BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044899
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 16/251 (6%)
Query: 3 CFQGLFFCPDAASLLLHNFCIYHIDASGHELGADEIYSDFPLLNVDDLAEQVAEVLDFFG 62
CFQ LF D ++ NF H+DA G E GA + ++D LA+ + VL +
Sbjct: 41 CFQPLFQFEDMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLN 99
Query: 63 LEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEWLYNKVLMNLLYFYGM 122
++ +GV AGAYIL +A+ + + V GL+L++ A W +W +K+ G+
Sbjct: 100 FSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GL 152
Query: 123 CGVLKECLLQRYFSKEFRSGEHGAESDIIQACRRVLDQGQSL-NVMHFLQAINERHDLT- 180
+ E +L FS+E SG S++IQ R ++ +L N+ ++ + N R DL
Sbjct: 153 TSSIPEMILGHLFSQEELSG----NSELIQKYRNIITHAPNLDNIENYWNSYNNRRDLNF 208
Query: 181 --KGLKELQCKTLIFVGESSPFHTESLHMSATMGSKNCGLVEVQACGSLVTEEYPLAMLI 238
G L+C ++ VG+ +P + ++ + +++ G P +
Sbjct: 209 ERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTE 268
Query: 239 PIELFLMGFGY 249
+ FL G GY
Sbjct: 269 AFKYFLQGMGY 279
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 16/251 (6%)
Query: 3 CFQGLFFCPDAASLLLHNFCIYHIDASGHELGADEIYSDFPLLNVDDLAEQVAEVLDFFG 62
CFQ LF D ++ NF H+DA G E GA + ++D LA+ + VL +
Sbjct: 41 CFQPLFQFEDMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLN 99
Query: 63 LEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEWLYNKVLMNLLYFYGM 122
++ +GV AGAYIL +A+ + + V GL+L++ A W +W +K+ G+
Sbjct: 100 FSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GL 152
Query: 123 CGVLKECLLQRYFSKEFRSGEHGAESDIIQACRRVLDQGQSL-NVMHFLQAINERHDLT- 180
+ E +L FS+E SG S++IQ R ++ +L N+ + + N R DL
Sbjct: 153 TSSIPEMILGHLFSQEELSG----NSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNF 208
Query: 181 --KGLKELQCKTLIFVGESSPFHTESLHMSATMGSKNCGLVEVQACGSLVTEEYPLAMLI 238
G L+C ++ VG+ +P + ++ + +++ G P +
Sbjct: 209 ERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTE 268
Query: 239 PIELFLMGFGY 249
+ FL G GY
Sbjct: 269 AFKYFLQGMGY 279
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 16/251 (6%)
Query: 3 CFQGLFFCPDAASLLLHNFCIYHIDASGHELGADEIYSDFPLLNVDDLAEQVAEVLDFFG 62
CFQ LF D ++ NF H+DA G E GA + ++D LA+ + VL +
Sbjct: 41 CFQPLFQFEDMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLN 99
Query: 63 LEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEWLYNKVLMNLLYFYGM 122
++ +GV AGAYIL +A+ + + V GL+L++ A W +W +K+ G+
Sbjct: 100 FSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GL 152
Query: 123 CGVLKECLLQRYFSKEFRSGEHGAESDIIQACRRVLDQGQSL-NVMHFLQAINERHDLT- 180
+ E +L FS+E SG S++IQ R ++ +L N+ + + N R DL
Sbjct: 153 TSSIPEMILGHLFSQEELSG----NSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNF 208
Query: 181 --KGLKELQCKTLIFVGESSPFHTESLHMSATMGSKNCGLVEVQACGSLVTEEYPLAMLI 238
G L+C ++ VG+ +P + ++ + +++ G P +
Sbjct: 209 ERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTE 268
Query: 239 PIELFLMGFGY 249
+ FL G GY
Sbjct: 269 AFKYFLQGMGY 279
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 16/248 (6%)
Query: 3 CFQGLFFCPDAASLLLHNFCIYHIDASGHELGADEIYSDFPLLNVDDLAEQVAEVLDFFG 62
CFQ LF D ++ NF H+DA G E GA + ++D LA+ + +L +
Sbjct: 51 CFQPLFRFGDMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLN 109
Query: 63 LEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEWLYNKVLMNLLYFYGM 122
++ +GV AGAYIL+ +A+ + + V GL+L++ A W +W +K+ G+
Sbjct: 110 FSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GL 162
Query: 123 CGVLKECLLQRYFSKEFRSGEHGAESDIIQACRRVLDQGQSL-NVMHFLQAINERHDLT- 180
+ + +L FS+E SG S++IQ R ++ +L N+ + + N R DL
Sbjct: 163 TSSIPDMILGHLFSQEELSG----NSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNF 218
Query: 181 --KGLKELQCKTLIFVGESSPFHTESLHMSATMGSKNCGLVEVQACGSLVTEEYPLAMLI 238
G L+C ++ VG+ +P + ++ + +++ G P +
Sbjct: 219 ERGGETTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTE 278
Query: 239 PIELFLMG 246
+ FL G
Sbjct: 279 AFKYFLQG 286
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 49 DLAEQVAEVL--DFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTE 106
D + AE L FG EKV +G + G + +A+KYQ+ + GLI+ + P +
Sbjct: 80 DYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVK 139
Query: 107 WLYNKVLMNL-------LYFYGMCGVLKECLLQ---RYFSKE--FRSGEHGAESDIIQAC 154
+ N+++ L + YG G + Q YF + RS D
Sbjct: 140 EM-NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRS------EDWPPEV 192
Query: 155 RRVLDQGQSLNVMHFLQAINE--------RHDLTKGLKELQCKTLIFVGE 196
+ L+ + NV + NE D+T + ++ TLI VGE
Sbjct: 193 LKSLEYAERRNVFRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGE 242
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 49 DLAEQVAEVL--DFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTE 106
D + AE L FG EKV +G + G + +A+KYQ+ + GLI+ + P +
Sbjct: 80 DYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVK 139
Query: 107 WLYNKVLMNL-------LYFYGMCGVLKECLLQ---RYFSKE--FRSGEHGAESDIIQAC 154
+ N+++ L + YG G + Q YF + RS D
Sbjct: 140 EM-NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRS------EDWPPEV 192
Query: 155 RRVLDQGQSLNVMHFLQAINE--------RHDLTKGLKELQCKTLIFVGE 196
+ L+ + NV + NE D+T + ++ TLI VGE
Sbjct: 193 LKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGE 242
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 49 DLAEQVAEVL--DFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTE 106
D + AE L FG EKV +G + G + +A+KYQ+ + GLI+ + P +
Sbjct: 80 DYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVK 139
Query: 107 WLYNKVLMNL-------LYFYGMCGVLKECLLQ---RYFSKE--FRSGEHGAESDIIQAC 154
+ N+++ L + YG G + Q YF + RS D
Sbjct: 140 EM-NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRS------EDWPPEV 192
Query: 155 RRVLDQGQSLNVMHFLQAINE--------RHDLTKGLKELQCKTLIFVGE 196
+ L+ + NV + NE D+T + ++ TLI VGE
Sbjct: 193 LKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGE 242
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 49 DLAEQVAEVL--DFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTE 106
D + AE L FG EKV +G + G + +A+KYQ+ + GLI+ + P +
Sbjct: 80 DYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVK 139
Query: 107 WLYNKVLMNL-------LYFYGMCGVLKECLLQ---RYFSKE--FRSGEHGAESDIIQAC 154
+ N+++ L + YG G + Q YF + RS D
Sbjct: 140 EM-NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRS------EDWPPEV 192
Query: 155 RRVLDQGQSLNVMHFLQAINE--------RHDLTKGLKELQCKTLIFVGE 196
+ L+ + NV + NE D+T + ++ TLI VGE
Sbjct: 193 LKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGE 242
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 40 SDFPLLNVDDLAEQVAEVLDFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPI 98
+D ++D A+ A +LD G+EK +G A +L F KY +RV+ + PI
Sbjct: 75 NDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 133
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 29/170 (17%)
Query: 49 DLAEQVAEVL--DFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTE 106
D + AE L FG EKV +G G + +A+KYQ+ + GLI+ + P +
Sbjct: 80 DYGVEEAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVK 139
Query: 107 WLYNKVLMNL-------LYFYGMCGVLKECLLQ---RYFSKE--FRSGEHGAESDIIQAC 154
+ N+++ L + YG G + Q YF + RS D
Sbjct: 140 EM-NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRS------EDWPPEV 192
Query: 155 RRVLDQGQSLNVMHFLQAINE--------RHDLTKGLKELQCKTLIFVGE 196
+ L+ + NV + NE D+T + ++ TLI VGE
Sbjct: 193 LKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGE 242
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 49 DLAEQVAEVL--DFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTE 106
D + AE L FG EKV +G + G + +A+KYQ+ + GLI+ + P +
Sbjct: 80 DYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVK 139
Query: 107 WLYNKVLMNL-------LYFYGMCGVLKECLLQ---RYFSKE--FRSGEHGAESDIIQAC 154
+ N+++ L + YG G + Q YF + RS D
Sbjct: 140 EM-NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRS------EDWPPEV 192
Query: 155 RRVLDQGQSLNVMHFLQAINE--------RHDLTKGLKELQCKTLIFVGE 196
+ L+ + NV + N+ D+T + ++ TLI VGE
Sbjct: 193 LKSLEYAERRNVYRIMNGPNQFTITGTIKDWDITDKISAIKIPTLITVGE 242
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 29/170 (17%)
Query: 49 DLAEQVAEVL--DFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTE 106
D + AE L FG EKV G + G + +A+KYQ+ + GLI+ + P T
Sbjct: 80 DYGVEEAEALRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP-LTV 138
Query: 107 WLYNKVLMNL-------LYFYGMCGVLKECLLQ---RYFSKE--FRSGEHGAESDIIQAC 154
N+++ L + YG G + Q YF + RS D
Sbjct: 139 KEXNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRS------EDWPPEV 192
Query: 155 RRVLDQGQSLNVMHFLQAINE--------RHDLTKGLKELQCKTLIFVGE 196
+ L+ + NV NE D+T + ++ TLI VGE
Sbjct: 193 LKSLEYAERRNVYRIXNGPNEFTITGTIKDWDITDKISAIKIPTLITVGE 242
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEW 141
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 33 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 92
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 93 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEW 138
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEW 141
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEW 141
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAV 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEW 141
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEW 141
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 145 GAESDIIQACRRVLDQGQSLNVMHFLQAINERHDLTKGLKELQCKTLIFVGESSP 199
G + D Q+ +R++D+ +L + + A NE D ++ C ++ VG ++P
Sbjct: 178 GGDGDCSQSSQRIIDKTTNLGALIVIAAGNENQDASRTWPS-SCNNVLSVGATTP 231
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEW 141
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 33 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 92
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 93 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEW 138
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEW 107
GLE+V+ + G+ + +A + ERV G+ + I P+W EW
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEW 141
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 50 LAEQVAEVLDFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPI 98
LA +L+ G+ + +G + G + T +A+ Y +V L+LV+PI
Sbjct: 100 LAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEWLYNKV 112
GLE+V+ + G+ + +A + ERV G+ + I P+W E+ + +V
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEFHHTEV 146
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 7 LFFCPDAASLLLHNFCIYHIDASGHELGADEI---YSDFPLLN--VDDLAEQVAEVLDFF 61
LF + S L I H+ S + D I SD P L+ DD + ++
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 62 GLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEWLYNKV 112
GLE+V+ + G+ + +A + ERV G+ + I P+W E+ + +V
Sbjct: 96 GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEFHHTEV 146
>pdb|3I1I|A Chain A, X-Ray Crystal Structure Of Homoserine O-Acetyltransferase
From Bacillus Anthracis
pdb|3I1I|B Chain B, X-Ray Crystal Structure Of Homoserine O-Acetyltransferase
From Bacillus Anthracis
Length = 377
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 35 ADEIYSDFPLLNVDDLAEQVAEVLDFFGLEKVLCL-GVTAGAYILTLFAMKYQ---ERVL 90
DE DFP+ D+A E++ G+ ++ + G +AG I +A+ Y ER +
Sbjct: 117 GDEYAXDFPVFTFLDVARXQCELIKDXGIARLHAVXGPSAGGXIAQQWAVHYPHXVERXI 176
Query: 91 GLI 93
G+I
Sbjct: 177 GVI 179
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 49 DLAEQVAEVLDFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSP 97
D A + +V D G+EK +G++ G F ++ ERV ++SP
Sbjct: 119 DYANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSP 167
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 48 DDLAEQVAEVLDFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTE- 106
D + + ++D +EK +G + G + A++Y ERV ++L+ + TE
Sbjct: 79 DSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTEG 138
Query: 107 ----WLYNKVLMNL-----LYFYGMCGVLKECLLQRY 134
W Y + N+ ++ Y V E RY
Sbjct: 139 LNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRY 175
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 51 AEQVAEVLDFFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKAPSWTEWL-- 108
AE + + L G+ + + G + G + ++Y + V G+I V AP+W E L
Sbjct: 87 AEFIRDYLKANGVARSVIXGASXGGGXVIXTTLQYPDIVDGIIAV-----APAWVESLKG 141
Query: 109 -YNKVLMNLLYFYGMCGVLKECLLQRYFSKEFRSGEHGAESDIIQAC 154
K+ L +G K+ ++ SKE+ S G+ +I++
Sbjct: 142 DXKKIRQKTLLVWGS----KDHVVPIALSKEYASIISGSRLEIVEGS 184
>pdb|1IZL|A Chain A, Crystal Structure Of Photosystem Ii
pdb|1IZL|J Chain J, Crystal Structure Of Photosystem Ii
Length = 360
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 97 PICKAPSWTEWLYNKVLMNLLYFYGMCGVLKECLLQRYFSKEFRSG 142
PI +A S EWLYN L+ F+ + G C + R + +R G
Sbjct: 95 PIWEAASLDEWLYNGGPYQLIIFHFLLG--ASCYMGRQWELSYRLG 138
>pdb|1W5C|A Chain A, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|G Chain G, Photosystem Ii From Thermosynechococcus Elongatus
pdb|4IXQ|A Chain A, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|AA Chain a, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|A Chain A, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|AA Chain a, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 360
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 97 PICKAPSWTEWLYNKVLMNLLYFYGMCGVLKECLLQRYFSKEFRSG 142
PI +A S EWLYN L+ F+ + G C + R + +R G
Sbjct: 95 PIWEAASLDEWLYNGGPYQLIIFHFLLG--ASCYMGRQWELSYRLG 138
>pdb|3ARC|A Chain A, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
pdb|3ARC|AA Chain a, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
Length = 344
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 97 PICKAPSWTEWLYNKVLMNLLYFYGMCGVLKECLLQRYFSKEFRSG 142
PI +A S EWLYN L+ F+ + G C + R + +R G
Sbjct: 95 PIWEAASLDEWLYNGGPYQLIIFHFLLG--ASCYMGRQWELSYRLG 138
>pdb|1S5L|A Chain A, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1S5L|AA Chain a, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|2AXT|A Chain A, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|AA Chain a, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|A Chain A, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|A Chain A, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
Of 2). This File Contains Second Monomer Of Psii Dimer
pdb|3KZI|A Chain A, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|A Chain A, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File Contains
First Monomer Of Psii Dimer
pdb|3PRR|A Chain A, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File Contains
Second Monomer Of Psii Dimer
pdb|4FBY|A Chain A, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|G Chain G, Fs X-Ray Diffraction Of Photosystem Ii
Length = 344
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 97 PICKAPSWTEWLYNKVLMNLLYFYGMCGVLKECLLQRYFSKEFRSG 142
PI +A S EWLYN L+ F+ + G C + R + +R G
Sbjct: 95 PIWEAASLDEWLYNGGPYQLIIFHFLLG--ASCYMGRQWELSYRLG 138
>pdb|3A0B|A Chain A, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0B|AA Chain a, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0H|A Chain A, Crystal Structure Of I-Substituted Photosystem Ii Complex
pdb|3A0H|AA Chain a, Crystal Structure Of I-Substituted Photosystem Ii Complex
Length = 344
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 97 PICKAPSWTEWLYNKVLMNLLYFYGMCGVLKECLLQRYFSKEFRSG 142
PI +A S EWLYN L+ F+ + G C + R + +R G
Sbjct: 95 PIWEAASLDEWLYNGGPYQLIIFHFLLG--ASCYMGRQWELSYRLG 138
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 LLHNFCIYHIDASGHELGADEIYSDFPLLNVDDLAEQVAEVLDFFGLEKVLCLGVTAGAY 76
L +F + DA GH GA + + L E V E+LD + + LG++ G
Sbjct: 50 LTRHFRVLRYDARGH--GASSVPPG--PYTLARLGEDVLELLDALEVRRAHFLGLSLGGI 105
Query: 77 ILTLFAMKYQERVLGLILVSP---ICKAPSWTE 106
+ A+ +R+ L+L + + A W E
Sbjct: 106 VGQWLALHAPQRIERLVLANTSAWLGPAAQWDE 138
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 30 GHELGADEIYSDFPLLNVDDLAEQVAEVLDFFGLEKVLCLGVTAGAYILTLFAMKYQERV 89
G G + SDF + D L + D+ GL V LG + G I L A +
Sbjct: 99 GQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGL-PVFLLGHSMGGAIAILTAAERPGHF 157
Query: 90 LGLILVSPICKA 101
G++L+SP+ A
Sbjct: 158 AGMVLISPLVLA 169
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 30 GHELGADEIYSDFPLLNVDDLAEQVAEVLDFFGLEKVLCLGVTAGAYILTLFAMKYQERV 89
G G + SDF + D L + D+ GL V LG + G I L A +
Sbjct: 98 GQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGL-PVFLLGHSMGGAIAILTAAERPGHF 156
Query: 90 LGLILVSPICKA 101
G++L+SP+ A
Sbjct: 157 AGMVLISPLVLA 168
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 30 GHELGADEIYSDFPLLNVDDLAEQVAEVLDFFGLEKVLCLGVTAGAYILTLFAMKYQERV 89
G G + SDF + D L + D+ GL V LG + G I L A +
Sbjct: 81 GQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGL-PVFLLGHSMGGAIAILTAAERPGHF 139
Query: 90 LGLILVSPICKA 101
G++L+SP+ A
Sbjct: 140 AGMVLISPLVLA 151
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 48 DDLAEQVAEVLD-FFGLEKVLCLGVTAGAYILTLFAMKYQERVLGLILVSPICKA 101
D++ E + E ++ G + + G + G Y+ A +++ LG+ L P+ A
Sbjct: 72 DNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITA 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,117,697
Number of Sequences: 62578
Number of extensions: 303077
Number of successful extensions: 969
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 40
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)