Query 044901
Match_columns 478
No_of_seqs 146 out of 1347
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 5E-109 1E-113 844.8 36.5 403 18-443 1-405 (409)
2 KOG0682 Ammonia permease [Inor 100.0 5E-107 1E-111 838.2 34.3 419 10-443 20-445 (500)
3 PRK10666 ammonium transporter; 100.0 1E-103 3E-108 822.4 34.0 402 16-442 25-428 (428)
4 TIGR00836 amt ammonium transpo 100.0 1E-101 3E-106 804.8 36.6 396 23-440 1-403 (403)
5 TIGR03644 marine_trans_1 proba 100.0 6E-100 1E-104 791.5 35.2 382 21-443 3-404 (404)
6 PF00909 Ammonium_transp: Ammo 100.0 8.4E-94 1.8E-98 750.1 17.8 391 24-440 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 9E-53 2E-57 418.3 15.6 384 32-431 15-426 (442)
8 PF00909 Ammonium_transp: Ammo 86.4 6.2 0.00014 41.9 11.1 144 15-201 182-328 (399)
9 TIGR00836 amt ammonium transpo 75.0 74 0.0016 34.0 14.2 142 17-201 190-333 (403)
10 TIGR03644 marine_trans_1 proba 61.0 2.4E+02 0.0051 30.3 16.6 139 17-199 199-344 (404)
11 PRK11624 cdsA CDP-diglyceride 55.1 14 0.0003 37.5 4.0 83 256-339 163-258 (285)
12 PF01148 CTP_transf_1: Cytidyl 53.3 16 0.00035 35.4 4.0 67 272-339 161-236 (259)
13 PF06946 Phage_holin_5: Phage 49.1 67 0.0015 27.3 6.4 56 273-330 37-92 (93)
14 PRK10712 PTS system fructose-s 46.3 60 0.0013 36.3 7.4 104 212-333 236-344 (563)
15 PLN02594 phosphatidate cytidyl 42.0 15 0.00033 38.3 1.9 42 297-339 235-276 (342)
16 PF01891 CbiM: Cobalt uptake s 40.7 1.1E+02 0.0023 29.3 7.4 21 179-202 61-81 (205)
17 PF06570 DUF1129: Protein of u 39.0 91 0.002 29.9 6.6 110 213-330 77-205 (206)
18 PF04657 DUF606: Protein of un 37.2 2E+02 0.0044 25.8 8.2 87 296-421 29-115 (138)
19 PRK10666 ammonium transporter; 36.7 5.4E+02 0.012 27.8 12.6 139 18-200 215-356 (428)
20 COG0575 CdsA CDP-diglyceride s 34.1 37 0.00079 34.0 3.1 67 272-339 166-241 (265)
21 COG4120 ABC-type uncharacteriz 32.4 21 0.00045 35.9 1.0 46 281-330 42-87 (293)
22 KOG3796 Ammonium transporter R 30.8 2.8E+02 0.0061 29.5 8.8 107 247-357 85-199 (442)
23 PF14074 DUF4257: Protein of u 27.4 28 0.00061 28.8 0.8 58 252-309 4-74 (82)
24 PLN02953 phosphatidate cytidyl 27.1 71 0.0015 34.1 3.9 83 256-339 280-374 (403)
25 PRK10457 hypothetical protein; 26.7 83 0.0018 26.0 3.5 37 278-314 8-46 (82)
26 PF12270 Cyt_c_ox_IV: Cytochro 24.9 1.6E+02 0.0034 26.9 5.2 47 148-203 15-63 (137)
27 TIGR01427 PTS_IIC_fructo PTS s 24.3 3.5E+02 0.0076 28.3 8.5 51 264-320 82-132 (346)
28 COG5070 VRG4 Nucleotide-sugar 22.1 1.3E+02 0.0027 30.0 4.3 65 251-316 224-299 (309)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-109 Score=844.81 Aligned_cols=403 Identities=42% Similarity=0.717 Sum_probs=375.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcccccc
Q 044901 18 MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALD 97 (478)
Q Consensus 18 ~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~~~ 97 (478)
++..|+.|+|+|+.|| ++|||||+++|+|++|+||+.|+++|+++++++++++|+++||+++|+++.++|+|+....+.
T Consensus 1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~ 79 (409)
T COG0004 1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFL 79 (409)
T ss_pred CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhc
Confidence 3578999999999999 999999999999999999999999999999999999999999999999877889999765443
Q ss_pred hhhhccccc-CCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCcee
Q 044901 98 EKFLLGQAF-LGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIID 176 (478)
Q Consensus 98 ~~~~~~~~~-~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~D 176 (478)
.+...+... ..++|+.++++||++||++|++|++|+++||+|+++|++|+++|.+++|||++||+|+++|||.++|++|
T Consensus 80 ~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~~D 159 (409)
T COG0004 80 NGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALD 159 (409)
T ss_pred cCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCcee
Confidence 333222221 2468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeehhhhHHHHHHHHHhhCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHHHH
Q 044901 177 FAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTST 256 (478)
Q Consensus 177 faG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 256 (478)
||||+|||+.+|++||++++++|||+++.+++++|||++++++|+.|||+||||||+||++..+.++..+++||++|+++
T Consensus 160 FAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~ 239 (409)
T COG0004 160 FAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAA 239 (409)
T ss_pred cCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccccccccc
Q 044901 257 SLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFH 336 (478)
Q Consensus 257 g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 336 (478)
++++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|+++.++++|| +|+|||+|+++
T Consensus 240 g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~----l~~DD~ld~f~ 315 (409)
T COG0004 240 GALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK----LGVDDALDVFG 315 (409)
T ss_pred HHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999988876 89999999999
Q ss_pred ccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044901 337 THAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGL 416 (478)
Q Consensus 337 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~ 416 (478)
+||++|+||+|++|+|+++++.. .. |.+|+ +.+|++.|+.+++++.+|++++++++++++|+
T Consensus 316 vHGvgGi~G~i~~GiFa~~~~~~-------~~---G~~~~--------~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~ 377 (409)
T COG0004 316 VHGVGGIVGAILTGIFAAPAVGG-------GG---GLFYG--------GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKL 377 (409)
T ss_pred ccchhhHHHHHHHHHhcCccccc-------cC---ccccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999986410 11 55542 35999999999999999999999999999999
Q ss_pred hcCCCCChHHhhcC-Chhhhcccccccc
Q 044901 417 IVPLRLSKDELNIG-DEAVHGEKAFALV 443 (478)
Q Consensus 417 ~~~LRv~~e~E~~G-D~~~hg~~ay~~~ 443 (478)
+.+||+|+|||++| |.+||||++|++.
T Consensus 378 ~~gLRvs~eeE~~GlD~~~Hge~aY~~~ 405 (409)
T COG0004 378 IIGLRVSEEEELEGLDISEHGESAYSEE 405 (409)
T ss_pred ccCCCCCHHHHhhCCChHHhcccccccc
Confidence 99999999999999 9999999999864
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-107 Score=838.18 Aligned_cols=419 Identities=35% Similarity=0.580 Sum_probs=384.2
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-CCcc
Q 044901 10 PDEANPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGER-LVNF 88 (478)
Q Consensus 10 ~~~~~~~~~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~-~~~f 88 (478)
+.++.++.++..|+.|++.++++| |+|||||+|||+|+||+||++|+|+||+++.+++.++||++||+||||+. .++|
T Consensus 20 ~~~~~~~~y~~dn~~~l~sss~lv-F~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~GyslAFg~~~~n~F 98 (500)
T KOG0682|consen 20 LTKFTPNAYDLDNTAWLLSSSFLV-FTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYSLAFGDSPSNGF 98 (500)
T ss_pred ccccCcchhcCCchhhHHHHHHHH-HHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCCCCCc
Confidence 456677888888889999999999 99999999999999999999999999999999999999999999999987 7899
Q ss_pred ccCcccccchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcc
Q 044901 89 LGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGW 168 (478)
Q Consensus 89 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~Gw 168 (478)
||..+++...++..++...+.+|++.+++||++||+++++|++||++||+|+++|++|+++|.++||||++||+|+++||
T Consensus 99 iG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~~a~W~W~~~Gw 178 (500)
T KOG0682|consen 99 IGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCPVAHWVWSPNGW 178 (500)
T ss_pred eeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccccceeeecCCce
Confidence 99988543333332333233388999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceeccCceeehhhhHHHHHHHHHhhCCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhh-
Q 044901 169 LAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKD---REKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDAS- 244 (478)
Q Consensus 169 L~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~---~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~- 244 (478)
++++|++|||||++||+.||++||++++++|||++|+ ..+++|||++++++|++|||+||++||+||.+.++.+..
T Consensus 179 ~~~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWfGWl~FN~GS~~~i~~~~~~ 258 (500)
T KOG0682|consen 179 LYKLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWFGWLGFNGGSFYAINLRSWA 258 (500)
T ss_pred eeecceeeccCCceeEecccHHHHHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHHHHHccCCcccccccchhHH
Confidence 9999999999999999999999999999999999973 367899999999999999999999999999999888877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcc
Q 044901 245 LAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGL 324 (478)
Q Consensus 245 ~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~ 324 (478)
++++||+||++.|++||++++++.+||||+..+|||+|+|||||||+|++++||+|+++|+++|++|+...++.++
T Consensus 259 ~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~kL~~~---- 334 (500)
T KOG0682|consen 259 RAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANKLKER---- 334 (500)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988766554
Q ss_pred ccccccccccccccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 044901 325 LRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNI 404 (478)
Q Consensus 325 ~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~ 404 (478)
+|||||+|++++||++|+||.|++|+|+.+++...++..+ ++..|+++++ +++|+++|+++++++.+|++
T Consensus 335 -lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~--~~~~G~~~~~-------~~kqLg~Qla~i~ai~~ws~ 404 (500)
T KOG0682|consen 335 -LKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTI--ARISGLWMGH-------GFKQLGYQLAGILAIAAWSA 404 (500)
T ss_pred -hcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCc--cCCCceeecc-------hHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998766554432 2334777654 67999999999999999999
Q ss_pred HHHHHHHHHHHhhcC-CCCChHHhhcC-Chhhhcccccccc
Q 044901 405 ATTSIICWLIGLIVP-LRLSKDELNIG-DEAVHGEKAFALV 443 (478)
Q Consensus 405 ~~~~ii~~iLk~~~~-LRv~~e~E~~G-D~~~hg~~ay~~~ 443 (478)
+++.++++++||+.+ ||+|+|||+.| |..||||.+|+..
T Consensus 405 ~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~ 445 (500)
T KOG0682|consen 405 VVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYH 445 (500)
T ss_pred HHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchh
Confidence 999999999999988 99999999999 9999999999753
No 3
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=1.4e-103 Score=822.41 Aligned_cols=402 Identities=39% Similarity=0.634 Sum_probs=367.0
Q ss_pred ccccccchHHHHHHHHHHHHHHH-HHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCccc
Q 044901 16 EWMNKGDNAWQLTAATLVGLQSI-PGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNV 94 (478)
Q Consensus 16 ~~~~~~d~~w~l~~~~lV~~~m~-~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~ 94 (478)
+.+++.|+.|+|+|++|| |+|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++|+|+.++
T Consensus 25 ~~~~~~d~~w~l~~~~lV-~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~~-~~~iG~~~~ 102 (428)
T PRK10666 25 AVADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEG-NAFFGNFNW 102 (428)
T ss_pred cccccccHHHHHHHHHHH-HHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCCC-CCcccChHH
Confidence 357889999999999999 9998 9999999999999999999999999999999999999999999985 578887654
Q ss_pred ccchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCc
Q 044901 95 ALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGI 174 (478)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~ 174 (478)
++..+...++ ..+++|...+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.++|+
T Consensus 103 ~~~~~~~~~~-~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vahWvW~-~GwL~~lG~ 180 (428)
T PRK10666 103 LMLKNIELTA-VMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWG-GGLLASDGA 180 (428)
T ss_pred hhhcCCCccc-ccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhhheeC-chhHhhcch
Confidence 4332211111 13457888999999999999999999999999999999999999999999999999995 999999999
Q ss_pred eeccCceeehhhhHHHHHHHHHhhCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHH
Q 044901 175 IDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCT 254 (478)
Q Consensus 175 ~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~ 254 (478)
+|||||++||++||++||++++++|||+++.+++++|||++++++|+++||+||||||+||++..+.++.++++||++|+
T Consensus 181 ~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~~~~a~~a~~nT~la~ 260 (428)
T PRK10666 181 LDFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAANEIAALAFVNTVVAT 260 (428)
T ss_pred hhhcccchhHHhHHHHHHHHHHHhcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccchhhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccccccc
Q 044901 255 STSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAV 334 (478)
Q Consensus 255 a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v 334 (478)
++|+++|++++++.+||+|+.++|||+|||||+|||+|++++||+|+++|+++|++|+++.++++++ +|||||||+
T Consensus 261 a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~----~~iDD~~~a 336 (428)
T PRK10666 261 AAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRW----LRVDDPCDV 336 (428)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCcCc
Confidence 9999999999999999999999999999999999999999999999999999999999998877764 899999999
Q ss_pred ccccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044901 335 FHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLI 414 (478)
Q Consensus 335 ~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iL 414 (478)
+++||+||+||.+++|+|++++.... | |. +++. ..+|++.|+++++++++|+++.++++++++
T Consensus 337 ~~vHgv~Gi~G~l~~glfa~~~~~~~-----------~--~~--~g~~--~~~ql~~Ql~g~~~~~~~~~~~t~ii~~il 399 (428)
T PRK10666 337 FGVHGVCGIVGCILTGIFAASSLGGV-----------G--YA--EGVT--MGHQVLVQLESIAITIVWSGVVAFIGYKLA 399 (428)
T ss_pred cHhhhHhHHHHHHHHHHhhchhccCc-----------c--cc--Cccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754211 1 11 0110 137999999999999999999999999999
Q ss_pred HhhcCCCCChHHhhcC-Chhhhccccccc
Q 044901 415 GLIVPLRLSKDELNIG-DEAVHGEKAFAL 442 (478)
Q Consensus 415 k~~~~LRv~~e~E~~G-D~~~hg~~ay~~ 442 (478)
|++.+||+++|||+.| |.+||||++|++
T Consensus 400 ~~~~~lRvs~e~E~~GlD~~~hg~~ay~~ 428 (428)
T PRK10666 400 DLTVGLRVPEEQEREGLDVNSHGENAYNA 428 (428)
T ss_pred HhcccCcCCHHHHHhCCChhHhCccccCC
Confidence 9999999999999999 999999999963
No 4
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=1.4e-101 Score=804.77 Aligned_cols=396 Identities=39% Similarity=0.708 Sum_probs=363.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCCccccCcccccchhh
Q 044901 23 NAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGE--RLVNFLGKPNVALDEKF 100 (478)
Q Consensus 23 ~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~--~~~~fiG~~~~~~~~~~ 100 (478)
+.|+++|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||+ +.++|+|..++++. +.
T Consensus 1 ~~w~l~~~~lV-~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~~-~~ 78 (403)
T TIGR00836 1 TAWLLIAAALV-FFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGLK-NF 78 (403)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhhc-cC
Confidence 57999999999 9999999999999999999999999999999999999999999999998 45789998743322 11
Q ss_pred hccc--ccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCceecc
Q 044901 101 LLGQ--AFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFA 178 (478)
Q Consensus 101 ~~~~--~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~Dfa 178 (478)
..++ ...+.+|..++++||++||++|++|++|+++||+|+.+|++|+++|++++|||++||+|+++|||+++|++|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~~GwL~~lG~~DfA 158 (403)
T TIGR00836 79 LYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFA 158 (403)
T ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecCCchhhccCcchhc
Confidence 1111 11245788999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CceeehhhhHHHHHHHHHhhCCCCCCC--CCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHHHH
Q 044901 179 GGYVIHVSAGVAGFTASYWVGPRSDKD--REKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTST 256 (478)
Q Consensus 179 G~~vVH~~gG~~gL~~a~~lG~R~~~~--~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 256 (478)
||++||++||++||++++++|||++|+ +++++|||++++++|+++||+||||||+||++..+.++.++++||++|+++
T Consensus 159 G~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~ 238 (403)
T TIGR00836 159 GGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAA 238 (403)
T ss_pred CceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 678999999999999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccccccccc
Q 044901 257 SLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFH 336 (478)
Q Consensus 257 g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 336 (478)
|+++|++++++.+||+|+.+++||+|||||+|||+|++++||+|+++|+++|++|+++.+++++| +|||||||+++
T Consensus 239 g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~----~~iDD~~~~~~ 314 (403)
T TIGR00836 239 GGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKK----LKIDDPLDAFA 314 (403)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999876655 89999999999
Q ss_pred ccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044901 337 THAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGL 416 (478)
Q Consensus 337 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~ 416 (478)
+||+||+||++++|+|++++..... . |.++++ +.+|++.|++|++++++|+++.++++++++|+
T Consensus 315 vHg~~Gi~G~i~~glfa~~~~~~~~------~---g~~~~~-------~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~~ 378 (403)
T TIGR00836 315 VHGVGGIWGLIATGLFAAPKVGGVG------T---GGLLGG-------NGKQLGVQLIGIAAIIAWAFVVTFIILKILDK 378 (403)
T ss_pred hhhhhHHHHHHHHHHhccccccccc------C---CccccC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987643210 1 333432 35999999999999999999999999999999
Q ss_pred hcCCCCChHHhhcC-Chhhhccccc
Q 044901 417 IVPLRLSKDELNIG-DEAVHGEKAF 440 (478)
Q Consensus 417 ~~~LRv~~e~E~~G-D~~~hg~~ay 440 (478)
+.+||+++|||+.| |..||||++|
T Consensus 379 ~~~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 379 TIGLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred cccccCCHHHHHhCCChhhhCcccC
Confidence 99999999999999 9999999998
No 5
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=6e-100 Score=791.45 Aligned_cols=382 Identities=26% Similarity=0.441 Sum_probs=347.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC---CccccCcccccc
Q 044901 21 GDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERL---VNFLGKPNVALD 97 (478)
Q Consensus 21 ~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~---~~fiG~~~~~~~ 97 (478)
.|+.|+|+|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++. ++++|.. +.
T Consensus 3 ~d~~w~l~~~~LV-~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~f---~~ 78 (404)
T TIGR03644 3 LDTFYFLISGALV-MWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGSF---LL 78 (404)
T ss_pred ccHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchhh---hh
Confidence 5999999999999 999999999999999999999999999999999999999999999999863 3344321 11
Q ss_pred hhh--hcc---cc-cCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccc
Q 044901 98 EKF--LLG---QA-FLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAK 171 (478)
Q Consensus 98 ~~~--~~~---~~-~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~ 171 (478)
... ..+ +. ...++|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+| ++|||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W-~~GwL~~ 157 (404)
T TIGR03644 79 GADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTW-GGGWLDD 157 (404)
T ss_pred cccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhhee-CchHHhh
Confidence 100 000 11 1234677888999999999999999999999999999999999999999999999999 4799999
Q ss_pred cCceeccCceeehhhhHHHHHHHHHhhCCCCCCCC-----CCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccCh-----
Q 044901 172 LGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDR-----EKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAIST----- 241 (478)
Q Consensus 172 lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~-----~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~----- 241 (478)
+|++|||||++||++||++||+++++||||++|++ +++||||++++++|+++||+||||||+||++..+.
T Consensus 158 lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~~~~~~~~~ 237 (404)
T TIGR03644 158 LGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLALSDVADAN 237 (404)
T ss_pred cCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhcccccchH
Confidence 99999999999999999999999999999999852 35789999999999999999999999999876543
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhh
Q 044901 242 DASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNK 321 (478)
Q Consensus 242 ~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~ 321 (478)
...++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.++++|
T Consensus 238 ~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~- 316 (404)
T TIGR03644 238 AVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDK- 316 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3588999999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred hccccccccccccccccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHH
Q 044901 322 IGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVIC 401 (478)
Q Consensus 322 l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~ 401 (478)
+|||||||++++||+||+||++++|+|+.+ +|++.|++|++++++
T Consensus 317 ----~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~-------------------------------~~l~~Ql~g~~~~~~ 361 (404)
T TIGR03644 317 ----LKIDDPVGAISVHGVAGIWGTLVVPITNGD-------------------------------ASFGAQLIGAATIFA 361 (404)
T ss_pred ----CCCCCCcCchHhhhHHHHHHHHHHHHhccc-------------------------------hHHHHHHHHHHHHHH
Confidence 899999999999999999999999999521 689999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHhhcC-Chhhhcccccccc
Q 044901 402 LNIATTSIICWLIGLIVPLRLSKDELNIG-DEAVHGEKAFALV 443 (478)
Q Consensus 402 ~s~~~~~ii~~iLk~~~~LRv~~e~E~~G-D~~~hg~~ay~~~ 443 (478)
|+++.++++++++|++.+||+++|+|++| |.+||||++||++
T Consensus 362 ~~~~~s~~~~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~e~ 404 (404)
T TIGR03644 362 WVFVTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYPEF 404 (404)
T ss_pred HHHHHHHHHHHHHHhcccccCCHHHHHcCCCHHHhCcccCCCC
Confidence 99999999999999999999999999999 9999999999863
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=8.4e-94 Score=750.10 Aligned_cols=391 Identities=37% Similarity=0.666 Sum_probs=341.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCccccCcccccchhhh
Q 044901 24 AWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGER--LVNFLGKPNVALDEKFL 101 (478)
Q Consensus 24 ~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~--~~~fiG~~~~~~~~~~~ 101 (478)
+|+++|+++| ++||+||+++|+|.+|+||+.|+++|+++++++++++|+++||+++|+++ .++++|+.....
T Consensus 1 ~w~l~~~~lv-~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~----- 74 (399)
T PF00909_consen 1 AWLLLCAFLV-FLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSA----- 74 (399)
T ss_dssp HHHHHHHHHH-HHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHH-----
T ss_pred CHHHHHHHHH-HHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeecccccc-----
Confidence 5999999999 99999999999999999999999999999999999999999999999998 456666632111
Q ss_pred cccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCce-eccCc
Q 044901 102 LGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGII-DFAGG 180 (478)
Q Consensus 102 ~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~-DfaG~ 180 (478)
...+...+|...+++||++||+++++|++|+++||+|+.+|++++++|+.++||+++||+|+++|||.++|++ ||+||
T Consensus 75 -~~~~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~Gwl~~~g~~~DfaG~ 153 (399)
T PF00909_consen 75 -FGFQWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGENGWLAQLGFLIDFAGS 153 (399)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHCHHHHHCCHH--TT-T
T ss_pred -ccchhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecchhhccCccCCCCccc
Confidence 0111224567788999999999999999999999999999999999999999999999999889999999999 99999
Q ss_pred eeehhhhHHHHHHHHHhhCCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhh-HHHHHHHHHHH
Q 044901 181 YVIHVSAGVAGFTASYWVGPRSDKD---REKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASL-AILNTHVCTST 256 (478)
Q Consensus 181 ~vVH~~gG~~gL~~a~~lG~R~~~~---~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~-a~~NT~la~a~ 256 (478)
++||++||++||++++++|||++|+ +++++|||++++++|+++||+||+|||+||++..++.+.. +++||++|+++
T Consensus 154 ~vVH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~ 233 (399)
T PF00909_consen 154 GVVHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAAA 233 (399)
T ss_dssp TTTHHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHH
T ss_pred eeeehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHHH
Confidence 9999999999999999999999996 6788999999999999999999999999999998887776 99999999999
Q ss_pred HHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccccccccc
Q 044901 257 SLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFH 336 (478)
Q Consensus 257 g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~ 336 (478)
|+++|++++++.+||+|+.+++||+|||+|||||+|++++||+|+++|+++|++|+++.+++++| +|||||||+++
T Consensus 234 g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~----~~iDD~~~~~~ 309 (399)
T PF00909_consen 234 GGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKR----LKIDDPVGAFA 309 (399)
T ss_dssp HHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHH----HTS-HTTGHHH
T ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccce----eEeccccceEe
Confidence 99999999999999999999999999999999999999999999999999999999999855555 89999999999
Q ss_pred ccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044901 337 THAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGL 416 (478)
Q Consensus 337 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~ 416 (478)
+||+||+||++++|+|+.++.... +. ..+++++ +.+|++.|++++++++.|++++++++++++|+
T Consensus 310 vHg~~Gi~G~i~~glfa~~~~~~~----~~---~~~~~~~--------~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~ 374 (399)
T PF00909_consen 310 VHGVGGIWGTILTGLFASPEVNYS----DG---YGGLFYG--------NGRQLGIQLLGIVVILAWSFVVSYIIFKILKK 374 (399)
T ss_dssp HCHHHHHHHHHHHHHHCCCHHCSS-----S---STTHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccHHHHHHHHHHHhccccccc----cc---cccccCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875410 11 1255554 34899999999999999999999999999999
Q ss_pred hcCCCCChHHhhcC-Chhhhccccc
Q 044901 417 IVPLRLSKDELNIG-DEAVHGEKAF 440 (478)
Q Consensus 417 ~~~LRv~~e~E~~G-D~~~hg~~ay 440 (478)
+.+||+++|+|+.| |.+||||+||
T Consensus 375 ~~~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 375 FGGLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp HT-SB--HHHHHH-HHHHHHS--SB
T ss_pred ccccCCCHHHHhhCCCHHHhCcCcC
Confidence 99999999999999 9999999999
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=9e-53 Score=418.29 Aligned_cols=384 Identities=20% Similarity=0.293 Sum_probs=314.6
Q ss_pred HHHHHHHHHHHhhhhccccch----------hHHHHHHHHHHHHHHH-HHHHHHhhhhhhccCCCCccccCccccc----
Q 044901 32 LVGLQSIPGLVILYGSLVHKK----------WAINSAFMAFYAFAMV-FVCWVGWAYRMSFGERLVNFLGKPNVAL---- 96 (478)
Q Consensus 32 lV~~~m~~Gf~lleaG~vr~k----------n~~~~l~~~~~~~~v~-~~~w~~~Gy~lafg~~~~~fiG~~~~~~---- 96 (478)
|+++++|.-|+++++-+||+. +..|.+...+..++++ ++++..+||.++|-++++ |.....+.+
T Consensus 15 l~~l~lq~~~ivLF~~fv~Yd~~al~~~t~~~~~~~~~~~Yp~fQDvhvMifiGfGFLmtflrRyg-fSsV~fnlllaA~ 93 (442)
T KOG3796|consen 15 LWALLLQAAFIVLFALFVHYDADALEWDTKRYDQKGLVASYPLFQDVHVMIFIGFGFLMTFLRRYG-FSSVGFNLLLAAL 93 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccchhhccccccceeehhhhhHHHHHHHHHHcc-chHHHHHHHHHHH
Confidence 344678888999999999994 3446677789999998 999999999999999873 433322221
Q ss_pred -------chhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccc
Q 044901 97 -------DEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWL 169 (478)
Q Consensus 97 -------~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL 169 (478)
..++ ....+++++...++.+..+.||+.++.|..||+.+|.++.|+++++ ++++.++..++|-+-
T Consensus 94 ~vQWaiL~~G~-~~~~~~gk~~i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~-~fEv~~~~~~e~v~~------ 165 (442)
T KOG3796|consen 94 GVQWAILLDGF-LSQFPGGKFVIGLESIILADFSAASVLISMGAVLGKVSPAQLLIMA-LFEVTAFGINEMVIS------ 165 (442)
T ss_pred HHHHHHHHHHH-HHhCCCCeEEEEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHH-HHHHHHHHHHHHHHH------
Confidence 1222 2333467777788899999999999999999999999999999995 778889998888753
Q ss_pred cccCceeccCceeehhhhHHHHHHHHHhhCCCCCC---CCCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhH
Q 044901 170 AKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDK---DREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLA 246 (478)
Q Consensus 170 ~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~---~~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a 246 (478)
+.+++.|.+|++.||.+|+++||++++++.|+..+ +|+....|++.++++||++||+.||+||+..+.. .+.+.||
T Consensus 166 n~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~~~-~~~r~rA 244 (442)
T KOG3796|consen 166 NIFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALARS-GDARHRA 244 (442)
T ss_pred HhccccccCCceEEEehhhhhhhhHhhhccCccccccccccCceecchHHHHHHHHHHHHhccccchhhhcC-chhhHHH
Confidence 57899999999999999999999999999887655 4466688999999999999999999999976543 4567999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCCCHhhhhhhhhccceeecCCCC-CcchHHHHHHHHhhhhhhhHHHHHHHhhhc
Q 044901 247 ILNTHVCTSTSLLTWLLLDTSF--YGKPSVIGAVQGMITGLVCITPAAG-VVQGWAALFMGLISGSVPWYTMMVLHNKIG 323 (478)
Q Consensus 247 ~~NT~la~a~g~l~~~~~~~~~--~~k~~~~~~~nG~LaGlVaita~a~-~v~p~~AliiG~iag~i~~~~~~~l~~~l~ 323 (478)
++||++|.|+|.+|++.++.+. .||.|+++++|.+|||.|||+.+|+ ..+||.|++||+|||++++++++++.|+++
T Consensus 245 i~NTy~slAa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~ 324 (442)
T KOG3796|consen 245 IFNTYLSLAASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLE 324 (442)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhc
Confidence 9999999999999999999874 6799999999999999999999999 889999999999999999999999999999
Q ss_pred cccccccccccccccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 044901 324 LLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLN 403 (478)
Q Consensus 324 ~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s 403 (478)
+++||+|+|++++.||+||++|.++...++.-.... .|+..- +...-+ -++ ++.. ..-.|...|+.|+.+++..+
T Consensus 325 ~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e-~yg~~l-~~ifp~-~~g-ng~~-~~~sQa~~Ql~gl~~~l~~A 399 (442)
T KOG3796|consen 325 RKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPE-SYGKGL-YHIFPM-IGG-NGHG-MATSQALYQLFGLLVTLVIA 399 (442)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHhhcchh-hccccc-ccccce-ecC-CCcc-chhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886322100 011000 000000 111 2211 24589999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHhhcCC
Q 044901 404 IATTSIICWLIGLIVPLRLSKDELNIGD 431 (478)
Q Consensus 404 ~~~~~ii~~iLk~~~~LRv~~e~E~~GD 431 (478)
.+.+++++.+||. ..+|.++|+|+..|
T Consensus 400 ~~gGlLtGllLkl-~~w~qp~d~~~~~D 426 (442)
T KOG3796|consen 400 LVGGLLTGLLLKL-KIWDQPSDDEYYDD 426 (442)
T ss_pred HHhhhhhhheeec-cccCCCChhhhccc
Confidence 9999999999993 34888888776543
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=86.41 E-value=6.2 Score=41.88 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=91.3
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH---HHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccC
Q 044901 15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAIN---SAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGK 91 (478)
Q Consensus 15 ~~~~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~---~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~ 91 (478)
++.++..|..+..+.+.++ ++-- .-+.+|.....|... ++++.+++.+.+.+.|..+.|-.. ++ .
T Consensus 182 ~~~~~~~s~~~~~lG~~lL-w~gW---~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk-~------ 249 (399)
T PF00909_consen 182 PNPIPPHSPPLAMLGTLLL-WFGW---FGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK-W------ 249 (399)
T ss_dssp TSS--HCHHHHHHHHHHHH-HHHH---HHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS--------
T ss_pred ccCCCCCcHHHhhhhHHHH-HHHh---cccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc-c------
Confidence 3445556778888888766 5544 445667776665554 456667888888888877755443 11 0
Q ss_pred cccccchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccc
Q 044901 92 PNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~ 171 (478)
+ ...+.+.. .+-.+.+.+-+.-+++.+-++..+ +++.++....+| ++.+
T Consensus 250 -~--------------------~~~~~nG~---laGlVaita~~~~v~p~~A~~iG~-iag~i~~~~~~~------l~~~ 298 (399)
T PF00909_consen 250 -S--------------------MVGICNGA---LAGLVAITAGAGYVTPWGALLIGA-IAGLISYFGVSW------LLKR 298 (399)
T ss_dssp ----------------------HHHHHHHH---HHHHHHHTTTTTTS-HHHHHHHHH-HHHHHHHHHHHH------HHHH
T ss_pred -c--------------------hhhhhhhh---hhhhhheecccCCCcHHHHHHhhh-hHhhhhhhheec------ccce
Confidence 0 11222333 333334455567788888888875 455555544443 4578
Q ss_pred cCceeccCceeehhhhHHHHHHHHHhhCCC
Q 044901 172 LGIIDFAGGYVIHVSAGVAGFTASYWVGPR 201 (478)
Q Consensus 172 lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R 201 (478)
++..|.-+.-.||..+|..|...+-+.-.+
T Consensus 299 ~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 299 LKIDDPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp HTS-HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred eEeccccceEeeeeccHHHHHHHHHHHhcc
Confidence 999999999999999999999998776544
No 9
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=75.03 E-value=74 Score=34.03 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=85.7
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCccc
Q 044901 17 WMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKK--WAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNV 94 (478)
Q Consensus 17 ~~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~k--n~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~ 94 (478)
.+...+..+.++.+.++ ++-- .-+.+|+...- .+..+.++.+++.+.+.+.|+++-|.. .++ . +
T Consensus 190 ~~~~~n~~~~~lGt~lL-w~gW---~gFN~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk-~-------~- 255 (403)
T TIGR00836 190 AIRPHNVPLVVLGTFIL-WFGW---FGFNAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGK-P-------T- 255 (403)
T ss_pred CCCCCCHHHHHHHHHHH-HHHH---hcccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-C-------C-
Confidence 34456678888888776 5544 44455655433 334566777888888888988776532 121 0 0
Q ss_pred ccchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCc
Q 044901 95 ALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGI 174 (478)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~ 174 (478)
+....=.+.+-.....+-++-.++..-++..++ +++++....++ ...++++
T Consensus 256 ----------------------~~~~~nG~LAGLVaita~a~~v~p~~A~viG~i-ag~~~~~~~~~------l~~~~~i 306 (403)
T TIGR00836 256 ----------------------LLGACNGILAGLVAITPGCGVVTPWGAIIIGLV-AGVLCYLAVSK------LKKKLKI 306 (403)
T ss_pred ----------------------HHHHHhhhhhhheeecCCCCCCCHHHHHHHHHH-HHHHHHHHHHH------HHHHcCC
Confidence 001111222233333344466777777777644 34444333221 2357899
Q ss_pred eeccCceeehhhhHHHHHHHHHhhCCC
Q 044901 175 IDFAGGYVIHVSAGVAGFTASYWVGPR 201 (478)
Q Consensus 175 ~DfaG~~vVH~~gG~~gL~~a~~lG~R 201 (478)
.|.-+...||..+|..|....-++.++
T Consensus 307 DD~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 307 DDPLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred CCCcccchhhhhhHHHHHHHHHHhccc
Confidence 999999999999999999888777543
No 10
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=60.96 E-value=2.4e+02 Score=30.28 Aligned_cols=139 Identities=14% Similarity=0.002 Sum_probs=85.1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhhhccc------cc-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccc
Q 044901 17 WMNKGDNAWQLTAATLVGLQSIPGLVILYGSLV------HK-KWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFL 89 (478)
Q Consensus 17 ~~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~v------r~-kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fi 89 (478)
.+...|..+.++.+.++ ++--+|| .+|+. ++ +.+..+.++..+..+.+.+.|.++-|.. +++-
T Consensus 199 ~~~~~n~~~~~lG~~iL-w~gW~gF---N~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk~----- 268 (404)
T TIGR03644 199 PIPGSNLPLATLGTFIL-WMGWFGF---NGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGKA----- 268 (404)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHhh---cchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC-----
Confidence 44456677888888877 6665555 33432 22 2234566667777777888888775532 2210
Q ss_pred cCcccccchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccc
Q 044901 90 GKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWL 169 (478)
Q Consensus 90 G~~~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL 169 (478)
+ ...+.+. +.+-....-+-..-.++.+-++..+ ++.+++..... ++
T Consensus 269 ---~--------------------~~~~~nG---~LAGLVaITa~~~~v~p~~A~iiG~-iag~v~~~~~~-------~~ 314 (404)
T TIGR03644 269 ---D--------------------LTMVLNG---ALAGLVAITAEPLTPSPLAATLIGA-VGGVIVVFSIV-------LL 314 (404)
T ss_pred ---C--------------------HHHHHHH---HHhhhhhhccccCCCCHHHHHHHHH-HHHHHHHHHHH-------HH
Confidence 0 0011122 2222222234446777888888864 45555554332 46
Q ss_pred cccCceeccCceeehhhhHHHHHHHHHhhC
Q 044901 170 AKLGIIDFAGGYVIHVSAGVAGFTASYWVG 199 (478)
Q Consensus 170 ~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG 199 (478)
.++++.|.-+...||..+|..|..++-+..
T Consensus 315 ~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 315 DKLKIDDPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred HhCCCCCCcCchHhhhHHHHHHHHHHHHhc
Confidence 788999999999999999999988876663
No 11
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=55.13 E-value=14 Score=37.53 Aligned_cols=83 Identities=13% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhcC-----CCCHhhhhhhhhccceeecCCCC--------CcchHHHHHHHHhhhhhhhHHHHHHHhhh
Q 044901 256 TSLLTWLLLDTSFYG-----KPSVIGAVQGMITGLVCITPAAG--------VVQGWAALFMGLISGSVPWYTMMVLHNKI 322 (478)
Q Consensus 256 ~g~l~~~~~~~~~~~-----k~~~~~~~nG~LaGlVaita~a~--------~v~p~~AliiG~iag~i~~~~~~~l~~~l 322 (478)
++=..+++.-+...| |.|+...-.|.++|+++.+..+. ..+++..++.|++.++...++- ..+..+
T Consensus 163 ~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GD-L~ES~l 241 (285)
T PRK11624 163 GADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGD-LTESMF 241 (285)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 344445555444333 35777778888887765543222 1356778889999988888875 356667
Q ss_pred ccccccccccccccccc
Q 044901 323 GLLRLVDDPMAVFHTHA 339 (478)
Q Consensus 323 ~~~l~IDD~~~v~~vHg 339 (478)
|++.++.|.-..+|=||
T Consensus 242 KR~~gVKDSG~llPGHG 258 (285)
T PRK11624 242 KREAGIKDSGHLIPGHG 258 (285)
T ss_pred hhccCCCCCcCcCCCcC
Confidence 88899999988888886
No 12
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=53.29 E-value=16 Score=35.40 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=48.8
Q ss_pred CCHhhhhhhhhccceeecCCCC-C--------cchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccccc
Q 044901 272 PSVIGAVQGMITGLVCITPAAG-V--------VQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHA 339 (478)
Q Consensus 272 ~~~~~~~nG~LaGlVaita~a~-~--------v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 339 (478)
.++.....|.++|.++....+- . .++|.+++++++++++..++-. .+..+|+..+|-|--+.+|=||
T Consensus 161 ~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gdl-~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 161 ISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGDL-FESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccccccccCcC
Confidence 4555566666666665543332 1 5789999999999999988764 4555777799999999998886
No 13
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=49.13 E-value=67 Score=27.29 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=37.3
Q ss_pred CHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccc
Q 044901 273 SVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDD 330 (478)
Q Consensus 273 ~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD 330 (478)
....+.-|++.|+++.--.- -.+++..+.-|.++|+..........||-+ +.+=||
T Consensus 37 PlIs~viGilLG~~~~~~~~-~~~l~~~~~aG~laGlAaTGL~e~~t~r~~-~~~e~~ 92 (93)
T PF06946_consen 37 PLISVVIGILLGAAAYPLTG-DGNLALMAWAGGLAGLAATGLFEQFTNRSK-KYGEDD 92 (93)
T ss_pred hHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHhhhhhhhHHHHHHhhhh-hcCcCC
Confidence 46678888888888742222 236666677799999888877777777633 234444
No 14
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=46.27 E-value=60 Score=36.29 Aligned_cols=104 Identities=18% Similarity=0.354 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHHHhhh-hhcCCCccccChhhhhHHHHHH-HHHHHHHHHHHHHHH---hhcCCCCHhhhhhhhhccce
Q 044901 212 NNIILMLAGAGLLWMGWS-GFNGGGPFAISTDASLAILNTH-VCTSTSLLTWLLLDT---SFYGKPSVIGAVQGMITGLV 286 (478)
Q Consensus 212 ~n~~~~~lGt~lLw~GW~-gFN~gs~~~~~~~~~~a~~NT~-la~a~g~l~~~~~~~---~~~~k~~~~~~~nG~LaGlV 286 (478)
|=+|+++.|.+++=++.. +.+. .. +...-...++++ =..+.+.+...+.-| -.-+|+ .+.-|.+.|++
T Consensus 236 ~mlP~vv~gGil~ai~~~~g~~~---~~-~~~~~~~~~~~~gg~~~~~lmvpvla~yia~sia~rp---glapg~i~g~~ 308 (563)
T PRK10712 236 YMLPMVVAGGLCIALSFAFGIEA---FK-EPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRP---GLTPGLIGGML 308 (563)
T ss_pred HHHHHHHHhHHHHHHHHHhCccc---cC-CccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCc---cchHHHHHHHH
Confidence 456888888888877643 2111 11 111122233332 112333333332222 234555 45788888988
Q ss_pred eecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccc
Q 044901 287 CITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMA 333 (478)
Q Consensus 287 aita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~ 333 (478)
|...+++++ ++++.|+++|- +.|+++++.|+-+.++
T Consensus 309 a~~~~~GFl---G~Ilag~lagy--------v~~~l~K~~~lP~~l~ 344 (563)
T PRK10712 309 AVSTGSGFI---GGIIAGFLAGY--------VAKLISTKLKLPQSME 344 (563)
T ss_pred HhcCCchHH---HHHHHHHHHHH--------HHHHHHHhccCcHHHH
Confidence 877665442 34555555553 3333333356666555
No 15
>PLN02594 phosphatidate cytidylyltransferase
Probab=41.97 E-value=15 Score=38.25 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccccc
Q 044901 297 GWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHA 339 (478)
Q Consensus 297 p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 339 (478)
.+.++++|++++++..++-. .+..+|+.+||-|--+.+|=||
T Consensus 235 ~~h~l~l~l~aSl~a~fGdl-faS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGF-FASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHccCCCcccCccCCCc
Confidence 68899999999999999854 4555777899999999999887
No 16
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=40.66 E-value=1.1e+02 Score=29.33 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=15.6
Q ss_pred CceeehhhhHHHHHHHHHhhCCCC
Q 044901 179 GGYVIHVSAGVAGFTASYWVGPRS 202 (478)
Q Consensus 179 G~~vVH~~gG~~gL~~a~~lG~R~ 202 (478)
++..+|..|.. ..++++||+.
T Consensus 61 ~g~s~Hllg~~---l~~l~lGp~~ 81 (205)
T PF01891_consen 61 GGLSVHLLGLT---LLTLMLGPWL 81 (205)
T ss_pred CCchHHHhHHH---HHHHHHhHHH
Confidence 66899998875 3567788773
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.00 E-value=91 Score=29.86 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHhhhhhcCCCccc--cChhhhhHHHHHHHHHHHHHHHHHHHHHhhc------CCCCHhh-hh-----
Q 044901 213 NIILMLAGAGLLWMGWSGFNGGGPFA--ISTDASLAILNTHVCTSTSLLTWLLLDTSFY------GKPSVIG-AV----- 278 (478)
Q Consensus 213 n~~~~~lGt~lLw~GW~gFN~gs~~~--~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~------~k~~~~~-~~----- 278 (478)
+.....+-..+++++.+++-.|.... .+......++++.+.+..+++....+.+..+ +|.+... +.
T Consensus 77 ~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~ 156 (206)
T PF06570_consen 77 NPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLA 156 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 45566677777777777655553321 1122222666767666666666555544332 2322111 11
Q ss_pred hhhhccc---ee-ecCCCC-CcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccc
Q 044901 279 QGMITGL---VC-ITPAAG-VVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDD 330 (478)
Q Consensus 279 nG~LaGl---Va-ita~a~-~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD 330 (478)
-....++ .+ +-+.-+ .++||..+++|+++-.+. ++++|| ++|.+
T Consensus 157 ~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~----~~lkkk----~~i~~ 205 (206)
T PF06570_consen 157 MVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALR----FYLKKK----YNITG 205 (206)
T ss_pred HHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHH----HHHHHH----hCCCC
Confidence 1111111 11 122223 778999998887766554 455554 66643
No 18
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=37.24 E-value=2e+02 Score=25.79 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=57.2
Q ss_pred chHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccccccchhhhhhhhhhccccccccccccCCCcccccceee
Q 044901 296 QGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAY 375 (478)
Q Consensus 296 ~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~ 375 (478)
+|+.|-.+-+..|.+.......+.++ .+.+.--++=..+..+|+.|.+.+..-
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~----~~~~~~~~~p~w~~lGG~lG~~~V~~~----------------------- 81 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGR----PSLASLSSVPWWAYLGGLLGVFFVLSN----------------------- 81 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcc----cccchhccCChHHhccHHHHHHHHHHH-----------------------
Confidence 37888888777777766665555543 133333345566777888877765531
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044901 376 GLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLR 421 (478)
Q Consensus 376 g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~~~~LR 421 (478)
-..++-+|...........=.+...++|.++.+.
T Consensus 82 ------------~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg 115 (138)
T PF04657_consen 82 ------------IILVPRLGAALTTILIVAGQLIASLLIDHFGLFG 115 (138)
T ss_pred ------------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 2344667777778888888888888899875543
No 19
>PRK10666 ammonium transporter; Provisional
Probab=36.66 E-value=5.4e+02 Score=27.82 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=79.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhccccchh--HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcccc
Q 044901 18 MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKW--AINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVA 95 (478)
Q Consensus 18 ~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn--~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~ 95 (478)
+++.|....++.++++ ++ |..-+.+|+....| +..+.+..+++.+.+.+.|.++-|. -.++- +
T Consensus 215 ~~~hn~~~~~lGt~lL-w~---GW~gFN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~-~~gk~--------~-- 279 (428)
T PRK10666 215 FKPHNLPMVFTGTAIL-YI---GWFGFNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWA-LRGKP--------S-- 279 (428)
T ss_pred CCCCCHHHHHHHHHHH-HH---HHHhccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC--------C--
Confidence 4444556666666655 44 45556677765443 3445566677777778888765442 11110 0
Q ss_pred cchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccc-ccCc
Q 044901 96 LDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLA-KLGI 174 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~-~lG~ 174 (478)
...+.+ .+.+-.....+-++=+++..-++..++ .++++....+ ++. ++++
T Consensus 280 ------------------~~~~~n---G~LaGLVaITa~a~~v~p~~A~iiG~v-ag~v~~~~~~-------~l~~~~~i 330 (428)
T PRK10666 280 ------------------LLGACS---GAIAGLVGVTPACGYVGVGGALIIGVV-AGLAGLWGVT-------MLKRWLRV 330 (428)
T ss_pred ------------------HHHHHH---HHhhhhhhcccccccCCHHHHHHHHHH-HHHHHHHHHH-------HHHhcCCC
Confidence 000111 112222222334456777777777643 4445443222 233 4789
Q ss_pred eeccCceeehhhhHHHHHHHHHhhCC
Q 044901 175 IDFAGGYVIHVSAGVAGFTASYWVGP 200 (478)
Q Consensus 175 ~DfaG~~vVH~~gG~~gL~~a~~lG~ 200 (478)
.|.-+...||..+|..|....-+...
T Consensus 331 DD~~~a~~vHgv~Gi~G~l~~glfa~ 356 (428)
T PRK10666 331 DDPCDVFGVHGVCGIVGCILTGIFAA 356 (428)
T ss_pred CCCcCccHhhhHhHHHHHHHHHHhhc
Confidence 99999999999999999888766653
No 20
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=34.15 E-value=37 Score=33.98 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=49.2
Q ss_pred CCHhhhhhhhhccceeecCCCCC---------cchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccccc
Q 044901 272 PSVIGAVQGMITGLVCITPAAGV---------VQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHA 339 (478)
Q Consensus 272 ~~~~~~~nG~LaGlVaita~a~~---------v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 339 (478)
.|+.-.+.|.+.|.+..+..+-. .+++..++++++.+++..++- ..+..+|+++|+-|--..+|=||
T Consensus 166 iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGD-L~eS~iKR~~gvKDsg~liPGHG 241 (265)
T COG0575 166 ISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGD-LFESYIKRLLGIKDSGWLIPGHG 241 (265)
T ss_pred CCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHccCCCCcCCCCCCcC
Confidence 67777788888876665444331 245888899999999888874 34555677799999888888776
No 21
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=32.39 E-value=21 Score=35.91 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=37.5
Q ss_pred hhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccc
Q 044901 281 MITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDD 330 (478)
Q Consensus 281 ~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD 330 (478)
.+.|.|+.+.-+.=++||.|.+++++||.+.-...-+++.| .||+|
T Consensus 42 pLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k----~kI~~ 87 (293)
T COG4120 42 PLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVK----FKILT 87 (293)
T ss_pred cchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 35677777777777899999999999999987777777776 78876
No 22
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=30.82 E-value=2.8e+02 Score=29.53 Aligned_cols=107 Identities=21% Similarity=0.124 Sum_probs=67.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhhcCCCC-----HhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHH
Q 044901 247 ILNTHVCTSTS---LLTWLLLDTSFYGKPS-----VIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVL 318 (478)
Q Consensus 247 ~~NT~la~a~g---~l~~~~~~~~~~~k~~-----~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l 318 (478)
-+|.++++.+= .+.==+++....+|++ +..+--.+.+=|++..+--+-++|-+=++.-++=-.+...--.++
T Consensus 85 ~fnlllaA~~vQWaiL~~G~~~~~~~gk~~i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~~~~~e~v~ 164 (442)
T KOG3796|consen 85 GFNLLLAALGVQWAILLDGFLSQFPGGKFVIGLESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTAFGINEMVI 164 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665531 1111122233346643 333333445556777788888888888887776554443333333
Q ss_pred Hhhhccccccccccccccccccchhhhhhhhhhcccccc
Q 044901 319 HNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKL 357 (478)
Q Consensus 319 ~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~ 357 (478)
.+ .+++||.-+...+|-++.-.|.-.+..+-.+..
T Consensus 165 ~n----~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~ 199 (442)
T KOG3796|consen 165 SN----IFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNL 199 (442)
T ss_pred HH----hccccccCCceEEEehhhhhhhhHhhhccCccc
Confidence 33 389999999999999999999998888876654
No 23
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=27.40 E-value=28 Score=28.84 Aligned_cols=58 Identities=9% Similarity=0.069 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-------------HhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhh
Q 044901 252 VCTSTSLLTWLLLDTSFYGKPS-------------VIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGS 309 (478)
Q Consensus 252 la~a~g~l~~~~~~~~~~~k~~-------------~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~ 309 (478)
+|...|+++.++-++..+||.. ..++.-|.+|++.++|...+.-+.+.-+.+.++||+
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 3556778888887755444321 356778888888888888887777777777777774
No 24
>PLN02953 phosphatidate cytidylyltransferase
Probab=27.08 E-value=71 Score=34.07 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcC----CCCHhhhhhhhhccceeecCCC--------CCcchHHHHHHHHhhhhhhhHHHHHHHhhhc
Q 044901 256 TSLLTWLLLDTSFYG----KPSVIGAVQGMITGLVCITPAA--------GVVQGWAALFMGLISGSVPWYTMMVLHNKIG 323 (478)
Q Consensus 256 ~g~l~~~~~~~~~~~----k~~~~~~~nG~LaGlVaita~a--------~~v~p~~AliiG~iag~i~~~~~~~l~~~l~ 323 (478)
++=+.+++.-+...| +.|+-....|.+.|+++....+ -...++.++++|++.++...++-. .+..+|
T Consensus 280 ~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~~~~~GDL-~eS~iK 358 (403)
T PLN02953 280 ATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFFGSVFGDL-TESMIK 358 (403)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhHH-HHHHHh
Confidence 344445555444333 2455455555544433321111 134566778999999988888753 455677
Q ss_pred cccccccccccccccc
Q 044901 324 LLRLVDDPMAVFHTHA 339 (478)
Q Consensus 324 ~~l~IDD~~~v~~vHg 339 (478)
+..+|.|--+.+|=||
T Consensus 359 R~~gVKDsG~liPGHG 374 (403)
T PLN02953 359 RDAGVKDSGSLIPGHG 374 (403)
T ss_pred HccCCCCccccCCCCC
Confidence 7899999887777776
No 25
>PRK10457 hypothetical protein; Provisional
Probab=26.71 E-value=83 Score=26.02 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=23.6
Q ss_pred hhhhhcccee--ecCCCCCcchHHHHHHHHhhhhhhhHH
Q 044901 278 VQGMITGLVC--ITPAAGVVQGWAALFMGLISGSVPWYT 314 (478)
Q Consensus 278 ~nG~LaGlVa--ita~a~~v~p~~AliiG~iag~i~~~~ 314 (478)
.-|.++|.+| +.|+-+-...+..+++|++++++-.+.
T Consensus 8 iiG~iaG~lA~~i~pg~~~~G~~~tiilGiiGA~iGg~l 46 (82)
T PRK10457 8 IFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWI 46 (82)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4455555555 455555556777888888888775543
No 26
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.93 E-value=1.6e+02 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHHHhhhcceeeeeEcCCccccccCceeccCceeehhhhHHHHHHHHHh--hCCCCC
Q 044901 148 PLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYW--VGPRSD 203 (478)
Q Consensus 148 ~l~~~~vYp~~ahwvW~~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~--lG~R~~ 203 (478)
++...++|-...+|.= . + .|.+|....-++++.+.+++.++ ..||++
T Consensus 15 f~~~~~vY~~~t~~~~-------~-~-~E~~Gt~aL~ls~~l~~mig~yl~~~~rr~~ 63 (137)
T PF12270_consen 15 FLVVAVVYGFWTKWSG-------D-G-GEWVGTVALVLSGGLALMIGFYLRFTARRIG 63 (137)
T ss_pred HHHHHHHHHHHHhccC-------C-C-CCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3455667766555421 1 1 19999988888888888777643 355554
No 27
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=24.33 E-value=3.5e+02 Score=28.31 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=32.1
Q ss_pred HHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHh
Q 044901 264 LDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHN 320 (478)
Q Consensus 264 ~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~ 320 (478)
+.|-.-+|+-. .-|.+.|+++....+++ .++++.|++++.+..+..|+++|
T Consensus 82 Ia~Sia~k~g~---~pG~i~G~~~~~~~~Gf---lGgII~gilag~~~~~lek~ikK 132 (346)
T TIGR01427 82 IAYSIADRPGL---APGMIAGLIANNFNSGF---LGGIIAGFLAGYVVKGLQKYIKK 132 (346)
T ss_pred HHHHHccCcCC---cHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445667643 33999999988766664 37777777777655444444443
No 28
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.14 E-value=1.3e+02 Score=30.01 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhh---c-----CCCCHhhhhh---hhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHH
Q 044901 251 HVCTSTSLLTWLLLDTSF---Y-----GKPSVIGAVQ---GMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMM 316 (478)
Q Consensus 251 ~la~a~g~l~~~~~~~~~---~-----~k~~~~~~~n---G~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~ 316 (478)
+++..-+++.++..++.- - -.+++++..| +++||+|--.+.-++.+. -++++|+++|++|-..-.
T Consensus 224 l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si-~sillGflsg~iYavaks 299 (309)
T COG5070 224 LMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSI-FSILLGFLSGAIYAVAKS 299 (309)
T ss_pred HHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444555666666555421 1 1246666665 789999999998887665 569999999999876543
Done!