Query 044901
Match_columns 478
No_of_seqs 146 out of 1347
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 5E-107 2E-111 841.1 30.8 393 18-444 1-394 (399)
2 1u7g_A Probable ammonium trans 100.0 5E-100 2E-104 786.4 29.8 381 17-422 4-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 1.6E-81 5.5E-86 650.6 26.4 343 35-443 25-378 (407)
4 3hd6_A Ammonium transporter RH 100.0 8.1E-79 2.8E-83 641.0 24.3 399 23-443 12-451 (490)
5 2b2h_A AMT-1, ammonium transpo 48.1 2.3E+02 0.0078 28.9 13.3 138 17-199 181-320 (399)
6 3b9w_A Ammonium transporter fa 45.1 1.1E+02 0.0038 31.3 10.4 143 18-199 172-315 (407)
7 3hd6_A Ammonium transporter RH 20.7 85 0.0029 33.0 4.7 73 279-355 135-207 (490)
8 1u7g_A Probable ammonium trans 17.1 7.8E+02 0.027 24.7 12.3 142 16-200 191-334 (385)
9 4ezc_A UREA transporter 1; mem 8.8 4E+02 0.014 26.9 5.5 71 275-355 64-134 (384)
10 2fd4_A Avirulence protein AVRP 7.3 2E+02 0.0068 23.7 2.0 32 421-452 22-57 (122)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=5e-107 Score=841.08 Aligned_cols=393 Identities=32% Similarity=0.611 Sum_probs=362.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcccccc
Q 044901 18 MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALD 97 (478)
Q Consensus 18 ~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~~~ 97 (478)
+|+.|+.|+|+|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++.++|+|+.++++.
T Consensus 1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~ 79 (399)
T 2b2h_A 1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALL 79 (399)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGG
T ss_pred CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhc
Confidence 3568999999999999 999999999999999999999999999999999999999999999999875689998554432
Q ss_pred hhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCceec
Q 044901 98 EKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDF 177 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~Df 177 (478)
.+. +..| .++++||++||++|++|++||++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++||
T Consensus 80 ~~~-------~~~~-~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~DF 150 (399)
T 2b2h_A 80 SGV-------KGED-LLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLAKLGALDF 150 (399)
T ss_dssp TTC-------CTHH-HHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHTTCCCS
T ss_pred cCC-------CCCc-hhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHHhcCCccc
Confidence 221 0112 6799999999999999999999999999999999999999999999999995 899999999999
Q ss_pred cCceeehhhhHHHHHHHHHhhCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHHHHH
Q 044901 178 AGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTS 257 (478)
Q Consensus 178 aG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g 257 (478)
|||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++..+..+.++++||++|+++|
T Consensus 151 AGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag 230 (399)
T 2b2h_A 151 AGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVA 230 (399)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccc
Q 044901 258 LLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHT 337 (478)
Q Consensus 258 ~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~v 337 (478)
+++|+++++++ ||+|+.+++||+|||||||||+|++++||+|++||+++|++|+++.+ +++| +|||||||++++
T Consensus 231 ~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~-l~~k----l~iDD~l~a~~v 304 (399)
T 2b2h_A 231 GFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMD-FRIK----KKIDESLDAWAI 304 (399)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHH-HHHH----TTCCCTTCHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH-HHHH----cCCCCCCCceec
Confidence 99999999999 99999999999999999999999999999999999999999999984 4433 899999999999
Q ss_pred cccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044901 338 HAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLI 417 (478)
Q Consensus 338 Hg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~~ 417 (478)
||+||+||++++|+|++++... .+ |++|++ .+|++.|+++++++++|+++.++++++++|++
T Consensus 305 Hgv~Gi~G~l~~glfa~~~~~g-------~~---Gl~~g~--------~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~ 366 (399)
T 2b2h_A 305 HGIGGLWGSVAVGILANPEVNG-------YA---GLLFGN--------PQLLVSQLIAVASTTAYAFLVTLILAKAVDAA 366 (399)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHS-------CC---CGGGTC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHccccccC-------CC---ccccCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999876421 11 777742 58999999999999999999999999999999
Q ss_pred cCCCCChHHhhcC-Chhhhccccccccc
Q 044901 418 VPLRLSKDELNIG-DEAVHGEKAFALVD 444 (478)
Q Consensus 418 ~~LRv~~e~E~~G-D~~~hg~~ay~~~~ 444 (478)
.+||+++|||++| |.+||||++||+.+
T Consensus 367 ~glRv~~e~E~~GlD~~~hg~~ay~~~~ 394 (399)
T 2b2h_A 367 VGLRVSSQEEYVGLDLSQHEEVAYTLEH 394 (399)
T ss_dssp TCSBCCHHHHHHCHHHHHHCCCSCC---
T ss_pred ccCCCCHHHHHhCCCHHHhCcccCCccc
Confidence 9999999999999 99999999998744
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=4.7e-100 Score=786.42 Aligned_cols=381 Identities=37% Similarity=0.626 Sum_probs=350.1
Q ss_pred cccccchHHHHHHHHHHHHHHH-HHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcccc
Q 044901 17 WMNKGDNAWQLTAATLVGLQSI-PGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVA 95 (478)
Q Consensus 17 ~~~~~d~~w~l~~~~lV~~~m~-~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~ 95 (478)
.+++.|+.|+|+|++|| |+|| |||+|+|+|+||+||+.|+++||++++++++++||++||+++||++ ++|+|+.+++
T Consensus 4 ~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~ 81 (385)
T 1u7g_A 4 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL 81 (385)
T ss_dssp CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchh
Confidence 45678999999999999 9999 9999999999999999999999999999999999999999999987 6899986554
Q ss_pred cchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCce
Q 044901 96 LDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGII 175 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~ 175 (478)
+..+...++ ..+++|+..+++||++||++|++|++||++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++
T Consensus 82 ~l~~~~~~~-~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~ 159 (385)
T 1u7g_A 82 MLKNIELTA-VMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLASHGAL 159 (385)
T ss_dssp GGTTCCTTC-EETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHHTCC
T ss_pred hccCCCCcc-cccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEc-chhhhhccee
Confidence 433221111 12468999999999999999999999999999999999999999999999999999995 8999999999
Q ss_pred eccCceeehhhhHHHHHHHHHhhCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHHH
Q 044901 176 DFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTS 255 (478)
Q Consensus 176 DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a 255 (478)
|||||++||++||++||+++++||||++|++++++|||++++++|+++||+||||||+||++..+..+.++++||++|++
T Consensus 160 DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaa 239 (385)
T 1u7g_A 160 DFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATA 239 (385)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccc
Q 044901 256 TSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVF 335 (478)
Q Consensus 256 ~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~ 335 (478)
+|+++|++++++++||+|+.+++||+|||||||||+|++++||+|++||+++|++|+++.+++++| +|||||||++
T Consensus 240 ag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~----l~iDD~l~a~ 315 (385)
T 1u7g_A 240 AAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL----LRVDDPCDVF 315 (385)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCCGGGHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHh----CCCCCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999887765 8999999999
Q ss_pred cccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044901 336 HTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIG 415 (478)
Q Consensus 336 ~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk 415 (478)
++||+||+||++++|+|++++.... + .+.|++|+ .|++.|+++++++++|+++.++++++++|
T Consensus 316 ~vHgv~Gi~G~l~~glfa~~~~~g~----~---~~~G~~~g----------~ql~~Ql~g~~~~~~~~~v~~~i~~~il~ 378 (385)
T 1u7g_A 316 GVHGVCGIVGCIMTGIFAASSLGGV----G---FAEGVTMG----------HQLLVQLESIAITIVWSGVVAFIGYKLAD 378 (385)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGTCC----C---CCTTCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccHHHHHHHHHhccccccCc----c---ccCCcchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764211 0 01144332 69999999999999999999999999999
Q ss_pred hhcCCCC
Q 044901 416 LIVPLRL 422 (478)
Q Consensus 416 ~~~~LRv 422 (478)
++.+||+
T Consensus 379 ~~~glRv 385 (385)
T 1u7g_A 379 LTVGLRV 385 (385)
T ss_dssp HHTCSBC
T ss_pred HccCCcC
Confidence 9999997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=1.6e-81 Score=650.59 Aligned_cols=343 Identities=18% Similarity=0.251 Sum_probs=303.3
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcccccchhhhcccccCCCcchhh
Q 044901 35 LQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTAT 114 (478)
Q Consensus 35 ~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~~~~~~~~~~~~~~~~~~~~ 114 (478)
.++.+||++|++++ |||..+.+.+|++.. ...++|+.++|. + +|.. ++++|..+
T Consensus 25 vMi~iGfGFL~~~L--rk~~~s~v~~n~l~~-a~~~QW~~l~~~--~-----Gf~~----------------~g~ip~~~ 78 (407)
T 3b9w_A 25 AMLLVGFGFLMVFV--RRYGFSATTGTYLVV-ATGLPLYILLRA--N-----GIFG----------------HALTPHSV 78 (407)
T ss_dssp HHHHHHHHHHGGGS--TTCHHHHHHHHHHHH-HHHHHHHHHHHH--T-----TTTS----------------SCCCSSSH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHhc--c-----cccC----------------CCcchHHH
Confidence 45667999999998 999999999999874 467899999982 1 1111 24688899
Q ss_pred hhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCceeccCceeehhhhHHHHHHH
Q 044901 115 MVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194 (478)
Q Consensus 115 ~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~ 194 (478)
+++||++||++|++|++||++||+|+.+|++|+ +|.+++|||++||+|+ +||+...|++|||||++||++||++||++
T Consensus 79 ~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~-~~~~~vY~~~~~wvw~-gG~~~~~G~~DfAGs~vVH~~gG~~aLa~ 156 (407)
T 3b9w_A 79 DAVIYAEFAVATGLIAMGAVLGRLRVFQYALLA-LFIVPVYLLNEWLVLD-NASGLTEGFQDSAGSIAIHAFGAYFGLGV 156 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH-HHHHHHHHHHHHHHTT-CTTSSCTTCCCTTCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH-HHHHHhccceeEEEeC-CcchhhcceeeccCceEEEeCchHHHHHH
Confidence 999999999999999999999999999999997 6789999999999995 78987779999999999999999999999
Q ss_pred HHhhCCCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHHHHHHHHHHHHHHh-hcCCC
Q 044901 195 SYWVGPRSDKD-REKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTS-FYGKP 272 (478)
Q Consensus 195 a~~lG~R~~~~-~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~-~~~k~ 272 (478)
+++||||++|+ +++++|||++++++|+++||+||||||+| +..+..+.++++||++|+++|+++|++++++ .+||+
T Consensus 157 a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~ 234 (407)
T 3b9w_A 157 SIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA 234 (407)
T ss_dssp HHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999997652 22389999999999999999999999999 3456788999999999999999999999997 78999
Q ss_pred CHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccccccchhhhhhhhhhc
Q 044901 273 SVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFF 352 (478)
Q Consensus 273 ~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glf 352 (478)
|+.+++||+|||||||||+|++++||+|++||+++|++|+++.+++++++++++|||||||++++||+||+||++++++|
T Consensus 235 ~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glf 314 (407)
T 3b9w_A 235 SIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILI 314 (407)
T ss_dssp CHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred cccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHhhcC--
Q 044901 353 AVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-- 430 (478)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~~~~LRv~~e~E~~G-- 430 (478)
+.+. . ..|+++++++++|+++.++++++++|+ |+++|+|..|
T Consensus 315 a~~~------------------------------~--~~Ql~g~~~~~~~s~v~~~i~~~il~~----r~~~e~e~~g~~ 358 (407)
T 3b9w_A 315 VPGI------------------------------A--VAQLTGIGITLALALIGGVIAGALIKL----TGTTKQAYEDSH 358 (407)
T ss_dssp STTC------------------------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCSSTTCGGG
T ss_pred ccCC------------------------------c--HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCHHHHcCCcc
Confidence 8541 1 159999999999999999999999997 9999999988
Q ss_pred -------Chhhhcccccccc
Q 044901 431 -------DEAVHGEKAFALV 443 (478)
Q Consensus 431 -------D~~~hg~~ay~~~ 443 (478)
|..||||++||++
T Consensus 359 ~we~p~ld~~~hg~~ayp~~ 378 (407)
T 3b9w_A 359 EFIHLAGPEDEHKAERLVLE 378 (407)
T ss_dssp TSSSCCCGGGC---------
T ss_pred cccCccccHHHhchhhccch
Confidence 8999999999876
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.1e-79 Score=640.96 Aligned_cols=399 Identities=19% Similarity=0.277 Sum_probs=328.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhHH-----------------HHHHHHHHHHHHH-HHHHHHhhhhhhccCC
Q 044901 23 NAWQLTAATLVGLQSIPGLVILYGSLVHKKWAI-----------------NSAFMAFYAFAMV-FVCWVGWAYRMSFGER 84 (478)
Q Consensus 23 ~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~-----------------~~l~~~~~~~~v~-~~~w~~~Gy~lafg~~ 84 (478)
.++.|...+ ++.|..|+.+++-++|+.+.. |.+...+..++++ +|+++.+||.++|-++
T Consensus 12 ~r~~lp~~~---~~~q~~~ivlf~~fv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~Yp~fqDv~vMi~~GfGFLmtflkr 88 (490)
T 3hd6_A 12 LRWRLPLTC---LLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYPSFQDVHVMVFVGFGFLMTFLQR 88 (490)
T ss_dssp CTTHHHHHH---HHHHHHHHHHHHHHEECCCC------------------CHHHHHHHHHHHHHHHHHTHHHHHGGGSTT
T ss_pred hhHHHHHHH---HHHHHHHHHhhheeEEecCCCCccccccccccccccccchhhhcCccchhHHHHHHHHHHHHHHHHHH
Confidence 356665443 567888999999999995321 1355668899999 9999999999999999
Q ss_pred CCccccCcccc-----------cchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHh
Q 044901 85 LVNFLGKPNVA-----------LDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTC 153 (478)
Q Consensus 85 ~~~fiG~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~ 153 (478)
|+ |.+...++ +.++++ ...+++++|..++++||++||++|++|++||++||+|+.+|++|+++ .++
T Consensus 89 yg-~ssv~~n~l~~a~~~Qwa~l~~g~~-~~~~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l-~~~ 165 (490)
T 3hd6_A 89 YG-FSAVGFNFLLAAFGIQWALLMQGWF-HFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFF-QVT 165 (490)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHHHHHHHT-TCBTTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-HHH
T ss_pred hc-cHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHH
Confidence 73 32221121 112332 22346789999999999999999999999999999999999999876 578
Q ss_pred hhcceeeeeEcCCccccccCceeccCceeehhhhHHHHHHHHHhhCCCC---CCCCCCCCCCcHHHHHHHHHHHHHhhhh
Q 044901 154 SYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRS---DKDREKFPPNNIILMLAGAGLLWMGWSG 230 (478)
Q Consensus 154 vYp~~ahwvW~~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~---~~~~~~~~~~n~~~~~lGt~lLw~GW~g 230 (478)
+||++ ||+ ||.++|++|||||++||++||++||+++++||||. ++++++++|||++++++|+++||+||||
T Consensus 166 vY~~~-~w~-----~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfG 239 (490)
T 3hd6_A 166 LFAVN-EFI-----LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPS 239 (490)
T ss_dssp HHHHH-HHH-----HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh-HHH-----HHhccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99985 554 68899999999999999999999999999999983 4456778999999999999999999999
Q ss_pred hcCCCccccChhhhhHHHHHHHHHHHHHHHHHHHHHh--hcCCCCHhhhhhhhhccceeecCCCC-CcchHHHHHHHHhh
Q 044901 231 FNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTS--FYGKPSVIGAVQGMITGLVCITPAAG-VVQGWAALFMGLIS 307 (478)
Q Consensus 231 FN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~LaGlVaita~a~-~v~p~~AliiG~ia 307 (478)
||+|++.. +..+.++++||++|+|+|+++|++++++ .+||+|+.+++||+|||||||||+|+ +++||+|++||++|
T Consensus 240 FN~gs~~~-~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~ia 318 (490)
T 3hd6_A 240 FNSAISYH-GDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVC 318 (490)
T ss_dssp HTTTTCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHH
T ss_pred hchhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHH
Confidence 99998753 4678899999999999999999999986 57899999999999999999999999 69999999999999
Q ss_pred hhhhhHHHHHHHhhhccccccccccccccccccchhhhhhhhhhccccccccccccCCCcccccceeecc-----cCCcc
Q 044901 308 GSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGL-----QNGRT 382 (478)
Q Consensus 308 g~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~-----~~g~~ 382 (478)
|++|+++++++++++++++|||||||++++||+||+||++++|+|+....... ++ ..|++|.- +++|
T Consensus 319 G~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~~-~g------~~Gl~~~f~~~~~~gg~- 390 (490)
T 3hd6_A 319 GIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEV-YG------KEGLVHSFDFQGFNGDW- 390 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC-----------------------------CH-
T ss_pred HHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHhccccccc-cc------cCcceeccccccccCCc-
Confidence 99999999988777777799999999999999999999999999987532110 11 11555410 0111
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHhhcC-Chhhhcccccccc
Q 044901 383 SAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEAVHGEKAFALV 443 (478)
Q Consensus 383 ~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~~~~LRv~~e~E~~G-D~~~hg~~ay~~~ 443 (478)
.+.+|++.|+++++++++|+++.++++++++|+..++|+++|+|.+| |..|+.++.|+++
T Consensus 391 -~~~~ql~~Ql~gv~~~~~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~ 451 (490)
T 3hd6_A 391 -TARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVY 451 (490)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC---
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCccccccc
Confidence 13589999999999999999999999999999999999999999999 9999999988765
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=48.13 E-value=2.3e+02 Score=28.87 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhhhccccchh--HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCccc
Q 044901 17 WMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKW--AINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNV 94 (478)
Q Consensus 17 ~~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn--~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~ 94 (478)
.+..-|..+.++.+.+. ++--+|| .+|+.-..| +..+++...++.+.+.+.|.++-|.. ++- +
T Consensus 181 ~~~~hn~~~~~lG~~lL-W~GWfGF---N~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~--------~- 245 (399)
T 2b2h_A 181 SIEPHSIPLTLIGAALL-WFGWFGF---NGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKP--------G- 245 (399)
T ss_dssp CCCCSCHHHHHHHHHHH-HHHHHHH---HHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC--------C-
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHhh---cHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCC--------C-
Confidence 34556678888888877 6666554 555544433 34566677888888899998877654 321 0
Q ss_pred ccchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCc
Q 044901 95 ALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGI 174 (478)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~ 174 (478)
.....+ .+.+-.....+-++-+++..-++..++ +++++.... + +..++++
T Consensus 246 -------------------~~~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~-~------l~~kl~i 295 (399)
T 2b2h_A 246 -------------------SLGIVS---GAIAGLAAITPAAGFVDVKGAIVIGLV-AGIVCYLAM-D------FRIKKKI 295 (399)
T ss_dssp -------------------HHHHHH---HHHHHHHHHTTTTTTCCHHHHHHHHHH-HHHHHHHHH-H------HHHHTTC
T ss_pred -------------------HHHHHH---HHHHhhhhhccccccCCHHHHHHHHHH-HHHHHHHHH-H------HHHHcCC
Confidence 000111 223333333444466778877777644 444444322 1 3467999
Q ss_pred eeccCceeehhhhHHHHHHHHHhhC
Q 044901 175 IDFAGGYVIHVSAGVAGFTASYWVG 199 (478)
Q Consensus 175 ~DfaG~~vVH~~gG~~gL~~a~~lG 199 (478)
.|.-+.-.||..+|..|..++-+..
T Consensus 296 DD~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 296 DESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCceeccchhhHHHHHHHHHHc
Confidence 9999999999999999988876654
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=45.08 E-value=1.1e+02 Score=31.35 Aligned_cols=143 Identities=12% Similarity=0.043 Sum_probs=85.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcccccc
Q 044901 18 MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALD 97 (478)
Q Consensus 18 ~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~~~ 97 (478)
+..-|..+.++.+.++ ++--+| +.+|+.....+.+++++..++.+.+.+.|.++-+.+-.++- +
T Consensus 172 ~~~hn~~~~~lGt~lL-W~GWfG---FN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~--------~---- 235 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVL-WLFWPS---FATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA--------S---- 235 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHH---HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------C----
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh---hhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC--------C----
Confidence 4455667888888777 665544 45664333445567777788888889999877665422221 0
Q ss_pred hhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccc-cccCcee
Q 044901 98 EKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWL-AKLGIID 176 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL-~~lG~~D 176 (478)
...+.+ .+.+-....++-++-+++..-++..++ +++++.....+. .-+| .++++.|
T Consensus 236 ----------------~~~~~n---G~LAGLVAITa~~~~v~p~~A~iIG~i-aG~i~~~~~~~l---~~~l~~~l~iDD 292 (407)
T 3b9w_A 236 ----------------IVDMAN---AALAGGVAIGSVCNIVGPVGAFVIGLL-GGAISVVGFVFI---QPMLESKAKTID 292 (407)
T ss_dssp ----------------HHHHHH---HTTHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHHTH---HHHHHHHSCCCC
T ss_pred ----------------HHHHHH---hhhhhhheeccCCCCCCHHHHHHHHHH-HHHHHHHHHHHH---HHHHHhcCCCCC
Confidence 000111 122222333334455777777777644 454544322210 0122 3589999
Q ss_pred ccCceeehhhhHHHHHHHHHhhC
Q 044901 177 FAGGYVIHVSAGVAGFTASYWVG 199 (478)
Q Consensus 177 faG~~vVH~~gG~~gL~~a~~lG 199 (478)
.-|.-.||..+|..|..++-+..
T Consensus 293 ~l~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 293 TCGVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp TTCHHHHTTHHHHHHHHHHHHHS
T ss_pred CCCCeecchHHHHHHHHHHHHHc
Confidence 99999999999999988876664
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=20.72 E-value=85 Score=32.98 Aligned_cols=73 Identities=15% Similarity=0.049 Sum_probs=50.9
Q ss_pred hhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccccccchhhhhhhhhhcccc
Q 044901 279 QGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVP 355 (478)
Q Consensus 279 nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~ 355 (478)
=.+.+-.+..++-++-+++.+-++..++..++|... .++ + ..+++..|--+.-.||-.+|.-|...+-+...+
T Consensus 135 Faa~t~~IvsGAvaeR~k~~~~li~~~l~~~vY~~~-~w~--~-L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R 207 (490)
T 3hd6_A 135 FCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVN-EFI--L-LNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRR 207 (490)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-HHH--H-HTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-HHH--H-HhccCceeecCceeeeHHHHHHHHHHHHhcCCc
Confidence 334444555566677788888888888776665543 222 1 123899999999999999999988877776644
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=17.13 E-value=7.8e+02 Score=24.69 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=87.6
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhhhhccccchh--HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcc
Q 044901 16 EWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKW--AINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPN 93 (478)
Q Consensus 16 ~~~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn--~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~ 93 (478)
+.+..-|..+.++.+.+. ++--+|| .+|+.-..| +..+++...++.+.+.+.|.++-|.. .++ .+
T Consensus 191 ~~~~~hn~~~~~lGt~lL-W~GWfGF---N~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-~gk--------~~ 257 (385)
T 1u7g_A 191 EAFKPHNLPMVFTGTAIL-YIGWFGF---NAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL-RGL--------PS 257 (385)
T ss_dssp SSCCGGGHHHHHHHHHHH-HHHHHHH---HHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSS--------CC
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHhhh---cchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHH-cCC--------CC
Confidence 345556778888888877 7766664 455444333 34566677888888888988775541 111 00
Q ss_pred cccchhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccC
Q 044901 94 VALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLG 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG 173 (478)
. ....=.+.+-.....+-++-+++..-++..++ +++++.....+ ...+++
T Consensus 258 -------------------~----~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~~~------l~~~l~ 307 (385)
T 1u7g_A 258 -------------------L----LGACSGAIAGLVGVTPACGYIGVGGALIIGVV-AGLAGLWGVTM------LKRLLR 307 (385)
T ss_dssp -------------------H----HHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHHH------HHHHHC
T ss_pred -------------------H----HHHHHHHHHhhhhhccCCCCCCHHHHHHHHhH-HHHHHHHHHHH------HHHhCC
Confidence 0 01111233333333444567888888888644 55555433222 124789
Q ss_pred ceeccCceeehhhhHHHHHHHHHhhCC
Q 044901 174 IIDFAGGYVIHVSAGVAGFTASYWVGP 200 (478)
Q Consensus 174 ~~DfaG~~vVH~~gG~~gL~~a~~lG~ 200 (478)
+.|.-+.-.||..+|..|..++-+...
T Consensus 308 iDD~l~a~~vHgv~Gi~G~l~~glfa~ 334 (385)
T 1u7g_A 308 VDDPCDVFGVHGVCGIVGCIMTGIFAA 334 (385)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCEeecccccHHHHHHHHHhcc
Confidence 999999999999999999888766643
No 9
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=8.77 E-value=4e+02 Score=26.93 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=43.0
Q ss_pred hhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccccccchhhhhhhhhhccc
Q 044901 275 IGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAV 354 (478)
Q Consensus 275 ~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~ 354 (478)
+..+|-.++|+.-.-+- -+-+||.| +.++++.++....-+. ++-|+.-=--.+||.+|.+-+++.+.|..
T Consensus 64 V~f~~n~lsGlliLigl-~i~sp~~a-l~allG~~vstltA~l--------lg~~~~~I~~GLyGfNg~Lvgial~~f~~ 133 (384)
T 4ezc_A 64 VVFVSNPISGILILVGL-LVQNPWCA-LNGCVGTVVSTLTALL--------LSQDRSAITAGLQGYNATLVGILMAIYSD 133 (384)
T ss_dssp GGTCCCHHHHHHHHHHH-HHHCHHHH-HHHHHHHHHHHHHHHH--------TTCCHHHHHHTTTTHHHHHHHHHHHHTBT
T ss_pred EEecCCcHHHHHHHHHH-HHhhHHHH-HHHHHHHHHHHHHHHH--------hCCCHHHHHcchhhhhHHHHHHHHHHHhc
Confidence 34556666665422110 11256655 6677777777655443 44555444568999999999999888754
Q ss_pred c
Q 044901 355 P 355 (478)
Q Consensus 355 ~ 355 (478)
+
T Consensus 134 ~ 134 (384)
T 4ezc_A 134 K 134 (384)
T ss_dssp T
T ss_pred c
Confidence 3
No 10
>2fd4_A Avirulence protein AVRPTOB; ring finger, U-BOX, ubiquitin ligase,; 1.80A {Pseudomonas syringae}
Probab=7.29 E-value=2e+02 Score=23.74 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=12.6
Q ss_pred CCChHHhhcC--Chhhhccc-ccc-ccccccccccC
Q 044901 421 RLSKDELNIG--DEAVHGEK-AFA-LVDDRERFEVS 452 (478)
Q Consensus 421 Rv~~e~E~~G--D~~~hg~~-ay~-~~~~~~~~~~~ 452 (478)
|.+.|.|+.| |.+.|..+ +-. .|.++.+.++.
T Consensus 22 kadaes~~~gFkDaAdh~~ddaT~CLFGe~LSL~np 57 (122)
T 2fd4_A 22 KADAESEELGFKDAADHHTDDVTHCLFGGELSLSNP 57 (122)
T ss_dssp CC------CCCCCCCC----CCCBCTTSSBCCTTCT
T ss_pred hhhhhhcccCcchhhhcCCCCcceecccCccccCCC
Confidence 4677889999 99986544 332 34454444443
Done!