BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044903
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
           Provides The Binding Site For Lasp-1 That Is Necessary
           For Pseudopodia Extension
          Length = 318

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 49/245 (20%)

Query: 63  LHNVCHSWRRLIYSPSFPPFLSL-------YALFSPKSNSSSTPIHLFTFDPVSSTWXXX 115
           L NV   W  L   PS      L       Y +      + ++   +  +DPV++ W   
Sbjct: 83  LDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142

Query: 116 XXXXXXXXXXXXXXXXSFLSRNLPVQL-----VSLSGKLILLAATTHNFNPALTRPLIFD 170
                               +NLP+++     +S +G +  L   T +      R  I++
Sbjct: 143 --------------------KNLPIKVYGHNVISHNGMIYCLGGKTDD-KKCTNRVFIYN 181

Query: 171 PICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRW 230
           P    W     + TPR        +G + +A G+       ++ SVE +DL    K ++W
Sbjct: 182 PKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVT---EDGLSASVEAFDL----KTNKW 234

Query: 231 EKTGELKDGRFSREAIDAVG---WKGKLCLVNVKGAEGAVYDVVANTW---DDMRE--GM 282
           E   E    R S   +   G     G   ++ ++  E A  + V + W   DD +E  GM
Sbjct: 235 EVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTE-VNDIWKYEDDKKEWAGM 293

Query: 283 VRGWR 287
           ++  R
Sbjct: 294 LKEIR 298


>pdb|4EVD|A Chain A, Crystal Structure Hp-Nap From Strain Ys29 Cadmium Loaded
           (Cocrystallization 50mm)
 pdb|4EVE|A Chain A, Crystal Structure Hp-Nap From Strain Ys29 In Apo Form
          Length = 164

 Score = 31.2 bits (69), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 259 NVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV-LYGIDENSCT--LSK--YDE 313
           NV  A   +Y+  A+ +DD+ E +V+    P+  + E + L  + E + T   SK  + E
Sbjct: 55  NVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKE 114

Query: 314 VMDDWKEVVKS 324
           +++D+K + K 
Sbjct: 115 ILEDYKHLEKE 125


>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
          Length = 306

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 21/126 (16%)

Query: 160 NPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASG-IGSQFSSDVAKSV 216
           N AL     +D    +W   P ++T R  C+ G   + G +YV  G +G+  S  V  S 
Sbjct: 114 NSALYLFECYDTRTESWHTKPSMLTQR--CSHGMVEANGLIYVCGGSLGNNVSGRVLNSC 171

Query: 217 EKWDLMNGEKNSRWEKTGELKDGR------FSREAIDAVGWKGKL-CLVNVKGAEGAVYD 269
           E +D         W +   + + R      F ++ I AVG +  L  L NV+      YD
Sbjct: 172 EVYD----PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE-----YYD 222

Query: 270 VVANTW 275
           +  N W
Sbjct: 223 IKLNEW 228


>pdb|2UVK|A Chain A, Structure Of Yjht
 pdb|2UVK|B Chain B, Structure Of Yjht
          Length = 357

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 193 YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWK 252
           Y  G  Y   G+   +S+D+      W       N +W+K+GEL  GR    ++    W 
Sbjct: 270 YQNGKNYAHEGLKKSYSTDI----HLW------HNGKWDKSGELSQGRAYGVSLP---WN 316

Query: 253 GKLCLVNVKGAEG-AVYDVVANTWDDMR 279
             L ++  + A G AV D V  T  D +
Sbjct: 317 NSLLIIGGETAGGKAVTDSVLITVKDNK 344


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,874,308
Number of Sequences: 62578
Number of extensions: 378337
Number of successful extensions: 976
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 5
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)