Query 044902
Match_columns 389
No_of_seqs 139 out of 188
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 1E-108 3E-113 817.5 29.5 323 34-365 1-334 (335)
2 PF11955 PORR: Plant organelle 98.7 1.3E-07 2.9E-12 95.2 11.0 140 129-323 12-152 (335)
3 PLN03196 MOC1-like protein; Pr 79.4 1.6 3.5E-05 46.4 3.3 100 276-387 362-474 (487)
4 PLN03196 MOC1-like protein; Pr 71.7 3 6.4E-05 44.5 2.8 50 273-325 324-374 (487)
5 PF12872 OST-HTH: OST-HTH/LOTU 25.4 1.3E+02 0.0028 22.8 4.2 52 55-106 9-68 (74)
6 PHA01746 hypothetical protein 25.3 28 0.00061 30.5 0.5 59 44-102 16-90 (131)
7 PRK06264 cbiC precorrin-8X met 20.9 84 0.0018 30.3 2.8 58 220-289 152-209 (210)
8 PF04530 Viral_Beta_CD: Viral 18.5 87 0.0019 27.8 2.1 26 224-250 91-116 (122)
9 PF04340 DUF484: Protein of un 14.5 1.6E+02 0.0035 27.8 3.1 83 86-168 9-112 (225)
10 PRK10870 transcriptional repre 14.4 9.1E+02 0.02 21.9 8.7 67 58-130 62-133 (176)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=1.3e-108 Score=817.50 Aligned_cols=323 Identities=41% Similarity=0.718 Sum_probs=299.3
Q ss_pred hcCChhHHHHHhhhcchhHHHHHHHHHhcCCCCCCCccHHHHHhhcccccCc-ccHHHHHhhCCcceEEecCCCCCCCcc
Q 044902 34 RFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLN-RGATAFLRKYPHIFHIFYDPVKSQPFC 112 (389)
Q Consensus 34 r~rD~~lD~~i~~~k~lk~vl~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~-~~~~~FlrkyP~iF~~~~~~~~~~p~~ 112 (389)
++||++||++|+++|+++++++|+++|+++|+ +++|++.+++++++|||+ +++++||+|||+||++|.++..++|||
T Consensus 1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~--~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~ 78 (335)
T PF11955_consen 1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPS--HSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWF 78 (335)
T ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCC--CcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceE
Confidence 46999999999999999999999999999999 999999999999999995 899999999999999999988999999
Q ss_pred cCcHHHHHHHHHHHHHHHHchHHHHHHHHHHhcccCCCccchHHHHHHHHhcCCCcccchhccccCCCceEEecCCCCCc
Q 044902 113 KLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNI 192 (389)
Q Consensus 113 rLT~~a~~L~~eE~~v~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frlv~~~~~~~ 192 (389)
+||++|++|++||++|++++++++|++|+||||||.+++|||++|++++||||||+||++++|++|||+|+||+..++..
T Consensus 79 ~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~ 158 (335)
T PF11955_consen 79 RLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGR 158 (335)
T ss_pred EeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999444333
Q ss_pred cchhhhhhcccchhhhhc---c-------ccccccccccccccccCCCCcccchhHHHHHHhhhcCCCCCCCCCcCcccc
Q 044902 193 HRDFTAAVDNWRVTECCK---E-------DCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKK 262 (389)
Q Consensus 193 ~~~~~~~v~~w~~~e~~~---~-------~~~v~~~~~~~aF~~~fp~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~~~~ 262 (389)
. ..+++|++..+.. + +........+++||++||+||++++++++|+++||+|||+|||+|+++.
T Consensus 159 ~----LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l-- 232 (335)
T PF11955_consen 159 Y----LELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHL-- 232 (335)
T ss_pred E----EEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCC--
Confidence 3 2356777654421 0 1123345678999999999999999999999999999999999999764
Q ss_pred cccCchhhhhHHHHHHHHHhhccchhhhhhhHHHhhHHhhCCcHHHHHHHhhCCCcEEEeeeCCeeeEEEeecccCCCcc
Q 044902 263 TKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLI 342 (389)
Q Consensus 263 ~~~~s~e~EKRaVaVlHELLSLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgIFYvS~Kg~~~TVfLREAY~~g~Li 342 (389)
++||+++|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+||
T Consensus 233 -~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Li 311 (335)
T PF11955_consen 233 -DPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELI 311 (335)
T ss_pred -CCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHcccCCC
Q 044902 343 EPNPVYDVRRKLLDLVFLGRHGS 365 (389)
Q Consensus 343 ek~Pl~~ir~K~~~Lm~~grr~~ 365 (389)
|||||+.+|+||++||..|++..
T Consensus 312 ek~Pl~~~r~k~~~Lm~~~~~~~ 334 (335)
T PF11955_consen 312 EKHPLVVIREKFLELMQEGRRKR 334 (335)
T ss_pred CCCchHHHHHHHHHHHhhccccc
Confidence 99999999999999999998753
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=98.67 E-value=1.3e-07 Score=95.16 Aligned_cols=140 Identities=24% Similarity=0.331 Sum_probs=104.7
Q ss_pred HHHchHHHHHHHHHHhcccCCCccchHHHHHHHHhcCCCcccchhccccCCCceEEecCCCCCccchhhhhhcccchhhh
Q 044902 129 INACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRVTEC 208 (389)
Q Consensus 129 ~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frlv~~~~~~~~~~~~~~v~~w~~~e~ 208 (389)
-.+.....|.+|+.+|--++++.||++.+...+..|||+.-=..+++.+||..|.+...+..... ++
T Consensus 12 ~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~-----~~-------- 78 (335)
T PF11955_consen 12 EREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVP-----WF-------- 78 (335)
T ss_pred HhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCc-----eE--------
Confidence 34445688999999999999999999999999999999533335789999999999874221110 01
Q ss_pred hccccccccccccccccccCCCCcccchhHHHHHHhhhcCCCCCCCCCcCcccccccCchhhhhHHHHHHHHHhhccchh
Q 044902 209 CKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEK 288 (389)
Q Consensus 209 ~~~~~~v~~~~~~~aF~~~fp~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~~~~~~~~s~e~EKRaVaVlHELLSLTveK 288 (389)
++.....+-+. . .. ..-.+.|--+|..+.-||.|+..+
T Consensus 79 ------------------------~LT~~a~~L~~------------e--E~----~~~~~~e~~~v~rL~KLLMMS~~~ 116 (335)
T PF11955_consen 79 ------------------------RLTPEAEDLLR------------E--ER----RVREEMEPDLVERLRKLLMMSKDR 116 (335)
T ss_pred ------------------------EeCHHHHHHHH------------H--HH----HHHHhChHHHHHHHHHHhccCCCC
Confidence 00000000000 0 00 012356788899999999999999
Q ss_pred hhhhhHHHhhHHhhCCcHHHHHH-HhhCCCcEEEee
Q 044902 289 MVEVEKISHFRKWFGIDFNIRDL-FLDHPGIFYLST 323 (389)
Q Consensus 289 r~~~~~L~~fr~efgLp~k~~~~-l~rHPgIFYvS~ 323 (389)
++.+++|.|++.+||||..|..- +-+||+.|=|..
T Consensus 117 rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 117 RLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred cccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence 99999999999999999999986 699999999987
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=79.38 E-value=1.6 Score=46.44 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=60.9
Q ss_pred HHHHHHhhccchhhhhhhHHHhhHHhhCCcHHHHHHHhhCCCcEEEeeeCC---eeeEEEeecccCCCccCCCchhH---
Q 044902 276 AIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGK---RHTVFLREAYERGQLIEPNPVYD--- 349 (389)
Q Consensus 276 aVlHELLSLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgIFYvS~Kg~---~~TVfLREAY~~g~Liek~Pl~~--- 349 (389)
.-.=-+|++.+ .....++.-|.+++|+| .+.+.++|.+|-.|+... ||.| |++ +|- +.+|..
T Consensus 362 ~k~P~lL~~S~--~~l~~k~dFlvneMg~~---~~~Iv~fP~~LsySLEkRI~PR~~~-L~~---kGl---~~sL~~~L~ 429 (487)
T PLN03196 362 VRCPQILALNL--EIMKPSLEFFKKEMKRP---LKELVEFPAYFTYGLESRIKPRYER-VAK---KGI---KCSLAWFLN 429 (487)
T ss_pred HhCCceeeccH--HHHHHHHHHHHHHhCCC---HHHHHhChHHhccChhhhhHHHHHH-HHH---cCC---CCCHHHHhc
Confidence 33345677776 44578899999999999 445789999999997644 6765 442 332 334432
Q ss_pred H-HHHHHHHHHcccCC------CCCCCCCccccccCCCCCccccc
Q 044902 350 V-RRKLLDLVFLGRHG------SVTGGSKSGEVGTRGDSESEDEN 387 (389)
Q Consensus 350 i-r~K~~~Lm~~grr~------~~~~~~~~~~~~~~~~~~~~~~~ 387 (389)
. -++|.+-+.....+ ....++..+..+.--.+|+||+.
T Consensus 430 ~sd~~F~~r~v~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T PLN03196 430 CSDDKFEQRMSGDFIEGEEMEPLFSMGGKLEMPGSESVSDEEDDD 474 (487)
T ss_pred cCHHHHHHHHhhhcccccccCCCcccCCcccCCCCccccCccccc
Confidence 2 24466655433322 22355667777765555555443
No 4
>PLN03196 MOC1-like protein; Provisional
Probab=71.74 E-value=3 Score=44.51 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhccchhhhhhhHHHhhHHhhCCc-HHHHHHHhhCCCcEEEeeeC
Q 044902 273 RAVAIVHEFLSLTVEKMVEVEKISHFRKWFGID-FNIRDLFLDHPGIFYLSTKG 325 (389)
Q Consensus 273 RaVaVlHELLSLTveKr~~~~~L~~fr~efgLp-~k~~~~l~rHPgIFYvS~Kg 325 (389)
++|.-+-.+|++..+| -..++..|++ +|++ +.+..|+.++|.++-.|.+.
T Consensus 324 ~~v~k~P~il~lSe~k--l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~ 374 (487)
T PLN03196 324 RVIEKLPQIVSLNRNV--ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEI 374 (487)
T ss_pred HHHHhcchhhcccHHH--HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHH
Confidence 3455566788887654 3467777865 9998 66778999999999999753
No 5
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.36 E-value=1.3e+02 Score=22.81 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCCCccHHHHHhhccccc--Cc------ccHHHHHhhCCcceEEecCCC
Q 044902 55 SVQDLILANRNSPPSVSLEFLSRLSQKLH--LN------RGATAFLRKYPHIFHIFYDPV 106 (389)
Q Consensus 55 ~lk~lI~s~P~~~~~~~l~~l~k~~~~Lg--l~------~~~~~FlrkyP~iF~~~~~~~ 106 (389)
.|+++|.+.++....+++..+...-++.. |+ ..+..||+..|.+|++-..+.
T Consensus 9 ~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~~~~i~~~~~ 68 (74)
T PF12872_consen 9 LLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPDVVEIEERQH 68 (74)
T ss_dssp HHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TTTEEEEEEEC
T ss_pred HHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCCeEEEeeeCC
Confidence 46677756664213677777755433322 32 359999999999999944433
No 6
>PHA01746 hypothetical protein
Probab=25.33 E-value=28 Score=30.53 Aligned_cols=59 Identities=12% Similarity=0.303 Sum_probs=42.7
Q ss_pred HhhhcchhHHHHHHHH------HhcCCCCCC---CccHHHHHhhcccccCc-------ccHHHHHhhCCcceEEe
Q 044902 44 MDKYKNYIKVISVQDL------ILANRNSPP---SVSLEFLSRLSQKLHLN-------RGATAFLRKYPHIFHIF 102 (389)
Q Consensus 44 i~~~k~lk~vl~lk~l------I~s~P~~~~---~~~l~~l~k~~~~Lgl~-------~~~~~FlrkyP~iF~~~ 102 (389)
.+..|-...+++||.+ |-+.|+.++ +|.+..-+..++++|+. .-++.||.||-.-...|
T Consensus 16 k~snk~aSkIlkIKg~~rivlQiNAvP~dg~vr~SMTiHs~nNfkKQIGiTa~DAgdL~lIa~FLeKYS~~LnkY 90 (131)
T PHA01746 16 KESNKIASRILKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAGDLKLIAEFLEKYSDFLNEY 90 (131)
T ss_pred HHcCChHHHHheecCcceEEEEeeccCCCCeeEEEEEEecccchhhhcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 3347778888888875 457785333 46777778889999994 12889999998876654
No 7
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=20.90 E-value=84 Score=30.26 Aligned_cols=58 Identities=19% Similarity=0.372 Sum_probs=42.7
Q ss_pred ccccccccCCCCcccchhHHHHHHhhhcCCCCCCCCCcCcccccccCchhhhhHHHHHHHHHhhccchhh
Q 044902 220 LRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKM 289 (389)
Q Consensus 220 ~~~aF~~~fp~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~~~~~~~~s~e~EKRaVaVlHELLSLTveKr 289 (389)
.+.++-+..|-||---..-+++|.+ +..||+. . ...+.|| =-|+|++|.||.+-.++|
T Consensus 152 ~~PalVIg~PVGFV~A~ESKe~L~~-~~vP~It----~---~GrkGGS----~vAaAivNALl~~~~~~~ 209 (210)
T PRK06264 152 IKPKLVVGVPVGFVKAAESKEALRN-TNIPSIS----T---IGPKGGT----PVAVSIINGIIALSKNER 209 (210)
T ss_pred CCCcEEEEeCCccccHHHHHHHHHh-CCCCEEE----E---ecCCCcH----HHHHHHHHHHHHHhccCC
Confidence 4568889999999888778899976 4555553 3 2224566 458999999999987765
No 8
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=18.54 E-value=87 Score=27.81 Aligned_cols=26 Identities=12% Similarity=0.526 Sum_probs=21.0
Q ss_pred ccccCCCCcccchhHHHHHHhhhcCCC
Q 044902 224 FKQGFPSGMRLGKDFKGRVKEWQRLPY 250 (389)
Q Consensus 224 F~~~fp~Gf~l~k~~~~~l~~fQ~LPy 250 (389)
+.|++-+ --++.++-+.+..||+.||
T Consensus 91 Veik~~~-~PIDP~VIaAIHHwQk~Pf 116 (122)
T PF04530_consen 91 VEIKLAP-VPIDPEVIAAIHHWQKYPF 116 (122)
T ss_pred eEEecCC-CCCCHHHHHHHHHHHhCCC
Confidence 4455555 6678899999999999998
No 9
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=14.53 E-value=1.6e+02 Score=27.80 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=29.9
Q ss_pred ccHHHHHhhCCcceEEecC-------CCCCCCcccCcHHHHHHHHHHHHHHHHchHH----------HHHHHHH----Hh
Q 044902 86 RGATAFLRKYPHIFHIFYD-------PVKSQPFCKLTETAVEISRQEAEAINACLSL----------VVERLVR----LL 144 (389)
Q Consensus 86 ~~~~~FlrkyP~iF~~~~~-------~~~~~p~~rLT~~a~~L~~eE~~v~~~~e~~----------~v~rLrK----LL 144 (389)
..|.+||+++|..|..+.+ |.....-+.|.+...+.++++.+-+++.-.. +..++.. ||
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL 88 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELRLPHPSGGAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLVLALL 88 (225)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588889988888887652 1111124788888888888887766543222 2233333 22
Q ss_pred cccCCCccchHHHHHHHHhcCCCc
Q 044902 145 SMSTSKSLPLRAVFKVWRELGLPD 168 (389)
Q Consensus 145 MMS~~rrLpL~kl~~lr~dLGLP~ 168 (389)
--..-..++-.-...++.+|+++.
T Consensus 89 ~a~sl~~l~~~L~~~l~~~f~~~~ 112 (225)
T PF04340_consen 89 AARSLQELLQALDDGLREDFDVDA 112 (225)
T ss_dssp C--SHHHHHHHHHHHHHHTS--SE
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCe
Confidence 222223444445556666666664
No 10
>PRK10870 transcriptional repressor MprA; Provisional
Probab=14.40 E-value=9.1e+02 Score=21.88 Aligned_cols=67 Identities=21% Similarity=0.058 Sum_probs=35.4
Q ss_pred HHHhcCCCCCCCccHHHHHhhcccccCccc-HHHHHh---hCCcceEEecCC-CCCCCcccCcHHHHHHHHHHHHHHH
Q 044902 58 DLILANRNSPPSVSLEFLSRLSQKLHLNRG-ATAFLR---KYPHIFHIFYDP-VKSQPFCKLTETAVEISRQEAEAIN 130 (389)
Q Consensus 58 ~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~~-~~~Flr---kyP~iF~~~~~~-~~~~p~~rLT~~a~~L~~eE~~v~~ 130 (389)
..|...++ +.++...|++ .+|++.. +...|. +- ++=+-..+| .++.-.+.||++|.+++.+=.....
T Consensus 62 ~~L~~~~~--~~it~~eLa~---~l~l~~~tvsr~v~rLe~k-GlV~R~~~~~DrR~~~v~LT~~G~~~~~~i~~~~~ 133 (176)
T PRK10870 62 ITLESQEN--HSIQPSELSC---ALGSSRTNATRIADELEKR-GWIERRESDNDRRCLHLQLTEKGHEFLREVLPPQH 133 (176)
T ss_pred HHHhcCCC--CCcCHHHHHH---HHCCCHHHHHHHHHHHHHC-CCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 33334444 4445444444 7888433 332222 22 222222333 3566789999999999877444333
Done!