RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044901
(478 letters)
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 191 bits (486), Expect = 5e-57
Identities = 135/405 (33%), Positives = 199/405 (49%), Gaps = 24/405 (5%)
Query: 18 MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAY 77
+K DNA+ + LV +IPG+ + YG L+ K ++ FA+V + WV + Y
Sbjct: 3 ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62
Query: 78 RMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGR 137
++ GE F + L L I V FQG FACIT+ LI GAL R
Sbjct: 63 SLASGEGNNFFGNINWLMLKNIELTAVMG--SIYQYIHVAFQGSFACITVGLIVGALAER 120
Query: 138 MNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYW 197
+ F A ++FV +WLT SY + G LA G +DFAGG V+H++A +AG +Y
Sbjct: 121 IRFPAVLIFVVVWLTLSYIPI-AHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYL 179
Query: 198 VGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTS 257
+G R +E F P+N+ ++ G +L++GW GFN G + A+LA +NT V T+ +
Sbjct: 180 IGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAA 239
Query: 258 LLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMV 317
+L W+ + + G PS++GA G I GLV +TPA G + AL +G+++G + + +
Sbjct: 240 ILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTM 299
Query: 318 LHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGL 377
L + + DDP VF H V G +G I+TG FA L G+
Sbjct: 300 LKRLLRV----DDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------------GGV 338
Query: 378 QNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRL 422
Q+ VQL IA I + I L L V LR+
Sbjct: 339 GFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 31.3 bits (71), Expect = 0.14
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 434 VHGEKAFALVDDRERFEVSPKHNSVYDIEEFSYVGSRSVGEVQMV 478
V GE+ F L+ EVS + + + Y+G V +
Sbjct: 30 VVGERNFTLL------EVSIRKGKQPLVMDRVYIGKGERDVVYKI 68
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 29.4 bits (65), Expect = 0.56
Identities = 29/139 (20%), Positives = 36/139 (25%), Gaps = 11/139 (7%)
Query: 116 VFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNG-WLAKLGI 174
VFF I I G GR+ + VP T A + G L
Sbjct: 6 VFFD--------ITIGGKASGRIVMELYDDVVPK--TAGNFRALCTGENGIGKSGKPLHF 55
Query: 175 IDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGG 234
+I G EKFP N G G+L M +G N
Sbjct: 56 KGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTN 115
Query: 235 GPFAISTDASLAILNTHVC 253
G L+
Sbjct: 116 GSQFFLCTVKTEWLDGKHV 134
>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate
decarboxylase {Plasmodium falciparum (isolate 3D7)
(Plasmodium falciparum 3D7) [TaxId: 36329]}
Length = 323
Score = 28.4 bits (62), Expect = 1.8
Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 14/145 (9%)
Query: 79 MSFGERLVNFLGKPN----VALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGAL 134
M F +L N + LD + F + + + + I
Sbjct: 1 MGFKVKLEKRRNAINTCLCIGLDPDEKDIENF---MKNEKENNYNNIKKNLKEKYINNVS 57
Query: 135 IGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
I + + F+ +C II+ Y + A +
Sbjct: 58 IKKDILLKAPDNIIREEKSEEFFYFFNHFC-------FYIINETNKYALTFKMNFAFYIP 110
Query: 195 SYWVGPRSDKDREKFPPNNIILMLA 219
VG K+ + I +
Sbjct: 111 YGSVGIDVLKNVFDYLYELNIPTIL 135
>d1hc1a1 a.85.1.1 (A:5-135) Hemocyanin, N-terminal domain {Spiny
lobster (Panulirus interruptus) [TaxId: 6735]}
Length = 131
Score = 26.3 bits (58), Expect = 4.3
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 356 KLCRLFYMLPDWEKYIGLA 374
L + +W + A
Sbjct: 81 MLFAVLNQCKEWYCFRSNA 99
>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 190
Score = 26.8 bits (59), Expect = 5.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 40 GLVILYGSL---VHKKWAINSAFMAFYAFAMVF 69
GL +L G+L V K A+ A A+V
Sbjct: 1 GLKLLKGNLGRAVIKVSAVQPQHRVVEAPAVVI 33
>d1ei5a3 e.3.1.1 (A:3-335) D-aminopeptidase, N-terminal domain
{Ochrobactrum anthropi [TaxId: 529]}
Length = 333
Score = 26.5 bits (57), Expect = 6.5
Identities = 12/162 (7%), Positives = 31/162 (19%), Gaps = 10/162 (6%)
Query: 52 KWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIP 111
+ S + + + + + L + P + + A
Sbjct: 142 HFEPGSHYSYCNGNFRILADLIEAHTGRTLVDILSERIFAPAGMKRAELISDTALFDECT 201
Query: 112 TATMVFFQGVFACITLILIAGALIGRMNFRAWMLFV----------PLWLTCSYTVAAFS 161
+G I G + + + F
Sbjct: 202 GYEGDTVRGFLPATNRIQWMGDAGICASLNDMIAWEQFIDATRDDESGLYRRLSGPQTFK 261
Query: 162 IWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSD 203
+ L + + G + + G+ W
Sbjct: 262 DGVAAPYGFGLNLHETGGKRLTGHGGALRGWRCQRWHCADER 303
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 26.6 bits (58), Expect = 6.5
Identities = 4/57 (7%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 350 GFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAG----LRQMGVQLLGIAFVICL 402
A + + + + + + L G T+ + ++ + ++ +
Sbjct: 121 KEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSI 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.461
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,859,692
Number of extensions: 87274
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 23
Length of query: 478
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,185,626
Effective search space: 461208514
Effective search space used: 461208514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.4 bits)