BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044901
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 196/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 196/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 196/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 141/423 (33%), Positives = 195/423 (46%), Gaps = 25/423 (5%)
Query: 19 NKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVGWAYR 78
+K DNA+ + LV +IPG+ + YG L+ K ++ WV + Y
Sbjct: 15 DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 74
Query: 79 MSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXXXXRM 138
++FGE NF G N + + L A +G I V FQG FACIT R+
Sbjct: 75 LAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERI 132
Query: 139 NFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWV 198
F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG +Y +
Sbjct: 133 RFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVGAYLI 191
Query: 199 GPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCXXXXX 258
G R +E F P+N GFN G + A+LA +NT V
Sbjct: 192 GKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAI 251
Query: 259 XXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVL 318
GKPS++GA G I GLV +TPA G + AL +G+++G + + +L
Sbjct: 252 LGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTML 311
Query: 319 HNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQ 378
LLR VDDP VF H V G +G I+TG FA L +G A G+
Sbjct: 312 KR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFAEGVT 356
Query: 379 NGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEAVHGE 437
G Q+ VQL IA I + I L L V LR+ +++ G D HGE
Sbjct: 357 MG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGE 410
Query: 438 KAF 440
A+
Sbjct: 411 NAY 413
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 195/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+ ++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVEINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 195/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N G N G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 195/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG ACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSAACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 195/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+ ++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVFINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 195/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVFGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 195/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+ ++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVAINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 195/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVAGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/427 (32%), Positives = 194/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG ACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSAACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N G N G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF H V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 140/427 (32%), Positives = 194/427 (45%), Gaps = 25/427 (5%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ + LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++FGE NF G N + + L A +G I V FQG FACIT
Sbjct: 62 YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+ ++A +AG
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVAINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
GKPS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ +L LLR VDDP VF V G +G I+TG FA L +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVAGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
G+ G Q+ VQL IA I + I L L V LR+ +++ G D
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
HGE A+
Sbjct: 398 SHGENAY 404
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 129/386 (33%), Positives = 172/386 (44%), Gaps = 24/386 (6%)
Query: 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
P +K DNA+ LV +IPG+ + YG L+ K ++ WV
Sbjct: 2 PAVADKADNAFXXICTALVLFXTIPGIALFYGGLIRGKNVLSXLTQVTVTFALVCILWVV 61
Query: 75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
+ Y ++ GE NF G N + L A G I V FQG FACIT
Sbjct: 62 YGYSLASGEG-NNFFGNINWLXLKNIEL-TAVXGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
R+ F A ++FV +WLT SY A +W G LA G +DFAGG V+H++A +AG
Sbjct: 120 AERIRFPAVLIFVVVWLTLSYIPIAHXVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
+Y +G R +E F P+N GFN G + A+LA +NT V
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPXVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
G PS++GA G I GLV +TPA G + AL +G+++G +
Sbjct: 239 AAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
+ L LLR VDDP VF H V G +G I TG FA L +G A
Sbjct: 299 VTXLKR---LLR-VDDPCDVFGVHGVCGIVGCIXTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVI 400
G+ G Q+ VQL IA I
Sbjct: 344 EGVTXG------HQLLVQLESIAITI 363
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 180/426 (42%), Gaps = 35/426 (8%)
Query: 18 MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVGWAY 77
M+ G+ AW L + LV L +PG+ Y +V +K A+N W+ + Y
Sbjct: 1 MSDGNVAWILASTALVMLM-VPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59
Query: 78 RMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXXXXR 137
+SFG + +G N AL + G+ L + +Q +FA +T R
Sbjct: 60 SVSFGNDISGIIGGLNYALLSG-VKGEDLL-------FMMYQMMFAAVTIAILTSAIAER 111
Query: 138 MNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYW 197
+++L LWLT Y A +W GWLAKLG +DFAGG V+H+S+G A +
Sbjct: 112 AKVSSFILLSALWLTFVYAPFAHWLW-GGGWLAKLGALDFAGGMVVHISSGFAALAVAMT 170
Query: 198 VGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCXXXX 257
+G R+ + P++ GFNGG A + A A++ T+
Sbjct: 171 IGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTS-AAV 229
Query: 258 XXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMV 317
GKP +G V G I GL ITPAAG V A+ +GL++G V + M
Sbjct: 230 AGFVWMVIGWIKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-- 287
Query: 318 LHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGL 377
+ + +D+ + + H + G G + G A P++ Y GL +G
Sbjct: 288 ---DFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEV----------NGYAGLLFGN 334
Query: 378 QNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEAVHG 436
S QL+ +A T I+ + V LR+S E +G D + H
Sbjct: 335 PQLLVS--------QLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHE 386
Query: 437 EKAFAL 442
E A+ L
Sbjct: 387 EVAYTL 392
>pdb|3DHW|A Chain A, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|B Chain B, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|E Chain E, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|F Chain F, Crystal Structure Of Methionine Importer Metni
pdb|3TUI|A Chain A, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|B Chain B, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|E Chain E, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|F Chain F, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|A Chain A, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|B Chain B, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|E Chain E, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|F Chain F, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 217
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 298 WAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKL 357
W L M +SG + V+ +G+L V P + + T+ I+ F ++P +
Sbjct: 14 WETLAMTFVSG----FFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 69
Query: 358 CRLFYMLPDWEKYIGLAYGLQ 378
L +M+P +G + GLQ
Sbjct: 70 ILLVWMIPFTRVIVGTSIGLQ 90
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 293 GVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRL-VDDPMAVFHTHAVAGTLGGI 347
GVV +AL+ ++S S W + ++ +G+ +DP+AV THA L G+
Sbjct: 265 GVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLKLAGV 320
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 293 GVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRL-VDDPMAVFHTHAVAGTLGGI 347
GVV +AL+ ++S S W + ++ +G+ +DP+AV THA L G+
Sbjct: 265 GVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLKLAGV 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,458,463
Number of Sequences: 62578
Number of extensions: 511716
Number of successful extensions: 999
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 21
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)