Query 044902
Match_columns 389
No_of_seqs 139 out of 188
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:44:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 52.3 3.9 0.00013 38.0 0.8 117 55-186 57-180 (270)
2 4fp9_B Mterf domain-containing 52.0 9 0.00031 37.5 3.4 85 81-184 55-143 (335)
3 3m66_A Mterf3, mterf domain-co 43.7 7.3 0.00025 36.1 1.2 85 280-367 138-232 (270)
4 4fp9_B Mterf domain-containing 38.3 3.5 0.00012 40.5 -2.0 119 55-186 62-181 (335)
5 3mva_O Transcription terminati 25.1 20 0.0007 34.4 0.9 91 80-184 59-153 (343)
6 3eco_A MEPR; mutlidrug efflux 23.5 2.7E+02 0.0091 21.8 8.2 72 53-130 33-109 (139)
7 3jw4_A Transcriptional regulat 22.5 2.2E+02 0.0074 22.7 6.7 89 36-130 26-119 (148)
8 3fm5_A Transcriptional regulat 21.7 2.4E+02 0.008 22.5 6.8 70 54-130 42-116 (150)
9 3bro_A Transcriptional regulat 21.5 2.7E+02 0.0094 21.6 7.1 71 54-130 37-112 (141)
10 3e98_A GAF domain of unknown f 21.3 79 0.0027 29.4 4.1 82 87-168 35-137 (252)
11 2rr3_B OSBP, oxysterol-binding 20.1 44 0.0015 23.6 1.5 14 376-389 7-20 (47)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=52.35 E-value=3.9 Score=37.97 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCCCCCccHHHHHh---hcccccCc-ccHHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHHHHHHHH
Q 044902 55 SVQDLILANRNSPPSVSLEFLSR---LSQKLHLN-RGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAIN 130 (389)
Q Consensus 55 ~lk~lI~s~P~~~~~~~l~~l~k---~~~~Lgl~-~~~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 130 (389)
.|..+|.++|.- =..+++.+.. +-+.+|++ ..+...+.++|.++..-.. ++.+...-| .++.-
T Consensus 57 ~i~~il~~~P~l-L~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~--------~l~~~v~~L-~~~lG--- 123 (270)
T 3m66_A 57 QLGAFLTKNHAI-FSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE--------RLDNRLGFF-QKELE--- 123 (270)
T ss_dssp GHHHHHHHCTTG-GGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH--------HHHHHHHHH-HHHHC---
T ss_pred HHHHHHHhCChh-hhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH--------HHHHHHHHH-HHHhC---
Confidence 356677777741 1223332211 11257885 5688999999998852111 222222222 11111
Q ss_pred HchHHHHHHHH---HHhcccCCCccchHHHHHHHHhcCCCcccchhccccCCCceEEec
Q 044902 131 ACLSLVVERLV---RLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCA 186 (389)
Q Consensus 131 ~~e~~~v~rLr---KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frlv~ 186 (389)
-...+++.-+. .+|.+|.++. -.++.-+...+|++++=...++.++|..+....
T Consensus 124 ~~~~~i~~ll~~~P~il~~s~e~~--~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~ 180 (270)
T 3m66_A 124 LSVKKTRDLVVRLPRLLTGSLEPV--KENMKVYRLELGFKHNEIQHMITRIPKMLTANK 180 (270)
T ss_dssp CCHHHHHHHHHHSGGGGTSCSHHH--HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH
T ss_pred CCHHHHHHHHHhCCcceeechHHH--HHHHHHHHHHcCCCHHHHHHHHHhCChhheecH
Confidence 11233333344 6888887642 345666778999999988889999999886654
No 2
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=52.00 E-value=9 Score=37.51 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=55.4
Q ss_pred cccC-cccHHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHHHHHHHHHchHHHHHHHHH---HhcccCCCccchHH
Q 044902 81 KLHL-NRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVR---LLSMSTSKSLPLRA 156 (389)
Q Consensus 81 ~Lgl-~~~~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~~e~~~v~rLrK---LLMMS~~rrLpL~k 156 (389)
.+|+ +..+..+|.++|.++..- + ..++ .+...+.-...+++.-|+| +|++|..+ | -.+
T Consensus 55 d~Gfs~~~i~~il~~~P~il~~~-----------l----~~~i-~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L-~~~ 116 (335)
T 4fp9_B 55 DMGFSNAHINELLSVRRGASLQQ-----------L----LDII-SEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-M-RKR 116 (335)
T ss_dssp HTTCCHHHHHHHHHHCSSCCHHH-----------H----HHHH-HHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-H-HHH
T ss_pred HCCCCHHHHHHHHHhCcccchhH-----------H----HHHH-HHHHHcCCCHHHHHHHHHhChhhccCCHHH-H-HHH
Confidence 5888 466999999999986321 1 1111 1111111123445555555 88888865 2 357
Q ss_pred HHHHHHhcCCCcccchhccccCCCceEE
Q 044902 157 VFKVWRELGLPDDFEDSVIARNPKIFRR 184 (389)
Q Consensus 157 l~~lr~dLGLP~DF~~~lv~~yP~~Frl 184 (389)
|..++. +||+.+-...++.++|+.+..
T Consensus 117 l~fL~~-lGl~~~~i~~ll~~~P~lL~~ 143 (335)
T 4fp9_B 117 SSYLQK-LGLGEGKLKRVLYCCPEIFTM 143 (335)
T ss_dssp HHHHHH-TTCTTTTHHHHHHHCGGGGTS
T ss_pred HHHHHH-cCCCHHHHHHHHHhCchhhcc
Confidence 777865 999999889999999998754
No 3
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=43.66 E-value=7.3 Score=36.09 Aligned_cols=85 Identities=20% Similarity=0.321 Sum_probs=56.1
Q ss_pred HHhhccchhhhhhhHHHhhHHhhCCcHH-HHHHHhhCCCcEEEeeeC-CeeeEEEee--cccCCCccCCCc------hhH
Q 044902 280 EFLSLTVEKMVEVEKISHFRKWFGIDFN-IRDLFLDHPGIFYLSTKG-KRHTVFLRE--AYERGQLIEPNP------VYD 349 (389)
Q Consensus 280 ELLSLTveKr~~~~~L~~fr~efgLp~k-~~~~l~rHPgIFYvS~Kg-~~~TVfLRE--AY~~g~Liek~P------l~~ 349 (389)
.+|.+.+++ ...++.-|.+++|++.. +..++.++|.|+..|.+. +...-||.+ |+.... |-++| +-.
T Consensus 138 ~il~~s~e~--~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~-i~~~P~~l~~Sler 214 (270)
T 3m66_A 138 RLLTGSLEP--VKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHI-IVKFPQVFNTRLFK 214 (270)
T ss_dssp GGGTSCSHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHH-HHHCGGGGGSCHHH
T ss_pred cceeechHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHH-HHhCchHhhCCHHH
Confidence 677777775 34566668899999985 667899999999999641 122334432 333333 33455 337
Q ss_pred HHHHHHHHHHcccCCCCC
Q 044902 350 VRRKLLDLVFLGRHGSVT 367 (389)
Q Consensus 350 ir~K~~~Lm~~grr~~~~ 367 (389)
++.|+.-|...++++...
T Consensus 215 i~pR~~~l~~L~~~g~~~ 232 (270)
T 3m66_A 215 VKERHLFLTYLGRAQYDP 232 (270)
T ss_dssp HHHHHHHHHHHTCCCCCT
T ss_pred HHHHHHHHHHhhccCCCC
Confidence 888887787788877643
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=38.34 E-value=3.5 Score=40.48 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHHHHhcCCCCCCCccHHHHHhhcccccCc-ccHHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHHHHHHHHHch
Q 044902 55 SVQDLILANRNSPPSVSLEFLSRLSQKLHLN-RGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACL 133 (389)
Q Consensus 55 ~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~-~~~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~~e 133 (389)
+|..+|..+|.. .-..+..+-..-..||++ ..+...|.++|.|+..... +|.+...-| ++.-+-...-
T Consensus 62 ~i~~il~~~P~i-l~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e--------~L~~~l~fL--~~lGl~~~~i 130 (335)
T 4fp9_B 62 HINELLSVRRGA-SLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM--------QMRKRSSYL--QKLGLGEGKL 130 (335)
T ss_dssp HHHHHHHHCSSC-CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH--------HHHHHHHHH--HHTTCTTTTH
T ss_pred HHHHHHHhCccc-chhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH--------HHHHHHHHH--HHcCCCHHHH
Confidence 678899999962 111111111122358996 5599999999999864321 344443333 1111111112
Q ss_pred HHHHHHHHHHhcccCCCccchHHHHHHHHhcCCCcccchhccccCCCceEEec
Q 044902 134 SLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCA 186 (389)
Q Consensus 134 ~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frlv~ 186 (389)
..++.+.-.+|.+|..+ -...+..++..+|+..+=...++.++|..+....
T Consensus 131 ~~ll~~~P~lL~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~ 181 (335)
T 4fp9_B 131 KRVLYCCPEIFTMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL 181 (335)
T ss_dssp HHHHHHCGGGGTSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH
T ss_pred HHHHHhCchhhccChHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH
Confidence 33444445577777653 2345567888999999988999999999886643
No 5
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=25.11 E-value=20 Score=34.41 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=55.5
Q ss_pred ccccCc-ccHHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHHHHHHHHHchHHHHHHHHH---HhcccCCCccchH
Q 044902 80 QKLHLN-RGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVR---LLSMSTSKSLPLR 155 (389)
Q Consensus 80 ~~Lgl~-~~~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~~e~~~v~rLrK---LLMMS~~rrLpL~ 155 (389)
+.+|++ ..+...+.+||.++... +. .+.|.-.-| +-+--..++++.-|.+ +|+-|.+..--..
T Consensus 59 ~~~G~s~~~i~~iv~~~P~lL~~~--~~------~l~p~l~fL-----~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p 125 (343)
T 3mva_O 59 LSKGASKEVIASIISRYPRAITRT--PE------NLSKRWDLW-----RKIVTSDLEIVNILERSPESFFRSNNNLNLEN 125 (343)
T ss_dssp HHTTCCHHHHHHHHHHCGGGGGCC--HH------HHHHHHHHH-----TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHH
T ss_pred HHcCCCHHHHHHHHHhCcHHHhCC--HH------HHHHHHHHH-----HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHH
Confidence 378996 55999999999998532 11 122211111 0011123344444333 4555655323344
Q ss_pred HHHHHHHhcCCCcccchhccccCCCceEE
Q 044902 156 AVFKVWRELGLPDDFEDSVIARNPKIFRR 184 (389)
Q Consensus 156 kl~~lr~dLGLP~DF~~~lv~~yP~~Frl 184 (389)
.|+.++ ++|+|.+-...++.++|..|..
T Consensus 126 ~v~fL~-~lGl~~~~i~~ll~~~P~il~~ 153 (343)
T 3mva_O 126 NIKFLY-SVGLTRKCLCRLLTNAPRTFSN 153 (343)
T ss_dssp HHHHHH-HTTCCHHHHHHHHHHCGGGGTS
T ss_pred HHHHHH-HhCCCHHHHHHHHHhCChhhee
Confidence 778887 8999999999999999998854
No 6
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.48 E-value=2.7e+02 Score=21.76 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHhhcccccCccc----HHHHHhhCCcceEEecCCC-CCCCcccCcHHHHHHHHHHHH
Q 044902 53 VISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRG----ATAFLRKYPHIFHIFYDPV-KSQPFCKLTETAVEISRQEAE 127 (389)
Q Consensus 53 vl~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~~----~~~FlrkyP~iF~~~~~~~-~~~p~~rLT~~a~~L~~eE~~ 127 (389)
-..+-..|..+|+ .-++...+.+ .+|++.. +..=|.+- ++-+...+|. ++.-.+.||++|.++..+-..
T Consensus 33 ~~~vL~~l~~~~~--~~~t~~ela~---~l~~~~~tvs~~l~~Le~~-Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 106 (139)
T 3eco_A 33 QGHTLGYLYAHQQ--DGLTQNDIAK---ALQRTGPTVSNLLRNLERK-KLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTS 106 (139)
T ss_dssp HHHHHHHHHHSTT--TCEEHHHHHH---HHTCCHHHHHHHHHHHHHT-TSEEEEECCC--CCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCcCHHHHHH---HhCCCcccHHHHHHHHHHC-CCEeecCCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 3455566667763 3346555554 7888522 33333443 3444444443 456678999999999876544
Q ss_pred HHH
Q 044902 128 AIN 130 (389)
Q Consensus 128 v~~ 130 (389)
...
T Consensus 107 ~~~ 109 (139)
T 3eco_A 107 IFD 109 (139)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 7
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=22.48 E-value=2.2e+02 Score=22.71 Aligned_cols=89 Identities=9% Similarity=-0.027 Sum_probs=40.4
Q ss_pred CChhHHHHHhhhcchhHHHHHHHHHhcCCCCCCCccHHHHHhhcccccCccc-HHHH---HhhCCcceEEecCC-CCCCC
Q 044902 36 RDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRG-ATAF---LRKYPHIFHIFYDP-VKSQP 110 (389)
Q Consensus 36 rD~~lD~~i~~~k~lk~vl~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~~-~~~F---lrkyP~iF~~~~~~-~~~~p 110 (389)
-...++..+....--..-..+...|..+|+ +-++...+.+ .+|++.. +... |.+-=-|=.. .+| .++.-
T Consensus 26 ~~~~~~~~~~~~glt~~q~~vL~~l~~~~~--~~~t~~eLa~---~l~~~~~~vs~~l~~L~~~Glv~r~-~~~~DrR~~ 99 (148)
T 3jw4_A 26 LKTSADARLAELGLNSQQGRMIGYIYENQE--SGIIQKDLAQ---FFGRRGASITSMLQGLEKKGYIERR-IPENNARQK 99 (148)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHTT--TCCCHHHHHH---C------CHHHHHHHHHHTTSBCCC---------C
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhCCC--CCCCHHHHHH---HHCCChhHHHHHHHHHHHCCCEEee-CCCCCchhh
Confidence 344555554433222333455556666653 3346555555 8888432 3332 3332222222 122 34556
Q ss_pred cccCcHHHHHHHHHHHHHHH
Q 044902 111 FCKLTETAVEISRQEAEAIN 130 (389)
Q Consensus 111 ~~rLT~~a~~L~~eE~~v~~ 130 (389)
++.||++|.++..+-.....
T Consensus 100 ~~~LT~~G~~~~~~~~~~~~ 119 (148)
T 3jw4_A 100 NIYVLPKGAALVEEFNNIFL 119 (148)
T ss_dssp CCCBCHHHHHHHHHHHHHHH
T ss_pred eeeECHHHHHHHHHHHHHHH
Confidence 78999999999877555444
No 8
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=21.71 E-value=2.4e+02 Score=22.54 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHhhcccccCccc-HHH---HHhhCCcceEEecCC-CCCCCcccCcHHHHHHHHHHHHH
Q 044902 54 ISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRG-ATA---FLRKYPHIFHIFYDP-VKSQPFCKLTETAVEISRQEAEA 128 (389)
Q Consensus 54 l~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~~-~~~---FlrkyP~iF~~~~~~-~~~~p~~rLT~~a~~L~~eE~~v 128 (389)
..+...|..+++ + ++...|.+ .+|++.. +.. =|.+- ++-+-..+| .++.-++.||++|.+++.+=...
T Consensus 42 ~~vL~~l~~~~~--~-~t~~eLa~---~l~i~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~ 114 (150)
T 3fm5_A 42 YSVLVLACEQAE--G-VNQRGVAA---TMGLDPSQIVGLVDELEER-GLVVRTLDPSDRRNKLIAATEEGRRLRDDAKAR 114 (150)
T ss_dssp HHHHHHHHHSTT--C-CCSHHHHH---HHTCCHHHHHHHHHHHHTT-TSEEC-----------CEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--C-cCHHHHHH---HHCCCHhHHHHHHHHHHHC-CCEEeeCCccccchheeeECHHHHHHHHHHHHH
Confidence 444456666665 4 45555544 7888532 333 23333 233333333 34556789999999988765444
Q ss_pred HH
Q 044902 129 IN 130 (389)
Q Consensus 129 ~~ 130 (389)
..
T Consensus 115 ~~ 116 (150)
T 3fm5_A 115 VD 116 (150)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=21.49 E-value=2.7e+02 Score=21.60 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHhhcccccCccc----HHHHHhhCCcceEEecCC-CCCCCcccCcHHHHHHHHHHHHH
Q 044902 54 ISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRG----ATAFLRKYPHIFHIFYDP-VKSQPFCKLTETAVEISRQEAEA 128 (389)
Q Consensus 54 l~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~~----~~~FlrkyP~iF~~~~~~-~~~~p~~rLT~~a~~L~~eE~~v 128 (389)
..+-..|..+|+ ..++...+.+ .+|++.. +..=|.+- ++-+...+| .++.-++.||++|.++..+=...
T Consensus 37 ~~iL~~l~~~~~--~~~~~~ela~---~l~~~~~tvs~~l~~Le~~-Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~~~ 110 (141)
T 3bro_A 37 MTIIDYLSRNKN--KEVLQRDLES---EFSIKSSTATVLLQRMEIK-KLLYRKVSGKDSRQKCLKLTKKANKLETIILSY 110 (141)
T ss_dssp HHHHHHHHHTTT--SCCBHHHHHH---HHTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTSEEEEECHHHHTTHHHHHHH
T ss_pred HHHHHHHHHCCC--CCcCHHHHHH---HHCCCcchHHHHHHHHHHC-CCEEeeCCCcCCCeeeeEECHHHHHHHHHHHHH
Confidence 445566667764 3456666555 7888532 33334444 333444444 34556789999999887665444
Q ss_pred HH
Q 044902 129 IN 130 (389)
Q Consensus 129 ~~ 130 (389)
..
T Consensus 111 ~~ 112 (141)
T 3bro_A 111 MD 112 (141)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 10
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.27 E-value=79 Score=29.45 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=32.0
Q ss_pred cHHHHHhhCCcceEEecC-------CCCCCCcccCcHHHHHHHHHHHHHHHHc---------h-HHHHHHHHHH---hcc
Q 044902 87 GATAFLRKYPHIFHIFYD-------PVKSQPFCKLTETAVEISRQEAEAINAC---------L-SLVVERLVRL---LSM 146 (389)
Q Consensus 87 ~~~~FlrkyP~iF~~~~~-------~~~~~p~~rLT~~a~~L~~eE~~v~~~~---------e-~~~v~rLrKL---LMM 146 (389)
.|.+||+.+|..|..+.+ |.....-+.|.+...+..+++.+-+++. + ..+..++.++ |+-
T Consensus 35 ~V~~yL~~~PdFf~~~~~Ll~~L~lph~~~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~ 114 (252)
T 3e98_A 35 QVAAYLSQHPEFFVEHDELIPELRIPHQPGDAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLD 114 (252)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHhhCHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488999999999987653 2111134788888888777765554432 1 2333333332 333
Q ss_pred cCC-CccchHHHHHHHHhcCCCc
Q 044902 147 STS-KSLPLRAVFKVWRELGLPD 168 (389)
Q Consensus 147 S~~-rrLpL~kl~~lr~dLGLP~ 168 (389)
+.+ ..++-.-...++.+||+|.
T Consensus 115 a~sl~~l~~~L~~~l~~~F~l~~ 137 (252)
T 3e98_A 115 ATSLEDVVSTVEDSLRHEFQVPY 137 (252)
T ss_dssp CCSHHHHHHHHHHHHHHTSCCSE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCe
Confidence 333 3333333378888999996
No 11
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=20.14 E-value=44 Score=23.65 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=9.5
Q ss_pred ccCCCCCcccccCC
Q 044902 376 GTRGDSESEDENNE 389 (389)
Q Consensus 376 ~~~~~~~~~~~~~~ 389 (389)
..-|+..||||+||
T Consensus 7 ~~KGe~SdEDed~E 20 (47)
T 2rr3_B 7 WGKGDMSDEDDENE 20 (47)
T ss_dssp CCCCCSCCCCCSSC
T ss_pred cccccccccccccc
Confidence 34677777777775
Done!