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC-----SEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTCC
T ss_pred cc-----CCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCCC
Confidence 53 68999999999999983 3 88999999999999988753
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.9e-27 Score=216.04 Aligned_cols=202 Identities=20% Similarity=0.173 Sum_probs=157.9
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccc--cchhhcCCCCCcEEeccCCcCccccccccCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGK--LPQSLSQLKNLRFFAISRNFVSGEIPAALGQLR 146 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 146 (396)
.++++|++++ +.+....+..|.++++|++|++++|.++.. .+..+.++++|++|++++|.++ .+|..+..++
T Consensus 28 ~~l~~L~L~~-----n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELES-----NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCT
T ss_pred CCCCEEECCC-----CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCC
Confidence 5799999995 455543334579999999999999999844 4778889999999999999998 5677899999
Q ss_pred CCCEEEeecCcCCCCCC-cccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcc-cCCC-CCCCCCCcEEE
Q 044898 147 GLRTLDLSYNQLTGAIP-QSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSG-SLAP-DSLPPSVQYLS 221 (396)
Q Consensus 147 ~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~-~~~~-~~~~~~L~~L~ 221 (396)
+|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+. ++|++|++++|.+.+ ..+. ....++|++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 99999999999986554 5899999999999999999977777665 788899999888876 3333 22337888888
Q ss_pred cccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccC
Q 044898 222 LSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAG 276 (396)
Q Consensus 222 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~ 276 (396)
+++|++++..|..+..+++|++|++++|++++..+..+... +|++|++++|.+++
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 88888887778888888888888888888875444444432 44444444444444
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.6e-27 Score=215.71 Aligned_cols=205 Identities=20% Similarity=0.130 Sum_probs=181.2
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCc-CccccccccCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNF-VSGEIPAALGQLRG 147 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~ 147 (396)
.++++|+++ ++.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|. ++...|..+..+++
T Consensus 32 ~~l~~L~l~-----~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLH-----GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TTCSEEECT-----TSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCceEEEee-----CCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 478999999 467777777789999999999999999998889999999999999999997 88777889999999
Q ss_pred CCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCC-CCCCCCCcEEEccc
Q 044898 148 LRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAP-DSLPPSVQYLSLSW 224 (396)
Q Consensus 148 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~ 224 (396)
|++|++++|++++..|..+..+++|++|++++|++++..+..+. ++|+.|++++|.+.+..+. ....++|+.|++++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 99999999999988888999999999999999999965555554 8999999999999976664 23348999999999
Q ss_pred CCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcC
Q 044898 225 NRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPV 278 (396)
Q Consensus 225 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~ 278 (396)
|.+++..|..+..+++|++|++++|++++..+..+... +|++|++++|.+....
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 99999989999999999999999999996555556665 8999999999998644
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-28 Score=226.30 Aligned_cols=238 Identities=21% Similarity=0.204 Sum_probs=169.9
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|+|++ +.+.+..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|
T Consensus 34 ~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L 101 (317)
T 3o53_A 34 WNVKELDLSG-----NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (317)
T ss_dssp GGCSEEECTT-----SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred CCCCEEECcC-----CccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence 4799999994 56777777889999999999999999987665 899999999999999998543 34899
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCC--CCCCcEEEccc
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSL--PPSVQYLSLSW 224 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~ 224 (396)
++|++++|++++..+. .+++|++|++++|++++..+..+. ++|++|++++|.+.+..+.... .++|++|++++
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 9999999999865443 367899999999999865555553 5677777777776654443221 25666666666
Q ss_pred CCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCc--
Q 044898 225 NRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISP-- 302 (396)
Q Consensus 225 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~-- 302 (396)
|.+++.. ....+++|++|++++|++++ +|..+. .+++|+.|++++|.+++ +|.
T Consensus 179 N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~---------------------~l~~L~~L~L~~N~l~~-l~~~~ 233 (317)
T 3o53_A 179 NFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQ---------------------SAAGVTWISLRNNKLVL-IEKAL 233 (317)
T ss_dssp SCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGG---------------------GGTTCSEEECTTSCCCE-ECTTC
T ss_pred CcCcccc--cccccccCCEEECCCCcCCc-chhhhc---------------------ccCcccEEECcCCcccc-hhhHh
Confidence 6666442 22235666666666666653 333333 34566777777777664 333
Q ss_pred -CCcccceEEeeccccc-ccCchhHHhcccCCcccEEEccCC-cCCCCCC
Q 044898 303 -SFSTVQNLYLNNNRFT-GQVPGSFVDHLLDASIQILYLQHN-FLTGIEI 349 (396)
Q Consensus 303 -~~~~L~~L~L~~N~l~-~~~~~~~~~~~~~~~L~~L~L~~N-~l~~~~~ 349 (396)
.+++|+.|++++|.++ +.+|..+..+ ++|+.++++++ .+++..+
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~---~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKN---QRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTC---HHHHHHHHHHHHHHHSSSS
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhcc---ccceEEECCCchhccCCch
Confidence 3457888888888887 6777777777 88888888844 4665433
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.5e-26 Score=205.78 Aligned_cols=214 Identities=20% Similarity=0.238 Sum_probs=161.4
Q ss_pred CCCCCcceeEeCC-CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcC
Q 044898 56 SDPCNFAGVYCDA-DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFV 134 (396)
Q Consensus 56 ~~~C~w~gv~c~~-~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 134 (396)
.+.|.|.|+.|.. ..++.+++++ ++++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~-----~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 73 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSS-----KKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTT-----SCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccC-----CCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc
Confidence 4789999999975 5678899994 4555 3665554 5899999999999988778899999999999999999
Q ss_pred ccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCC-
Q 044898 135 SGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPD- 211 (396)
Q Consensus 135 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~- 211 (396)
+...+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+. ++|++|++++|.+.+..+..
T Consensus 74 ~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 966666778999999999999999977777889999999999999999865555443 67777777777776544431
Q ss_pred CCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEc
Q 044898 212 SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDL 291 (396)
Q Consensus 212 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 291 (396)
...++|+.|++++|++++..+..|..+++|++|++++|++++..+..+. .+++|+.|++
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---------------------~l~~L~~L~l 212 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD---------------------SLEKLKMLQL 212 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT---------------------TCTTCCEEEC
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc---------------------cccCCCEEEe
Confidence 2236677777777777766666666677777777777766632222222 3567777777
Q ss_pred cCCCCcc
Q 044898 292 SHNMLSG 298 (396)
Q Consensus 292 s~N~l~~ 298 (396)
++|.+..
T Consensus 213 ~~N~~~c 219 (270)
T 2o6q_A 213 QENPWDC 219 (270)
T ss_dssp CSSCBCC
T ss_pred cCCCeeC
Confidence 7777654
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=9.8e-27 Score=218.44 Aligned_cols=252 Identities=17% Similarity=0.169 Sum_probs=199.6
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++|++++ +.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+.++++|
T Consensus 52 ~~L~~L~l~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSN-----NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECCC-----CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 4899999994 56777666689999999999999999999888899999999999999999996666669999999
Q ss_pred CEEEeecCcCCCCCC-cccCCCcCCcEEEccCCc-ccccCCchhh--ccCCEEEccCCcCcccCCCCC-CCCCCcEEEcc
Q 044898 149 RTLDLSYNQLTGAIP-QSIGTLPELSNVILCHNK-LSGSVPPFLS--HALTRLDLKHNDLSGSLAPDS-LPPSVQYLSLS 223 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~-l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~ 223 (396)
++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+. ++|+.|++++|.+.+..+... ..++|++|+++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 999999999995444 479999999999999994 6645455565 789999999999998766522 23899999999
Q ss_pred cCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcc----c
Q 044898 224 WNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSG----Q 299 (396)
Q Consensus 224 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~----~ 299 (396)
+|.++...+..+..+++|++|++++|.+++..+..+.. ......++.++++++.+++ .
T Consensus 207 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------------~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------------GETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred CCccccchhhhhhhcccccEEECCCCcccccccccccc------------------ccccchhhccccccccccCcchhh
Confidence 99998666666777999999999999998654433321 0123456677777777664 2
Q ss_pred CCc---CCcccceEEeecccccccCchh-HHhcccCCcccEEEccCCcCCCC
Q 044898 300 ISP---SFSTVQNLYLNNNRFTGQVPGS-FVDHLLDASIQILYLQHNFLTGI 347 (396)
Q Consensus 300 ~~~---~~~~L~~L~L~~N~l~~~~~~~-~~~~~~~~~L~~L~L~~N~l~~~ 347 (396)
+|. .+++|+.|++++|+++ .+|.. |..+ ++|++|++++|.++..
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l---~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL---TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC---TTCCEEECCSSCBCCC
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC---CCCCEEEeeCCCccCc
Confidence 332 4567888999999888 56655 4666 8899999999988763
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2e-25 Score=202.19 Aligned_cols=221 Identities=20% Similarity=0.246 Sum_probs=141.1
Q ss_pred EEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCc
Q 044898 102 ELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNK 181 (396)
Q Consensus 102 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 181 (396)
..+..+..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444455554 3455443 578899999998887777788888889999999888887666778888888888888888
Q ss_pred ccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCccc-CCcc
Q 044898 182 LSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGN-IPGR 258 (396)
Q Consensus 182 l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~ 258 (396)
+++..+..+. ++|++|++++|.+. +..+..+..+++|++|++++|.+++. +|..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLA-----------------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCC-----------------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred cCccChhhhcCCccccEEECCCCCcc-----------------------ccCchhcccCCCCCEEECcCCccceecCchh
Confidence 8755444443 44555555555444 33333444455555555555554431 2333
Q ss_pred ccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCCc---ccc----eEEeecccccccCchhHHhcccC
Q 044898 259 IFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFS---TVQ----NLYLNNNRFTGQVPGSFVDHLLD 331 (396)
Q Consensus 259 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~---~L~----~L~L~~N~l~~~~~~~~~~~~~~ 331 (396)
+.. +++|++|++++|++++..+..+. +|+ .|++++|.+++..+..+..
T Consensus 145 ~~~---------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~---- 199 (276)
T 2z62_A 145 FSN---------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE---- 199 (276)
T ss_dssp GGG---------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS----
T ss_pred hcc---------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC----
Confidence 322 33344444444444433332222 233 6777777777544444432
Q ss_pred CcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCC
Q 044898 332 ASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCP 377 (396)
Q Consensus 332 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~ 377 (396)
.+|++|++++|++++++...+..+++|+.+++++| +|.|+|+
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N----~~~c~c~ 241 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN----PWDCSCP 241 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS----CBCCCTT
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccCC----cccccCC
Confidence 57888888888888887777888888888888888 7778886
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=2.6e-28 Score=237.33 Aligned_cols=296 Identities=18% Similarity=0.179 Sum_probs=159.2
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccc-cCCC----CCCEEEccCCcCcc----ccchhhcCCCCCcEEeccCCcCccccc
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAI-GKLT----SLAELSIVPGRVIG----KLPQSLSQLKNLRFFAISRNFVSGEIP 139 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~-~~l~----~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p 139 (396)
.++++|++++ +.+.+..+..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+
T Consensus 56 ~~L~~L~Ls~-----n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 56 PALAELNLRS-----NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp TTCCEEECTT-----CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred CCcCEEeCCC-----CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 4566666663 33443322222 2233 46666666666663 346666666666666666666654333
Q ss_pred ccc-----CCCCCCCEEEeecCcCCCCC----CcccCCCcCCcEEEccCCcccccCCchhh-------ccCCEEEccCCc
Q 044898 140 AAL-----GQLRGLRTLDLSYNQLTGAI----PQSIGTLPELSNVILCHNKLSGSVPPFLS-------HALTRLDLKHND 203 (396)
Q Consensus 140 ~~l-----~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------~~L~~L~l~~n~ 203 (396)
..+ ...++|++|++++|++++.. +..+..+++|++|++++|.+++..+..+. ++|++|++++|.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 322 22455666666666665422 34455556666666666666543333332 266666666666
Q ss_pred CcccC----CC-CCCCCCCcEEEcccCCCCccc-----hhhhcCCCCCCEEeccCCcCccc----CCccccCc-ccCEEE
Q 044898 204 LSGSL----AP-DSLPPSVQYLSLSWNRLSGPV-----DRLLSRLDQLNYLDLSLNQFNGN----IPGRIFTF-PITNLQ 268 (396)
Q Consensus 204 l~~~~----~~-~~~~~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~~-~L~~L~ 268 (396)
+.+.. +. ....++|++|++++|.++... +..+..+++|++|++++|.+++. ++..+... +|++|+
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 65421 11 011256666666666665432 22233466666666666666643 33333332 666777
Q ss_pred ccCCcccCcCCC-------CCCCCcCEEEccCCCCcccC----Cc---CCcccceEEeecccccccCchhHHhccc--CC
Q 044898 269 LQRNAFAGPVQP-------PDQVTIPTVDLSHNMLSGQI----SP---SFSTVQNLYLNNNRFTGQVPGSFVDHLL--DA 332 (396)
Q Consensus 269 l~~n~l~~~~~~-------~~~~~L~~L~ls~N~l~~~~----~~---~~~~L~~L~L~~N~l~~~~~~~~~~~~~--~~ 332 (396)
+++|.+++..+. ...++|++|++++|.+++.. +. ..++|+.|++++|.+++..+..+...+. .+
T Consensus 291 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC
Confidence 776666532111 12246677777777666432 21 1245667777777666555555543211 14
Q ss_pred cccEEEccCCcCCC----CCCCCCCCCCccchhcccCccCC
Q 044898 333 SIQILYLQHNFLTG----IEINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 333 ~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
+|++|++++|++++ .-+..+..+++|++|++++|+++
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 67777777776663 11233444666777777777654
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.6e-24 Score=213.87 Aligned_cols=243 Identities=25% Similarity=0.268 Sum_probs=202.4
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++.|++++ +.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|
T Consensus 61 ~~L~~L~L~~-----N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L 123 (622)
T 3g06_A 61 AHITTLVIPD-----NNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGL 123 (622)
T ss_dssp TTCSEEEECS-----CCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTC
T ss_pred CCCcEEEecC-----CCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCc
Confidence 5799999995 4454 4555 57899999999999985 554 78999999999999995 454 67899
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLS 228 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 228 (396)
++|++++|++++ +|.. +++|++|++++|+++ .+|. ...+|+.|++++|.+.+.. ...++|+.|++++|.++
T Consensus 124 ~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~-~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 124 CKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA-LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred CEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC-ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC
Confidence 999999999994 5653 489999999999998 4554 3478999999999998643 34589999999999999
Q ss_pred ccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCCcccc
Q 044898 229 GPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFSTVQ 308 (396)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~L~ 308 (396)
+. |. .+++|+.|++++|.++ .+|..+ .+|++|++++|.+++.. ..+++|+.|++++|.|+. +|..+++|+
T Consensus 195 ~l-~~---~~~~L~~L~L~~N~l~-~l~~~~--~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~-lp~~~~~L~ 264 (622)
T 3g06_A 195 SL-PT---LPSELYKLWAYNNRLT-SLPALP--SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTS-LPMLPSGLL 264 (622)
T ss_dssp CC-CC---CCTTCCEEECCSSCCS-SCCCCC--TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCCTTCC
T ss_pred CC-CC---ccchhhEEECcCCccc-ccCCCC--CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCc-CCcccccCc
Confidence 64 33 3589999999999998 666532 47999999999999843 567899999999999994 556788999
Q ss_pred eEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCC
Q 044898 309 NLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINP 351 (396)
Q Consensus 309 ~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~ 351 (396)
.|+|++|+|+ .+|..+..+ ++|+.|+|++|.+++..+..
T Consensus 265 ~L~Ls~N~L~-~lp~~l~~l---~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 265 SLSVYRNQLT-RLPESLIHL---SSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp EEECCSSCCC-SCCGGGGGS---CTTCEEECCSCCCCHHHHHH
T ss_pred EEeCCCCCCC-cCCHHHhhc---cccCEEEecCCCCCCcCHHH
Confidence 9999999999 889899888 99999999999998765443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-26 Score=225.10 Aligned_cols=232 Identities=21% Similarity=0.243 Sum_probs=187.5
Q ss_pred CCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEE
Q 044898 96 KLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175 (396)
Q Consensus 96 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 175 (396)
.+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 33489999999999998888889999999999999999987665 889999999999999887432 23889999
Q ss_pred EccCCcccccCCchhhccCCEEEccCCcCcccCCCCC-CCCCCcEEEcccCCCCccchhhhc-CCCCCCEEeccCCcCcc
Q 044898 176 ILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS-LPPSVQYLSLSWNRLSGPVDRLLS-RLDQLNYLDLSLNQFNG 253 (396)
Q Consensus 176 ~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~ 253 (396)
++++|.+++..+. ..++|+.|++++|.+.+..+... ..++|+.|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 105 ~L~~N~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 105 HAANNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ECCSSCCCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECcCCcCCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 9999999855443 34789999999999988766422 238899999999999988888776 78999999999999985
Q ss_pred cCCccccCcccCEEEccCCcccCcCCCC-CCCCcCEEEccCCCCcccCCcC---CcccceEEeeccccc-ccCchhHHhc
Q 044898 254 NIPGRIFTFPITNLQLQRNAFAGPVQPP-DQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFT-GQVPGSFVDH 328 (396)
Q Consensus 254 ~~p~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~-~~~~~~~~~~ 328 (396)
. |......+|++|++++|.+++..+.. .+++|+.|++++|.+++ +|.. +++|+.|++++|.+. +.+|..+..+
T Consensus 184 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 184 V-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp E-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred c-cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 4 44444458999999999998865433 67899999999999986 4443 467899999999998 6677777766
Q ss_pred ccCCcccEEEcc
Q 044898 329 LLDASIQILYLQ 340 (396)
Q Consensus 329 ~~~~~L~~L~L~ 340 (396)
+.|+.++++
T Consensus 262 ---~~L~~l~~~ 270 (487)
T 3oja_A 262 ---QRVQTVAKQ 270 (487)
T ss_dssp ---HHHHHHHHH
T ss_pred ---CCCcEEecc
Confidence 788888886
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.4e-25 Score=204.56 Aligned_cols=132 Identities=30% Similarity=0.356 Sum_probs=80.3
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
+++++++++++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 5666777777777777763 344332 5677777777777766666677777777777777776633 22 25556666
Q ss_pred EEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCc
Q 044898 174 NVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 174 ~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (396)
+|++++|+++ .+|..+ ...++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~---------------------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLG---------------------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp EEECCSSCCS-SCCCCT---------------------TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred EEECCCCcCC-cCchhh---------------------ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 6666666555 323211 12245666666666666555566666666666666666666
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.7e-27 Score=231.62 Aligned_cols=289 Identities=17% Similarity=0.153 Sum_probs=221.9
Q ss_pred CEEEEEcCCCCCCCCCCc----eecCccccCCCCCCEEEccCCcCccccchhhc-----CCCCCcEEeccCCcCccc---
Q 044898 70 KVIALNLGDPRAGSPGLT----GRLDPAIGKLTSLAELSIVPGRVIGKLPQSLS-----QLKNLRFFAISRNFVSGE--- 137 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~----~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~--- 137 (396)
++++|++++ +.+. +.++..+.++++|++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 86 ~L~~L~L~~-----n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 86 KIQKLSLQN-----CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CCCEEECTT-----SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred ceeEEEccC-----CCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 699999995 4555 35688899999999999999999876554443 367899999999999864
Q ss_pred -cccccCCCCCCCEEEeecCcCCCCCCcccC-----CCcCCcEEEccCCccccc----CCchhh--ccCCEEEccCCcCc
Q 044898 138 -IPAALGQLRGLRTLDLSYNQLTGAIPQSIG-----TLPELSNVILCHNKLSGS----VPPFLS--HALTRLDLKHNDLS 205 (396)
Q Consensus 138 -~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~--~~L~~L~l~~n~l~ 205 (396)
++..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+. ++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 356677889999999999998754444443 366999999999999854 344444 78999999999987
Q ss_pred ccC-----CCC-CCCCCCcEEEcccCCCCcc----chhhhcCCCCCCEEeccCCcCcccCCccccC------cccCEEEc
Q 044898 206 GSL-----APD-SLPPSVQYLSLSWNRLSGP----VDRLLSRLDQLNYLDLSLNQFNGNIPGRIFT------FPITNLQL 269 (396)
Q Consensus 206 ~~~-----~~~-~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~------~~L~~L~l 269 (396)
+.. +.. ...++|++|++++|.++.. ++..+..+++|++|++++|.+++..+..+.. .+|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 532 111 1247999999999999865 5777888999999999999998655544433 38999999
Q ss_pred cCCcccCcCCC------CCCCCcCEEEccCCCCcccCCcC--------CcccceEEeecccccc----cCchhHHhcccC
Q 044898 270 QRNAFAGPVQP------PDQVTIPTVDLSHNMLSGQISPS--------FSTVQNLYLNNNRFTG----QVPGSFVDHLLD 331 (396)
Q Consensus 270 ~~n~l~~~~~~------~~~~~L~~L~ls~N~l~~~~~~~--------~~~L~~L~L~~N~l~~----~~~~~~~~~~~~ 331 (396)
++|.+++.... ..+++|++|++++|.+++..+.. .++|+.|++++|.+++ .+|..+..+
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--- 397 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN--- 397 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC---
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC---
Confidence 99999864211 14689999999999998654321 4589999999999996 778888887
Q ss_pred CcccEEEccCCcCCCCCCCCCC-----CCCccchhcccCc
Q 044898 332 ASIQILYLQHNFLTGIEINPTA-----EIPSSSSLCLQYN 366 (396)
Q Consensus 332 ~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N 366 (396)
++|++|++++|++++.+...+. ....|+.|.+.++
T Consensus 398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 9999999999999875322221 1234555555555
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.7e-24 Score=193.26 Aligned_cols=206 Identities=21% Similarity=0.281 Sum_probs=121.2
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEcc
Q 044898 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILC 178 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (396)
..+.++++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45566666666663 444332 456666666666665555566666666666666666664444445566666666666
Q ss_pred CCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCcc
Q 044898 179 HNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGR 258 (396)
Q Consensus 179 ~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 258 (396)
+|++++..+..+ ...++|++|++++|++++..+..|..+++|++|++++|.+++..+..
T Consensus 94 ~n~l~~~~~~~~---------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 94 DNKLQALPIGVF---------------------DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp SSCCCCCCTTTT---------------------TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCcCCcCCHhHc---------------------ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 665552211111 11245555555555555555555566666666666666655211111
Q ss_pred ccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCCcccceEEeecccccccCchhHHhcccCCcccEEE
Q 044898 259 IFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILY 338 (396)
Q Consensus 259 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~ 338 (396)
+. .+++|+.|++++|++++..+..|..+ ++|++|+
T Consensus 153 ~~------------------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ 187 (270)
T 2o6q_A 153 FD------------------------------------------KLTSLKELRLYNNQLKRVPEGAFDKL---TELKTLK 187 (270)
T ss_dssp TT------------------------------------------TCTTCCEEECCSSCCSCCCTTTTTTC---TTCCEEE
T ss_pred cc------------------------------------------CCcccceeEecCCcCcEeChhHhccC---CCcCEEE
Confidence 11 13345555555555554444455555 7788888
Q ss_pred ccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCC
Q 044898 339 LQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCP 377 (396)
Q Consensus 339 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~ 377 (396)
|++|+++.++...+..+++|+.|++++| ||.|+|.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N----~~~c~c~ 222 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN----PWDCTCN 222 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSS----CBCCSSS
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCC----CeeCCCc
Confidence 8888888777777777888888888888 7778886
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.5e-24 Score=196.43 Aligned_cols=202 Identities=22% Similarity=0.220 Sum_probs=130.4
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEc
Q 044898 98 TSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVIL 177 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 177 (396)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47889999999988877778888999999999999988777778888999999999999988777788888999999999
Q ss_pred cCCcccccCCchhh--ccCCEEEccCCcCccc-CCC-CCCCCCCcEEEcccCCCCccchhhhcCCCCCC----EEeccCC
Q 044898 178 CHNKLSGSVPPFLS--HALTRLDLKHNDLSGS-LAP-DSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLN----YLDLSLN 249 (396)
Q Consensus 178 ~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n 249 (396)
++|.+.+..+..+. ++|++|++++|.+.+. +|. ....++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99988854443333 4555555555555432 121 11124555555555555544444444444443 5555555
Q ss_pred cCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccC
Q 044898 250 QFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQV 321 (396)
Q Consensus 250 ~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~ 321 (396)
++++..+..+. ..+|+.|++++|.+++..+.. +++|+.|++++|.+++..
T Consensus 188 ~l~~~~~~~~~----------------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFK----------------------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSC----------------------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccC----------------------CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 55533232222 234555555555555443322 345666666666666443
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=4.7e-24 Score=190.41 Aligned_cols=189 Identities=22% Similarity=0.239 Sum_probs=157.1
Q ss_pred CCCCcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCcc
Q 044898 57 DPCNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSG 136 (396)
Q Consensus 57 ~~C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 136 (396)
+||.|.|+.|.. ..+++++++ +++. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++
T Consensus 3 ~Cp~~~gC~C~~-~~~~l~~~~-----~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 3 TCETVTGCTCNE-GKKEVDCQG-----KSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp -CHHHHSSEEEG-GGTEEECTT-----CCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCCCCCceEcCC-CCeEEecCC-----CCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc
Confidence 456899999953 345788884 3444 4665554 589999999999999988899999999999999999998
Q ss_pred ccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCC-CCC
Q 044898 137 EIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAP-DSL 213 (396)
Q Consensus 137 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~-~~~ 213 (396)
..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+. ++|+.|++++|.+.+..+. ...
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc
Confidence 8888899999999999999999988788899999999999999999955554443 7899999999988876663 223
Q ss_pred CCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCccc
Q 044898 214 PPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGN 254 (396)
Q Consensus 214 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 254 (396)
.++|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 47889999999998888887888888999999999988765
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=5.1e-24 Score=196.26 Aligned_cols=226 Identities=19% Similarity=0.157 Sum_probs=145.6
Q ss_pred CCCCCEEEccCCcCccccch---hhcCCCCCcEEeccCCcCcccccccc--CCCCCCCEEEeecCcCCCCCC----cccC
Q 044898 97 LTSLAELSIVPGRVIGKLPQ---SLSQLKNLRFFAISRNFVSGEIPAAL--GQLRGLRTLDLSYNQLTGAIP----QSIG 167 (396)
Q Consensus 97 l~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~ 167 (396)
...++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34567778877776543111 12234668888888888887777777 778888888888888876544 3445
Q ss_pred CCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcc---cCCCC--CCCCCCcEEEcccCCCCccch--h-hhcC
Q 044898 168 TLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSG---SLAPD--SLPPSVQYLSLSWNRLSGPVD--R-LLSR 237 (396)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~---~~~~~--~~~~~L~~L~L~~n~l~~~~~--~-~l~~ 237 (396)
.+++|++|++++|++.+..+..+. ++|++|++++|++.+ ..+.. ...++|++|++++|+++...+ . .++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 677888888888888755555554 677777777777654 21121 123667777777777753221 1 2456
Q ss_pred CCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCc-CCcccceEEeeccc
Q 044898 238 LDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISP-SFSTVQNLYLNNNR 316 (396)
Q Consensus 238 l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~L~~L~L~~N~ 316 (396)
+++|++|++++|++++..|..+... ..+++|++|++++|+|+. +|. .+++|+.|+|++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~------------------~~~~~L~~L~Ls~N~l~~-lp~~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRC------------------MWSSALNSLNLSFAGLEQ-VPKGLPAKLRVLDLSSNR 283 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSC------------------CCCTTCCCEECCSSCCCS-CCSCCCSCCSCEECCSCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhc------------------cCcCcCCEEECCCCCCCc-hhhhhcCCCCEEECCCCc
Confidence 6777777777777776555544331 012567777777777773 343 33577888888888
Q ss_pred ccccCchhHHhcccCCcccEEEccCCcCCC
Q 044898 317 FTGQVPGSFVDHLLDASIQILYLQHNFLTG 346 (396)
Q Consensus 317 l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~ 346 (396)
+++. |. +..+ ++|++|+|++|++++
T Consensus 284 l~~~-~~-~~~l---~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 284 LNRA-PQ-PDEL---PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSC-CC-TTSC---CCCSCEECSSTTTSC
T ss_pred CCCC-ch-hhhC---CCccEEECcCCCCCC
Confidence 8743 33 3444 788888888888775
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=8.8e-24 Score=190.95 Aligned_cols=205 Identities=24% Similarity=0.255 Sum_probs=110.3
Q ss_pred cCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcE
Q 044898 95 GKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSN 174 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 174 (396)
..+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3445555555555555432 2355555566666666555532 24555556666666666555544445555556666
Q ss_pred EEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCC-CCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcC
Q 044898 175 VILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPD-SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQF 251 (396)
Q Consensus 175 L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 251 (396)
|++++|++++..+..+. ++|++|++++|.+.+..+.. ...++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 66666555533333222 44444455444444333321 1225566666666666655555556666666666666666
Q ss_pred cccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcCCcccceEEeecccccccCchhHHhc
Q 044898 252 NGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQVPGSFVDH 328 (396)
Q Consensus 252 ~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~ 328 (396)
++..|..+. .+++|+.|++++|.+.+.. ++++.|+++.|.++|.+|.++..+
T Consensus 194 ~~~~~~~~~---------------------~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 194 KSVPDGVFD---------------------RLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp SCCCTTTTT---------------------TCTTCCEEECCSSCBCCCT----TTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CccCHHHHh---------------------CCcCCCEEEccCCCccccC----cHHHHHHHHHHhCCCcccCccccc
Confidence 643333332 3455666666666555432 346666677777777777665544
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=6.4e-25 Score=206.76 Aligned_cols=242 Identities=17% Similarity=0.182 Sum_probs=148.6
Q ss_pred CCCCceecCccccCCCCCCEEEccCCcCccccc----hhhcCCC-CCcEEeccCCcCccccccccCCC-----CCCCEEE
Q 044898 83 SPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLP----QSLSQLK-NLRFFAISRNFVSGEIPAALGQL-----RGLRTLD 152 (396)
Q Consensus 83 ~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~ 152 (396)
.++++|.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|++|+
T Consensus 7 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 7 LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred cccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 457777777766666678888888888887766 6777888 88888888888887766666654 8888888
Q ss_pred eecCcCCCCCCccc----CCC-cCCcEEEccCCcccccCCchhh-------ccCCEEEccCCcCcccCCCC------CCC
Q 044898 153 LSYNQLTGAIPQSI----GTL-PELSNVILCHNKLSGSVPPFLS-------HALTRLDLKHNDLSGSLAPD------SLP 214 (396)
Q Consensus 153 L~~n~l~~~~p~~~----~~l-~~L~~L~l~~n~l~~~~p~~~~-------~~L~~L~l~~n~l~~~~~~~------~~~ 214 (396)
+++|++++..+..+ ..+ ++|++|++++|++++..+..+. .+|++|++++|.+.+..... ...
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 88888876655533 334 7888888888888755544432 35666777766665322110 011
Q ss_pred CCCcEEEcccCCCCccchhh----hcCC-CCCCEEeccCCcCccc----CCccccCcccCEEEccCCcccCcCCCCCCCC
Q 044898 215 PSVQYLSLSWNRLSGPVDRL----LSRL-DQLNYLDLSLNQFNGN----IPGRIFTFPITNLQLQRNAFAGPVQPPDQVT 285 (396)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 285 (396)
++|++|++++|++++..+.. +..+ ++|++|++++|.+++. ++..+.. ..++
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~--------------------~~~~ 226 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--------------------IPNH 226 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH--------------------SCTT
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc--------------------CCCC
Confidence 35666666666665444432 2233 3666666666665532 2222211 1235
Q ss_pred cCEEEccCCCCcccCC-------cCCcccceEEeecccccccCchh-------HHhcccCCcccEEEccCCcCCCC
Q 044898 286 IPTVDLSHNMLSGQIS-------PSFSTVQNLYLNNNRFTGQVPGS-------FVDHLLDASIQILYLQHNFLTGI 347 (396)
Q Consensus 286 L~~L~ls~N~l~~~~~-------~~~~~L~~L~L~~N~l~~~~~~~-------~~~~~~~~~L~~L~L~~N~l~~~ 347 (396)
|++|++++|.+++..+ ..+++|+.|++++|.+.+..+.. +..+ ++|++||+++|++...
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l---~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI---QKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC---CEEEEECTTSCBCCGG
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC---CceEEEecCCCcCCCc
Confidence 6666666666654332 33456777777777655333322 2222 5677777777776654
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7.8e-25 Score=206.17 Aligned_cols=252 Identities=19% Similarity=0.170 Sum_probs=171.7
Q ss_pred EEEccCCcCccccchhhcCCCCCcEEeccCCcCccccc----cccCCCC-CCCEEEeecCcCCCCCCcccCCC-----cC
Q 044898 102 ELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIP----AALGQLR-GLRTLDLSYNQLTGAIPQSIGTL-----PE 171 (396)
Q Consensus 102 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~ 171 (396)
.+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999999888877777779999999999987666 6778888 89999999999987777766664 89
Q ss_pred CcEEEccCCcccccCCchhh-------ccCCEEEccCCcCcccCCCC-----CC-CCCCcEEEcccCCCCcc----chhh
Q 044898 172 LSNVILCHNKLSGSVPPFLS-------HALTRLDLKHNDLSGSLAPD-----SL-PPSVQYLSLSWNRLSGP----VDRL 234 (396)
Q Consensus 172 L~~L~l~~n~l~~~~p~~~~-------~~L~~L~l~~n~l~~~~~~~-----~~-~~~L~~L~L~~n~l~~~----~~~~ 234 (396)
|++|++++|++++..+..+. ++|+.|++++|.+.+..+.. .. .++|++|++++|.++.. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999866665443 35666666666665433210 00 13555555555555432 2222
Q ss_pred hcCCC-CCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCC-CCcCEEEccCCCCccc----CCcC----C
Q 044898 235 LSRLD-QLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQ-VTIPTVDLSHNMLSGQ----ISPS----F 304 (396)
Q Consensus 235 l~~l~-~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~ls~N~l~~~----~~~~----~ 304 (396)
+..++ +|++|++++|++++..+..+... .... ++|++|++++|.|++. ++.. .
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-----------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKF-----------------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHH-----------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHH-----------------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 33333 55555555555543333222110 0023 4788888888888763 2222 2
Q ss_pred cccceEEeecccccccCchhHHhccc-CCcccEEEccCCcCCCCCC-------CCCCCCCccchhcccCccCCC
Q 044898 305 STVQNLYLNNNRFTGQVPGSFVDHLL-DASIQILYLQHNFLTGIEI-------NPTAEIPSSSSLCLQYNCMVP 370 (396)
Q Consensus 305 ~~L~~L~L~~N~l~~~~~~~~~~~~~-~~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~ 370 (396)
++|+.|+|++|.+++..+..+..... .++|++|+|++|.+.++.. ..+..+++|+.+++++|.+.+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 47999999999999776655544311 3789999999999766543 356678999999999998864
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=8e-24 Score=194.96 Aligned_cols=200 Identities=19% Similarity=0.222 Sum_probs=157.2
Q ss_pred CCCCCCEEEccCCcCccccchhh--cCCCCCcEEeccCCcCccccc----cccCCCCCCCEEEeecCcCCCCCCcccCCC
Q 044898 96 KLTSLAELSIVPGRVIGKLPQSL--SQLKNLRFFAISRNFVSGEIP----AALGQLRGLRTLDLSYNQLTGAIPQSIGTL 169 (396)
Q Consensus 96 ~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 169 (396)
.+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34679999999999999999888 899999999999999997554 445679999999999999998888999999
Q ss_pred cCCcEEEccCCccccc--CCchh----hccCCEEEccCCcCcccCCC----CCCCCCCcEEEcccCCCCccchhhhcCC-
Q 044898 170 PELSNVILCHNKLSGS--VPPFL----SHALTRLDLKHNDLSGSLAP----DSLPPSVQYLSLSWNRLSGPVDRLLSRL- 238 (396)
Q Consensus 170 ~~L~~L~l~~n~l~~~--~p~~~----~~~L~~L~l~~n~l~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l- 238 (396)
++|++|++++|++.+. ++... .++|++|++++|.++..... ....++|++|++++|++++..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 9999999999998642 22111 27899999999999743221 1223899999999999998878777776
Q ss_pred --CCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCc
Q 044898 239 --DQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLS 297 (396)
Q Consensus 239 --~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~ 297 (396)
++|++|++++|+++ .+|..+. .+|++|++++|++++......+++|+.|++++|.++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 69999999999998 7777664 466677777766666333344556666666666554
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.5e-25 Score=207.28 Aligned_cols=258 Identities=17% Similarity=0.168 Sum_probs=184.9
Q ss_pred CcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCC--CCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccc
Q 044898 60 NFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKL--TSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGE 137 (396)
Q Consensus 60 ~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l--~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 137 (396)
.|.++.|+...++.+++++ +.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 38 ~W~~~~~~~~~~~~l~l~~-----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 38 RWYRLASDESLWQTLDLTG-----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp HHHHHHTCSTTSSEEECTT-----CBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHhcCchhheeecccc-----ccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 7999988876788999995 3333 4556666 8999999999999987665 66899999999999999866
Q ss_pred -cccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCC-ccccc-CCchhh--ccCCEEEccCC-cCccc-CCC
Q 044898 138 -IPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHN-KLSGS-VPPFLS--HALTRLDLKHN-DLSGS-LAP 210 (396)
Q Consensus 138 -~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~--~~L~~L~l~~n-~l~~~-~~~ 210 (396)
++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+. ++|++|++++| .+++. .+.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 8888999999999999999998888889999999999999999 67643 444343 78888888888 77643 121
Q ss_pred -CCCCC-CCcEEEcccC--CCC-ccchhhhcCCCCCCEEeccCCc-CcccCCccccCcccCEEEccCCcccCcCCCCCCC
Q 044898 211 -DSLPP-SVQYLSLSWN--RLS-GPVDRLLSRLDQLNYLDLSLNQ-FNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQV 284 (396)
Q Consensus 211 -~~~~~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 284 (396)
....+ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+.. ++
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---------------------l~ 247 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ---------------------LN 247 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG---------------------CT
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC---------------------CC
Confidence 12235 8888888888 455 4566677788888888888888 66555555544 34
Q ss_pred CcCEEEccCCC-Cccc---CCcCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCC
Q 044898 285 TIPTVDLSHNM-LSGQ---ISPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTA 353 (396)
Q Consensus 285 ~L~~L~ls~N~-l~~~---~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~ 353 (396)
+|++|++++|. +... ....+++|+.|++++| ++...-..+. .+++.|++++|++++..+..+.
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~-----~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK-----EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH-----HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH-----hhCcceEEecccCccccCCccc
Confidence 55555555553 2221 1123556777777777 4322222222 2366667888888887655443
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.9e-22 Score=182.57 Aligned_cols=181 Identities=28% Similarity=0.272 Sum_probs=146.3
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++++++++ ++++ .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+++..+ ...+++|
T Consensus 10 ~~l~~l~~~~-----~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 10 ASHLEVNCDK-----RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp TTCCEEECTT-----SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred CCccEEECCC-----CCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 5688889984 4554 4665554 689999999999999889999999999999999999996543 3789999
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCC-CCCCCcEEEcccC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDS-LPPSVQYLSLSWN 225 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n 225 (396)
++|++++|+++ .+|..+..+++|++|++++|++++..+..+. ++|+.|++++|.+.+..+... ..++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 7788899999999999999999965555554 678888888888886655422 2378888888888
Q ss_pred CCCccchhhhcCCCCCCEEeccCCcCcccCCccccC
Q 044898 226 RLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFT 261 (396)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 261 (396)
++++..+..|..+++|++|++++|+++ .+|..++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 888777777778888888888888887 66665544
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=6.8e-23 Score=181.47 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=135.5
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCcEEeccCCc-CccccccccCCCCCCCEEEeec-CcCCCCCCcccCCCcCCcEEE
Q 044898 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNF-VSGEIPAALGQLRGLRTLDLSY-NQLTGAIPQSIGTLPELSNVI 176 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ 176 (396)
+|++|++++|++++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 89999999999998877789999999999999997 8877677899999999999998 999977677899999999999
Q ss_pred ccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccC-CCCccchhhhcCCCCCC-EEeccCCcCc
Q 044898 177 LCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWN-RLSGPVDRLLSRLDQLN-YLDLSLNQFN 252 (396)
Q Consensus 177 l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~ 252 (396)
+++|++++ +|. +. ++|+ .|++|++++| .+++..+..|..+++|+ +|++++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCcc-ccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 99999884 553 21 2222 1236666666 66666566677777777 7777777776
Q ss_pred ccCCccccC-cccCEEEccCCc-ccCcCCC--CCC-CCcCEEEccCCCCcccCCcCCcccceEEeecc
Q 044898 253 GNIPGRIFT-FPITNLQLQRNA-FAGPVQP--PDQ-VTIPTVDLSHNMLSGQISPSFSTVQNLYLNNN 315 (396)
Q Consensus 253 ~~~p~~~~~-~~L~~L~l~~n~-l~~~~~~--~~~-~~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N 315 (396)
.+|...+. .+|++|++++|+ +++..+. ..+ ++|+.|++++|++++..+..+++|+.|+++++
T Consensus 170 -~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp -EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred -ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 55544333 255555555553 5433222 134 55666666666665444444555555555443
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.2e-24 Score=206.67 Aligned_cols=236 Identities=18% Similarity=0.173 Sum_probs=151.6
Q ss_pred ecCccccCCCCCCEEEccCCcCccccc----hhhcCCCCCcEEeccCC---cCcccccccc-------CCCCCCCEEEee
Q 044898 89 RLDPAIGKLTSLAELSIVPGRVIGKLP----QSLSQLKNLRFFAISRN---FVSGEIPAAL-------GQLRGLRTLDLS 154 (396)
Q Consensus 89 ~l~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 154 (396)
.++..+..+++|++|++++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456678888899999999998887644 34668899999999986 4445556544 788999999999
Q ss_pred cCcCCC----CCCcccCCCcCCcEEEccCCcccccCCchhh---------------ccCCEEEccCCcCc-ccCCC----
Q 044898 155 YNQLTG----AIPQSIGTLPELSNVILCHNKLSGSVPPFLS---------------HALTRLDLKHNDLS-GSLAP---- 210 (396)
Q Consensus 155 ~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~---------------~~L~~L~l~~n~l~-~~~~~---- 210 (396)
+|.++. .+|..+..+++|++|++++|.+++..+..+. ++|++|++++|.+. +..+.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999886 3677788889999999999988744443333 35666666666654 11110
Q ss_pred CCCCCCCcEEEcccCCCCc-----cchhhhcCCCCCCEEeccCCcCc----ccCCccccCcccCEEEccCCcccCcCCCC
Q 044898 211 DSLPPSVQYLSLSWNRLSG-----PVDRLLSRLDQLNYLDLSLNQFN----GNIPGRIFTFPITNLQLQRNAFAGPVQPP 281 (396)
Q Consensus 211 ~~~~~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~p~~~~~~~L~~L~l~~n~l~~~~~~~ 281 (396)
....++|+.|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--------------------- 241 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--------------------- 241 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG---------------------
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc---------------------
Confidence 0112456666666665551 22334555566666666666554 23333333
Q ss_pred CCCCcCEEEccCCCCccc----CCcC-----CcccceEEeecccccc----cCchhH-HhcccCCcccEEEccCCcCCCC
Q 044898 282 DQVTIPTVDLSHNMLSGQ----ISPS-----FSTVQNLYLNNNRFTG----QVPGSF-VDHLLDASIQILYLQHNFLTGI 347 (396)
Q Consensus 282 ~~~~L~~L~ls~N~l~~~----~~~~-----~~~L~~L~L~~N~l~~----~~~~~~-~~~~~~~~L~~L~L~~N~l~~~ 347 (396)
.+++|++|++++|.+++. ++.. +++|+.|+|++|.+++ .+|..+ ..+ ++|++|++++|++++.
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l---~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM---PDLLFLELNGNRFSEE 318 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC---TTCCEEECTTSBSCTT
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC---CCceEEEccCCcCCcc
Confidence 345666666666666543 2222 4567777777777775 366655 334 6777777777777765
Q ss_pred C
Q 044898 348 E 348 (396)
Q Consensus 348 ~ 348 (396)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 3
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.7e-22 Score=178.96 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=154.3
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCc-CccccchhhcCCCCCcEEeccC-CcCccccccccCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGR-VIGKLPQSLSQLKNLRFFAISR-NFVSGEIPAALGQLR 146 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~ 146 (396)
..++.|+++ .+.+++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.+++
T Consensus 31 ~~l~~L~l~-----~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLI-----ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TTCCEEEEE-----SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CcccEEEEe-----CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 478999999 467777777789999999999999997 8877777899999999999999 999977778899999
Q ss_pred CCCEEEeecCcCCCCCCcccCCCcCCc---EEEccCC-cccccCCchhh--ccCC-EEEccCCcCcccCCCCCCCCCCcE
Q 044898 147 GLRTLDLSYNQLTGAIPQSIGTLPELS---NVILCHN-KLSGSVPPFLS--HALT-RLDLKHNDLSGSLAPDSLPPSVQY 219 (396)
Q Consensus 147 ~L~~L~L~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~--~~L~-~L~l~~n~l~~~~~~~~~~~~L~~ 219 (396)
+|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..+. ++|+ .|++++|.+....+.....++|+.
T Consensus 106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA 183 (239)
T ss_dssp TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEE
T ss_pred CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCE
Confidence 99999999999995 666 88899998 9999999 88855444454 7888 999999988844443233368888
Q ss_pred EEcccCC-CCccchhhhcCC-CCCCEEeccCCcCcccCCccccCcccCEEEccC
Q 044898 220 LSLSWNR-LSGPVDRLLSRL-DQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQR 271 (396)
Q Consensus 220 L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~ 271 (396)
|++++|+ +++..+..|..+ ++|++|++++|+++ .+|.. .-.+++.|++++
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARN 235 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTT
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccC
Confidence 8888884 887777788888 88888888888887 44443 111444444443
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.3e-22 Score=183.29 Aligned_cols=179 Identities=22% Similarity=0.288 Sum_probs=154.5
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++.|+++++ .+. .+ +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 41 ~~L~~L~l~~~-----~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNS-----DIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTS-----CCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cceeeeeeCCC-----Ccc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 57899999953 333 22 3588999999999999999873 478999999999999999998888889999999
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCC-CCCCCCcEEEcccC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPD-SLPPSVQYLSLSWN 225 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n 225 (396)
++|++++|++++..+..+..+++|++|++++|++++..+..+. ++|+.|++++|.+++..+.. ...++|+.|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 9999999999988788899999999999999999966555554 89999999999999776653 23489999999999
Q ss_pred CCCccchhhhcCCCCCCEEeccCCcCcccCC
Q 044898 226 RLSGPVDRLLSRLDQLNYLDLSLNQFNGNIP 256 (396)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 256 (396)
++++..+..+..+++|++|++++|++.+..|
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 9999988889999999999999999875433
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=3.8e-23 Score=204.13 Aligned_cols=211 Identities=24% Similarity=0.355 Sum_probs=135.9
Q ss_pred CCCCCCCCCC-----Cccee-EeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCC
Q 044898 50 ASWDFTSDPC-----NFAGV-YCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKN 123 (396)
Q Consensus 50 ~~W~~~~~~C-----~w~gv-~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 123 (396)
.+|..+.++| .|.|+ .|...+++.|++++ +++++ +|..+. ++|++|++++|.++ .+| ..+++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~-----n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLINQFSELQLNR-----LNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHTTCSEEECCS-----SCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHhccCCccccccchhhhccccccCCccEEEeCC-----CCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCC
Confidence 3465556778 69999 78777899999994 45655 666553 68888999888888 456 45688
Q ss_pred CcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCc
Q 044898 124 LRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHND 203 (396)
Q Consensus 124 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~ 203 (396)
|++|++++|.+++ +|. +.+ +|++|++++|++++ +|. .+++|++|++++|.+++ +|. .
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-~------------- 158 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-L------------- 158 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C-------------
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-c-------------
Confidence 8888888888885 565 554 78888888888875 554 56777777777777763 443 2
Q ss_pred CcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCC
Q 044898 204 LSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQ 283 (396)
Q Consensus 204 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~ 283 (396)
.++|+.|++++|++++ +|. +. ++|++|++++|+|+ .+|. +.. +| ....
T Consensus 159 ----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~L---------------~~~~ 206 (571)
T 3cvr_A 159 ----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-RN---------------HHSE 206 (571)
T ss_dssp ----------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------------------
T ss_pred ----------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-hh---------------hccc
Confidence 2455555555555554 333 33 56666666666666 4554 221 11 0011
Q ss_pred CCcCEEEccCCCCcccCCc---CCcccceEEeecccccccCchhHHhc
Q 044898 284 VTIPTVDLSHNMLSGQISP---SFSTVQNLYLNNNRFTGQVPGSFVDH 328 (396)
Q Consensus 284 ~~L~~L~ls~N~l~~~~~~---~~~~L~~L~L~~N~l~~~~~~~~~~~ 328 (396)
+.|+.|++++|.|+. +|. .+++|+.|+|++|.+++.+|..+..+
T Consensus 207 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 207 ETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 223555555555553 333 24567788888888888888777765
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.1e-22 Score=176.23 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=99.0
Q ss_pred CCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCC-CCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCC
Q 044898 171 ELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPD-SLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLN 249 (396)
Q Consensus 171 ~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 249 (396)
..++++++++.++ .+|..+.+.++.|++++|.+.+..+.. ...++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCcc-ccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3455666666665 555554455555555555555444431 11255555555555555555555555555555555555
Q ss_pred cCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHH
Q 044898 250 QFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFV 326 (396)
Q Consensus 250 ~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~ 326 (396)
++++..+..+. .+++|++|++++|.|++..+.. +++|+.|+|++|++++..+..|.
T Consensus 94 ~l~~~~~~~~~---------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 94 QLASLPLGVFD---------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp CCCCCCTTTTT---------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccChhHhc---------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 55533333332 3455666666666665444332 34566666666666644444555
Q ss_pred hcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCC-CCCC
Q 044898 327 DHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQ-CPLR 379 (396)
Q Consensus 327 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~-c~~~ 379 (396)
.+ ++|++|+|++|+++++++..+..+++|+.|++++| +|.|+ |.+.
T Consensus 153 ~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N----~~~c~~~~~~ 199 (251)
T 3m19_A 153 KL---TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN----QFDCSRCEIL 199 (251)
T ss_dssp TC---TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC----CBCTTSTTHH
T ss_pred cC---cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC----ceeCCccccH
Confidence 55 66666666666666665556666666666666666 44455 4443
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=7.4e-22 Score=184.92 Aligned_cols=236 Identities=15% Similarity=0.140 Sum_probs=160.0
Q ss_pred CCcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCcccc
Q 044898 59 CNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEI 138 (396)
Q Consensus 59 C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 138 (396)
|.|..|.|... +++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.+
T Consensus 9 C~~~~v~C~~~---------------~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i 70 (350)
T 4ay9_X 9 CSNRVFLCQES---------------KVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70 (350)
T ss_dssp EETTEEEEEST---------------TCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEE
T ss_pred eeCCEEEecCC---------------CCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCcc
Confidence 46777777633 333 355544 258999999999999766678999999999999999987655
Q ss_pred c-cccCCCCCCCE-EEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccC-CcCcccCCCCCC
Q 044898 139 P-AALGQLRGLRT-LDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKH-NDLSGSLAPDSL 213 (396)
Q Consensus 139 p-~~l~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~-n~l~~~~~~~~~ 213 (396)
| ..|.++++|++ +.++.|+++...|..|..+++|++|++++|++....+..+. .++..+++.+ +.+....+....
T Consensus 71 ~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~ 150 (350)
T 4ay9_X 71 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150 (350)
T ss_dssp CTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST
T ss_pred ChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh
Confidence 5 46889998876 56677999977788999999999999999999854444443 4566777765 445433332111
Q ss_pred --CCCCcEEEcccCCCCccchhhhcCCCCCCEEeccC-CcCcccCCccc-cCc-ccCEEEccCCcccCcCCCCCCCCcCE
Q 044898 214 --PPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSL-NQFNGNIPGRI-FTF-PITNLQLQRNAFAGPVQPPDQVTIPT 288 (396)
Q Consensus 214 --~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~-~~~-~L~~L~l~~n~l~~~~~~~~~~~L~~ 288 (396)
...++.|++++|+++.+.+..| ...+|++|++++ |.++ .+|... ... +|++|++++|+++.. |...+.+|+.
T Consensus 151 ~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~l-p~~~~~~L~~ 227 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSL-PSYGLENLKK 227 (350)
T ss_dssp TSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCC-CSSSCTTCCE
T ss_pred hcchhhhhhccccccccCCChhhc-cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCcc-ChhhhccchH
Confidence 1467788888888875544444 456788888765 4554 666543 333 677777777777653 3344666677
Q ss_pred EEccCCCCcccCC--cCCcccceEEeecc
Q 044898 289 VDLSHNMLSGQIS--PSFSTVQNLYLNNN 315 (396)
Q Consensus 289 L~ls~N~l~~~~~--~~~~~L~~L~L~~N 315 (396)
|.+.++.--..+| ..+++|+.+++.++
T Consensus 228 L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 228 LRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp EECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 7665554333444 24556666666544
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.2e-21 Score=180.10 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=38.7
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|++|++++|++++. + .+..+++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCC
Confidence 4444555555555554443322 44455555555555544422 1 344445555555555544432 2 144444444
Q ss_pred EEEccCCccc
Q 044898 174 NVILCHNKLS 183 (396)
Q Consensus 174 ~L~l~~n~l~ 183 (396)
+|++++|+++
T Consensus 133 ~L~l~~n~l~ 142 (308)
T 1h6u_A 133 VLYLDLNQIT 142 (308)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCccC
Confidence 4444444444
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=8.6e-22 Score=170.53 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=135.6
Q ss_pred CCCcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccc
Q 044898 58 PCNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGE 137 (396)
Q Consensus 58 ~C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 137 (396)
.|.|.++.|....++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++.
T Consensus 6 ~C~~~~v~c~~~~l~----------------~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 6 SCSGTTVECYSQGRT----------------SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp EEETTEEECCSSCCS----------------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred EECCCEEEecCCCcc----------------CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 368999999743222 223222 34788888888888877677778888888888888888866
Q ss_pred cccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCC-CCC
Q 044898 138 IPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPD-SLP 214 (396)
Q Consensus 138 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~-~~~ 214 (396)
.+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+. ++|+.|++++|.+++..+.. ...
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 666678888888888888888866666678888888888888888855454444 78888888888888665542 223
Q ss_pred CCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc
Q 044898 215 PSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF 262 (396)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 262 (396)
++|+.|++++|.+.+ .+++|++|+++.|+++|.+|..++..
T Consensus 148 ~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 148 TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 788999998887653 45678888889999998888877664
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.8e-23 Score=198.62 Aligned_cols=247 Identities=19% Similarity=0.207 Sum_probs=181.9
Q ss_pred CCEEEEEcCCCCCCCCCCcee----cCccccCCCCCCEEEccCC---cCccccchhh-------cCCCCCcEEeccCCcC
Q 044898 69 DKVIALNLGDPRAGSPGLTGR----LDPAIGKLTSLAELSIVPG---RVIGKLPQSL-------SQLKNLRFFAISRNFV 134 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~----l~~~~~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~L~~n~l 134 (396)
.+++.|+|++ +.+.+. ++..+.++++|++|++++| .+++.+|..+ ..+++|++|+|++|.+
T Consensus 32 ~~L~~L~L~~-----n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 32 DSVKEIVLSG-----NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp SCCCEEECTT-----SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred CCccEEECCC-----CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4799999995 455554 3445778999999999996 4555566655 7899999999999999
Q ss_pred cc----ccccccCCCCCCCEEEeecCcCCCCCCcc----cCCC---------cCCcEEEccCCccc-ccCCc---hhh--
Q 044898 135 SG----EIPAALGQLRGLRTLDLSYNQLTGAIPQS----IGTL---------PELSNVILCHNKLS-GSVPP---FLS-- 191 (396)
Q Consensus 135 ~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l---------~~L~~L~l~~n~l~-~~~p~---~~~-- 191 (396)
++ .+|..+..+++|++|++++|.++...+.. +..+ ++|++|++++|+++ +.++. .+.
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 97 47788899999999999999997443333 3334 89999999999998 33442 332
Q ss_pred ccCCEEEccCCcCcc-----cCC-CCCCCCCCcEEEcccCCCC----ccchhhhcCCCCCCEEeccCCcCccc----CCc
Q 044898 192 HALTRLDLKHNDLSG-----SLA-PDSLPPSVQYLSLSWNRLS----GPVDRLLSRLDQLNYLDLSLNQFNGN----IPG 257 (396)
Q Consensus 192 ~~L~~L~l~~n~l~~-----~~~-~~~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~----~p~ 257 (396)
++|+.|++++|.+.. ..+ .....++|+.|++++|.++ ..+|..+..+++|++|++++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 689999999999972 233 3234489999999999996 67788899999999999999999865 333
Q ss_pred cccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcc----cCCcC----CcccceEEeecccccccCc--hhHHh
Q 044898 258 RIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSG----QISPS----FSTVQNLYLNNNRFTGQVP--GSFVD 327 (396)
Q Consensus 258 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~----~~~~~----~~~L~~L~L~~N~l~~~~~--~~~~~ 327 (396)
.+.. ..+++|++|++++|.+++ .+|.. +++|+.|++++|.+++..+ ..+..
T Consensus 267 ~l~~-------------------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 267 AFSK-------------------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp HHHT-------------------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred HHhh-------------------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 3211 124567777777777776 34432 4678888888888886664 44444
Q ss_pred cccCCcccEEEccC
Q 044898 328 HLLDASIQILYLQH 341 (396)
Q Consensus 328 ~~~~~~L~~L~L~~ 341 (396)
.+ ++++.+++..
T Consensus 328 ~l--~~~~~~~l~~ 339 (386)
T 2ca6_A 328 VF--STRGRGELDE 339 (386)
T ss_dssp HH--HHHTCCEECC
T ss_pred Hh--hhcCcchhhh
Confidence 32 5555555543
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=3.5e-22 Score=197.26 Aligned_cols=217 Identities=19% Similarity=0.269 Sum_probs=133.1
Q ss_pred CCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCC
Q 044898 123 NLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHN 202 (396)
Q Consensus 123 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n 202 (396)
+|++|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +..+|+.|++++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence 67777777777764 55544 266777777777776 455 345677777777777764 555 4446666666666
Q ss_pred cCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCC
Q 044898 203 DLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPD 282 (396)
Q Consensus 203 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~ 282 (396)
.+++ +|. ..++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +.
T Consensus 131 ~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~---------------------- 179 (571)
T 3cvr_A 131 QLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP---------------------- 179 (571)
T ss_dssp CCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC----------------------
T ss_pred cCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh----------------------
Confidence 6665 332 34666666666666665 333 45666666666666663 444 22
Q ss_pred CCCcCEEEccCCCCcccCCcCCccc-------ceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCC
Q 044898 283 QVTIPTVDLSHNMLSGQISPSFSTV-------QNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEI 355 (396)
Q Consensus 283 ~~~L~~L~ls~N~l~~~~~~~~~~L-------~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 355 (396)
++|+.|++++|.|+ .+|....+| +.|+|++|+|+ .+|..+..+ ++|+.|+|++|.+++..+..+..+
T Consensus 180 -~~L~~L~Ls~N~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l---~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL---DPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -TTCCEEECCSSCCS-SCCCCC--------CCEEEECCSSCCC-CCCGGGGGS---CTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -CCCCEEECcCCCCC-chhhHHHhhhcccccceEEecCCCcce-ecCHHHhcC---CCCCEEEeeCCcCCCcCHHHHHHh
Confidence 45666666666666 333322256 99999999999 789888887 999999999999987655444332
Q ss_pred Cc-------cchhcccCccCC--CCCCCCCCCCCCCCCC
Q 044898 356 PS-------SSSLCLQYNCMV--PPVQMQCPLRSGKQKT 385 (396)
Q Consensus 356 ~~-------L~~L~l~~N~l~--~~~~c~c~~~~~~~~~ 385 (396)
+. ...++++++.+. ++..|+|...|.....
T Consensus 254 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~Wl~~~~ 292 (571)
T 3cvr_A 254 TAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292 (571)
T ss_dssp HHSCC---CEEECCC----------CCSHHHHTTCC---
T ss_pred hcCccccCCeeEEeecccccccccccchhhHHHHhhhhc
Confidence 11 123445554322 2348999999976544
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.3e-21 Score=177.18 Aligned_cols=148 Identities=24% Similarity=0.314 Sum_probs=88.9
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. +.+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4456777888888877765 33 57777888888888887775433 77778888888888877743 3577777777
Q ss_pred EEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcC
Q 044898 174 NVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQF 251 (396)
Q Consensus 174 ~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 251 (396)
+|++++|++++ ++. +. ++|+.|++++|.+.+..+ ....++|+.|++++|++++..+ +..+++|++|++++|++
T Consensus 111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 77777777764 232 22 455555555555543322 1222444555555554443322 44444445555444444
Q ss_pred c
Q 044898 252 N 252 (396)
Q Consensus 252 ~ 252 (396)
+
T Consensus 186 ~ 186 (308)
T 1h6u_A 186 S 186 (308)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=8.4e-23 Score=190.10 Aligned_cols=242 Identities=16% Similarity=0.187 Sum_probs=165.0
Q ss_pred CCCEEEccCCcCccccchhhcCC--CCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCC-CCcccCCCcCCcEE
Q 044898 99 SLAELSIVPGRVIGKLPQSLSQL--KNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGA-IPQSIGTLPELSNV 175 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L 175 (396)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4788999988876 4566666 8899999999998866555 56789999999999988755 77788888999999
Q ss_pred EccCCcccccCCchhh--ccCCEEEccCC-cCccc-CCC-CCCCCCCcEEEcccC-CCCcc-chhhhcCCC-CCCEEecc
Q 044898 176 ILCHNKLSGSVPPFLS--HALTRLDLKHN-DLSGS-LAP-DSLPPSVQYLSLSWN-RLSGP-VDRLLSRLD-QLNYLDLS 247 (396)
Q Consensus 176 ~l~~n~l~~~~p~~~~--~~L~~L~l~~n-~l~~~-~~~-~~~~~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~l~ 247 (396)
++++|.+++..+..+. ++|++|++++| .+++. .+. ....++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 9999988766665554 66777777776 45431 111 112256666666666 66543 455566666 66666666
Q ss_pred CC--cCc-ccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCC-CcccCCc---CCcccceEEeeccc-ccc
Q 044898 248 LN--QFN-GNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNM-LSGQISP---SFSTVQNLYLNNNR-FTG 319 (396)
Q Consensus 248 ~n--~l~-~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~-l~~~~~~---~~~~L~~L~L~~N~-l~~ 319 (396)
+| .++ +.+|..+. .+++|++|++++|. +++..+. .+++|+.|++++|. ++.
T Consensus 204 ~~~~~~~~~~l~~~~~---------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVR---------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp SCGGGSCHHHHHHHHH---------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred CCcccCCHHHHHHHHh---------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 66 333 12222221 36678888888888 6655444 34689999999995 332
Q ss_pred cCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCC-CccchhcccCccCCCCC
Q 044898 320 QVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEI-PSSSSLCLQYNCMVPPV 372 (396)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~ 372 (396)
.....+..+ ++|++|++++| ++ ...+..+ ..+..|++++|.+++..
T Consensus 263 ~~~~~l~~~---~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 263 ETLLELGEI---PTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGGGGGGGC---TTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred HHHHHHhcC---CCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCcccc
Confidence 222356665 99999999999 43 3344444 34777889999888544
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.4e-20 Score=162.23 Aligned_cols=166 Identities=22% Similarity=0.238 Sum_probs=130.5
Q ss_pred CCCCCCCCCCcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEecc
Q 044898 51 SWDFTSDPCNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAIS 130 (396)
Q Consensus 51 ~W~~~~~~C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 130 (396)
.|..+...|.|.+|.|...+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~l~----------------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKRHA----------------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72 (229)
T ss_dssp CCCCTTCEEETTEEECTTSCCS----------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ccCCCCCEEeCCEeEccCCCcC----------------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECC
Confidence 3444678999999999843322 3444333 789999999999999889999999999999999
Q ss_pred CCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCC
Q 044898 131 RNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAP 210 (396)
Q Consensus 131 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~ 210 (396)
+|.++...+..|..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|..+.
T Consensus 73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~------------------- 132 (229)
T 3e6j_A 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE------------------- 132 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-------------------
T ss_pred CCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-------------------
Confidence 99998666677899999999999999999777777899999999999999988 5565432
Q ss_pred CCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCC
Q 044898 211 DSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIP 256 (396)
Q Consensus 211 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 256 (396)
..++|+.|++++|++++..+..|..+++|++|++++|++.+..+
T Consensus 133 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 133 --RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp --GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred --cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 12456666666666666666667778888888888888875443
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.6e-20 Score=163.99 Aligned_cols=158 Identities=21% Similarity=0.248 Sum_probs=117.5
Q ss_pred CEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcc
Q 044898 195 TRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAF 274 (396)
Q Consensus 195 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l 274 (396)
+.++++++.+... |. ...++++.|++++|++++..+..|..+++|++|++++|++++..|..+..
T Consensus 14 ~~v~c~~~~l~~i-P~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------- 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------- 78 (220)
T ss_dssp TEEECTTSCCSSC-CS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-------------
T ss_pred CEEEcCCCCcCcC-CC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-------------
Confidence 4556666655532 32 33467777777777777766667777788888888888777555555543
Q ss_pred cCcCCCCCCCCcCEEEccCCCCcccCCc---CCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCC
Q 044898 275 AGPVQPPDQVTIPTVDLSHNMLSGQISP---SFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINP 351 (396)
Q Consensus 275 ~~~~~~~~~~~L~~L~ls~N~l~~~~~~---~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~ 351 (396)
+++|++|++++|.|+...+. .+++|+.|+|++|++++..|..|..+ ++|++|+|++|+|++++...
T Consensus 79 --------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 79 --------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL---HNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp --------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCSCCCTTT
T ss_pred --------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC---CCCCEEECCCCcCCEECHHH
Confidence 45556666666666544332 34578888888888887778888887 89999999999999998888
Q ss_pred CCCCCccchhcccCccCCCCCCCCCCCCCCC
Q 044898 352 TAEIPSSSSLCLQYNCMVPPVQMQCPLRSGK 382 (396)
Q Consensus 352 ~~~l~~L~~L~l~~N~l~~~~~c~c~~~~~~ 382 (396)
|..+++|+.+++++| +|.|+|.+.|..
T Consensus 148 ~~~l~~L~~L~L~~N----~~~c~c~l~~l~ 174 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQN----PFICDCHLKWLA 174 (220)
T ss_dssp TTTCTTCCEEECCSS----CEECSGGGHHHH
T ss_pred HhCCCCCCEEEeCCC----CcCCCCccHHHH
Confidence 999999999999999 888999998854
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.4e-21 Score=179.02 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=164.3
Q ss_pred CEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCC-cccCCCcCCcE-EEcc
Q 044898 101 AELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIP-QSIGTLPELSN-VILC 178 (396)
Q Consensus 101 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~l~ 178 (396)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| .+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888888 467655 3689999999999996666689999999999999999876555 46888988775 6667
Q ss_pred CCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCC-CCCcEEEccc-CCCCccchhhhcCCC-CCCEEeccCCcCcc
Q 044898 179 HNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLP-PSVQYLSLSW-NRLSGPVDRLLSRLD-QLNYLDLSLNQFNG 253 (396)
Q Consensus 179 ~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~ 253 (396)
.|+++...|..+. ++|++|++++|.+....+..... .++..+++.+ +++....+..|..+. .+++|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 7899866566665 78999999999988665542222 5667787755 567766666676664 5888999999998
Q ss_pred cCCccccC-cccCEEEccC-CcccCcCCC--CCCCCcCEEEccCCCCcccCCcCCcccceEEeecccccccCchhHHhcc
Q 044898 254 NIPGRIFT-FPITNLQLQR-NAFAGPVQP--PDQVTIPTVDLSHNMLSGQISPSFSTVQNLYLNNNRFTGQVPGSFVDHL 329 (396)
Q Consensus 254 ~~p~~~~~-~~L~~L~l~~-n~l~~~~~~--~~~~~L~~L~ls~N~l~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~ 329 (396)
.+|...+. .+++++++++ |.++...+. ..+++|++||+++|+|+...+..+.+|+.|.+.++.--..+| .+..+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l- 245 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP-TLEKL- 245 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCC-CTTTC-
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCC-CchhC-
Confidence 45554444 4788888765 444443322 256677777777777776555566667766655543333555 24444
Q ss_pred cCCcccEEEccCC
Q 044898 330 LDASIQILYLQHN 342 (396)
Q Consensus 330 ~~~~L~~L~L~~N 342 (396)
++|+.+++.++
T Consensus 246 --~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 --VALMEASLTYP 256 (350)
T ss_dssp --CSCCEEECSCH
T ss_pred --cChhhCcCCCC
Confidence 66777776654
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=7.4e-21 Score=178.83 Aligned_cols=179 Identities=24% Similarity=0.275 Sum_probs=114.8
Q ss_pred cEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCC--CCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCc
Q 044898 173 SNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDS--LPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250 (396)
Q Consensus 173 ~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 250 (396)
+.++++++.++ .+|..+...++.|++++|.+++..+... ..++|+.|++++|++++..+..|..+++|++|+|++|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcC-ccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 34555555555 4444444445555555555554444322 23566666666666666666666666666666666666
Q ss_pred CcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhH--
Q 044898 251 FNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSF-- 325 (396)
Q Consensus 251 l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~-- 325 (396)
+++..+..+. .+++|++|++++|.|++..+.. +++|+.|+|++|+|++..+..|
T Consensus 100 l~~~~~~~~~---------------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 158 (361)
T 2xot_A 100 LHTLDEFLFS---------------------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158 (361)
T ss_dssp CCEECTTTTT---------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-
T ss_pred CCcCCHHHhC---------------------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC
Confidence 6633332232 3566777777777776655543 3567788888888884333334
Q ss_pred -HhcccCCcccEEEccCCcCCCCCCCCCCCCCc--cchhcccCccCCCCCCCCCCCCC
Q 044898 326 -VDHLLDASIQILYLQHNFLTGIEINPTAEIPS--SSSLCLQYNCMVPPVQMQCPLRS 380 (396)
Q Consensus 326 -~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~c~c~~~~ 380 (396)
..+ ++|++|+|++|+|+.++...+..++. ++.|++++| ||.|+|.+.|
T Consensus 159 ~~~l---~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N----~~~C~C~l~~ 209 (361)
T 2xot_A 159 GNKL---PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN----PLECDCKLYQ 209 (361)
T ss_dssp ---C---TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS----CEECCHHHHH
T ss_pred cccC---CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC----CccCCcCcHH
Confidence 345 89999999999999987777777777 488999999 8889998765
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.7e-20 Score=159.01 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=86.2
Q ss_pred CEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCC
Q 044898 101 AELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHN 180 (396)
Q Consensus 101 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 180 (396)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456677776664 34333 457888888888888666666788888888888888888666666778888888888888
Q ss_pred cccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcc
Q 044898 181 KLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNG 253 (396)
Q Consensus 181 ~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 253 (396)
++++..+..+. ..++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 87 ~l~~~~~~~~~---------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 87 QLQSLPNGVFD---------------------KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCCCCCTTTTT---------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCccCHhHhc---------------------CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 87733332222 12455555555555555555556666666666666666663
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=162.30 Aligned_cols=157 Identities=22% Similarity=0.275 Sum_probs=99.9
Q ss_pred EEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccch-hhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcc
Q 044898 196 RLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVD-RLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAF 274 (396)
Q Consensus 196 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l 274 (396)
.+++++|.+.. +|. ...+.++.|++++|++++..+ ..|..+++|++|++++|++++..+..+..
T Consensus 15 ~l~~s~n~l~~-iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~------------- 79 (220)
T 2v70_A 15 TVDCSNQKLNK-IPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG------------- 79 (220)
T ss_dssp EEECCSSCCSS-CCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-------------
T ss_pred EeEeCCCCccc-Ccc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-------------
Confidence 44455544443 222 233445556666666555433 34566666666666666666433333332
Q ss_pred cCcCCCCCCCCcCEEEccCCCCcccCCc---CCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCC
Q 044898 275 AGPVQPPDQVTIPTVDLSHNMLSGQISP---SFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINP 351 (396)
Q Consensus 275 ~~~~~~~~~~~L~~L~ls~N~l~~~~~~---~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~ 351 (396)
+++|++|++++|.+++..+. .+++|++|+|++|++++..|..|..+ ++|++|+|++|+|+++.+..
T Consensus 80 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 80 --------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL---SSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp --------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC---TTCSEEECTTSCCCCBCTTT
T ss_pred --------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC---ccCCEEECCCCcCCEECHHH
Confidence 34444555555555444333 23466777777777776667777777 88999999999999988888
Q ss_pred CCCCCccchhcccCccCCCCCCCCCCCCCCC
Q 044898 352 TAEIPSSSSLCLQYNCMVPPVQMQCPLRSGK 382 (396)
Q Consensus 352 ~~~l~~L~~L~l~~N~l~~~~~c~c~~~~~~ 382 (396)
|..+++|+.|++++| +|.|+|++.|..
T Consensus 149 ~~~l~~L~~L~L~~N----~l~c~c~l~~l~ 175 (220)
T 2v70_A 149 FDTLHSLSTLNLLAN----PFNCNCYLAWLG 175 (220)
T ss_dssp TTTCTTCCEEECCSC----CEECSGGGHHHH
T ss_pred hcCCCCCCEEEecCc----CCcCCCchHHHH
Confidence 888999999999999 777999887743
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=8.5e-22 Score=197.34 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCCCCCCCCcee----cCccccCCCCCCEEEccCCcCcc----ccchhhcCCCCCcEEeccCCcCcccccc
Q 044898 69 DKVIALNLGDPRAGSPGLTGR----LDPAIGKLTSLAELSIVPGRVIG----KLPQSLSQLKNLRFFAISRNFVSGEIPA 140 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~----l~~~~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 140 (396)
.++++|+|+++ .+.+. ++..+.++++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|.
T Consensus 164 ~~L~~L~L~~~-----~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~ 237 (592)
T 3ogk_B 164 RKIKTLLMEES-----SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG 237 (592)
T ss_dssp TTCSEEECTTC-----EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH
T ss_pred CCCCEEECccc-----cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH
Confidence 46778888743 33332 33344566777777777777762 344445567777777777776653 445
Q ss_pred ccCCCCCCCEEEee
Q 044898 141 ALGQLRGLRTLDLS 154 (396)
Q Consensus 141 ~l~~l~~L~~L~L~ 154 (396)
.+..+++|++|+++
T Consensus 238 ~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 238 FFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHCTTCCEEEEC
T ss_pred HHhhhhHHHhhccc
Confidence 55555555555554
No 102
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.4e-21 Score=195.78 Aligned_cols=294 Identities=12% Similarity=0.059 Sum_probs=176.7
Q ss_pred CEEEEEcCCCCCCCCCCce-ecCccccCCCCCCEEEccCCcCccc----cchhhcCCCCCcEEeccCCcCc----ccccc
Q 044898 70 KVIALNLGDPRAGSPGLTG-RLDPAIGKLTSLAELSIVPGRVIGK----LPQSLSQLKNLRFFAISRNFVS----GEIPA 140 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~-~l~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~ 140 (396)
++++|+|+++ .++.. .++....++++|++|++++|.+++. ++..+.++++|++|++++|.++ +.++.
T Consensus 139 ~L~~L~L~~~----~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 214 (592)
T 3ogk_B 139 DLETLKLDKC----SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592)
T ss_dssp GCCEEEEESC----EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred cCcEEECcCC----CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence 3889998842 11211 1233345788999999999988766 4455677889999999999886 34555
Q ss_pred ccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcc--------------------------cccCCchhh--c
Q 044898 141 ALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKL--------------------------SGSVPPFLS--H 192 (396)
Q Consensus 141 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l--------------------------~~~~p~~~~--~ 192 (396)
.+..+++|++|++++|.+.+ +|..+..+++|++|+++.... .+.+|..+. +
T Consensus 215 ~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293 (592)
T ss_dssp HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG
T ss_pred HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC
Confidence 56778999999999988763 444555555555555542111 112233232 5
Q ss_pred cCCEEEccCCcCcccCCC--CCCC------------------------CCCcEEEcc-----------cCCCCcc-chhh
Q 044898 193 ALTRLDLKHNDLSGSLAP--DSLP------------------------PSVQYLSLS-----------WNRLSGP-VDRL 234 (396)
Q Consensus 193 ~L~~L~l~~n~l~~~~~~--~~~~------------------------~~L~~L~L~-----------~n~l~~~-~~~~ 234 (396)
+|++|++++|.+.+.... .... ++|++|+++ .+.++.. ++..
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 677777777765432110 0111 345555555 2334322 1222
Q ss_pred hcCCCCCCEEeccCCcCcccCCccccC-c-ccCEEEcc----CCcccCcCC-------CCCCCCcCEEEccCCC--Cccc
Q 044898 235 LSRLDQLNYLDLSLNQFNGNIPGRIFT-F-PITNLQLQ----RNAFAGPVQ-------PPDQVTIPTVDLSHNM--LSGQ 299 (396)
Q Consensus 235 l~~l~~L~~L~l~~n~l~~~~p~~~~~-~-~L~~L~l~----~n~l~~~~~-------~~~~~~L~~L~ls~N~--l~~~ 299 (396)
...+++|++|+++.|.+++..+..+.. . +|++|+++ .|.+++... ...+++|++|+++++. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 334566666666666666555444433 2 57777775 445554211 1146778888886433 5443
Q ss_pred CC----cCCcccceEEeecccccccC-chhHHhcccCCcccEEEccCCcCCCCCCCC-CCCCCccchhcccCccCCCC
Q 044898 300 IS----PSFSTVQNLYLNNNRFTGQV-PGSFVDHLLDASIQILYLQHNFLTGIEINP-TAEIPSSSSLCLQYNCMVPP 371 (396)
Q Consensus 300 ~~----~~~~~L~~L~L~~N~l~~~~-~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~ 371 (396)
.+ ..+++|+.|++++|++++.. +..+..+ ++|++|+|++|.+++..... ...+++|++|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC---PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC---TTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC---cccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 22 23567899999999887643 3334444 88999999999886542222 23588999999999988743
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=6.7e-19 Score=153.63 Aligned_cols=141 Identities=23% Similarity=0.236 Sum_probs=109.1
Q ss_pred cCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCC
Q 044898 90 LDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTL 169 (396)
Q Consensus 90 l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 169 (396)
+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|+++...+..|..+
T Consensus 26 iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 26 IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 444443 578999999999988777788899999999999999998888889999999999999999986666667888
Q ss_pred cCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCC
Q 044898 170 PELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLN 249 (396)
Q Consensus 170 ~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 249 (396)
++|++|++++|++++..|..+. ..++|+.|++++|++++..+..|..+++|++|++++|
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~---------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQ---------------------DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT---------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCCCCEeCHHHcC---------------------CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 8888888888888755443332 1256666677777776666666777788888888888
Q ss_pred cCcc
Q 044898 250 QFNG 253 (396)
Q Consensus 250 ~l~~ 253 (396)
++..
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 7753
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=8.5e-19 Score=153.98 Aligned_cols=153 Identities=22% Similarity=0.285 Sum_probs=114.4
Q ss_pred cCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCc-cccCcccCEEEccC
Q 044898 193 ALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPG-RIFTFPITNLQLQR 271 (396)
Q Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~L~~L~l~~ 271 (396)
+.+.++.+++.+.. +|. ...++|++|++++|++++..|..|..+++|++|++++|+++ .+|. .+.
T Consensus 20 s~~~v~c~~~~l~~-ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~----------- 85 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFD----------- 85 (229)
T ss_dssp ETTEEECTTSCCSS-CCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-----------
T ss_pred eCCEeEccCCCcCc-cCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcc-----------
Confidence 45567777776653 333 44578888888888888877888888888888888888886 3443 222
Q ss_pred CcccCcCCCCCCCCcCEEEccCCCCcccCCc---CCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCC
Q 044898 272 NAFAGPVQPPDQVTIPTVDLSHNMLSGQISP---SFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIE 348 (396)
Q Consensus 272 n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~~---~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~ 348 (396)
.+++|++|++++|.|++..+. .+++|+.|++++|+++ .+|..+..+ ++|++|+|++|+|+.++
T Consensus 86 ----------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l---~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 86 ----------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL---THLTHLALDQNQLKSIP 151 (229)
T ss_dssp ----------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC---TTCSEEECCSSCCCCCC
T ss_pred ----------cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccC---CCCCEEECCCCcCCccC
Confidence 355666666666666655443 3457888888888888 778778777 88999999999999888
Q ss_pred CCCCCCCCccchhcccCccCCCCCCCCCC
Q 044898 349 INPTAEIPSSSSLCLQYNCMVPPVQMQCP 377 (396)
Q Consensus 349 ~~~~~~l~~L~~L~l~~N~l~~~~~c~c~ 377 (396)
...+..+++|+.|++++| +|.|+|+
T Consensus 152 ~~~~~~l~~L~~L~l~~N----~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGN----PWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTS----CBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCC----CccCCcc
Confidence 778888999999999999 7778886
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=152.15 Aligned_cols=155 Identities=21% Similarity=0.210 Sum_probs=119.0
Q ss_pred EEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccc-hhhcCCCCCcEEeccCCcCccccccccCCCCCCCEE
Q 044898 73 ALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLP-QSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTL 151 (396)
Q Consensus 73 ~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 151 (396)
.+++++ +.++ .+|..+. ..+++|++++|.+++..+ ..|.++++|++|++++|.+++..+..|.++++|++|
T Consensus 15 ~l~~s~-----n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 15 TVDCSN-----QKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp EEECCS-----SCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred EeEeCC-----CCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 455653 3333 3565553 356899999999988754 458899999999999999998777789999999999
Q ss_pred EeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccc
Q 044898 152 DLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPV 231 (396)
Q Consensus 152 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 231 (396)
++++|++++..+..|..+++|++|++++|++++..|..+. ..++|+.|++++|++++..
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---------------------GLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST---------------------TCTTCSEEECTTSCCCCBC
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC---------------------CCccCCEEECCCCcCCEEC
Confidence 9999999987777888999999999999888855444332 2256777777777777777
Q ss_pred hhhhcCCCCCCEEeccCCcCcccCC
Q 044898 232 DRLLSRLDQLNYLDLSLNQFNGNIP 256 (396)
Q Consensus 232 ~~~l~~l~~L~~L~l~~n~l~~~~p 256 (396)
|..|..+++|++|++++|++.+..+
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECSGG
T ss_pred HHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7788888888888888888875444
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.1e-18 Score=158.84 Aligned_cols=147 Identities=28% Similarity=0.390 Sum_probs=68.0
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ +| .+..+++|++|++++|++++. +.+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 4555555555555555554332 5555555555555555553 22 255555555555555555532 3455555555
Q ss_pred EEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcC
Q 044898 174 NVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQF 251 (396)
Q Consensus 174 ~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 251 (396)
+|++++|++++. + .+. ++|+.|++++|.+.+..+ ....++|+.|++++|.+++. + .+..+++|+.|++++|++
T Consensus 138 ~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 138 SLYLGNNKITDI-T-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred EEEccCCcCCcc-h-hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcc
Confidence 555555555532 1 111 344444444444443322 12223444444444444332 1 233444444444444443
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=6e-19 Score=160.70 Aligned_cols=149 Identities=25% Similarity=0.278 Sum_probs=98.8
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ + +.+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 45677888888888887754 3 47778888888888888885443 7888888888888888874 3 3478888888
Q ss_pred EEEccCCcccccCCchhh-ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCc
Q 044898 174 NVILCHNKLSGSVPPFLS-HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 174 ~L~l~~n~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (396)
+|++++|++++. +.... ++|+.|++++|.+.+. +.....++|+.|++++|++++..+ +..+++|++|++++|.++
T Consensus 116 ~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 888888888743 32111 5666666666666543 222233556666666666655433 555566666666666555
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.5e-19 Score=166.61 Aligned_cols=162 Identities=23% Similarity=0.166 Sum_probs=134.5
Q ss_pred cCccccCCCCCCEEEccCCcCccccchhhc-CCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCC
Q 044898 90 LDPAIGKLTSLAELSIVPGRVIGKLPQSLS-QLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGT 168 (396)
Q Consensus 90 l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 168 (396)
+|..+. ..++.|+|++|.+++..+..+. ++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..
T Consensus 33 iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 110 (361)
T 2xot_A 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110 (361)
T ss_dssp CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence 555443 3589999999999988887787 8999999999999999887788999999999999999999777778999
Q ss_pred CcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCC----CCCCCcEEEcccCCCCccchhhhcCCCC--
Q 044898 169 LPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDS----LPPSVQYLSLSWNRLSGPVDRLLSRLDQ-- 240 (396)
Q Consensus 169 l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~l~~l~~-- 240 (396)
+++|++|+|++|++++..|..+. ++|+.|++++|.+.+..+... ..++|+.|+|++|+++...+..+..++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 99999999999999976676665 789999999998886544321 2478899999999998877778888876
Q ss_pred CCEEeccCCcCcc
Q 044898 241 LNYLDLSLNQFNG 253 (396)
Q Consensus 241 L~~L~l~~n~l~~ 253 (396)
++.|++++|++..
T Consensus 191 l~~l~l~~N~~~C 203 (361)
T 2xot_A 191 KNGLYLHNNPLEC 203 (361)
T ss_dssp HTTEECCSSCEEC
T ss_pred cceEEecCCCccC
Confidence 4788999988763
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.4e-18 Score=173.17 Aligned_cols=172 Identities=23% Similarity=0.265 Sum_probs=141.8
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCc
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELS 173 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 173 (396)
+..+++|+.|++++|.+... + .+..+++|++|+|++|.+++..| +..+++|+.|+|++|.+++ + +.+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 56788999999999998754 3 58999999999999999996554 8899999999999999985 3 3789999999
Q ss_pred EEEccCCcccccCCchhh-ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCc
Q 044898 174 NVILCHNKLSGSVPPFLS-HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 174 ~L~l~~n~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (396)
.|+|++|.+.+ ++.... ++|+.|+|++|.+.+. +.....++|+.|+|++|.+++..| +..+++|+.|+|++|+++
T Consensus 113 ~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 113 SLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 99999999985 343222 8899999999999875 333445899999999999988766 889999999999999998
Q ss_pred ccCCccccCc-ccCEEEccCCcccCc
Q 044898 253 GNIPGRIFTF-PITNLQLQRNAFAGP 277 (396)
Q Consensus 253 ~~~p~~~~~~-~L~~L~l~~n~l~~~ 277 (396)
+ +| .+..+ +|+.|++++|.+.+.
T Consensus 189 ~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 D-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp B-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred C-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 4 44 34444 889999999888764
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=6.9e-20 Score=186.95 Aligned_cols=232 Identities=18% Similarity=0.112 Sum_probs=120.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCCCCCCCCC-CCCCCcceeEeCCCCEEEEEcCCCCCCCCCCceecCccccCCCCCCEE
Q 044898 25 LDPVDFLALQAIRKSLDDLPGSNFFASWDFT-SDPCNFAGVYCDADKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAEL 103 (396)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~-~~~C~w~gv~c~~~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L 103 (396)
....+.+++.++........ +..-..|... ...+.|.++.+..++++.|+|.++ ++.. .+..+.....|..+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n-----~~~~-~~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSK-TAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFAN-----GKDE-ANQALLQHKKLSQY 201 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHH-TTC--------------------------------------------------------
T ss_pred ccccchhhhhhhhhhccccc-CcccCCCcCCCCccccCCCceecCCccceEEeeCC-----CCCc-chhhHhhcCccCcc
Confidence 34456778888887764311 2223456432 455689999999999999999843 3333 23333222222222
Q ss_pred E-----ccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEcc
Q 044898 104 S-----IVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILC 178 (396)
Q Consensus 104 ~-----l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (396)
. ++.|.+. ..++.+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|+
T Consensus 202 ~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 202 SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 2 2233333 45777888999999999999998 67777778999999999999998 788889999999999999
Q ss_pred CCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCC-CCEEeccCCcCcccC
Q 044898 179 HNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQ-LNYLDLSLNQFNGNI 255 (396)
Q Consensus 179 ~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~ 255 (396)
+|.++ .+|..+. ++|++|+|++|.+..........++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++.+
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 99998 7788776 7888888888888744333333478888888888888888877655422 234678888888777
Q ss_pred CccccCcccCEEEccCC
Q 044898 256 PGRIFTFPITNLQLQRN 272 (396)
Q Consensus 256 p~~~~~~~L~~L~l~~n 272 (396)
|..+ +.|+++.|
T Consensus 358 p~~l-----~~l~l~~n 369 (727)
T 4b8c_D 358 PHER-----RFIEINTD 369 (727)
T ss_dssp CCC--------------
T ss_pred cccc-----ceeEeecc
Confidence 7644 44555555
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2e-18 Score=147.91 Aligned_cols=151 Identities=15% Similarity=0.233 Sum_probs=79.1
Q ss_pred cCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcE
Q 044898 95 GKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSN 174 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 174 (396)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34445555555555555 233 35555555555555554431 224555555555555555555444555555555555
Q ss_pred EEccCCcccccCCchhh--ccCCEEEccCCc-CcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcC
Q 044898 175 VILCHNKLSGSVPPFLS--HALTRLDLKHND-LSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQF 251 (396)
Q Consensus 175 L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 251 (396)
|++++|++++..|..+. ++|++|++++|. +. .++.....++|+.|++++|++++.. .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 55555555544444333 445555555554 22 2222223356666666666666432 566677777777777766
Q ss_pred c
Q 044898 252 N 252 (396)
Q Consensus 252 ~ 252 (396)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=5.7e-18 Score=168.89 Aligned_cols=168 Identities=24% Similarity=0.368 Sum_probs=143.9
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++.|+++++ .+.. ++ .+..+++|+.|+|++|.+.+..| +..+++|++|+|++|.+++ +| .+..+++|
T Consensus 43 ~~L~~L~l~~n-----~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 43 NSIDQIIANNS-----DIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp TTCCCCBCTTC-----CCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred CCCCEEECcCC-----CCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 57889999954 3432 33 58999999999999999998655 8999999999999999985 34 79999999
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNR 226 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 226 (396)
++|+|++|++++. +.+..+++|+.|+|++|.+++. ..+. ++|+.|+|++|.+.+..+ ....++|+.|+|++|+
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 9999999999853 5689999999999999999965 3343 899999999999998777 4566999999999999
Q ss_pred CCccchhhhcCCCCCCEEeccCCcCccc
Q 044898 227 LSGPVDRLLSRLDQLNYLDLSLNQFNGN 254 (396)
Q Consensus 227 l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 254 (396)
+++. ..+..+++|+.|+|++|++.+.
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 9975 3689999999999999999854
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-18 Score=156.67 Aligned_cols=147 Identities=23% Similarity=0.307 Sum_probs=87.9
Q ss_pred CCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEE
Q 044898 96 KLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175 (396)
Q Consensus 96 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 175 (396)
++.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3455667777777777543 4677788888888888877 344 57778888888888888875433 7788888888
Q ss_pred EccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCc
Q 044898 176 ILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 176 ~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (396)
++++|++++ +|....++|+.|++++|.+++. +.....++|+.|++++|++++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTCCCSSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCccccCcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 888887773 3322114455555555544432 1112224455555555544433 1 3444444555555544444
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=3.6e-20 Score=185.53 Aligned_cols=83 Identities=10% Similarity=0.040 Sum_probs=54.5
Q ss_pred CCCcCEEEccCCCCcccCCc----CCcccceEEeecccccccCchhH-HhcccCCcccEEEccCCcCCCCCCC-CCCCCC
Q 044898 283 QVTIPTVDLSHNMLSGQISP----SFSTVQNLYLNNNRFTGQVPGSF-VDHLLDASIQILYLQHNFLTGIEIN-PTAEIP 356 (396)
Q Consensus 283 ~~~L~~L~ls~N~l~~~~~~----~~~~L~~L~L~~N~l~~~~~~~~-~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~ 356 (396)
+++|+.|++++ .+++..+. .+++|+.|++++|.+++..+..+ ..+ ++|++|+|++|.+++.... ....++
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~---~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC---DSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC---TTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC---CCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34556666654 44332221 24568888888888876666555 444 8899999999988654333 334578
Q ss_pred ccchhcccCccCC
Q 044898 357 SSSSLCLQYNCMV 369 (396)
Q Consensus 357 ~L~~L~l~~N~l~ 369 (396)
+|+.|++++|+++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 8899999988764
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=1.5e-19 Score=180.92 Aligned_cols=81 Identities=6% Similarity=0.029 Sum_probs=49.1
Q ss_pred CCCcCEEEccCCCCcccCC----cCCcccceEEeecccccccCchhHHh-cccCCcccEEEccCCcCCCCCCCCC-CCCC
Q 044898 283 QVTIPTVDLSHNMLSGQIS----PSFSTVQNLYLNNNRFTGQVPGSFVD-HLLDASIQILYLQHNFLTGIEINPT-AEIP 356 (396)
Q Consensus 283 ~~~L~~L~ls~N~l~~~~~----~~~~~L~~L~L~~N~l~~~~~~~~~~-~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~ 356 (396)
+++|+.|++++|.+++..+ ..+++|+.|++++|.+++.....+.. + ++|++|++++|.++......+ ..+|
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~l~~~lp 531 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL---ETMRSLWMSSCSVSFGACKLLGQKMP 531 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG---GGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC---CCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence 5678888888887765433 23567788888888775444433322 3 678888888887754333223 2356
Q ss_pred ccchhcccCc
Q 044898 357 SSSSLCLQYN 366 (396)
Q Consensus 357 ~L~~L~l~~N 366 (396)
.++...+..+
T Consensus 532 ~l~i~~~~~~ 541 (594)
T 2p1m_B 532 KLNVEVIDER 541 (594)
T ss_dssp TEEEEEECSS
T ss_pred CCEEEEecCC
Confidence 6655555444
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=5.2e-18 Score=144.74 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=95.8
Q ss_pred eecCccccCCCCCCEEEccCCcCccccch-hhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCccc
Q 044898 88 GRLDPAIGKLTSLAELSIVPGRVIGKLPQ-SLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSI 166 (396)
Q Consensus 88 ~~l~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 166 (396)
+.+|..+.. +|++|++++|.+++..+. .|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 98 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh
Confidence 345655543 889999999998876664 48889999999999999998888889999999999999999998777788
Q ss_pred CCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccC
Q 044898 167 GTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSL 208 (396)
Q Consensus 167 ~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~ 208 (396)
..+++|++|++++|++++..|..+. ++|++|++++|.+.+..
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 8899999999999998877776665 56777777777766543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.1e-20 Score=187.34 Aligned_cols=199 Identities=22% Similarity=0.198 Sum_probs=105.3
Q ss_pred CCCCcEEeccCCcCccccccccCCCCCCCEEEeecCc-------------CCCCCCcccCCCcCCcEEE-ccCCcccccC
Q 044898 121 LKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQ-------------LTGAIPQSIGTLPELSNVI-LCHNKLSGSV 186 (396)
Q Consensus 121 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-l~~n~l~~~~ 186 (396)
.++|+.|+|++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 444445555555444 444444444444444443332 3445566666667777766 5555443
Q ss_pred CchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCE
Q 044898 187 PPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITN 266 (396)
Q Consensus 187 p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~ 266 (396)
.|+.+.+++|.+....+ ..|+.|++++|.+++ +|. ++.+++|++|++++|.++ .+|..+..
T Consensus 424 ------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~----- 484 (567)
T 1dce_A 424 ------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA----- 484 (567)
T ss_dssp ------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-----
T ss_pred ------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc-----
Confidence 22233334444433222 246677777777765 343 677777777777777776 66665554
Q ss_pred EEccCCcccCcCCCCCCCCcCEEEccCCCCcccCC--cCCcccceEEeecccccccC-chhHHhcccCCcccEEEccCCc
Q 044898 267 LQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQIS--PSFSTVQNLYLNNNRFTGQV-PGSFVDHLLDASIQILYLQHNF 343 (396)
Q Consensus 267 L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~~--~~~~~L~~L~L~~N~l~~~~-~~~~~~~~~~~~L~~L~L~~N~ 343 (396)
+++|+.|++++|.|++ +| ..+++|+.|+|++|+|++.. |..+..+ ++|+.|+|++|.
T Consensus 485 ----------------l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l---~~L~~L~L~~N~ 544 (567)
T 1dce_A 485 ----------------LRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSC---PRLVLLNLQGNS 544 (567)
T ss_dssp ----------------CTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGC---TTCCEEECTTSG
T ss_pred ----------------CCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcC---CCCCEEEecCCc
Confidence 3344444444444443 22 12335556666666666544 6666665 666666666666
Q ss_pred CCCCCCCCC---CCCCccchhc
Q 044898 344 LTGIEINPT---AEIPSSSSLC 362 (396)
Q Consensus 344 l~~~~~~~~---~~l~~L~~L~ 362 (396)
++++++... ..+|+|+.|+
T Consensus 545 l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 545 LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCccHHHHHHHHCcccCccC
Confidence 666543221 1255555553
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.9e-17 Score=138.34 Aligned_cols=150 Identities=21% Similarity=0.264 Sum_probs=124.9
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.+++.|++++ +.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|
T Consensus 44 ~~L~~L~l~~-----n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLAN-----INVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HTCCEEEEES-----SCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred CCccEEeccC-----CCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4789999995 4454 455 68999999999999997754 3578999999999999999998889999999999
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCc-ccccCCchhh-ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNK-LSGSVPPFLS-HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNR 226 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 226 (396)
++|++++|++++..|..+..+++|++|++++|+ ++ .+|.... ++|+.|++++|.+.+.. .....++|+.|++++|+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 999999999998788999999999999999998 65 5663222 88999999999998644 33455899999999999
Q ss_pred CCc
Q 044898 227 LSG 229 (396)
Q Consensus 227 l~~ 229 (396)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 864
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=4.9e-17 Score=138.72 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=60.6
Q ss_pred CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCCCCCCCC
Q 044898 304 FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCPLRSGKQ 383 (396)
Q Consensus 304 ~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~~~~~~~ 383 (396)
+++|+.|+|++|++++..|..|..+ ++|++|+|++|+|+.++...|..+++|+.+++++| +|.|+|.+.|+..
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N----~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGL---KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN----PLYCDCNMQWLSD 149 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTC---TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS----CEECSGGGHHHHH
T ss_pred CCCCCEEECCCCccCEeCHHHhCCC---CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC----CeecCCcCHHHHH
Confidence 3456667777777776666677777 89999999999999998888999999999999999 8889999888543
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.8e-20 Score=182.74 Aligned_cols=202 Identities=18% Similarity=0.128 Sum_probs=145.6
Q ss_pred ccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCc-------------CccccccccCCCCCCCEEE-eecCcCC
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNF-------------VSGEIPAALGQLRGLRTLD-LSYNQLT 159 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~ 159 (396)
+...++|+.|++++|.++ .+|+.++++++|++|++++|. +.+..|..++.+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 367889999999999997 689999999999999997775 5667788888999999998 666643
Q ss_pred CCCCcccCCCcCCcEEEccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCC
Q 044898 160 GAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLD 239 (396)
Q Consensus 160 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 239 (396)
..|+.+.+++|.++. +|. ..|+.|++++|.+++. |.....++|+.|++++|.++ .+|..++.++
T Consensus 423 ----------~~L~~l~l~~n~i~~-l~~---~~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 423 ----------DDLRSKFLLENSVLK-MEY---ADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp ----------HHHHHHHHHHHHHHH-HHH---TTCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred ----------chhhhhhhhcccccc-cCc---cCceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchhhhcCC
Confidence 356666777777662 221 3588888888888864 44344488999999999998 6678899999
Q ss_pred CCCEEeccCCcCcccCCccccCcccCEEEccCCcccCcCCCCCCCCcCEEEccCCCCcccC-CcC---CcccceEEeecc
Q 044898 240 QLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGPVQPPDQVTIPTVDLSHNMLSGQI-SPS---FSTVQNLYLNNN 315 (396)
Q Consensus 240 ~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N~l~~~~-~~~---~~~L~~L~L~~N 315 (396)
+|++|++++|++++ +| .+.. +++|+.|++++|.|++.. |.. +++|+.|+|++|
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~---------------------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVAN---------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTT---------------------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCEEECCCCCCCC-Cc-ccCC---------------------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 99999999999984 56 4444 445555555556555554 433 345666677777
Q ss_pred cccccCch---hHHhcccCCcccEEEc
Q 044898 316 RFTGQVPG---SFVDHLLDASIQILYL 339 (396)
Q Consensus 316 ~l~~~~~~---~~~~~~~~~~L~~L~L 339 (396)
.+++..|. .+..+ ++|+.|++
T Consensus 544 ~l~~~~~~~~~l~~~l---p~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEML---PSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHC---TTCSEEEC
T ss_pred cCCCCccHHHHHHHHC---cccCccCC
Confidence 66654332 12223 77777764
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.5e-17 Score=140.45 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=71.4
Q ss_pred ccCEEEccCCcccCcCCC---CCCCCcCEEEccCCCCcccCCcCC---cccceEEeecccccccCchhHHhcccCCcccE
Q 044898 263 PITNLQLQRNAFAGPVQP---PDQVTIPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLDASIQI 336 (396)
Q Consensus 263 ~L~~L~l~~n~l~~~~~~---~~~~~L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~ 336 (396)
.+++|++++|.+++..+. ..+++|++|++++|.|++..|..+ ++|++|+|++|+|++..+..|..+ ++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL---HQLKT 106 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC---TTCCE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC---CCCCE
Confidence 344444444444433321 245666667777776666655443 456777777777776666666666 77777
Q ss_pred EEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCCCCCC
Q 044898 337 LYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCPLRSG 381 (396)
Q Consensus 337 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~~~~~ 381 (396)
|+|++|+|+++.+..+..+++|++|++++| +|.|+|++.|.
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N----~l~c~c~l~~~ 147 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASN----PFNCNCHLAWF 147 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTC----CBCCSGGGHHH
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCC----CccCcCcchHH
Confidence 777777777776667777777777777777 66677776653
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.4e-16 Score=142.69 Aligned_cols=150 Identities=23% Similarity=0.327 Sum_probs=120.4
Q ss_pred cccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCC
Q 044898 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPEL 172 (396)
Q Consensus 93 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 172 (396)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ +|. +.. ++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L 108 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACL 108 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSC
T ss_pred chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-Ccc
Confidence 47788889999999998875 44 68888999999999999886544 8889999999999999885 333 333 889
Q ss_pred cEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCc
Q 044898 173 SNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQ 250 (396)
Q Consensus 173 ~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 250 (396)
++|++++|++++ ++. +. ++|+.|++++|.+++.. .....++|+.|++++|++++. ..+..+++|++|++++|+
T Consensus 109 ~~L~L~~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 109 SRLFLDNNELRD-TDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECCSSCCSB-SGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred cEEEccCCccCC-Chh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 999999999885 342 33 78999999999988653 334458999999999999877 678899999999999999
Q ss_pred Cccc
Q 044898 251 FNGN 254 (396)
Q Consensus 251 l~~~ 254 (396)
+++.
T Consensus 184 ~~~~ 187 (263)
T 1xeu_A 184 CVNE 187 (263)
T ss_dssp EECC
T ss_pred ccCC
Confidence 9844
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=2.5e-16 Score=131.14 Aligned_cols=139 Identities=24% Similarity=0.295 Sum_probs=92.2
Q ss_pred CCCCCEEEccCCcCc-cccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEE
Q 044898 97 LTSLAELSIVPGRVI-GKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNV 175 (396)
Q Consensus 97 l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 175 (396)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777776 55666666677777777777776644 556667777777777777765566666666666666
Q ss_pred EccCCcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccch---hhhcCCCCCCEEeccCCcCc
Q 044898 176 ILCHNKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVD---RLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 176 ~l~~n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 252 (396)
++++|++++. |. .......++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~-~~-------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDI-ST-------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSS-GG-------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcc-hh-------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666666522 10 0111223677777787777776655 57888999999999999887
Q ss_pred ccCCcc
Q 044898 253 GNIPGR 258 (396)
Q Consensus 253 ~~~p~~ 258 (396)
.+|..
T Consensus 161 -~~~~~ 165 (168)
T 2ell_A 161 -EAPDS 165 (168)
T ss_dssp -BCCSS
T ss_pred -hcccc
Confidence 55543
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.2e-17 Score=168.48 Aligned_cols=187 Identities=19% Similarity=0.146 Sum_probs=113.5
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCcEE-----eccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCC
Q 044898 98 TSLAELSIVPGRVIGKLPQSLSQLKNLRFF-----AISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPEL 172 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L-----~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 172 (396)
+.++.|++.+|.+... +..+.....|..+ ++..|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5678888888887753 4433333333332 33334444 56788999999999999999998 778788899999
Q ss_pred cEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCC-CCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCC
Q 044898 173 SNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAP-DSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLN 249 (396)
Q Consensus 173 ~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 249 (396)
++|+|++|.++ .+|..+. ++|+.|+|++|.++. +|. ....++|++|+|++|.++ .+|..|+.+++|++|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999999 8898776 889999999999994 454 233389999999999998 56777999999999999999
Q ss_pred cCcccCCccccCc--ccCEEEccCCcccCcCCCCCCCCcCEEEccCC
Q 044898 250 QFNGNIPGRIFTF--PITNLQLQRNAFAGPVQPPDQVTIPTVDLSHN 294 (396)
Q Consensus 250 ~l~~~~p~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~L~~L~ls~N 294 (396)
++++.+|..+... ....+++++|.+++..|. .|+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~----~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH----ERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----C---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc----ccceeEeecc
Confidence 9999888887664 333567888888876653 4677777766
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=8.3e-16 Score=129.17 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=90.9
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEc
Q 044898 98 TSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVIL 177 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 177 (396)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 58889999999888777777888899999999999988766667788899999999999998776777888899999999
Q ss_pred cCCcccccCCchhh--ccCCEEEccCCcCcccCC
Q 044898 178 CHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLA 209 (396)
Q Consensus 178 ~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~ 209 (396)
++|++++..+..+. ++|+.|++++|.+.+..+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99988844443333 788999999998876543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.6e-16 Score=129.57 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=111.5
Q ss_pred CCEEEEEcCCCCCCCCCCc-eecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLT-GRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRG 147 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~-~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 147 (396)
.+++.|++++ +.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++
T Consensus 24 ~~L~~L~l~~-----n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDN-----CKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCS-----CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCC-----CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 5799999994 5666 78888899999999999999999876 77999999999999999999878888888999
Q ss_pred CCEEEeecCcCCCCC-CcccCCCcCCcEEEccCCcccccCC---chhh--ccCCEEEccCCcCcc
Q 044898 148 LRTLDLSYNQLTGAI-PQSIGTLPELSNVILCHNKLSGSVP---PFLS--HALTRLDLKHNDLSG 206 (396)
Q Consensus 148 L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~--~~L~~L~l~~n~l~~ 206 (396)
|++|++++|++++.. +..+..+++|++|++++|++++..+ ..+. ++|++|++++|.+..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999999999642 2789999999999999999995433 1333 678888888777654
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.7e-16 Score=144.83 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=68.0
Q ss_pred ccCEEEccCCcccCcCC--CCCCCCcCEEEccCCCCcccCCcCC---cccc-eEEeecccccccCchhHHhcccCCcccE
Q 044898 263 PITNLQLQRNAFAGPVQ--PPDQVTIPTVDLSHNMLSGQISPSF---STVQ-NLYLNNNRFTGQVPGSFVDHLLDASIQI 336 (396)
Q Consensus 263 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~ls~N~l~~~~~~~~---~~L~-~L~L~~N~l~~~~~~~~~~~~~~~~L~~ 336 (396)
+|+++++++|+++.... ..++.+|+.+++.+| ++......| .+|+ .+++.+ .++...+.+|.++ ++|+.
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c---~~L~~ 301 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC---DNLRY 301 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC---TTEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC---ccCCE
Confidence 44444444444443222 125677888888776 554444444 4677 888888 7776777889888 89999
Q ss_pred EEccCCcCCCCCCCCCCCCCccchhc
Q 044898 337 LYLQHNFLTGIEINPTAEIPSSSSLC 362 (396)
Q Consensus 337 L~L~~N~l~~~~~~~~~~l~~L~~L~ 362 (396)
+++++|+++.++..+|.++++|+.+.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 99999999999999999999998875
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=8e-16 Score=125.40 Aligned_cols=127 Identities=25% Similarity=0.305 Sum_probs=79.3
Q ss_pred CCCCEEEccCCcCc-cccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEE
Q 044898 98 TSLAELSIVPGRVI-GKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVI 176 (396)
Q Consensus 98 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 176 (396)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56677777777766 55666666677777777777766644 5566666677777777766655566555566666666
Q ss_pred ccCCccccc-CCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccch---hhhcCCCCCCEEecc
Q 044898 177 LCHNKLSGS-VPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVD---RLLSRLDQLNYLDLS 247 (396)
Q Consensus 177 l~~n~l~~~-~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~ 247 (396)
+++|++++. .+..+ ...++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~---------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPL---------------------KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGG---------------------GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHH---------------------hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666531 11111 222556666666666665544 467777778877765
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=6.6e-16 Score=125.90 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=107.9
Q ss_pred CCEEEEEcCCCCCCCCCCc-eecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLT-GRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRG 147 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~-~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 147 (396)
.+++.|++++ +.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++
T Consensus 17 ~~l~~L~l~~-----n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDN-----SRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTT-----CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccC-----CcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 4688999994 5676 78898899999999999999999976 77999999999999999999878888888999
Q ss_pred CCEEEeecCcCCCC-CCcccCCCcCCcEEEccCCcccccCC---chhh--ccCCEEEcc
Q 044898 148 LRTLDLSYNQLTGA-IPQSIGTLPELSNVILCHNKLSGSVP---PFLS--HALTRLDLK 200 (396)
Q Consensus 148 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~--~~L~~L~l~ 200 (396)
|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+. ++|+.|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999999963 34789999999999999999995544 2343 788888775
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=127.09 Aligned_cols=115 Identities=27% Similarity=0.306 Sum_probs=96.2
Q ss_pred ecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCC
Q 044898 89 RLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGT 168 (396)
Q Consensus 89 ~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 168 (396)
.+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC
Confidence 3554443 58999999999987 56788999999999999999999887888999999999999999999887888999
Q ss_pred CcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcc
Q 044898 169 LPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSG 206 (396)
Q Consensus 169 l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~ 206 (396)
+++|++|++++|+++...+..+. ++|+.|++++|.+..
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999999999999844444454 789999999998864
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.9e-14 Score=119.66 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=90.3
Q ss_pred CCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccC
Q 044898 100 LAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCH 179 (396)
Q Consensus 100 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 179 (396)
.+.+++++++++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4677777777764 34333 36788888888888766666677788888888888888766566677777777777777
Q ss_pred CcccccCCchhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCC
Q 044898 180 NKLSGSVPPFLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIP 256 (396)
Q Consensus 180 n~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 256 (396)
|++++..+..+ ...++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~---------------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVF---------------------DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTT---------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHh---------------------hCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77773322222 122566667777777766656566777778888888887776544
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=9e-17 Score=137.72 Aligned_cols=152 Identities=21% Similarity=0.242 Sum_probs=91.9
Q ss_pred ccCCCCCCEEEccCCcCccccch------hhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccC
Q 044898 94 IGKLTSLAELSIVPGRVIGKLPQ------SLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIG 167 (396)
Q Consensus 94 ~~~l~~L~~L~l~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 167 (396)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44455666666666666665554 67777777777777777774 45 6677777777777777777 5566666
Q ss_pred CCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCC--CCCCCCCCcEEEcccCCCCccchh----------
Q 044898 168 TLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLA--PDSLPPSVQYLSLSWNRLSGPVDR---------- 233 (396)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~---------- 233 (396)
.+++|++|++++|++++ +| .+. ++|+.|++++|.+.+..+ .....++|++|++++|.+++..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 66777777777777764 33 232 556666666666553221 112235566666666655544332
Q ss_pred hhcCCCCCCEEeccCCcCc
Q 044898 234 LLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 234 ~l~~l~~L~~L~l~~n~l~ 252 (396)
.+..+++|++|| +|.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 255566666665 44443
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=5.6e-14 Score=117.13 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=91.0
Q ss_pred EEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEE
Q 044898 72 IALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTL 151 (396)
Q Consensus 72 ~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 151 (396)
+.+++++ +.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 12 ~~l~~s~-----n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 12 TTVDCSG-----KSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TEEECTT-----SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEeCC-----CCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 3556663 3443 3565553 789999999999999889999999999999999999997777778999999999
Q ss_pred EeecCcCCCCCCcccCCCcCCcEEEccCCcccccCC
Q 044898 152 DLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVP 187 (396)
Q Consensus 152 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 187 (396)
++++|++++..+..|..+++|++|++++|++....+
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999997777789999999999999999985543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.2e-14 Score=132.88 Aligned_cols=236 Identities=13% Similarity=0.127 Sum_probs=129.0
Q ss_pred CCCCCEEEccCCcCc--------------------cccchhhcC--------CCCCcEEeccCCcCccccccccCCCCCC
Q 044898 97 LTSLAELSIVPGRVI--------------------GKLPQSLSQ--------LKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 97 l~~L~~L~l~~n~l~--------------------~~~p~~l~~--------l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
+++|++|||++|++. ...+.+|.+ +++|+++++.+ .++.+.+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 677888888887776 112234555 67777777776 6665555667777777
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcc----cccCCchhh--ccCC-EEEccCCcC-cccCC-CCCCCCCCcE
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKL----SGSVPPFLS--HALT-RLDLKHNDL-SGSLA-PDSLPPSVQY 219 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l----~~~~p~~~~--~~L~-~L~l~~n~l-~~~~~-~~~~~~~L~~ 219 (396)
+.|++++|.++...+.+|..+.++..+....+.. .......+. ..++ .+.+....- ..... ......+++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 7777777766655556666666565555544221 000011111 2222 122211100 00000 0001134455
Q ss_pred EEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCc-cccCc-ccCEEEccCCcccCcCC--CCCCCCcC-EEEccCC
Q 044898 220 LSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPG-RIFTF-PITNLQLQRNAFAGPVQ--PPDQVTIP-TVDLSHN 294 (396)
Q Consensus 220 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~-~L~~L~l~~n~l~~~~~--~~~~~~L~-~L~ls~N 294 (396)
+.+.++-...........+++|+.+++++|+++ .+|. .|... +|+++++.+| ++.... ..++.+|+ .+++.+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 555443221111111123566777777766666 3333 34444 6777776665 443222 23677888 888887
Q ss_pred CCcccCCcCC---cccceEEeecccccccCchhHHhcccCCcccEEEc
Q 044898 295 MLSGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYL 339 (396)
Q Consensus 295 ~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L 339 (396)
.++...+..| .+|+.+++++|.++...+.+|.++ ++|+.++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~---~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG---VPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT---CCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC---cchhhhcc
Confidence 6655444444 578899999999997777788887 88998874
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.5e-14 Score=119.95 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=80.8
Q ss_pred cccCCCCCCEEEccCCcCccccchhhcCCC-CCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcC
Q 044898 93 AIGKLTSLAELSIVPGRVIGKLPQSLSQLK-NLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPE 171 (396)
Q Consensus 93 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 171 (396)
.+.+..+|++|++++|.++.. |. +..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 455667777777777777643 43 33333 777777777777754 45667777777777777776443344466777
Q ss_pred CcEEEccCCcccccCCc--hhhccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchh---hhcCCCCCCEEec
Q 044898 172 LSNVILCHNKLSGSVPP--FLSHALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDR---LLSRLDQLNYLDL 246 (396)
Q Consensus 172 L~~L~l~~n~l~~~~p~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l 246 (396)
|++|++++|+++ .+|. .+. ..++|+.|++++|.++...+. .+..+++|++||+
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~---------------------~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLA---------------------SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGG---------------------GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred CCEEECCCCcCC-cchhhHhhh---------------------cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 777777777765 3333 221 124455555555555422211 3667777777777
Q ss_pred cCCcCc
Q 044898 247 SLNQFN 252 (396)
Q Consensus 247 ~~n~l~ 252 (396)
+.|...
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 777654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.2e-14 Score=118.57 Aligned_cols=134 Identities=20% Similarity=0.249 Sum_probs=96.6
Q ss_pred hhcCCCCCcEEeccCCcCccccccccCCC-CCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhhccCC
Q 044898 117 SLSQLKNLRFFAISRNFVSGEIPAALGQL-RGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLSHALT 195 (396)
Q Consensus 117 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~ 195 (396)
.+.++.+|++|++++|.++. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|++++ +|..+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~---- 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLD---- 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHH----
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchh----
Confidence 35677888999999998884 454 4444 4889999999888854 577888888888888888873 332221
Q ss_pred EEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccch-hhhcCCCCCCEEeccCCcCcccCCcc----ccCc-ccCEEEc
Q 044898 196 RLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVD-RLLSRLDQLNYLDLSLNQFNGNIPGR----IFTF-PITNLQL 269 (396)
Q Consensus 196 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~----~~~~-~L~~L~l 269 (396)
...++|++|++++|.++...+ ..+..+++|++|++++|+++ .+|.. +... +|++|++
T Consensus 85 ----------------~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 85 ----------------QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ----------------HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred ----------------hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 112456666666666653322 37889999999999999998 56664 5444 8999999
Q ss_pred cCCcccC
Q 044898 270 QRNAFAG 276 (396)
Q Consensus 270 ~~n~l~~ 276 (396)
+.|.+..
T Consensus 148 ~~n~~~~ 154 (176)
T 1a9n_A 148 QKVKLKE 154 (176)
T ss_dssp EECCHHH
T ss_pred CcCCHHH
Confidence 9998754
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=4.1e-16 Score=133.59 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=113.5
Q ss_pred hhcCCCCCcEEeccCCcCcccccc------ccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchh
Q 044898 117 SLSQLKNLRFFAISRNFVSGEIPA------ALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFL 190 (396)
Q Consensus 117 ~l~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 190 (396)
.+.....++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 356677888899999998888776 89999999999999999996 66 8889999999999999999 677766
Q ss_pred h--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccch-hhhcCCCCCCEEeccCCcCcccCCc
Q 044898 191 S--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVD-RLLSRLDQLNYLDLSLNQFNGNIPG 257 (396)
Q Consensus 191 ~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~ 257 (396)
. ++|+.|++++|.+.+.. .....++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 5 78999999999988643 22233789999999999986543 5788899999999999998866554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1e-13 Score=115.57 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccc
Q 044898 283 QVTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSS 359 (396)
Q Consensus 283 ~~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 359 (396)
.+++++|++++|.|++..|.. +++|+.|+|++|+|++..+..|..+ ++|++|+|++|+|+++++..|..+++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL---TQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC---CCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 356777777777777665544 3567788888888886666666666 7888888888888888777788888888
Q ss_pred hhcccCccCCCCCCCCCC
Q 044898 360 SLCLQYNCMVPPVQMQCP 377 (396)
Q Consensus 360 ~L~l~~N~l~~~~~c~c~ 377 (396)
.|++++| +|.|+|+
T Consensus 106 ~L~L~~N----~~~c~c~ 119 (170)
T 3g39_A 106 HIWLLNN----PWDCACS 119 (170)
T ss_dssp EEECCSS----CBCTTBG
T ss_pred EEEeCCC----CCCCCch
Confidence 8888888 7778885
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=2e-13 Score=114.17 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=91.2
Q ss_pred EEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEE
Q 044898 72 IALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTL 151 (396)
Q Consensus 72 ~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 151 (396)
+.+++++ +.+ +.+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 15 ~~l~~~~-----n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQN-----IRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCS-----SCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCC-----CCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 5678884 344 45676664 799999999999999889999999999999999999997766678999999999
Q ss_pred EeecCcCCCCCCcccCCCcCCcEEEccCCccccc
Q 044898 152 DLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGS 185 (396)
Q Consensus 152 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 185 (396)
++++|++++..+..|..+++|++|++++|++...
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999976666799999999999999999843
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=3.8e-12 Score=120.66 Aligned_cols=255 Identities=9% Similarity=0.049 Sum_probs=123.1
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEc
Q 044898 98 TSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVIL 177 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 177 (396)
..++.+.+. +.++.....+|.+. +|+.+.+..+ ++.+...+|.+. +|+.+.+.. .++...+.+|.++++|+.+++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 344444443 23333334444443 4555555444 333333444442 455555543 333333445555555555555
Q ss_pred cCCcccccCCchhh-ccCCEEEccCCcCcccCCCCCC-CCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccC
Q 044898 178 CHNKLSGSVPPFLS-HALTRLDLKHNDLSGSLAPDSL-PPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNI 255 (396)
Q Consensus 178 ~~n~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 255 (396)
.+|.++..-...+. .+|+.+.+..+ +.......+. .++|+.+++..+ ++.+....|.+ .+|+.+.+. +.++...
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~ 263 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIA 263 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEEC
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEC
Confidence 55555422222222 44555555432 2222221111 145555555442 34344444444 455555553 2333222
Q ss_pred CccccCc-ccCEEEccCCccc-------CcCCCCCCCCcCEEEccCCCCcccCCcCC---cccceEEeecccccccCchh
Q 044898 256 PGRIFTF-PITNLQLQRNAFA-------GPVQPPDQVTIPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGS 324 (396)
Q Consensus 256 p~~~~~~-~L~~L~l~~n~l~-------~~~~~~~~~~L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~ 324 (396)
+..+... +|+.+++.+|.+. +.....++++|+.+++.+ .++......| .+|+.+.+..| ++.....+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 2333333 4555555444432 111222566777777763 3543333333 45777777554 55455556
Q ss_pred HHhcccCCcccEEEccCCcCCCCCCCCCCCCC-ccchhcccCcc
Q 044898 325 FVDHLLDASIQILYLQHNFLTGIEINPTAEIP-SSSSLCLQYNC 367 (396)
Q Consensus 325 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~ 367 (396)
|.++ +|+.+++.+|.+..+....|..++ .+..+.+..+.
T Consensus 342 F~~~----~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 342 FNNT----GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSSS----CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCC----CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 6553 688888888887777777777764 56666666553
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=4.8e-13 Score=111.83 Aligned_cols=87 Identities=23% Similarity=0.329 Sum_probs=58.5
Q ss_pred CCcCEEEccCCCCcccCCcC---CcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccch
Q 044898 284 VTIPTVDLSHNMLSGQISPS---FSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSS 360 (396)
Q Consensus 284 ~~L~~L~ls~N~l~~~~~~~---~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 360 (396)
++|++|++++|.|++..|.. +++|+.|+|++|+|++..+..|..+ ++|++|+|++|+|+.++...|..+++|+.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL---TQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc---chhhEEECCCCccceeCHHHhccccCCCE
Confidence 45666666666666555543 3456777777777775444445555 77777777777777776666777777777
Q ss_pred hcccCccCCCCCCCCCC
Q 044898 361 LCLQYNCMVPPVQMQCP 377 (396)
Q Consensus 361 L~l~~N~l~~~~~c~c~ 377 (396)
|++++| +|.|+|.
T Consensus 110 L~L~~N----~~~c~~~ 122 (174)
T 2r9u_A 110 IYLYNN----PWDCECR 122 (174)
T ss_dssp EECCSS----CBCTTBG
T ss_pred EEeCCC----Ccccccc
Confidence 777777 6667775
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=1.1e-11 Score=117.51 Aligned_cols=236 Identities=11% Similarity=0.042 Sum_probs=180.5
Q ss_pred CCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEE
Q 044898 120 QLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRL 197 (396)
Q Consensus 120 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L 197 (396)
.+..++.+.+.++ ++.+...+|.+. +|+.+.+..+ ++.....+|.+. +|+.+.+.. .+....+.+|. .+|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3477888888764 555666788875 7999999877 665666778874 799999986 56644445554 789999
Q ss_pred EccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCcccCEEEccCCcccCc
Q 044898 198 DLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTFPITNLQLQRNAFAGP 277 (396)
Q Consensus 198 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~ 277 (396)
++.+|.+.......+...+|+.+.+.. .++.+....|.++++|+.+++..| ++......+...+|+.+.+.+ .++..
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~-~i~~I 262 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN-GVTNI 262 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET-TCCEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC-CccEE
Confidence 999999986665544458999999985 488777889999999999999975 553444555556999999954 44432
Q ss_pred --CCCCCCCCcCEEEccCCCCc-----ccCC---cCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCC
Q 044898 278 --VQPPDQVTIPTVDLSHNMLS-----GQIS---PSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGI 347 (396)
Q Consensus 278 --~~~~~~~~L~~L~ls~N~l~-----~~~~---~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~ 347 (396)
.....+++|+.+++.+|.+. .... ....+|+.+++. +.++.....+|.++ ++|+.++|..| ++.+
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c---~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN---RKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC---CSCCEEEECTT-CCEE
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC---CCccEEEECcc-ccEE
Confidence 23347899999999998765 2222 234579999999 45776777888887 89999999655 8889
Q ss_pred CCCCCCCCCccchhcccCccCC
Q 044898 348 EINPTAEIPSSSSLCLQYNCMV 369 (396)
Q Consensus 348 ~~~~~~~l~~L~~L~l~~N~l~ 369 (396)
+..+|..+ +|+.+.+.+|.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCC
T ss_pred cHHhCCCC-CCCEEEEcCCCCc
Confidence 99999999 9999999999654
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=8e-13 Score=123.16 Aligned_cols=109 Identities=25% Similarity=0.279 Sum_probs=94.3
Q ss_pred CCcceeEeCCCCEEEEEcCCCCCCCC-CCceecCccccCCCCCCEEEccC-CcCccccchhhcCCCCCcEEeccCCcCcc
Q 044898 59 CNFAGVYCDADKVIALNLGDPRAGSP-GLTGRLDPAIGKLTSLAELSIVP-GRVIGKLPQSLSQLKNLRFFAISRNFVSG 136 (396)
Q Consensus 59 C~w~gv~c~~~~v~~L~L~~~~~~~~-~l~~~l~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 136 (396)
|.|..|.|. ++ ++++ +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++
T Consensus 8 C~~~~v~~~---------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 8 HGSSGLRCT---------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp SSSSCEECC---------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred ccCCEEEcC---------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce
Confidence 777777665 23 4543 787 99999999999996 99998888999999999999999999999
Q ss_pred ccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCccccc
Q 044898 137 EIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGS 185 (396)
Q Consensus 137 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 185 (396)
..|..|.++++|++|+|++|++++..+..+..++ |+.|++.+|.+...
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999999999999999999999976666666666 99999999999854
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=5.2e-14 Score=132.25 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=79.9
Q ss_pred CCCCEEEccCCcCccccchhhcC-----CCCCcEEeccCCcCcccccccc-CCCCCCCEEEeecCcCCCCCCccc-----
Q 044898 98 TSLAELSIVPGRVIGKLPQSLSQ-----LKNLRFFAISRNFVSGEIPAAL-GQLRGLRTLDLSYNQLTGAIPQSI----- 166 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~----- 166 (396)
+.|++|++++|.++......+.. .++|++|+|++|.++......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666665443322222 2466666666666653322222 224456666666666653222222
Q ss_pred CCCcCCcEEEccCCcccccCCchh----h--ccCCEEEccCCcCcccCC-----CCCCCCCCcEEEcccCCCCcc----c
Q 044898 167 GTLPELSNVILCHNKLSGSVPPFL----S--HALTRLDLKHNDLSGSLA-----PDSLPPSVQYLSLSWNRLSGP----V 231 (396)
Q Consensus 167 ~~l~~L~~L~l~~n~l~~~~p~~~----~--~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~n~l~~~----~ 231 (396)
...++|++|++++|.++......+ . ++|++|++++|.+..... .....++|+.|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234566666666666553211111 1 445555555555542110 001124566666666666532 2
Q ss_pred hhhhcCCCCCCEEeccCCcCcccCC
Q 044898 232 DRLLSRLDQLNYLDLSLNQFNGNIP 256 (396)
Q Consensus 232 ~~~l~~l~~L~~L~l~~n~l~~~~p 256 (396)
+..+...++|++|+|++|.+++...
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHH
Confidence 3344455667777777777664433
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=1.4e-13 Score=129.20 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=24.3
Q ss_pred CCCcEEEcccCCCCc----cchhhhcCCCCCCEEeccCCcCcc
Q 044898 215 PSVQYLSLSWNRLSG----PVDRLLSRLDQLNYLDLSLNQFNG 253 (396)
Q Consensus 215 ~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~ 253 (396)
++|+.|+|++|.++. .++..+...++|++|+|++|.+++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 456666666666653 233444666777777777777663
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.24 E-value=6e-10 Score=105.54 Aligned_cols=278 Identities=11% Similarity=0.008 Sum_probs=168.4
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcC---------------
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFV--------------- 134 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--------------- 134 (396)
.++++.+.. +++..-..+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+--
T Consensus 72 ~L~~i~lp~------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 72 KVTEIKIPS------TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TEEEEECCT------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred CceEEEeCC------CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 677777762 344444557777888888888643 5544456677777777666543311
Q ss_pred ------ccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcc
Q 044898 135 ------SGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSG 206 (396)
Q Consensus 135 ------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~ 206 (396)
......+|.++++|+.+.+..+..+ .....|.++.+|+.+.+..+ ++......+. ..|+.+.+..+...
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~- 221 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY- 221 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-
T ss_pred ccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-
Confidence 1111234556666666666544322 34455666666666666554 3212222222 45555555444322
Q ss_pred cCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccCcCCCCCCCC
Q 044898 207 SLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAGPVQPPDQVT 285 (396)
Q Consensus 207 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~ 285 (396)
..........|+.+.+... ++......+..+..++.+.+..+... .....+... .++.+....+.+.. .....+.+
T Consensus 222 i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~ 298 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSS 298 (394)
T ss_dssp ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-TTTTTCTT
T ss_pred eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-cccccccc
Confidence 1111122366777777543 34344567778888888888776543 333334443 66666665554322 23346788
Q ss_pred cCEEEccCCCCcccCCcCC---cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhc
Q 044898 286 IPTVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLC 362 (396)
Q Consensus 286 L~~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 362 (396)
|+.+.+..+ ++......| .+|+.+++..+ ++.....+|.++ .+|+.+++..| ++.++..+|.++++|+.+.
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c---~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC---TSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC---TTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC---CCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 999988764 443333334 56888998754 665667788887 89999999877 8888899999999999998
Q ss_pred ccCc
Q 044898 363 LQYN 366 (396)
Q Consensus 363 l~~N 366 (396)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 8765
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.4e-11 Score=113.12 Aligned_cols=104 Identities=23% Similarity=0.186 Sum_probs=89.3
Q ss_pred CEEEccCC-cCccccchhhcCCCCCcEEeccC-CcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEcc
Q 044898 101 AELSIVPG-RVIGKLPQSLSQLKNLRFFAISR-NFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILC 178 (396)
Q Consensus 101 ~~L~l~~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (396)
..++.+++ .+++ +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 7875 787 99999999999996 99998888899999999999999999999888899999999999999
Q ss_pred CCcccccCCchhh-ccCCEEEccCCcCcc
Q 044898 179 HNKLSGSVPPFLS-HALTRLDLKHNDLSG 206 (396)
Q Consensus 179 ~n~l~~~~p~~~~-~~L~~L~l~~n~l~~ 206 (396)
+|++++..+..+. ..|+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999944433343 349999999998764
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.01 E-value=1e-08 Score=97.02 Aligned_cols=263 Identities=11% Similarity=0.013 Sum_probs=148.6
Q ss_pred ccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcC
Q 044898 92 PAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPE 171 (396)
Q Consensus 92 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 171 (396)
.+|.++.+|+.+.+.. .++..-..+|.++++|+.+++.++ ++.+....|.++.+|+.+.+..+ +......+|.+...
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 4688889999999974 476666778999999999999765 55455677888888888776544 22233334444433
Q ss_pred CcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCC-CCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccC
Q 044898 172 LSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDS-LPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSL 248 (396)
Q Consensus 172 L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 248 (396)
++......... ....++. .+|+.+.+..+... .....+ ...+|+.+.+..+ ++......|.++..|+.+.+..
T Consensus 142 ~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEGVTV--IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCccccc--cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 22222221111 1112222 45566555443221 111111 1245555555443 3333344555555555555444
Q ss_pred CcCc---------------------ccCCccccCc-ccCEEEccCCccc-CcCCCCCCCCcCEEEccCCCCcccCCcCCc
Q 044898 249 NQFN---------------------GNIPGRIFTF-PITNLQLQRNAFA-GPVQPPDQVTIPTVDLSHNMLSGQISPSFS 305 (396)
Q Consensus 249 n~l~---------------------~~~p~~~~~~-~L~~L~l~~n~l~-~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~ 305 (396)
+... ......+... .++.+.+..+... +.........++.+....+.+.........
T Consensus 218 ~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~ 297 (394)
T 4fs7_A 218 SLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS 297 (394)
T ss_dssp TCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred CceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccc
Confidence 3321 0111111111 3444444433221 111122445555555555444433334456
Q ss_pred ccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCc
Q 044898 306 TVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYN 366 (396)
Q Consensus 306 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 366 (396)
+|+.+.+..+ ++.....+|.++ .+|+.++|.++ ++.++..+|.++.+|+.+.+..+
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c---~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESC---TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTC---TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccc-cceechhhhcCC---CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 7888888765 665666778877 89999999754 88898999999999999998766
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=3.6e-10 Score=105.30 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCCCCCCCCce--------ecCccccCCCCCCEEEccCCcCc---------cccchhhcCCCCCcEEeccC
Q 044898 69 DKVIALNLGDPRAGSPGLTG--------RLDPAIGKLTSLAELSIVPGRVI---------GKLPQSLSQLKNLRFFAISR 131 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~--------~l~~~~~~l~~L~~L~l~~n~l~---------~~~p~~l~~l~~L~~L~L~~ 131 (396)
.+|+.|.+... +..| .+..++.++++|+.|.+...... +.+...+..+|+|+.|++++
T Consensus 107 ~~v~~L~lg~~-----~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g 181 (362)
T 2ra8_A 107 PSLKQITIGXW-----GYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181 (362)
T ss_dssp GGCSEEEECCC-----CSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred hhcceEEEccc-----ccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence 46788888732 2221 12344667889999988665331 12445567788888888887
Q ss_pred CcCccccccccCCCCCCCEEEeecCcCCCCCCcccC--CCcCCcEEEcc
Q 044898 132 NFVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIG--TLPELSNVILC 178 (396)
Q Consensus 132 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~ 178 (396)
|.-. .++. + .+++|++|++..+.+.......+. .+|+|+.|+|+
T Consensus 182 ~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 182 TNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 7311 2233 3 378888888888877533223332 67888888875
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=7.4e-08 Score=91.07 Aligned_cols=113 Identities=19% Similarity=0.105 Sum_probs=58.9
Q ss_pred CceecCccccCCCCCCEEEccCCc---CccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeecCcCCCCC
Q 044898 86 LTGRLDPAIGKLTSLAELSIVPGR---VIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSYNQLTGAI 162 (396)
Q Consensus 86 l~~~l~~~~~~l~~L~~L~l~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 162 (396)
++..-..+|.++++|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+.+..+. ....
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~ 152 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVA 152 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEEC
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeec
Confidence 333334456666666666665542 44444455666666666665544 333444556666667776665432 2233
Q ss_pred CcccCCCcCCcEEEccCCcccccCCchhh-ccCCEEEccC
Q 044898 163 PQSIGTLPELSNVILCHNKLSGSVPPFLS-HALTRLDLKH 201 (396)
Q Consensus 163 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~L~~L~l~~ 201 (396)
...|..+..|+.+.+..+ +......++. ..|+.+.+..
T Consensus 153 ~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT
T ss_pred ccceecccccccccccce-eeEeccccccccceeEEEECC
Confidence 445666666666666544 2212222222 4455555543
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.82 E-value=2.7e-07 Score=87.20 Aligned_cols=266 Identities=11% Similarity=0.102 Sum_probs=166.8
Q ss_pred ccccCCC-CCCEEEccCCcCccccchhhcCCCCCcEEeccCCc---CccccccccCCCCCCCEEEeecCcCCCCCCcccC
Q 044898 92 PAIGKLT-SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNF---VSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIG 167 (396)
Q Consensus 92 ~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 167 (396)
.+|.+.. .|+.+.+.. .++..-..+|.++.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.....+|.
T Consensus 57 ~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4576664 589999874 4776677889999999999998764 66556678888999998877655 4435556788
Q ss_pred CCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEe
Q 044898 168 TLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLD 245 (396)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 245 (396)
.+.+|+.+.+..+... .....+. .+|+.+.+..+ +.......+....|+.+.+..+ ++......|..+..++...
T Consensus 135 ~c~~L~~i~lp~~~~~-I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTS-VADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred hhcccccccccceeee-ecccceecccccccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhccccceec
Confidence 9999999999755322 3333333 67888888765 3322222233367888887654 2334445666777776665
Q ss_pred ccCCcCcc----------------------------cCCc--------cccCc-ccCEEEccCCccc-CcCCCCCCCCcC
Q 044898 246 LSLNQFNG----------------------------NIPG--------RIFTF-PITNLQLQRNAFA-GPVQPPDQVTIP 287 (396)
Q Consensus 246 l~~n~l~~----------------------------~~p~--------~~~~~-~L~~L~l~~n~l~-~~~~~~~~~~L~ 287 (396)
...+.... .+|. .+... .|+.+.+..+..+ +......+.+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQ 291 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccc
Confidence 54433220 0111 11111 3455554433221 112222556677
Q ss_pred EEEccCCCCcccCCcCC---cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhccc
Q 044898 288 TVDLSHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQ 364 (396)
Q Consensus 288 ~L~ls~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 364 (396)
.+.+. +.++......| .+|+.+++..+ ++.....+|.++ .+|+.+.+..+ ++.++..+|.++.+|+.+++.
T Consensus 292 ~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C---~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 292 DIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC---EQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp EEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC---TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred cccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC---CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 77775 33433222333 46888888754 554566677776 78888888644 777888888888888888888
Q ss_pred CccC
Q 044898 365 YNCM 368 (396)
Q Consensus 365 ~N~l 368 (396)
++..
T Consensus 366 ~~~~ 369 (394)
T 4gt6_A 366 GSRS 369 (394)
T ss_dssp SCHH
T ss_pred Ccee
Confidence 7643
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=8.5e-09 Score=96.02 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCCCEEEccCCcCcc-c-------cchhhcCCCCCcEEeccCCcCc---------cccccccCCCCCCCEEEeecCcCCC
Q 044898 98 TSLAELSIVPGRVIG-K-------LPQSLSQLKNLRFFAISRNFVS---------GEIPAALGQLRGLRTLDLSYNQLTG 160 (396)
Q Consensus 98 ~~L~~L~l~~n~l~~-~-------~p~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~ 160 (396)
..++.|.+......+ . +.++...+++|+.|.+.+.... +.+...+..+++|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456778877655442 1 2334556889999998765431 124455677889999999887311
Q ss_pred CCCcccCCCcCCcEEEccCCcccccCCchhh----ccCCEEEcc
Q 044898 161 AIPQSIGTLPELSNVILCHNKLSGSVPPFLS----HALTRLDLK 200 (396)
Q Consensus 161 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~~L~~L~l~ 200 (396)
.++. + .+++|+.|++..+.+.......+. ++|+.|+|+
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2333 3 378899999988876633222222 677777764
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=2.9e-09 Score=89.66 Aligned_cols=118 Identities=13% Similarity=0.168 Sum_probs=75.8
Q ss_pred ceecCccccCCCCCCEEEccCC-cCccc----cchhhcCCCCCcEEeccCCcCccc----cccccCCCCCCCEEEeecCc
Q 044898 87 TGRLDPAIGKLTSLAELSIVPG-RVIGK----LPQSLSQLKNLRFFAISRNFVSGE----IPAALGQLRGLRTLDLSYNQ 157 (396)
Q Consensus 87 ~~~l~~~~~~l~~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~ 157 (396)
...+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3344456677788888888888 77653 345566677888888888887643 23444556778888888888
Q ss_pred CCCC----CCcccCCCcCCcEEEc--cCCcccccCCchhh------ccCCEEEccCCcC
Q 044898 158 LTGA----IPQSIGTLPELSNVIL--CHNKLSGSVPPFLS------HALTRLDLKHNDL 204 (396)
Q Consensus 158 l~~~----~p~~~~~l~~L~~L~l--~~n~l~~~~p~~~~------~~L~~L~l~~n~l 204 (396)
|+.. +...+...+.|++|++ ++|.+.......+. ++|++|++++|.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 7732 3455666777888888 77777643322222 3455555555544
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=1.2e-05 Score=75.27 Aligned_cols=276 Identities=8% Similarity=0.108 Sum_probs=147.7
Q ss_pred CEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCC
Q 044898 70 KVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLR 149 (396)
Q Consensus 70 ~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 149 (396)
+++++.+. .+++..-..+|.++.+|+.+.+.. .++..-..+|.++ +|+.+.+..+ ++.+...+|.. .+|+
T Consensus 47 ~i~~v~ip------~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 47 RISEVRVN------SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GCSEEEEC------TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred CCEEEEeC------CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 46666665 245544455677777777777754 3555555666665 5666666543 33233344444 3677
Q ss_pred EEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCchhh--ccCCEEEccCCcCcccCCC-------------CCCC
Q 044898 150 TLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPPFLS--HALTRLDLKHNDLSGSLAP-------------DSLP 214 (396)
Q Consensus 150 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~-------------~~~~ 214 (396)
.+.+..+-.. .....|.+. +|+.+.+..+ ++......+. ..++.+.+..+........ ....
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 7777654221 222333332 3444444332 1111122221 3444444433221110000 0011
Q ss_pred CCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccC--cCCCCCCCCcCEEEc
Q 044898 215 PSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAG--PVQPPDQVTIPTVDL 291 (396)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l 291 (396)
..+..+.+... ........+....+|+.+.+..+ ++......+... .|+.+.+..+ ++. ......+.+|+.+.+
T Consensus 194 ~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 194 KTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 23333333222 22233345566667777776544 332223333333 6777776554 222 222335677888887
Q ss_pred cCCCCcccC---CcCCcccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCc
Q 044898 292 SHNMLSGQI---SPSFSTVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYN 366 (396)
Q Consensus 292 s~N~l~~~~---~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 366 (396)
..+ ++... .....+|+.+.+.++.++.....+|.++ .+|+.++|..+ ++.++..+|.++.+|+.+.+..+
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c---~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC---VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC---TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccc-ceeccccccccccccccccccccccceehhhhhcCC---CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 643 33222 2334578888998888886667788877 88999999754 88888888988888988888654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=1.3e-08 Score=85.66 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCEEEEEcCCC-CCCCCCCceecCccccCCCCCCEEEccCCcCccc----cchhhcCCCCCcEEeccCCcCccc----cc
Q 044898 69 DKVIALNLGDP-RAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGK----LPQSLSQLKNLRFFAISRNFVSGE----IP 139 (396)
Q Consensus 69 ~~v~~L~L~~~-~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p 139 (396)
..+++|+|+++ .++..+. ..+...+...+.|++|+|++|.+... +...+...+.|++|+|++|.|+.. +.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~-~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTL-KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHH-HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHH-HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 57999999964 3321111 12455677889999999999999864 455566778999999999999854 45
Q ss_pred cccCCCCCCCEEEe--ecCcCCCC----CCcccCCCcCCcEEEccCCccc
Q 044898 140 AALGQLRGLRTLDL--SYNQLTGA----IPQSIGTLPELSNVILCHNKLS 183 (396)
Q Consensus 140 ~~l~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 183 (396)
..+...++|++|++ ++|.++.. +...+...+.|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66778899999999 88999843 3445666789999999999986
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.49 E-value=1.8e-08 Score=79.31 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=53.7
Q ss_pred eEEeeccccc-ccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCccchhcccCccCCCCCCCCCCCCCCCC
Q 044898 309 NLYLNNNRFT-GQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPSSSSLCLQYNCMVPPVQMQCPLRSGKQ 383 (396)
Q Consensus 309 ~L~L~~N~l~-~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~c~c~~~~~~~ 383 (396)
.++.+++.++ ..+|..+. ++|++|+|++|+|+.++...|..+++|+.|+|++| ||.|+|.+.|+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N----P~~CdC~l~~l~~ 78 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN----PWRCDCRLVPLRA 78 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS----CCBCSGGGHHHHH
T ss_pred EEEeCCCCCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEEEecCC----CeeccCccHHHHH
Confidence 5666666665 35554432 57999999999999999999999999999999999 9999999987554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=3.6e-08 Score=87.32 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=41.0
Q ss_pred cCCCCCcEEeccCCcCcc--ccccccCCCCCCCEEEeecCcCCCCCCcccCCCc--CCcEEEccCCcccccCC
Q 044898 119 SQLKNLRFFAISRNFVSG--EIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLP--ELSNVILCHNKLSGSVP 187 (396)
Q Consensus 119 ~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p 187 (396)
.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++. ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 346677777777777765 3345555677777777777777643 2233333 66777777777665554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=1.9e-07 Score=82.69 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=65.7
Q ss_pred cCCCCCCEEEccCCcCcc--ccchhhcCCCCCcEEeccCCcCccccccccCCCC--CCCEEEeecCcCCCCCCc------
Q 044898 95 GKLTSLAELSIVPGRVIG--KLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLR--GLRTLDLSYNQLTGAIPQ------ 164 (396)
Q Consensus 95 ~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~------ 164 (396)
.++++|+.|+|++|.+++ .+|..+..+++|++|+|++|.+++. ..+..+. +|++|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 458899999999999998 4567788999999999999999865 3344444 999999999999876652
Q ss_pred -ccCCCcCCcEEE
Q 044898 165 -SIGTLPELSNVI 176 (396)
Q Consensus 165 -~~~~l~~L~~L~ 176 (396)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367788888886
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.33 E-value=6.6e-05 Score=70.18 Aligned_cols=269 Identities=9% Similarity=0.014 Sum_probs=165.7
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCcCccccchhhcCCCCCcEEeccCCcCccccccccCCCCCC
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGL 148 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 148 (396)
.++++++|.. +++..-..+|.+. .|+.+.+.. .++.....+|.. .+|+.+.+..+- .......|.+. +|
T Consensus 69 ~~L~~I~lp~------~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~-~~L~~i~lp~~~-~~i~~~~F~~~-~l 137 (379)
T 4h09_A 69 YNMTKVTVAS------TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQG-TDLDDFEFPGAT-TEIGNYIFYNS-SV 137 (379)
T ss_dssp TTCCEEEECT------TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTT-CCCSEEECCTTC-CEECTTTTTTC-CC
T ss_pred CCCCEEEeCC------cceEechhhhcCC-CCceEECCc-eeeEeccceecc-CCcccccCCCcc-ccccccccccc-ee
Confidence 3688888873 4554444567665 688877754 344444455655 479999998753 32444455544 67
Q ss_pred CEEEeecCcCCCCCCcccCCCcCCcEEEccCCcccccCCc------------hhh--ccCCEEEccCCcCcccCCCCCCC
Q 044898 149 RTLDLSYNQLTGAIPQSIGTLPELSNVILCHNKLSGSVPP------------FLS--HALTRLDLKHNDLSGSLAPDSLP 214 (396)
Q Consensus 149 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~------------~~~--~~L~~L~l~~n~l~~~~~~~~~~ 214 (396)
+.+.+..+ ++......|.....++...+..+........ .+. ..+..+.+......-........
T Consensus 138 ~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~ 216 (379)
T 4h09_A 138 KRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYG 216 (379)
T ss_dssp CEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTC
T ss_pred eeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccc
Confidence 77766554 3334556777888888887765543211110 010 23444443332221111111223
Q ss_pred CCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCcccCCccccCc-ccCEEEccCCcccC--cCCCCCCCCcCEEEc
Q 044898 215 PSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFNGNIPGRIFTF-PITNLQLQRNAFAG--PVQPPDQVTIPTVDL 291 (396)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l 291 (396)
..++.+.+..+ ++......|..+..|+.+.+..+ ++......+... .++.+.+..+ ++. .....++.+|+.+++
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 67888877654 45455667888899999988765 553333444444 7888887654 322 223347889999999
Q ss_pred cCCCCcccCCcCC---cccceEEeecccccccCchhHHhcccCCcccEEEccCCcCCCCCCCCCCCCCc
Q 044898 292 SHNMLSGQISPSF---STVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNFLTGIEINPTAEIPS 357 (396)
Q Consensus 292 s~N~l~~~~~~~~---~~L~~L~L~~N~l~~~~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 357 (396)
.++.++......| .+|+.+.+..+ ++.....+|.++ .+|+.+.+..+ ++.++..+|.+.+.
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C---~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC---KALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC---TTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC---CCCCEEEECCc-cCEEchhHhhCCCC
Confidence 9888775544444 46899999765 665667788887 89999999765 88888888876643
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=5e-07 Score=74.34 Aligned_cols=83 Identities=8% Similarity=0.118 Sum_probs=43.0
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCcEEeccCCc-CccccccccCCC----CCCCEEEeecCc-CCCCCCcccCCCcCC
Q 044898 99 SLAELSIVPGRVIGKLPQSLSQLKNLRFFAISRNF-VSGEIPAALGQL----RGLRTLDLSYNQ-LTGAIPQSIGTLPEL 172 (396)
Q Consensus 99 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L 172 (396)
.|+.||++++.++..--..+.++++|++|+|++|. +++..-..+..+ ++|++|++++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45556666555555444445556666666666653 443333334433 246666666653 543222344555666
Q ss_pred cEEEccCCc
Q 044898 173 SNVILCHNK 181 (396)
Q Consensus 173 ~~L~l~~n~ 181 (396)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666553
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=6.5e-06 Score=67.70 Aligned_cols=86 Identities=21% Similarity=0.134 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCCCCCCCCceecCccccCCCCCCEEEccCCc-CccccchhhcCC----CCCcEEeccCCc-Ccccccccc
Q 044898 69 DKVIALNLGDPRAGSPGLTGRLDPAIGKLTSLAELSIVPGR-VIGKLPQSLSQL----KNLRFFAISRNF-VSGEIPAAL 142 (396)
Q Consensus 69 ~~v~~L~L~~~~~~~~~l~~~l~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l 142 (396)
-++++||++++ .++..--..+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++...-..+
T Consensus 61 ~~L~~LDLs~~-----~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDS-----CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESC-----CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCC-----CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 47999999963 4554444567899999999999995 777655667765 479999999985 886655678
Q ss_pred CCCCCCCEEEeecCc-CC
Q 044898 143 GQLRGLRTLDLSYNQ-LT 159 (396)
Q Consensus 143 ~~l~~L~~L~L~~n~-l~ 159 (396)
..+++|++|+++++. ++
T Consensus 136 ~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCEEECCCCCCCC
Confidence 889999999999985 44
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.82 E-value=5.2e-06 Score=69.61 Aligned_cols=91 Identities=19% Similarity=0.167 Sum_probs=55.5
Q ss_pred cCccccCCCCCCEEEccCC-cCccc----cchhhcCCCCCcEEeccCCcCcccc----ccccCCCCCCCEEEeecCcCCC
Q 044898 90 LDPAIGKLTSLAELSIVPG-RVIGK----LPQSLSQLKNLRFFAISRNFVSGEI----PAALGQLRGLRTLDLSYNQLTG 160 (396)
Q Consensus 90 l~~~~~~l~~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~ 160 (396)
+...+.+-+.|++|+|++| .+... +-+.+..-+.|++|+|++|.+.... ...+..-+.|++|+|++|.|+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3344556677777887774 66532 3455666677777777777776432 2233344667777777777763
Q ss_pred C----CCcccCCCcCCcEEEccCC
Q 044898 161 A----IPQSIGTLPELSNVILCHN 180 (396)
Q Consensus 161 ~----~p~~~~~l~~L~~L~l~~n 180 (396)
. +.+++..-+.|++|+|++|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 2 2334555566777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=2.3e-05 Score=65.65 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCcCEEEccCCCCcccCCc----C---CcccceEEeecc---cccccCchhHHhccc-CCcccEEEccCCcC
Q 044898 284 VTIPTVDLSHNMLSGQISP----S---FSTVQNLYLNNN---RFTGQVPGSFVDHLL-DASIQILYLQHNFL 344 (396)
Q Consensus 284 ~~L~~L~ls~N~l~~~~~~----~---~~~L~~L~L~~N---~l~~~~~~~~~~~~~-~~~L~~L~L~~N~l 344 (396)
..|++|+|++|.|+..-.. . -..|++|+|++| .+.......+...+. .+.|++|+++.|.+
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4566666666666532111 1 124677777654 333222222222111 26777888776654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.15 E-value=0.0009 Score=52.15 Aligned_cols=57 Identities=28% Similarity=0.332 Sum_probs=45.4
Q ss_pred CEEEccCCcCc-ccCCCCCCCCCCcEEEcccCCCCccchhhhcCCCCCCEEeccCCcCc
Q 044898 195 TRLDLKHNDLS-GSLAPDSLPPSVQYLSLSWNRLSGPVDRLLSRLDQLNYLDLSLNQFN 252 (396)
Q Consensus 195 ~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (396)
..++.+++.++ ..+|. .++++++.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 24444 56678999999999999888888899999999999999885
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.50 E-value=13 Score=26.78 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=22.3
Q ss_pred CccccchhhcCCCCCcEEeccCCcCccccccccCCCCCCCEEEeec
Q 044898 110 VIGKLPQSLSQLKNLRFFAISRNFVSGEIPAALGQLRGLRTLDLSY 155 (396)
Q Consensus 110 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 155 (396)
++..-..+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333445555555555555543 2223344555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.12 E-value=39 Score=24.11 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=35.2
Q ss_pred cCccccccccCCCCCCCEEEeecCcCCCCCCcccCCCcCCcEEEccCC
Q 044898 133 FVSGEIPAALGQLRGLRTLDLSYNQLTGAIPQSIGTLPELSNVILCHN 180 (396)
Q Consensus 133 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 180 (396)
.++.+-...|.++.+|+.+.+-.+ ++..-..+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445555678888999999998775 44355678889999998888654
Done!