Query 044902
Match_columns 389
No_of_seqs 139 out of 188
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 13:45:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044902.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044902hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 51.3 20 0.0015 27.2 7.1 88 39-131 17-108 (135)
2 d3ctaa1 a.4.5.28 (A:5-89) Ta10 20.5 16 0.0012 26.5 1.2 56 68-129 20-79 (85)
3 d2a61a1 a.4.5.28 (A:5-143) Tra 19.8 92 0.0067 23.3 5.9 58 71-131 46-107 (139)
4 d1sfka_ a.190.1.1 (A:) Flavivi 18.6 21 0.0015 26.0 1.4 19 285-303 47-65 (73)
5 d2etha1 a.4.5.28 (A:1-140) Put 17.2 1.1E+02 0.0081 22.8 5.8 69 56-131 37-109 (140)
6 d2frha1 a.4.5.28 (A:102-216) P 16.5 81 0.0059 23.3 4.7 62 58-124 40-105 (115)
7 d1hsja1 a.4.5.28 (A:373-487) S 13.7 1.8E+02 0.013 21.2 6.1 65 56-125 37-105 (115)
8 d2hr3a1 a.4.5.28 (A:2-146) Pro 12.5 2.6E+02 0.019 20.6 8.5 62 57-125 40-106 (145)
9 d2fbia1 a.4.5.28 (A:5-140) Pro 11.9 2.6E+02 0.019 20.3 7.4 70 55-131 34-107 (136)
10 d1gpma1 c.26.2.1 (A:208-404) G 10.3 56 0.0041 25.0 2.0 23 291-316 173-195 (197)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=51.28 E-value=20 Score=27.18 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=55.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHhcCCCCCCCccHHHHHhhcccccCcc----cHHHHHhhCCcceEEecCCCCCCCcccC
Q 044902 39 TFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNR----GATAFLRKYPHIFHIFYDPVKSQPFCKL 114 (389)
Q Consensus 39 ~lD~~i~~~k~lk~vl~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~----~~~~FlrkyP~iF~~~~~~~~~~p~~rL 114 (389)
.+|..+...---..-..+-..|..+|+ ..++...+++ .+|+.. ++..-|.+-=-|-.......++...+.|
T Consensus 17 ~~~~~l~~~glt~~q~~vL~~l~~~~~--~~it~~ela~---~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~l 91 (135)
T d3broa1 17 RFDIFAKKYDLTGTQMTIIDYLSRNKN--KEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKL 91 (135)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTTT--SCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCC--CCCCHHHHHH---HHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 344444443333344456667777887 6677766666 778842 3555666666666665444566778999
Q ss_pred cHHHHHHHHHHHHHHHH
Q 044902 115 TETAVEISRQEAEAINA 131 (389)
Q Consensus 115 T~~a~~L~~eE~~v~~~ 131 (389)
|++|.++..+=.....+
T Consensus 92 T~~G~~~~~~~~~~~~~ 108 (135)
T d3broa1 92 TKKANKLETIILSYMDS 108 (135)
T ss_dssp CHHHHTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999987765554443
No 2
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=20.51 E-value=16 Score=26.48 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=32.4
Q ss_pred CCccHHHHHhhcccccCc-ccHHHHHhh---CCcceEEecCCCCCCCcccCcHHHHHHHHHHHHHH
Q 044902 68 PSVSLEFLSRLSQKLHLN-RGATAFLRK---YPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAI 129 (389)
Q Consensus 68 ~~~~l~~l~k~~~~Lgl~-~~~~~Flrk---yP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 129 (389)
.-++...|++ .+|++ ..+...|.+ -=-|-. .+.++.-++.||++|.+++.++...+
T Consensus 20 ~~lt~~eLa~---~l~i~~~~vs~~l~~Le~~GlV~r---~~D~R~~~i~LT~~G~~~l~~~~~~~ 79 (85)
T d3ctaa1 20 AYLTSSKLAD---MLGISQQSASRIIIDLEKNGYITR---TVTKRGQILNITEKGLDVLYTEFADL 79 (85)
T ss_dssp EECCHHHHHH---HHTSCHHHHHHHHHHHHHTTSEEE---EEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCeee---ecccccccceECHHHHHHHHHHHHHH
Confidence 3456555555 78884 334444332 222222 12345567899999999988875433
No 3
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=19.81 E-value=92 Score=23.30 Aligned_cols=58 Identities=16% Similarity=0.027 Sum_probs=37.6
Q ss_pred cHHHHHhhcccccCcc----cHHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHHHHHHHHH
Q 044902 71 SLEFLSRLSQKLHLNR----GATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINA 131 (389)
Q Consensus 71 ~l~~l~k~~~~Lgl~~----~~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~ 131 (389)
++..+.+ .+|++. ++..-|.+-=-|-..-....++..++.||+.|.+++.+=......
T Consensus 46 t~~~la~---~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~ 107 (139)
T d2a61a1 46 RPGELSV---LLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERREN 107 (139)
T ss_dssp CHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH---HhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 5555544 889853 355555556666555443346678899999999987765544443
No 4
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=18.58 E-value=21 Score=25.96 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=17.2
Q ss_pred cchhhhhhhHHHhhHHhhC
Q 044902 285 TVEKMVEVEKISHFRKWFG 303 (389)
Q Consensus 285 TveKr~~~~~L~~fr~efg 303 (389)
+|+|...+.+|..|++|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 5789999999999999986
No 5
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=17.23 E-value=1.1e+02 Score=22.75 Aligned_cols=69 Identities=12% Similarity=0.018 Sum_probs=41.5
Q ss_pred HHHHHhcCCCCCCCccHHHHHhhcccccCccc----HHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHHHHHHHHH
Q 044902 56 VQDLILANRNSPPSVSLEFLSRLSQKLHLNRG----ATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINA 131 (389)
Q Consensus 56 lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~~----~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~ 131 (389)
+-..|..+|+ . ++. .+...+|++.. +.+=|.+-=-|=..-.+..++.-++.||++|.+++.+-......
T Consensus 37 iL~~l~~~~~--~--t~~---~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~ 109 (140)
T d2etha1 37 AFLYVALFGP--K--KMK---EIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNFES 109 (140)
T ss_dssp HHHHHHHHCC--B--CHH---HHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--c--CHH---HHHHHHCcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHHHHHHHHHH
Confidence 3344555554 2 444 44558888532 34444444445444434356777899999999998877665543
No 6
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=16.46 E-value=81 Score=23.27 Aligned_cols=62 Identities=10% Similarity=-0.002 Sum_probs=39.6
Q ss_pred HHHhcCCCCCCCccHHHHHhhcccccCc----ccHHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHH
Q 044902 58 DLILANRNSPPSVSLEFLSRLSQKLHLN----RGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQ 124 (389)
Q Consensus 58 ~lI~s~P~~~~~~~l~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~e 124 (389)
..|..+|+ ..+++..+.+ .++++ .++..-|.+---|-..-.+..++.-++.||++|.+.+++
T Consensus 40 ~~l~~~~~--~~~t~~~la~---~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 40 TYISENKE--KEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHTCC--SEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHcCCC--CCCCHHHHHH---HHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHH
Confidence 45667776 5566655555 88884 235555566655544433334567789999999887654
No 7
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=13.75 E-value=1.8e+02 Score=21.23 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=39.3
Q ss_pred HHHHHhcCCCCCCCccHHHHHhhcccccCccc----HHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHHH
Q 044902 56 VQDLILANRNSPPSVSLEFLSRLSQKLHLNRG----ATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQE 125 (389)
Q Consensus 56 lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~~----~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE 125 (389)
+...|..+++ +.+++..+++ .+|+... +..=|.+-=-|=....+..++.-++.||++|.+++.+=
T Consensus 37 vL~~l~~~~~--~~~t~~ela~---~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 105 (115)
T d1hsja1 37 ILNHILRSES--NEISSKEIAK---CSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 105 (115)
T ss_dssp HHHHHHTCSC--SEEEHHHHHH---SSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred HHHHHHccCC--CCcCHHHHHH---HHCCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHHHH
Confidence 4445555565 4567666655 8888422 44444444444333333346778899999999987653
No 8
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.45 E-value=2.6e+02 Score=20.61 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=35.4
Q ss_pred HHHHhcCCCCCCCccHHHHHhhcccccCcc----cHHHHHhhCCcceEEecCC-CCCCCcccCcHHHHHHHHHH
Q 044902 57 QDLILANRNSPPSVSLEFLSRLSQKLHLNR----GATAFLRKYPHIFHIFYDP-VKSQPFCKLTETAVEISRQE 125 (389)
Q Consensus 57 k~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~----~~~~FlrkyP~iF~~~~~~-~~~~p~~rLT~~a~~L~~eE 125 (389)
-..|...|+ + +++..|++ .+|+.. ++..-|.+-=-| +-..+| .++.-++.||++|.+++.+-
T Consensus 40 L~~L~~~~g--~-~t~~~La~---~~~~~~~~vs~~i~~L~~~glv-~r~~~~~DrR~~~i~LT~~G~~~~~~~ 106 (145)
T d2hr3a1 40 LGAIDRLGG--D-VTPSELAA---AERMRSSNLAALLRELERGGLI-VRHADPQDGRRTRVSLSSEGRRNLYGN 106 (145)
T ss_dssp HHHHHHTTS--C-BCHHHHHH---HTTCCHHHHHHHHHHHHHTTSE-EEEC------CCEEEECHHHHHHHHHH
T ss_pred HHHHHHcCC--C-CCHHHHHH---HHCCCHHHHHHHHHHHHHcCCe-EeeeCccchhHHHhccCHHHHHHHHHH
Confidence 334445554 3 56655555 888853 355555555555 333344 35667899999999987663
No 9
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.94 E-value=2.6e+02 Score=20.34 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCCCCccHHHHHhhcccccCccc----HHHHHhhCCcceEEecCCCCCCCcccCcHHHHHHHHHHHHHHH
Q 044902 55 SVQDLILANRNSPPSVSLEFLSRLSQKLHLNRG----ATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAIN 130 (389)
Q Consensus 55 ~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~~~----~~~FlrkyP~iF~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 130 (389)
.+-..|..+++ +++..+.+ .+|+... +..-|.+-=-|=.......++.-++.||++|.++..+=.....
T Consensus 34 ~vL~~l~~~~~----~t~~~la~---~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~ 106 (136)
T d2fbia1 34 RVIRILRQQGE----MESYQLAN---QACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDME 106 (136)
T ss_dssp HHHHHHHHHCS----EEHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC----CCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHHHHHHHHH
Confidence 33445555443 35555444 8888422 4444455444433332323566789999999999877555444
Q ss_pred H
Q 044902 131 A 131 (389)
Q Consensus 131 ~ 131 (389)
+
T Consensus 107 ~ 107 (136)
T d2fbia1 107 K 107 (136)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=10.35 E-value=56 Score=24.96 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=17.7
Q ss_pred hhhHHHhhHHhhCCcHHHHHHHhhCC
Q 044902 291 EVEKISHFRKWFGIDFNIRDLFLDHP 316 (389)
Q Consensus 291 ~~~~L~~fr~efgLp~k~~~~l~rHP 316 (389)
..+.+..+.+++|||..+. .|||
T Consensus 173 ~K~eV~~lA~~lglP~~i~---~~~p 195 (197)
T d1gpma1 173 FKDEVRKIGLELGLPYDML---YRHP 195 (197)
T ss_dssp CHHHHHHHHHHTTCCHHHH---TSCC
T ss_pred cHHHHHHHHHHcCCCHHHh---CCCC
Confidence 4456777889999999955 4887
Done!