Query 044903
Match_columns 387
No_of_seqs 237 out of 2638
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 6.9E-37 1.5E-41 302.6 27.6 245 101-376 273-549 (557)
2 KOG4441 Proteins containing BT 100.0 1.8E-36 3.9E-41 298.4 29.3 292 43-366 228-552 (571)
3 PLN02153 epithiospecifier prot 100.0 1.3E-31 2.9E-36 251.5 30.7 256 84-356 34-339 (341)
4 KOG4441 Proteins containing BT 100.0 3.9E-32 8.4E-37 267.8 26.0 241 66-334 309-566 (571)
5 PHA03098 kelch-like protein; P 100.0 1.2E-31 2.6E-36 266.9 29.3 233 102-366 266-517 (534)
6 PLN02153 epithiospecifier prot 100.0 1.1E-30 2.4E-35 245.4 29.2 236 108-366 5-290 (341)
7 PHA02790 Kelch-like protein; P 100.0 3.7E-31 8.1E-36 258.3 26.9 202 142-366 267-476 (480)
8 PLN02193 nitrile-specifier pro 100.0 5.4E-30 1.2E-34 249.4 32.2 242 102-366 139-416 (470)
9 PHA02713 hypothetical protein; 100.0 3.5E-31 7.5E-36 262.1 23.2 215 84-324 305-543 (557)
10 TIGR03548 mutarot_permut cycli 100.0 7E-30 1.5E-34 238.2 28.2 220 101-346 40-312 (323)
11 PLN02193 nitrile-specifier pro 100.0 2.1E-29 4.6E-34 245.3 31.3 252 84-356 177-468 (470)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 2E-29 4.3E-34 237.5 27.9 237 84-347 19-331 (346)
13 KOG4693 Uncharacterized conser 100.0 9.2E-30 2E-34 215.7 20.2 255 84-346 25-311 (392)
14 PRK14131 N-acetylneuraminic ac 100.0 2.3E-28 4.9E-33 232.2 30.1 248 84-358 40-370 (376)
15 PHA02790 Kelch-like protein; P 100.0 5.1E-29 1.1E-33 243.3 25.2 200 84-321 273-477 (480)
16 PHA03098 kelch-like protein; P 100.0 1.4E-28 3E-33 245.0 27.7 237 66-330 272-527 (534)
17 TIGR03547 muta_rot_YjhT mutatr 100.0 4E-28 8.7E-33 228.7 28.6 215 140-371 11-311 (346)
18 TIGR03548 mutarot_permut cycli 100.0 5.8E-28 1.3E-32 225.3 27.3 216 137-366 4-285 (323)
19 PRK14131 N-acetylneuraminic ac 100.0 4.4E-26 9.6E-31 216.6 28.0 228 111-370 18-332 (376)
20 KOG4693 Uncharacterized conser 99.9 2.1E-26 4.6E-31 195.3 18.3 222 136-367 13-283 (392)
21 KOG0379 Kelch repeat-containin 99.9 1.6E-20 3.5E-25 182.7 24.0 221 136-366 60-307 (482)
22 KOG0379 Kelch repeat-containin 99.9 8.6E-20 1.9E-24 177.6 25.2 223 84-325 72-312 (482)
23 KOG4152 Host cell transcriptio 99.8 1.1E-18 2.3E-23 160.6 19.6 273 69-358 18-365 (830)
24 KOG1230 Protein containing rep 99.8 1.3E-17 2.9E-22 150.0 18.3 212 146-366 78-346 (521)
25 KOG1230 Protein containing rep 99.8 2.7E-17 5.8E-22 148.0 16.2 205 101-322 99-348 (521)
26 KOG4152 Host cell transcriptio 99.7 8.6E-17 1.9E-21 148.2 16.2 216 110-345 17-272 (830)
27 COG3055 Uncharacterized protei 99.5 6.5E-13 1.4E-17 118.4 17.9 235 84-346 48-358 (381)
28 COG3055 Uncharacterized protei 99.5 2E-12 4.3E-17 115.4 18.5 191 142-345 42-293 (381)
29 TIGR01640 F_box_assoc_1 F-box 99.2 1.2E-08 2.6E-13 90.5 23.2 185 164-357 14-229 (230)
30 PF13964 Kelch_6: Kelch motif 99.2 9.2E-11 2E-15 77.2 6.4 49 137-186 2-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.0 8.7E-10 1.9E-14 72.5 6.3 50 185-240 1-50 (50)
32 PF01344 Kelch_1: Kelch motif; 98.8 5E-09 1.1E-13 67.9 4.5 47 185-237 1-47 (47)
33 PF01344 Kelch_1: Kelch motif; 98.8 4.1E-09 8.9E-14 68.3 3.3 46 137-183 2-47 (47)
34 PF13415 Kelch_3: Galactose ox 98.8 1.5E-08 3.2E-13 66.2 5.8 48 146-193 1-48 (49)
35 KOG0281 Beta-TrCP (transducin 98.8 1.8E-07 3.8E-12 83.4 13.5 278 43-358 75-390 (499)
36 PLN03215 ascorbic acid mannose 98.8 2.8E-05 6E-10 72.4 28.1 139 230-378 192-367 (373)
37 PF07646 Kelch_2: Kelch motif; 98.7 3.6E-08 7.9E-13 64.3 6.2 47 137-183 2-49 (49)
38 TIGR01640 F_box_assoc_1 F-box 98.7 3E-06 6.5E-11 75.1 19.2 201 100-316 14-230 (230)
39 PF07646 Kelch_2: Kelch motif; 98.7 8E-08 1.7E-12 62.7 6.2 49 185-237 1-49 (49)
40 smart00612 Kelch Kelch domain. 98.6 6.2E-08 1.3E-12 62.5 4.5 47 148-196 1-47 (47)
41 PF12937 F-box-like: F-box-lik 98.6 1.3E-08 2.7E-13 65.9 1.0 38 43-80 1-41 (47)
42 KOG2437 Muskelin [Signal trans 98.6 7.5E-08 1.6E-12 89.8 6.2 173 170-349 235-459 (723)
43 PF13418 Kelch_4: Galactose ox 98.5 8E-08 1.7E-12 62.7 3.8 47 137-184 2-49 (49)
44 PF13418 Kelch_4: Galactose ox 98.4 2.4E-07 5.1E-12 60.5 3.9 47 185-237 1-48 (49)
45 KOG2437 Muskelin [Signal trans 98.4 3.3E-07 7.1E-12 85.6 5.7 159 107-279 236-420 (723)
46 smart00612 Kelch Kelch domain. 98.3 1.2E-06 2.6E-11 56.4 5.1 47 197-253 1-47 (47)
47 smart00256 FBOX A Receptor for 98.3 4E-07 8.8E-12 56.8 2.8 35 46-80 1-38 (41)
48 PF13415 Kelch_3: Galactose ox 98.3 2.1E-06 4.6E-11 55.9 5.9 48 195-250 1-48 (49)
49 PF07893 DUF1668: Protein of u 98.2 0.0024 5.2E-08 59.9 27.2 167 140-315 69-253 (342)
50 PRK11138 outer membrane biogen 98.2 0.0024 5.1E-08 61.4 26.6 219 101-369 131-364 (394)
51 PF00646 F-box: F-box domain; 98.1 6.2E-07 1.3E-11 58.2 0.4 37 43-79 3-42 (48)
52 PRK11138 outer membrane biogen 98.1 0.0033 7.1E-08 60.4 24.7 206 101-354 171-392 (394)
53 PLN02772 guanylate kinase 98.0 5E-05 1.1E-09 71.0 10.4 83 184-272 23-109 (398)
54 PLN02772 guanylate kinase 97.9 6.6E-05 1.4E-09 70.3 10.3 69 137-206 25-97 (398)
55 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.0002 4.4E-09 63.0 12.8 148 165-326 47-210 (243)
56 KOG0274 Cdc4 and related F-box 97.9 0.0042 9.1E-08 61.6 22.0 282 38-358 103-402 (537)
57 PF13854 Kelch_5: Kelch motif 97.9 4.3E-05 9.3E-10 47.8 5.3 41 182-223 1-41 (42)
58 TIGR03300 assembly_YfgL outer 97.9 0.01 2.3E-07 56.5 24.2 161 165-352 201-375 (377)
59 PF13360 PQQ_2: PQQ-like domai 97.9 0.017 3.8E-07 50.9 25.0 185 142-358 32-232 (238)
60 TIGR03300 assembly_YfgL outer 97.7 0.017 3.7E-07 55.1 22.5 194 141-367 60-268 (377)
61 PF13360 PQQ_2: PQQ-like domai 97.6 0.025 5.4E-07 49.9 21.6 179 165-367 4-200 (238)
62 PF13854 Kelch_5: Kelch motif 97.6 0.00015 3.3E-09 45.3 4.9 38 137-174 5-42 (42)
63 PF08450 SGL: SMP-30/Gluconola 97.5 0.0061 1.3E-07 54.4 16.4 187 146-357 11-214 (246)
64 PF07250 Glyoxal_oxid_N: Glyox 97.5 0.0014 3.1E-08 57.7 11.5 135 215-358 47-199 (243)
65 PF08450 SGL: SMP-30/Gluconola 97.4 0.015 3.3E-07 51.8 17.1 179 145-344 50-244 (246)
66 PF07893 DUF1668: Protein of u 97.3 0.019 4.1E-07 53.9 17.2 119 194-329 75-224 (342)
67 TIGR03866 PQQ_ABC_repeats PQQ- 97.1 0.12 2.6E-06 46.8 20.2 172 164-358 11-189 (300)
68 PLN02919 haloacid dehalogenase 97.0 0.23 5E-06 53.8 24.0 196 140-358 627-890 (1057)
69 PF05096 Glu_cyclase_2: Glutam 97.0 0.08 1.7E-06 47.1 17.1 144 194-358 54-205 (264)
70 cd00216 PQQ_DH Dehydrogenases 96.9 0.41 8.9E-06 47.4 23.2 205 141-366 56-327 (488)
71 KOG2120 SCF ubiquitin ligase, 96.9 0.00084 1.8E-08 59.8 3.2 39 42-80 97-138 (419)
72 KOG2055 WD40 repeat protein [G 96.8 0.052 1.1E-06 51.0 14.7 188 148-358 226-419 (514)
73 cd00200 WD40 WD40 domain, foun 96.8 0.3 6.5E-06 43.0 19.6 100 253-357 105-208 (289)
74 COG4257 Vgb Streptogramin lyas 96.8 0.33 7.1E-06 43.1 18.3 171 168-354 172-345 (353)
75 KOG0296 Angio-associated migra 96.8 0.081 1.7E-06 48.4 15.0 144 195-358 75-222 (399)
76 KOG0310 Conserved WD40 repeat- 96.8 0.063 1.4E-06 50.8 14.7 176 165-358 49-227 (487)
77 TIGR03866 PQQ_ABC_repeats PQQ- 96.7 0.44 9.6E-06 43.1 23.9 182 148-357 44-238 (300)
78 cd00200 WD40 WD40 domain, foun 96.6 0.43 9.2E-06 42.0 19.7 171 164-357 73-250 (289)
79 PRK11028 6-phosphogluconolacto 96.6 0.59 1.3E-05 43.5 21.5 179 164-357 12-206 (330)
80 PF10282 Lactonase: Lactonase, 96.6 0.37 8E-06 45.4 19.5 230 98-356 13-275 (345)
81 PRK11028 6-phosphogluconolacto 96.6 0.64 1.4E-05 43.3 24.0 181 164-357 57-259 (330)
82 PLN02919 haloacid dehalogenase 96.6 0.91 2E-05 49.3 23.9 195 145-358 578-835 (1057)
83 COG4257 Vgb Streptogramin lyas 96.5 0.53 1.2E-05 41.8 18.6 218 103-366 86-311 (353)
84 PF08268 FBA_3: F-box associat 96.5 0.063 1.4E-06 42.7 11.4 74 249-322 2-88 (129)
85 KOG0281 Beta-TrCP (transducin 96.5 0.064 1.4E-06 48.7 12.3 110 246-361 323-433 (499)
86 PF05096 Glu_cyclase_2: Glutam 96.4 0.068 1.5E-06 47.5 11.7 103 251-357 54-158 (264)
87 PF12768 Rax2: Cortical protei 96.3 0.43 9.3E-06 43.3 17.1 114 198-323 1-130 (281)
88 TIGR02658 TTQ_MADH_Hv methylam 96.3 1 2.2E-05 42.4 20.4 63 294-358 258-332 (352)
89 KOG2055 WD40 repeat protein [G 96.1 0.21 4.5E-06 47.1 14.0 114 252-366 268-384 (514)
90 KOG0310 Conserved WD40 repeat- 96.1 0.13 2.7E-06 48.8 12.5 121 251-377 78-202 (487)
91 PF10282 Lactonase: Lactonase, 96.1 1 2.2E-05 42.4 19.1 149 196-356 156-322 (345)
92 PF03178 CPSF_A: CPSF A subuni 96.1 0.54 1.2E-05 43.7 17.1 133 214-356 62-202 (321)
93 PTZ00421 coronin; Provisional 96.0 1.8 4E-05 42.8 21.4 145 196-358 138-292 (493)
94 PLN00181 protein SPA1-RELATED; 96.0 1.2 2.5E-05 47.2 20.8 171 164-356 555-738 (793)
95 KOG0316 Conserved WD40 repeat- 95.7 1.2 2.7E-05 38.6 17.6 211 145-385 69-284 (307)
96 PF12768 Rax2: Cortical protei 95.2 0.44 9.5E-06 43.3 12.2 107 162-280 14-130 (281)
97 KOG2997 F-box protein FBX9 [Ge 95.1 0.005 1.1E-07 55.2 -0.3 44 42-85 106-157 (366)
98 PF03089 RAG2: Recombination a 95.1 0.9 2E-05 40.5 13.3 79 179-262 81-174 (337)
99 PRK00178 tolB translocation pr 95.0 3.6 7.9E-05 39.9 25.0 176 164-356 223-406 (430)
100 PF08268 FBA_3: F-box associat 95.0 0.22 4.8E-06 39.5 9.0 71 293-366 3-86 (129)
101 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 4.3 9.3E-05 40.7 23.5 196 142-358 65-335 (527)
102 PTZ00420 coronin; Provisional 95.0 4.7 0.0001 40.6 20.8 142 197-358 139-295 (568)
103 KOG0279 G protein beta subunit 94.8 1.4 3E-05 39.3 13.7 175 165-358 39-224 (315)
104 cd00216 PQQ_DH Dehydrogenases 94.8 4.7 0.0001 39.9 25.4 166 195-372 228-438 (488)
105 KOG0266 WD40 repeat-containing 94.7 4.4 9.4E-05 39.8 19.0 176 164-358 225-411 (456)
106 PRK04792 tolB translocation pr 94.7 4.6 0.0001 39.5 28.0 176 164-356 242-425 (448)
107 PLN00181 protein SPA1-RELATED; 94.7 5.4 0.00012 42.2 20.8 101 252-357 587-691 (793)
108 KOG0286 G-protein beta subunit 94.6 3.3 7.1E-05 37.2 16.9 159 181-358 94-261 (343)
109 KOG0274 Cdc4 and related F-box 94.6 5.6 0.00012 39.8 19.4 170 164-359 311-485 (537)
110 PF14870 PSII_BNR: Photosynthe 94.3 4.3 9.3E-05 37.3 17.4 175 172-366 4-180 (302)
111 PRK13684 Ycf48-like protein; P 94.3 4.8 0.0001 37.7 20.8 170 166-356 154-331 (334)
112 TIGR03032 conserved hypothetic 94.1 2.5 5.3E-05 38.7 14.1 89 290-382 207-315 (335)
113 COG2706 3-carboxymuconate cycl 94.0 5 0.00011 37.0 25.6 144 213-362 166-326 (346)
114 PRK05137 tolB translocation pr 94.0 6.5 0.00014 38.3 26.5 178 164-358 226-414 (435)
115 KOG0315 G-protein beta subunit 94.0 4.1 8.9E-05 35.8 16.7 132 215-358 62-199 (311)
116 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.7 1.9 4.1E-05 43.1 14.2 119 190-320 64-197 (527)
117 PF06433 Me-amine-dh_H: Methyl 93.3 2.4 5.3E-05 39.2 12.9 218 62-318 90-324 (342)
118 KOG0649 WD40 repeat protein [G 93.3 4.6 9.9E-05 35.4 13.6 124 230-358 101-237 (325)
119 PRK04792 tolB translocation pr 93.1 9.4 0.0002 37.4 20.7 135 214-358 242-384 (448)
120 TIGR02800 propeller_TolB tol-p 93.1 8.7 0.00019 36.9 28.0 144 164-323 214-363 (417)
121 COG1520 FOG: WD40-like repeat 93.0 8.3 0.00018 36.6 23.0 199 143-369 65-279 (370)
122 KOG0315 G-protein beta subunit 92.8 6.4 0.00014 34.7 16.5 176 164-356 61-245 (311)
123 KOG4378 Nuclear protein COP1 [ 92.7 3.2 7E-05 39.9 13.0 92 215-315 188-281 (673)
124 PF02191 OLF: Olfactomedin-lik 92.6 7.4 0.00016 34.8 15.8 158 139-314 71-247 (250)
125 PF02191 OLF: Olfactomedin-lik 92.5 7.4 0.00016 34.8 16.3 190 146-356 30-247 (250)
126 KOG0291 WD40-repeat-containing 92.5 5.5 0.00012 40.4 14.8 107 248-358 357-468 (893)
127 KOG1036 Mitotic spindle checkp 92.3 8.2 0.00018 34.9 14.3 124 250-381 62-187 (323)
128 KOG0278 Serine/threonine kinas 92.2 6.5 0.00014 34.6 13.2 140 213-366 164-307 (334)
129 PF07734 FBA_1: F-box associat 91.4 5 0.00011 33.1 11.7 76 248-323 1-92 (164)
130 PRK05137 tolB translocation pr 91.2 15 0.00034 35.6 20.6 180 163-357 181-367 (435)
131 PLN00033 photosystem II stabil 91.0 15 0.00033 35.2 20.9 116 230-352 272-395 (398)
132 KOG0286 G-protein beta subunit 90.8 12 0.00026 33.8 22.8 189 145-358 107-305 (343)
133 PF03089 RAG2: Recombination a 90.7 4.8 0.0001 36.1 11.1 69 233-304 81-173 (337)
134 smart00284 OLF Olfactomedin-li 90.5 12 0.00027 33.3 15.3 158 139-314 76-252 (255)
135 KOG4378 Nuclear protein COP1 [ 90.5 13 0.00028 36.0 14.4 94 261-358 185-282 (673)
136 PRK04043 tolB translocation pr 90.5 18 0.00038 35.1 21.6 175 164-357 213-401 (419)
137 PRK00178 tolB translocation pr 90.5 18 0.00038 35.1 22.0 136 214-358 223-365 (430)
138 PF06433 Me-amine-dh_H: Methyl 90.5 9.5 0.00021 35.5 13.3 64 294-358 248-322 (342)
139 PRK04922 tolB translocation pr 90.3 19 0.0004 35.1 27.7 177 164-357 228-412 (433)
140 KOG4649 PQQ (pyrrolo-quinoline 90.2 6.3 0.00014 35.0 11.3 111 246-365 14-130 (354)
141 KOG0296 Angio-associated migra 90.2 16 0.00034 34.0 19.5 147 146-317 75-223 (399)
142 PRK02889 tolB translocation pr 89.7 21 0.00045 34.7 26.2 176 164-356 220-403 (427)
143 smart00284 OLF Olfactomedin-li 89.6 15 0.00032 32.9 19.1 188 146-356 34-252 (255)
144 KOG0289 mRNA splicing factor [ 89.4 16 0.00034 34.9 13.8 132 188-338 350-486 (506)
145 KOG0647 mRNA export protein (c 89.3 17 0.00036 33.0 13.7 122 252-381 83-208 (347)
146 KOG0291 WD40-repeat-containing 89.1 29 0.00063 35.5 19.6 98 215-325 415-518 (893)
147 TIGR03074 PQQ_membr_DH membran 89.0 33 0.00072 36.1 23.2 162 189-366 310-485 (764)
148 TIGR03074 PQQ_membr_DH membran 88.9 20 0.00044 37.6 16.0 120 189-320 188-352 (764)
149 TIGR02658 TTQ_MADH_Hv methylam 88.7 22 0.00047 33.6 22.9 102 100-225 27-139 (352)
150 KOG0293 WD40 repeat-containing 88.7 22 0.00048 33.7 16.0 172 166-358 293-472 (519)
151 PTZ00421 coronin; Provisional 88.3 7.3 0.00016 38.6 11.9 105 252-358 87-200 (493)
152 KOG0645 WD40 repeat protein [G 88.1 19 0.00041 32.2 14.5 128 253-384 27-163 (312)
153 KOG2048 WD40 repeat protein [G 88.1 31 0.00067 34.8 15.5 135 214-358 47-186 (691)
154 PRK03629 tolB translocation pr 87.9 27 0.0006 33.9 26.5 176 164-356 223-406 (429)
155 KOG0299 U3 snoRNP-associated p 87.9 26 0.00057 33.6 15.6 183 142-358 209-412 (479)
156 PF14870 PSII_BNR: Photosynthe 87.8 22 0.00048 32.7 22.1 176 145-347 113-296 (302)
157 KOG0266 WD40 repeat-containing 87.6 30 0.00065 34.0 20.0 137 215-358 226-366 (456)
158 PF03178 CPSF_A: CPSF A subuni 87.5 14 0.00031 34.1 12.9 131 164-311 62-199 (321)
159 TIGR02800 propeller_TolB tol-p 87.4 28 0.00061 33.4 22.4 136 164-315 258-398 (417)
160 PRK04922 tolB translocation pr 86.7 32 0.0007 33.4 22.5 136 214-358 228-370 (433)
161 PRK04043 tolB translocation pr 86.6 32 0.0007 33.3 19.3 135 164-316 257-402 (419)
162 KOG0278 Serine/threonine kinas 86.5 22 0.00049 31.4 12.2 60 252-314 235-297 (334)
163 KOG0294 WD40 repeat-containing 86.5 19 0.00041 32.9 12.0 98 246-347 46-148 (362)
164 KOG0285 Pleiotropic regulator 86.3 8.6 0.00019 35.6 10.0 104 252-358 162-267 (460)
165 KOG0306 WD40-repeat-containing 86.0 44 0.00095 34.3 16.9 165 163-355 42-218 (888)
166 COG1520 FOG: WD40-like repeat 86.0 32 0.00068 32.6 18.0 154 192-365 65-224 (370)
167 PLN00033 photosystem II stabil 85.8 34 0.00074 32.9 21.7 109 251-366 248-362 (398)
168 KOG0316 Conserved WD40 repeat- 85.7 24 0.00052 31.0 14.9 121 249-378 67-192 (307)
169 KOG0265 U5 snRNP-specific prot 85.1 20 0.00043 32.5 11.4 64 253-316 102-165 (338)
170 COG4946 Uncharacterized protei 85.0 39 0.00084 32.8 24.5 21 263-283 287-307 (668)
171 KOG0299 U3 snoRNP-associated p 85.0 14 0.00031 35.2 11.1 149 189-358 207-358 (479)
172 KOG0318 WD40 repeat stress pro 84.9 17 0.00038 35.4 11.7 108 248-357 450-561 (603)
173 PRK02889 tolB translocation pr 84.7 40 0.00087 32.7 20.3 179 164-358 176-362 (427)
174 KOG1898 Splicing factor 3b, su 84.2 64 0.0014 34.6 16.4 180 165-353 854-1045(1205)
175 TIGR03118 PEPCTERM_chp_1 conse 83.5 31 0.00067 31.6 12.1 104 252-358 151-281 (336)
176 KOG1332 Vesicle coat complex C 82.7 34 0.00073 30.3 14.8 108 254-366 176-293 (299)
177 KOG3881 Uncharacterized conser 82.3 35 0.00076 32.1 12.2 112 197-317 162-280 (412)
178 KOG0271 Notchless-like WD40 re 81.8 47 0.001 31.3 13.5 131 215-357 138-277 (480)
179 COG3391 Uncharacterized conser 81.6 50 0.0011 31.5 16.1 146 194-358 84-241 (381)
180 KOG0279 G protein beta subunit 81.4 41 0.00088 30.3 17.4 102 254-358 162-264 (315)
181 KOG0289 mRNA splicing factor [ 81.1 24 0.00051 33.7 10.8 113 246-366 351-468 (506)
182 KOG0293 WD40 repeat-containing 80.8 50 0.0011 31.4 12.7 182 145-356 322-513 (519)
183 KOG0305 Anaphase promoting com 79.9 65 0.0014 31.7 15.8 168 165-358 198-378 (484)
184 KOG1036 Mitotic spindle checkp 78.6 53 0.0011 29.9 16.2 130 165-316 36-165 (323)
185 KOG2321 WD40 repeat protein [G 78.3 76 0.0016 31.6 14.7 105 148-274 147-261 (703)
186 COG4946 Uncharacterized protei 78.3 69 0.0015 31.2 16.2 178 162-358 105-297 (668)
187 KOG0318 WD40 repeat stress pro 77.5 76 0.0017 31.2 19.7 77 289-365 447-527 (603)
188 cd00094 HX Hemopexin-like repe 77.3 44 0.00096 28.4 17.0 60 252-317 110-178 (194)
189 KOG0641 WD40 repeat protein [G 77.3 48 0.001 28.8 19.0 72 287-358 183-263 (350)
190 KOG0639 Transducin-like enhanc 77.0 21 0.00044 34.8 9.2 107 195-316 476-583 (705)
191 KOG0321 WD40 repeat-containing 77.0 12 0.00025 37.4 7.8 103 254-358 66-177 (720)
192 PF07433 DUF1513: Protein of u 77.0 61 0.0013 29.8 19.3 227 98-356 26-285 (305)
193 KOG0640 mRNA cleavage stimulat 76.3 27 0.00058 31.9 9.3 65 252-317 227-294 (430)
194 PF13570 PQQ_3: PQQ-like domai 76.1 7.9 0.00017 23.3 4.4 25 290-315 16-40 (40)
195 KOG2048 WD40 repeat protein [G 75.9 45 0.00097 33.7 11.5 112 252-366 440-557 (691)
196 KOG0308 Conserved WD40 repeat- 75.6 87 0.0019 31.7 13.3 110 195-316 129-245 (735)
197 PLN03215 ascorbic acid mannose 75.5 76 0.0016 30.2 14.6 35 42-76 3-41 (373)
198 PF09910 DUF2139: Uncharacteri 74.9 67 0.0015 29.3 20.0 138 162-316 76-232 (339)
199 KOG0294 WD40 repeat-containing 74.7 70 0.0015 29.4 14.7 51 307-357 172-238 (362)
200 KOG1897 Damage-specific DNA bi 74.7 1.3E+02 0.0027 32.3 17.7 153 196-357 787-943 (1096)
201 KOG4649 PQQ (pyrrolo-quinoline 74.7 64 0.0014 28.9 17.6 177 164-366 33-223 (354)
202 PF02897 Peptidase_S9_N: Proly 74.6 83 0.0018 30.2 16.4 136 213-358 251-406 (414)
203 PTZ00420 coronin; Provisional 73.3 48 0.001 33.6 11.4 60 297-358 139-199 (568)
204 KOG0263 Transcription initiati 73.0 31 0.00068 35.2 9.8 103 250-358 543-651 (707)
205 PF03088 Str_synth: Strictosid 71.4 11 0.00024 27.7 4.9 51 263-314 37-87 (89)
206 PRK01742 tolB translocation pr 71.0 1E+02 0.0023 29.8 25.6 168 164-353 228-398 (429)
207 KOG0306 WD40-repeat-containing 70.8 29 0.00062 35.6 9.0 80 290-371 378-466 (888)
208 PRK03629 tolB translocation pr 70.5 1.1E+02 0.0023 29.8 22.5 135 214-358 223-365 (429)
209 PF13859 BNR_3: BNR repeat-lik 70.1 67 0.0015 29.7 10.9 184 141-326 3-218 (310)
210 KOG0646 WD40 repeat protein [G 69.6 1.1E+02 0.0024 29.5 16.2 103 252-358 188-309 (476)
211 PRK13684 Ycf48-like protein; P 68.9 1E+02 0.0022 28.8 20.5 158 172-352 33-197 (334)
212 KOG0639 Transducin-like enhanc 68.7 21 0.00046 34.7 7.2 105 252-358 476-583 (705)
213 KOG4341 F-box protein containi 68.5 6.1 0.00013 37.6 3.7 48 41-88 70-120 (483)
214 KOG1539 WD repeat protein [Gen 68.0 82 0.0018 32.8 11.5 135 215-358 471-608 (910)
215 COG3823 Glutamine cyclotransfe 67.1 63 0.0014 28.0 9.0 68 246-315 49-120 (262)
216 COG3823 Glutamine cyclotransfe 66.3 88 0.0019 27.1 13.1 106 192-315 52-159 (262)
217 KOG0772 Uncharacterized conser 66.1 1.4E+02 0.0031 29.4 15.1 109 248-361 371-493 (641)
218 PF07734 FBA_1: F-box associat 65.4 75 0.0016 26.0 11.4 81 192-279 2-91 (164)
219 KOG0263 Transcription initiati 63.6 77 0.0017 32.5 10.4 62 252-315 588-650 (707)
220 KOG0282 mRNA splicing factor [ 62.9 78 0.0017 30.7 9.8 98 252-354 269-370 (503)
221 COG0823 TolB Periplasmic compo 62.1 1.5E+02 0.0033 28.8 12.1 134 215-358 219-360 (425)
222 PF03088 Str_synth: Strictosid 61.6 33 0.00071 25.2 5.7 19 305-323 36-54 (89)
223 KOG2321 WD40 repeat protein [G 61.5 61 0.0013 32.3 8.9 103 254-358 147-260 (703)
224 KOG0264 Nucleosome remodeling 60.6 78 0.0017 30.3 9.3 109 255-366 242-357 (422)
225 PF07433 DUF1513: Protein of u 60.3 1.4E+02 0.0031 27.5 19.3 85 140-239 8-97 (305)
226 PF02897 Peptidase_S9_N: Proly 60.0 1.6E+02 0.0035 28.1 19.2 200 145-356 133-357 (414)
227 KOG4499 Ca2+-binding protein R 59.9 1E+02 0.0022 27.3 9.1 50 295-344 222-273 (310)
228 KOG1240 Protein kinase contain 59.9 2.6E+02 0.0057 30.9 13.7 82 298-379 1165-1248(1431)
229 KOG0282 mRNA splicing factor [ 58.7 47 0.001 32.1 7.6 60 296-358 270-332 (503)
230 KOG1517 Guanine nucleotide bin 58.3 2.8E+02 0.0061 30.3 14.8 127 252-381 1177-1316(1387)
231 KOG3881 Uncharacterized conser 57.3 1.8E+02 0.0038 27.6 11.6 95 214-316 226-322 (412)
232 PF02239 Cytochrom_D1: Cytochr 56.8 56 0.0012 31.1 8.1 97 253-356 6-108 (369)
233 KOG0646 WD40 repeat protein [G 56.3 30 0.00064 33.3 5.8 66 290-356 86-153 (476)
234 PF12217 End_beta_propel: Cata 55.7 1.6E+02 0.0034 26.5 13.6 152 187-345 76-257 (367)
235 PF02239 Cytochrom_D1: Cytochr 55.5 1.9E+02 0.0041 27.5 12.2 131 214-357 16-159 (369)
236 KOG0313 Microtubule binding pr 55.3 1.4E+02 0.0031 28.2 9.8 101 253-356 312-418 (423)
237 PF09910 DUF2139: Uncharacteri 54.9 1.7E+02 0.0037 26.8 17.6 163 187-358 38-232 (339)
238 PF15525 DUF4652: Domain of un 54.8 1.3E+02 0.0029 25.4 11.5 89 263-356 88-185 (200)
239 KOG0647 mRNA export protein (c 54.7 1.7E+02 0.0038 26.8 13.3 138 145-311 82-225 (347)
240 KOG0285 Pleiotropic regulator 54.1 1.9E+02 0.0042 27.2 15.4 130 215-358 174-309 (460)
241 COG3391 Uncharacterized conser 53.2 2.1E+02 0.0045 27.3 20.4 191 145-357 84-284 (381)
242 KOG2502 Tub family proteins [G 52.7 18 0.00038 33.5 3.7 37 41-77 43-90 (355)
243 COG3386 Gluconolactonase [Carb 51.9 2E+02 0.0043 26.6 17.5 106 248-356 117-243 (307)
244 COG3386 Gluconolactonase [Carb 51.0 2E+02 0.0044 26.5 22.6 166 166-346 87-276 (307)
245 PF03022 MRJP: Major royal jel 50.4 2E+02 0.0043 26.2 13.4 81 263-343 34-126 (287)
246 KOG0283 WD40 repeat-containing 49.7 3.2E+02 0.0069 28.4 15.6 104 252-356 462-576 (712)
247 KOG1517 Guanine nucleotide bin 49.5 98 0.0021 33.4 8.7 100 255-358 1125-1241(1387)
248 PF13013 F-box-like_2: F-box-l 49.4 29 0.00062 26.6 3.8 17 43-59 22-38 (109)
249 KOG1446 Histone H3 (Lys4) meth 49.3 2.1E+02 0.0046 26.2 14.6 149 195-361 25-175 (311)
250 KOG0308 Conserved WD40 repeat- 46.7 3.4E+02 0.0073 27.8 12.0 120 252-373 129-268 (735)
251 KOG0640 mRNA cleavage stimulat 46.6 1.9E+02 0.0041 26.7 9.0 146 213-365 237-392 (430)
252 KOG0303 Actin-binding protein 46.2 2.7E+02 0.0059 26.6 13.5 135 213-358 153-296 (472)
253 KOG3545 Olfactomedin and relat 45.7 2.2E+02 0.0047 25.3 12.6 158 139-314 70-246 (249)
254 KOG0305 Anaphase promoting com 41.3 91 0.002 30.8 6.8 62 295-358 228-290 (484)
255 KOG0645 WD40 repeat protein [G 41.3 2.7E+02 0.0059 25.2 18.1 147 196-356 27-180 (312)
256 KOG1273 WD40 repeat protein [G 40.7 77 0.0017 29.2 5.7 61 295-358 34-97 (405)
257 KOG2106 Uncharacterized conser 39.1 4E+02 0.0086 26.4 12.1 98 254-354 214-314 (626)
258 KOG1539 WD repeat protein [Gen 39.0 4.9E+02 0.011 27.5 12.4 71 246-320 39-109 (910)
259 KOG3926 F-box proteins [Amino 38.1 44 0.00096 29.9 3.8 19 41-59 200-218 (332)
260 KOG1520 Predicted alkaloid syn 37.7 3.7E+02 0.0079 25.6 10.2 70 252-322 126-215 (376)
261 PF11768 DUF3312: Protein of u 37.3 3.7E+02 0.0081 26.9 10.2 60 252-316 270-331 (545)
262 KOG0302 Ribosome Assembly prot 37.2 99 0.0021 29.2 5.9 61 298-358 316-380 (440)
263 KOG1445 Tumor-specific antigen 37.1 1.7E+02 0.0037 29.7 7.8 93 263-357 742-845 (1012)
264 PRK02888 nitrous-oxide reducta 37.0 4.8E+02 0.01 26.8 13.1 54 305-358 295-353 (635)
265 PF08662 eIF2A: Eukaryotic tra 36.3 1.2E+02 0.0027 25.6 6.3 61 295-358 71-135 (194)
266 PF14783 BBS2_Mid: Ciliary BBS 36.2 2E+02 0.0043 22.1 8.7 62 257-323 19-80 (111)
267 KOG1523 Actin-related protein 36.1 3.6E+02 0.0078 25.0 10.2 143 215-369 33-194 (361)
268 KOG0276 Vesicle coat complex C 35.7 1.5E+02 0.0033 30.0 7.3 65 252-318 195-261 (794)
269 COG4447 Uncharacterized protei 35.3 3.5E+02 0.0076 24.7 14.2 100 255-357 228-333 (339)
270 KOG0292 Vesicle coat complex C 35.1 4.5E+02 0.0097 28.2 10.6 59 255-316 220-282 (1202)
271 KOG2106 Uncharacterized conser 34.9 4.7E+02 0.01 26.0 20.0 41 164-206 267-308 (626)
272 TIGR02276 beta_rpt_yvtn 40-res 34.5 99 0.0021 18.1 4.4 24 295-318 3-26 (42)
273 KOG0272 U4/U6 small nuclear ri 34.3 4.3E+02 0.0094 25.4 10.3 105 248-356 310-418 (459)
274 KOG4283 Transcription-coupled 34.1 3.4E+02 0.0074 24.9 8.6 91 215-314 125-219 (397)
275 KOG1523 Actin-related protein 33.7 3.9E+02 0.0085 24.8 10.1 99 252-353 21-127 (361)
276 KOG1897 Damage-specific DNA bi 33.3 6.6E+02 0.014 27.3 14.2 146 147-309 787-937 (1096)
277 cd00094 HX Hemopexin-like repe 33.2 3E+02 0.0064 23.2 17.2 100 253-358 63-177 (194)
278 PRK10115 protease 2; Provision 32.9 5.9E+02 0.013 26.6 25.3 183 162-358 197-396 (686)
279 COG3490 Uncharacterized protei 32.6 4E+02 0.0086 24.5 14.6 173 138-324 116-320 (366)
280 KOG0300 WD40 repeat-containing 32.6 4.1E+02 0.0088 24.6 13.0 59 299-358 371-430 (481)
281 KOG1274 WD40 repeat protein [G 32.5 6.5E+02 0.014 26.9 12.9 127 252-383 24-150 (933)
282 KOG1445 Tumor-specific antigen 32.5 1.9E+02 0.004 29.5 7.3 54 303-356 739-798 (1012)
283 KOG0268 Sof1-like rRNA process 32.3 3.2E+02 0.007 25.8 8.4 61 296-356 284-345 (433)
284 KOG1407 WD40 repeat protein [F 32.1 3.8E+02 0.0083 24.2 9.0 60 295-356 158-219 (313)
285 PF01011 PQQ: PQQ enzyme repea 32.0 97 0.0021 18.2 3.6 23 297-320 2-26 (38)
286 KOG3545 Olfactomedin and relat 31.9 3.7E+02 0.008 23.9 10.4 63 295-357 30-97 (249)
287 KOG0292 Vesicle coat complex C 31.8 6.8E+02 0.015 27.0 18.6 78 298-376 220-308 (1202)
288 KOG2096 WD40 repeat protein [G 31.7 4.3E+02 0.0093 24.6 9.9 63 293-356 195-258 (420)
289 KOG0643 Translation initiation 31.5 4E+02 0.0086 24.2 12.1 94 215-316 75-179 (327)
290 PF08662 eIF2A: Eukaryotic tra 31.5 3.2E+02 0.0069 23.1 10.3 97 253-356 72-179 (194)
291 KOG0643 Translation initiation 31.4 4E+02 0.0087 24.1 16.8 171 164-345 74-251 (327)
292 KOG0649 WD40 repeat protein [G 30.6 3.9E+02 0.0085 23.8 16.1 160 173-353 98-271 (325)
293 KOG0288 WD40 repeat protein Ti 30.3 5E+02 0.011 25.0 10.6 108 246-358 305-419 (459)
294 PF00400 WD40: WD domain, G-be 30.1 1.1E+02 0.0024 17.4 5.2 18 337-354 22-39 (39)
295 KOG2096 WD40 repeat protein [G 29.8 4.6E+02 0.01 24.4 15.8 71 250-322 195-269 (420)
296 PF11768 DUF3312: Protein of u 29.1 6.1E+02 0.013 25.5 16.0 60 295-358 270-331 (545)
297 PF14517 Tachylectin: Tachylec 29.0 3.2E+02 0.0069 24.1 7.5 66 252-320 44-118 (229)
298 KOG0301 Phospholipase A2-activ 28.6 6.8E+02 0.015 25.9 12.8 61 293-356 228-288 (745)
299 PF08309 LVIVD: LVIVD repeat; 28.2 1.5E+02 0.0032 18.2 4.8 27 331-358 5-31 (42)
300 KOG0280 Uncharacterized conser 28.0 2.1E+02 0.0046 26.1 6.3 71 297-369 179-263 (339)
301 KOG0321 WD40 repeat-containing 27.6 3.2E+02 0.0069 27.8 8.0 67 250-316 108-177 (720)
302 PF14583 Pectate_lyase22: Olig 27.1 5.7E+02 0.012 24.5 12.6 134 214-356 216-383 (386)
303 PRK01742 tolB translocation pr 27.0 5.8E+02 0.013 24.6 20.4 131 214-358 228-363 (429)
304 KOG1332 Vesicle coat complex C 27.0 4.6E+02 0.01 23.5 16.2 54 269-323 241-296 (299)
305 PF01436 NHL: NHL repeat; Int 27.0 1.2E+02 0.0025 16.5 3.7 18 294-311 11-28 (28)
306 KOG0295 WD40 repeat-containing 25.2 5.9E+02 0.013 24.1 15.7 90 252-346 303-395 (406)
307 KOG2919 Guanine nucleotide-bin 25.0 5.7E+02 0.012 23.9 9.2 138 216-356 135-281 (406)
308 KOG4283 Transcription-coupled 24.8 5.5E+02 0.012 23.6 11.7 23 195-225 55-77 (397)
309 KOG1275 PAB-dependent poly(A) 24.5 2E+02 0.0043 30.7 6.2 96 246-346 140-235 (1118)
310 KOG0265 U5 snRNP-specific prot 24.4 5.6E+02 0.012 23.6 9.5 21 297-318 104-124 (338)
311 KOG0771 Prolactin regulatory e 24.2 6.4E+02 0.014 24.1 10.4 103 252-357 197-312 (398)
312 KOG1310 WD40 repeat protein [G 23.6 3.1E+02 0.0067 27.5 7.0 63 295-357 61-126 (758)
313 TIGR03032 conserved hypothetic 23.5 5.4E+02 0.012 24.0 8.2 74 213-303 184-259 (335)
314 PF14783 BBS2_Mid: Ciliary BBS 23.4 3.5E+02 0.0075 20.8 8.0 63 297-367 16-78 (111)
315 KOG0772 Uncharacterized conser 23.3 7.6E+02 0.016 24.7 11.8 63 294-358 327-396 (641)
316 PF03022 MRJP: Major royal jel 22.8 5.8E+02 0.013 23.2 22.4 187 145-345 10-254 (287)
317 KOG0301 Phospholipase A2-activ 22.1 4E+02 0.0086 27.4 7.6 66 293-358 22-91 (745)
318 KOG0269 WD40 repeat-containing 22.1 9.4E+02 0.02 25.3 11.0 103 254-358 147-252 (839)
319 KOG0272 U4/U6 small nuclear ri 21.6 3.7E+02 0.0081 25.9 6.9 64 293-357 312-376 (459)
320 KOG2315 Predicted translation 21.3 7.3E+02 0.016 24.9 9.0 93 98-223 249-345 (566)
321 COG4880 Secreted protein conta 21.3 4.7E+02 0.01 25.4 7.5 67 307-373 407-474 (603)
322 KOG0319 WD40-repeat-containing 20.6 9.8E+02 0.021 25.0 13.4 107 246-358 67-181 (775)
323 PRK10115 protease 2; Provision 20.0 1E+03 0.022 24.9 20.1 147 164-323 247-403 (686)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-37 Score=302.64 Aligned_cols=245 Identities=11% Similarity=0.188 Sum_probs=208.5
Q ss_pred EEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC
Q 044903 101 HLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP 180 (387)
Q Consensus 101 ~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~ 180 (387)
.+.+|||.+++|..++++|.. +.+++++++++.||++||.... ....+.+++|||.+++|.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~---------------r~~~~~a~l~~~IYviGG~~~~-~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNH---------------IINYASAIVDNEIIIAGGYNFN-NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcc---------------ccceEEEEECCEEEEEcCCCCC-CCccceEEEEECCCCeEeeCC
Confidence 468899999999999998862 3357888899999999996421 235678999999999999999
Q ss_pred CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEee
Q 044903 181 ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV 260 (387)
Q Consensus 181 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg 260 (387)
+|+.+|..+++++++++||++||... ....+++++||+.+++ |..+++||.++.. +++++++|+||++||
T Consensus 337 ~m~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~----W~~~~~mp~~r~~---~~~~~~~g~IYviGG 406 (557)
T PHA02713 337 PMIKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDK----WKMLPDMPIALSS---YGMCVLDQYIYIIGG 406 (557)
T ss_pred CCcchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCe----EEECCCCCccccc---ccEEEECCEEEEEeC
Confidence 99999999999999999999999854 2356789999999999 9999999987654 788899999999998
Q ss_pred eC-----------------------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC------CeEEEE
Q 044903 261 KG-----------------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS------CTLSKY 311 (387)
Q Consensus 261 ~~-----------------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~------~~v~~y 311 (387)
.. ..+++|||++++|+.+++ ++.++..+++++.+|+||++||.+ ..+.+|
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred CCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence 63 358999999999999987 666666788889999999999853 247899
Q ss_pred eCCC-CceEEccccccccCceeEEEeCCeEEEEecCCc--eEEEEEecCCCCCceeEEcCCCCceeeE
Q 044903 312 DEVM-DDWKEVVKSDLLKGARHAAAGGGRVCAVCENGG--GIVVVDVKAAAAPTIFVVDTPLGFEALS 376 (387)
Q Consensus 312 d~~~-~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~--~i~v~d~~~~~~~~~W~~~~~~~~~~~~ 376 (387)
||++ ++|+.+.++|..+..++++.++|+||++||.++ .+.+||+.+. +|+...|..-++.-
T Consensus 486 dp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~----~W~~~~~~~~~~~~ 549 (557)
T PHA02713 486 NTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY----EWNHICHQHSNSYI 549 (557)
T ss_pred cCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc----cccchhhhcCCceE
Confidence 9999 899999999998888999999999999998654 6899999987 89986665444433
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=298.43 Aligned_cols=292 Identities=20% Similarity=0.264 Sum_probs=237.3
Q ss_pred CCCChHHHHHHHhhhcC-h---hhHH---HhhHhhhhhccCC------CCCCc----ceEEEeecCCCCCCCCCeEEEEE
Q 044903 43 LPGLPDHIAHLCLSHVH-P---SILH---NVCHSWRRLIYSP------SFPPF----LSLYALFSPKSNSSSTPIHLFTF 105 (387)
Q Consensus 43 ~~~LP~dl~~~iL~rLP-~---~~~r---~Vck~W~~li~s~------~f~~~----~~l~~~~~~~~~~~~~~~~~~~~ 105 (387)
+|-||...+.++....+ + ..++ .-.|.|+.+-... .-... -.|+++++... .......+..|
T Consensus 228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~-~~~~~~~ve~y 306 (571)
T KOG4441|consen 228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNR-QGQSLRSVECY 306 (571)
T ss_pred ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCC-CCcccceeEEe
Confidence 36677777777766665 1 1111 2233555554321 11111 25777776411 12334558899
Q ss_pred eCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCC
Q 044903 106 DPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP 185 (387)
Q Consensus 106 d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~ 185 (387)
||.++.|..+++|+.+ |..+++++++|.||++||.+. .....+.+++|||.+++|..+|+|+.+
T Consensus 307 d~~~~~w~~~a~m~~~---------------r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~ 370 (571)
T KOG4441|consen 307 DPKTNEWSSLAPMPSP---------------RCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTK 370 (571)
T ss_pred cCCcCcEeecCCCCcc---------------cccccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCc
Confidence 9999999999999962 445889999999999999873 255788999999999999999999999
Q ss_pred ceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---
Q 044903 186 RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--- 262 (387)
Q Consensus 186 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~--- 262 (387)
|..++.++++|.||++||.+. ...+.++|.||+.+++ |..+++|+.++. .+++++++|+||++||..
T Consensus 371 R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~----W~~va~m~~~r~---~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 371 RSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNK----WTPVAPMLTRRS---GHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred cccceeEEECCEEEEEecccc---ccccccEEEecCCCCc----ccccCCCCccee---eeEEEEECCEEEEEcCcCCCc
Confidence 999999999999999999975 4678899999999999 999999997654 499999999999999965
Q ss_pred ---CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC-----eEEEEeCCCCceEEccccccccCceeEE
Q 044903 263 ---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-----TLSKYDEVMDDWKEVVKSDLLKGARHAA 334 (387)
Q Consensus 263 ---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~-----~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 334 (387)
..+++|||.+++|+.+++ |...+.+..+++.+++||++||.++ .+.+||+++++|+.+..+...+...+++
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred cccceEEEEcCCCCceeecCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 789999999999999998 6777777889999999999999664 4899999999999999899999999999
Q ss_pred EeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903 335 AGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 335 ~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~ 366 (387)
.++++||++||.+ ..+.+||+.+. .|+.
T Consensus 520 ~~~~~ly~vGG~~~~~~l~~ve~ydp~~d----~W~~ 552 (571)
T KOG4441|consen 520 VLGGKLYAVGGFDGNNNLNTVECYDPETD----TWTE 552 (571)
T ss_pred EECCEEEEEecccCccccceeEEcCCCCC----ceee
Confidence 9999999999853 57899999976 9997
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-31 Score=251.54 Aligned_cols=256 Identities=16% Similarity=0.223 Sum_probs=190.7
Q ss_pred eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.+|++++...........+++||+.+++|..+++++..|.. .+.++++++++++||++||... ....
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~-----------~~~~~~~~~~~~~iyv~GG~~~--~~~~ 100 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI-----------SCLGVRMVAVGTKLYIFGGRDE--KREF 100 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC-----------ccCceEEEEECCEEEEECCCCC--CCcc
Confidence 58888874110011123599999999999998876542211 1346788999999999999754 3456
Q ss_pred CccEEEeCCCCceeeCCCC-----CCCceeeeEEeeCCEEEEEecCCCCC---CCCCCceEEEEeCCCCccccCeEEcCC
Q 044903 164 TRPLIFDPICRTWTFGPEL-----VTPRRWCAAGYSRGAVYVASGIGSQF---SSDVAKSVEKWDLMNGEKNSRWEKTGE 235 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~v~vyd~~t~~~~~~W~~~~~ 235 (387)
+++++||+.+++|+++++| |.+|..+++++.+++|||+||..... .....+++++||+.+++ |..+++
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~l~~ 176 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK----WVQLPD 176 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe----EeeCCC
Confidence 7899999999999999887 78899999999999999999985421 11235689999999999 999998
Q ss_pred CCCCcccccceeEEEECCEEEEEeeeC-------------CeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEE
Q 044903 236 LKDGRFSREAIDAVGWKGKLCLVNVKG-------------AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYG 300 (387)
Q Consensus 236 ~~~~~~~~~~~~~v~~~g~lyv~gg~~-------------~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~ 300 (387)
+..+...|..+.+++++++||++||.. ..+++||+++++|+.++. .++..+..+++++.+++||+
T Consensus 177 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv 256 (341)
T PLN02153 177 PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII 256 (341)
T ss_pred CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE
Confidence 764434456688899999999998742 579999999999999874 24556667788889999999
Q ss_pred EeCCC--------------CeEEEEeCCCCceEEccc-----cccccCcee-EE-EeCCeEEEEecCC------ceEEEE
Q 044903 301 IDENS--------------CTLSKYDEVMDDWKEVVK-----SDLLKGARH-AA-AGGGRVCAVCENG------GGIVVV 353 (387)
Q Consensus 301 ~g~~~--------------~~v~~yd~~~~~W~~v~~-----~~~~~~~~~-~~-~~~~~l~v~gg~~------~~i~v~ 353 (387)
+||.. +++++||+++++|+.+.. +|+.+..++ ++ ..+++|||+||.. .+++.|
T Consensus 257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~ 336 (341)
T PLN02153 257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFY 336 (341)
T ss_pred ECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEE
Confidence 99852 269999999999999863 233332222 33 3345899999863 345555
Q ss_pred Eec
Q 044903 354 DVK 356 (387)
Q Consensus 354 d~~ 356 (387)
++.
T Consensus 337 ~~~ 339 (341)
T PLN02153 337 AVN 339 (341)
T ss_pred ecc
Confidence 543
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=267.82 Aligned_cols=241 Identities=22% Similarity=0.326 Sum_probs=199.3
Q ss_pred hhHhhhhhccCCCCCCc-------ceEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCcccccc
Q 044903 66 VCHSWRRLIYSPSFPPF-------LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNL 138 (387)
Q Consensus 66 Vck~W~~li~s~~f~~~-------~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~ 138 (387)
..+.|..+..-+.=... ..+|+.++... .......++.|||.+++|..+++|... |.
T Consensus 309 ~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~---------------R~ 372 (571)
T KOG4441|consen 309 KTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTK---------------RS 372 (571)
T ss_pred CcCcEeecCCCCcccccccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCc---------------cc
Confidence 34467777665532211 26999988411 112345699999999999999999973 66
Q ss_pred ceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEE
Q 044903 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEK 218 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~v 218 (387)
++++++++|.||++||.++ ....+.+.+|||.+++|..+++|+.+|..+++++++++||++||.+. ....++++++
T Consensus 373 ~~~v~~l~g~iYavGG~dg--~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~--~~~~l~sve~ 448 (571)
T KOG4441|consen 373 DFGVAVLDGKLYAVGGFDG--EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG--SSNCLNSVEC 448 (571)
T ss_pred cceeEEECCEEEEEecccc--ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC--CccccceEEE
Confidence 7999999999999999875 56778999999999999999999999999999999999999999876 2347899999
Q ss_pred EeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCcEEEE
Q 044903 219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAM 293 (387)
Q Consensus 219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~ 293 (387)
|||.+++ |+.+++|+.+|.. +.+++++++||++||+. ..++.|||++++|..+.+ +...+.+..+++
T Consensus 449 YDP~t~~----W~~~~~M~~~R~~---~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 449 YDPETNT----WTLIAPMNTRRSG---FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVV 520 (571)
T ss_pred EcCCCCc----eeecCCccccccc---ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc-CccccccccEEE
Confidence 9999999 9999999988754 88999999999999976 568999999999999966 677777788889
Q ss_pred eCCeEEEEeCCCC-----eEEEEeCCCCceEEccccccccCceeEE
Q 044903 294 DEEVLYGIDENSC-----TLSKYDEVMDDWKEVVKSDLLKGARHAA 334 (387)
Q Consensus 294 ~~g~ly~~g~~~~-----~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 334 (387)
.++++|++||.++ .+..|||++++|+....+...+...+++
T Consensus 521 ~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~ 566 (571)
T KOG4441|consen 521 LGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRGGAGVA 566 (571)
T ss_pred ECCEEEEEecccCccccceeEEcCCCCCceeeCCCccccccCcceE
Confidence 9999999998654 5999999999999998844444443333
No 5
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=266.87 Aligned_cols=233 Identities=18% Similarity=0.249 Sum_probs=196.2
Q ss_pred EEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCC
Q 044903 102 LFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE 181 (387)
Q Consensus 102 ~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~ 181 (387)
...|++..++|..++..+. +..+++++.++.||++||.... ....+++++||+.+++|..+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~ 328 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHY----------------VYCFGSVVLNNVIYFIGGMNKN-NLSVNSVVSYDTKTKSWNKVPE 328 (534)
T ss_pred eeecchhhhhcccccCccc----------------cccceEEEECCEEEEECCCcCC-CCeeccEEEEeCCCCeeeECCC
Confidence 4567888888888765443 2236788899999999997542 2345689999999999999999
Q ss_pred CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeee
Q 044903 182 LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK 261 (387)
Q Consensus 182 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~ 261 (387)
|+.+|..++++.++++|||+||... ....+++++||+.+++ |+.+++||.++. .++++.++|+||++||.
T Consensus 329 ~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~lp~~r~---~~~~~~~~~~iYv~GG~ 398 (534)
T PHA03098 329 LIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESK----WREEPPLIFPRY---NPCVVNVNNLIYVIGGI 398 (534)
T ss_pred CCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCc----eeeCCCcCcCCc---cceEEEECCEEEEECCc
Confidence 9999999999999999999999864 3456789999999999 999999997764 48889999999999995
Q ss_pred C------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--------CeEEEEeCCCCceEEccccccc
Q 044903 262 G------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------CTLSKYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 262 ~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--------~~v~~yd~~~~~W~~v~~~~~~ 327 (387)
. ..+++||+.+++|+.+++ ++.++.++++++.+++||++||.. ..+++||+++++|+.+..++..
T Consensus 399 ~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 477 (534)
T PHA03098 399 SKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP 477 (534)
T ss_pred CCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc
Confidence 3 679999999999999886 566666788888999999999843 2499999999999999988777
Q ss_pred cCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903 328 KGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 328 ~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~ 366 (387)
+..++++..+++|||+||.. ..+++||+.++ .|+.
T Consensus 478 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~ 517 (534)
T PHA03098 478 RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN----TWTL 517 (534)
T ss_pred cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC----EEEe
Confidence 77777888899999999853 57899999976 8996
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.1e-30 Score=245.37 Aligned_cols=236 Identities=13% Similarity=0.159 Sum_probs=182.8
Q ss_pred CCCCcccCCCCCCC-CCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-CC
Q 044903 108 VSSTWDPLPPPPPD-PPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TP 185 (387)
Q Consensus 108 ~~~~W~~l~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-~~ 185 (387)
....|..+...... |. +|.+|++++++++||++||.........+++++||+.+++|++++++. .+
T Consensus 5 ~~~~W~~~~~~~~~~P~------------pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p 72 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPG------------PRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVP 72 (341)
T ss_pred cCCeEEEecCCCCCCCC------------CCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCC
Confidence 45678888763211 11 155688899999999999975422334578999999999999998774 34
Q ss_pred ce---eeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC--cccccceeEEEECCEEEEEee
Q 044903 186 RR---WCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG--RFSREAIDAVGWKGKLCLVNV 260 (387)
Q Consensus 186 r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~--~~~~~~~~~v~~~g~lyv~gg 260 (387)
|. .+++++++++|||+||... ....+.+++||+.+++ |+.+++|+.. ...|..+++++++++||++||
T Consensus 73 ~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~----W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG 145 (341)
T PLN02153 73 RISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNE----WTFLTKLDEEGGPEARTFHSMASDENHVYVFGG 145 (341)
T ss_pred CCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCE----EEEeccCCCCCCCCCceeeEEEEECCEEEEECC
Confidence 43 5778899999999999865 2346789999999999 9999877210 133455889999999999999
Q ss_pred eC-----------CeEEEEECCCCceeecccc--ccCCCCCcEEEEeCCeEEEEeCC-------------CCeEEEEeCC
Q 044903 261 KG-----------AEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDEN-------------SCTLSKYDEV 314 (387)
Q Consensus 261 ~~-----------~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~-------------~~~v~~yd~~ 314 (387)
.. .++++||+++++|+.++.. .+..+.++++++.+++||+++|. ...+++||++
T Consensus 146 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~ 225 (341)
T PLN02153 146 VSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA 225 (341)
T ss_pred ccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC
Confidence 64 3689999999999998753 22455567788889999999763 2469999999
Q ss_pred CCceEEccc---cccccCceeEEEeCCeEEEEecCC--------------ceEEEEEecCCCCCceeEE
Q 044903 315 MDDWKEVVK---SDLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 315 ~~~W~~v~~---~~~~~~~~~~~~~~~~l~v~gg~~--------------~~i~v~d~~~~~~~~~W~~ 366 (387)
+++|+++.. +|..+..++++.++++|||+||.. +.+++||+.+. .|+.
T Consensus 226 ~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~----~W~~ 290 (341)
T PLN02153 226 SGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL----VWEK 290 (341)
T ss_pred CCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc----EEEe
Confidence 999999874 455666788899999999999841 37899999976 8985
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.7e-31 Score=258.25 Aligned_cols=202 Identities=12% Similarity=0.164 Sum_probs=175.9
Q ss_pred EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL 221 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~ 221 (387)
++..++.||++||... ....+.++.|||.+++|..+++|+.+|..+++++++++||++||... ..+++.||+
T Consensus 267 ~~~~~~~lyviGG~~~--~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~------~~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN--NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN------PTSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC--CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC------CCceEEEEC
Confidence 4458999999999754 34567899999999999999999999999999999999999999743 246899999
Q ss_pred CCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeE
Q 044903 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVL 298 (387)
Q Consensus 222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~l 298 (387)
.+++ |..+++||.++. .+++++++|+||++||.. ..+++|||++++|+.+++ ++..+..+++++.+|+|
T Consensus 339 ~~n~----W~~~~~l~~~r~---~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~I 410 (480)
T PHA02790 339 GDAA----WVNMPSLLKPRC---NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRL 410 (480)
T ss_pred CCCe----EEECCCCCCCCc---ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEE
Confidence 9999 999999997764 488999999999999975 568999999999999987 56666677888899999
Q ss_pred EEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903 299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~ 366 (387)
|++|| .+.+||+++++|+.+.+++..+..++++.++|+|||+||.+ ..+.+||+.++ .|++
T Consensus 411 Yv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~----~W~~ 476 (480)
T PHA02790 411 FLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY----SWNI 476 (480)
T ss_pred EEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC----eEEe
Confidence 99985 47889999999999999888888889999999999999852 46899999976 8986
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.4e-30 Score=249.44 Aligned_cols=242 Identities=14% Similarity=0.186 Sum_probs=190.5
Q ss_pred EEEEeCCC----CCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCcee
Q 044903 102 LFTFDPVS----STWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWT 177 (387)
Q Consensus 102 ~~~~d~~~----~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~ 177 (387)
.++++|.+ ++|..+.+....|. +|.+|+++++++.||++||.........+++++||+.+++|+
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~------------pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~ 206 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPG------------LRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS 206 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCC------------CccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEE
Confidence 55668755 78999876533221 266789999999999999975422234467999999999999
Q ss_pred eCCCC---CC-CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC
Q 044903 178 FGPEL---VT-PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG 253 (387)
Q Consensus 178 ~l~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g 253 (387)
+++++ |. .|..+++++++++|||+||... ....+++++||+.+++ |+.+++++....+|..|.++++++
T Consensus 207 ~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~---~~~~ndv~~yD~~t~~----W~~l~~~~~~P~~R~~h~~~~~~~ 279 (470)
T PLN02193 207 ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA---SRQYNGFYSFDTTTNE----WKLLTPVEEGPTPRSFHSMAADEE 279 (470)
T ss_pred eCCCCCCCCCCcccceEEEEECCEEEEECCCCC---CCCCccEEEEECCCCE----EEEcCcCCCCCCCccceEEEEECC
Confidence 98754 33 2457788899999999999864 2456789999999999 999998833223445588899999
Q ss_pred EEEEEeeeC-----CeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEEeCCC----CeEEEEeCCCCceEEcc
Q 044903 254 KLCLVNVKG-----AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENS----CTLSKYDEVMDDWKEVV 322 (387)
Q Consensus 254 ~lyv~gg~~-----~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g~~~----~~v~~yd~~~~~W~~v~ 322 (387)
+||++||.. .++++||+.+++|+.++. .++..+.++++++.+++||+++|.+ .++++||+++++|+.+.
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEec
Confidence 999999975 678999999999998864 2344556778888899999999854 46999999999999987
Q ss_pred cc---ccccCceeEEEeCCeEEEEecCC--------------ceEEEEEecCCCCCceeEE
Q 044903 323 KS---DLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 323 ~~---~~~~~~~~~~~~~~~l~v~gg~~--------------~~i~v~d~~~~~~~~~W~~ 366 (387)
.+ |..+..++++.++++|||+||.. +.+++||+.+. .|+.
T Consensus 360 ~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~----~W~~ 416 (470)
T PLN02193 360 TFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL----QWER 416 (470)
T ss_pred cCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC----EEEE
Confidence 53 55667788899999999999842 35899999976 8995
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=3.5e-31 Score=262.07 Aligned_cols=215 Identities=10% Similarity=0.160 Sum_probs=178.4
Q ss_pred eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.+|++++... .......+++|||.++.|..+++|+.. |..+++++++|+||++||.+. ....
T Consensus 305 ~IYviGG~~~-~~~~~~~v~~Yd~~~n~W~~~~~m~~~---------------R~~~~~~~~~g~IYviGG~~~--~~~~ 366 (557)
T PHA02713 305 EIIIAGGYNF-NNPSLNKVYKINIENKIHVELPPMIKN---------------RCRFSLAVIDDTIYAIGGQNG--TNVE 366 (557)
T ss_pred EEEEEcCCCC-CCCccceEEEEECCCCeEeeCCCCcch---------------hhceeEEEECCEEEEECCcCC--CCCC
Confidence 5888876310 011234589999999999999998862 556889999999999999754 3346
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCC---------------CCCCCceEEEEeCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQF---------------SSDVAKSVEKWDLMNGEKNS 228 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---------------~~~~~~~v~vyd~~t~~~~~ 228 (387)
+.+++|||.+++|+.+++||.+|..+++++++++|||+||..... .....+++++|||.+++
T Consensus 367 ~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--- 443 (557)
T PHA02713 367 RTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--- 443 (557)
T ss_pred ceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---
Confidence 789999999999999999999999999999999999999975311 01135789999999999
Q ss_pred CeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEECCC-CceeeccccccCCCCCcEEEEeCCeEEEE
Q 044903 229 RWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVA-NTWDDMREGMVRGWRGPVAAMDEEVLYGI 301 (387)
Q Consensus 229 ~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~~-~~W~~~~~~~~~~~~~~~~~~~~g~ly~~ 301 (387)
|+.+++|+.++.. +.+++++|+||++||.. ..+++|||++ ++|+.+++ ++..+....+++.+|+||++
T Consensus 444 -W~~v~~m~~~r~~---~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~-m~~~r~~~~~~~~~~~iyv~ 518 (557)
T PHA02713 444 -WETLPNFWTGTIR---PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT-TESRLSALHTILHDNTIMML 518 (557)
T ss_pred -EeecCCCCccccc---CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc-cCcccccceeEEECCEEEEE
Confidence 9999999977644 78899999999999864 3579999999 89999987 67777788889999999999
Q ss_pred eCCCC--eEEEEeCCCCceEEcccc
Q 044903 302 DENSC--TLSKYDEVMDDWKEVVKS 324 (387)
Q Consensus 302 g~~~~--~v~~yd~~~~~W~~v~~~ 324 (387)
||.++ .+.+||+++++|+.+.+.
T Consensus 519 Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 519 HCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eeecceeehhhcCcccccccchhhh
Confidence 99776 699999999999987653
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=7e-30 Score=238.17 Aligned_cols=220 Identities=14% Similarity=0.174 Sum_probs=174.1
Q ss_pred EEEEEe-CCC-CCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCce--
Q 044903 101 HLFTFD-PVS-STWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW-- 176 (387)
Q Consensus 101 ~~~~~d-~~~-~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W-- 176 (387)
.+++|+ +.. .+|..++++|.+ +..+.++++++.||++||... ....+++++||+.+++|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~---------------r~~~~~~~~~~~lyviGG~~~--~~~~~~v~~~d~~~~~w~~ 102 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYE---------------AAYGASVSVENGIYYIGGSNS--SERFSSVYRITLDESKEEL 102 (323)
T ss_pred eeEEEecCCCceeEEEcccCCcc---------------ccceEEEEECCEEEEEcCCCC--CCCceeEEEEEEcCCceee
Confidence 366674 433 379999988862 223567788999999999754 34567899999999998
Q ss_pred --eeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE
Q 044903 177 --TFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK 254 (387)
Q Consensus 177 --~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~ 254 (387)
+.+++||.+|..+++++++++|||+||... ....+++++||+.+++ |+.+++||... |..+.+++++++
T Consensus 103 ~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~p~~~--r~~~~~~~~~~~ 173 (323)
T TIGR03548 103 ICETIGNLPFTFENGSACYKDGTLYVGGGNRN---GKPSNKSYLFNLETQE----WFELPDFPGEP--RVQPVCVKLQNE 173 (323)
T ss_pred eeeEcCCCCcCccCceEEEECCEEEEEeCcCC---CccCceEEEEcCCCCC----eeECCCCCCCC--CCcceEEEECCE
Confidence 789999999999999999999999999743 3346789999999999 99999887422 344777889999
Q ss_pred EEEEeeeC----CeEEEEECCCCceeecccc----ccCCCCC-cEEEEeCCeEEEEeCCC--------------------
Q 044903 255 LCLVNVKG----AEGAVYDVVANTWDDMREG----MVRGWRG-PVAAMDEEVLYGIDENS-------------------- 305 (387)
Q Consensus 255 lyv~gg~~----~~i~~yD~~~~~W~~~~~~----~~~~~~~-~~~~~~~g~ly~~g~~~-------------------- 305 (387)
||++||.. .++++||+++++|+.++.. .+....+ .++++.+++||++||.+
T Consensus 174 iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 253 (323)
T TIGR03548 174 LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLK 253 (323)
T ss_pred EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhh
Confidence 99999975 4678999999999998753 1222222 33445578999999854
Q ss_pred -----------------CeEEEEeCCCCceEEcccccc-ccCceeEEEeCCeEEEEecC
Q 044903 306 -----------------CTLSKYDEVMDDWKEVVKSDL-LKGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 306 -----------------~~v~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~~~l~v~gg~ 346 (387)
..+.+||+++++|+.+..+|. .+..++++.++++||++||.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred hhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 359999999999999987763 55667889999999999885
No 11
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=2.1e-29 Score=245.30 Aligned_cols=252 Identities=17% Similarity=0.239 Sum_probs=189.1
Q ss_pred eEEEeecCCCCCCCCC-eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCC
Q 044903 84 SLYALFSPKSNSSSTP-IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPA 162 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~-~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~ 162 (387)
.+|++++... ..... ..+++||+.+++|..++++...|+. .+.++++++++++||++||... ...
T Consensus 177 ~iyv~GG~~~-~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~-----------~~~~~~~v~~~~~lYvfGG~~~--~~~ 242 (470)
T PLN02193 177 KIYSFGGEFT-PNQPIDKHLYVFDLETRTWSISPATGDVPHL-----------SCLGVRMVSIGSTLYVFGGRDA--SRQ 242 (470)
T ss_pred EEEEECCcCC-CCCCeeCcEEEEECCCCEEEeCCCCCCCCCC-----------cccceEEEEECCEEEEECCCCC--CCC
Confidence 6888887310 01112 3489999999999987754322211 1446788899999999999764 345
Q ss_pred CCccEEEeCCCCceeeCCCC---CCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903 163 LTRPLIFDPICRTWTFGPEL---VTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG 239 (387)
Q Consensus 163 ~~~~~vydp~t~~W~~l~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~ 239 (387)
.+++++||+.+++|++++++ |.+|..+++++.+++|||+||... ......+++||+.+++ |+.++.....
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~yd~~t~~----W~~~~~~~~~ 315 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDSYNIVDKK----WFHCSTPGDS 315 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEEEECCCCE----EEeCCCCCCC
Confidence 78999999999999999888 789999999999999999999865 2356789999999999 9998753222
Q ss_pred cccccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeecccc--ccCCCCCcEEEEeCCeEEEEeCCC--------
Q 044903 240 RFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENS-------- 305 (387)
Q Consensus 240 ~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~~-------- 305 (387)
...|..+.++++++++|++||.. .++++||+++++|+.++.. .+..+..+++++.+++||++||..
T Consensus 316 ~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 395 (470)
T PLN02193 316 FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHV 395 (470)
T ss_pred CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcccccc
Confidence 23345588889999999999865 7899999999999998742 355556778888999999999842
Q ss_pred ------CeEEEEeCCCCceEEcccc------ccccCcee--EEEe-C-CeEEEEecCC------ceEEEEEec
Q 044903 306 ------CTLSKYDEVMDDWKEVVKS------DLLKGARH--AAAG-G-GRVCAVCENG------GGIVVVDVK 356 (387)
Q Consensus 306 ------~~v~~yd~~~~~W~~v~~~------~~~~~~~~--~~~~-~-~~l~v~gg~~------~~i~v~d~~ 356 (387)
.++++||+++++|+.+..+ |..|..++ ++.+ + +.|+++||.+ ++++.++++
T Consensus 396 ~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~ 468 (470)
T PLN02193 396 GPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID 468 (470)
T ss_pred CccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence 2589999999999998643 33444332 2223 3 4599998863 456666665
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=2e-29 Score=237.52 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=177.9
Q ss_pred eEEEeecCCCCCCCCCeEEEEEeC--CCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC--
Q 044903 84 SLYALFSPKSNSSSTPIHLFTFDP--VSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF-- 159 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~--~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-- 159 (387)
.+|+.++. ....+++||+ .+++|..++++|..+ |..+.+++++++||++||.....
T Consensus 19 ~vyv~GG~------~~~~~~~~d~~~~~~~W~~l~~~p~~~--------------R~~~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 19 KVYVGLGS------AGTSWYKLDLKKPSKGWQKIADFPGGP--------------RNQAVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred EEEEEccc------cCCeeEEEECCCCCCCceECCCCCCCC--------------cccceEEEECCEEEEEeCCCCCCCC
Confidence 57888763 2246888885 568899999988411 44578889999999999975321
Q ss_pred --CCCCCccEEEeCCCCceeeCC-CCCCCceeeeEE-eeCCEEEEEecCCCCC-----------CC--------------
Q 044903 160 --NPALTRPLIFDPICRTWTFGP-ELVTPRRWCAAG-YSRGAVYVASGIGSQF-----------SS-------------- 210 (387)
Q Consensus 160 --~~~~~~~~vydp~t~~W~~l~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~-----------~~-------------- 210 (387)
....+++++|||.+++|++++ ++|.+|..++++ +++++|||+||..... +.
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 124678999999999999997 456666555555 6899999999975310 00
Q ss_pred ------CCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEE--CCCCcee
Q 044903 211 ------DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYD--VVANTWD 276 (387)
Q Consensus 211 ------~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD--~~~~~W~ 276 (387)
...+.+++||+.+++ |+.+++||..+ +..+.+++++++||++||.. ..++.|| +++++|+
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~----W~~~~~~p~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~ 232 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQ----WRNLGENPFLG--TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWN 232 (346)
T ss_pred CChhHcCccceEEEEECCCCc----eeECccCCCCc--CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceee
Confidence 013689999999999 99999998531 23477888999999999974 2355565 5677999
Q ss_pred eccccccCCC-------CCcEEEEeCCeEEEEeCCC----------------------CeEEEEeCCCCceEEccccccc
Q 044903 277 DMREGMVRGW-------RGPVAAMDEEVLYGIDENS----------------------CTLSKYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 277 ~~~~~~~~~~-------~~~~~~~~~g~ly~~g~~~----------------------~~v~~yd~~~~~W~~v~~~~~~ 327 (387)
.++.+ +..+ .++++++.+++||++||.. ..+.+||+++++|+.+..+|..
T Consensus 233 ~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~ 311 (346)
T TIGR03547 233 KLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG 311 (346)
T ss_pred ecCCC-CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC
Confidence 99863 3321 2334667899999999843 1478999999999999998887
Q ss_pred cCceeEEEeCCeEEEEecCC
Q 044903 328 KGARHAAAGGGRVCAVCENG 347 (387)
Q Consensus 328 ~~~~~~~~~~~~l~v~gg~~ 347 (387)
+..++++.++|+|||+||..
T Consensus 312 ~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 312 LAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred ceeeEEEEcCCEEEEEeccC
Confidence 77777888999999999864
No 13
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=9.2e-30 Score=215.67 Aligned_cols=255 Identities=15% Similarity=0.210 Sum_probs=204.1
Q ss_pred eEEEeecCCCC---CCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCC
Q 044903 84 SLYALFSPKSN---SSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFN 160 (387)
Q Consensus 84 ~l~~~~~~~~~---~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~ 160 (387)
.+|.|++-... .....+.++++|-.+-+|..+|+--.+...+..+ |..-..|+||.++.+++++|+.||.++. .
T Consensus 25 riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~y--p~VPyqRYGHtvV~y~d~~yvWGGRND~-e 101 (392)
T KOG4693|consen 25 RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPY--PAVPYQRYGHTVVEYQDKAYVWGGRNDD-E 101 (392)
T ss_pred eEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCC--CccchhhcCceEEEEcceEEEEcCccCc-c
Confidence 57777764322 2345677999999999999998722110010000 1112358999999999999999997653 5
Q ss_pred CCCCccEEEeCCCCceeeC---CCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903 161 PALTRPLIFDPICRTWTFG---PELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 161 ~~~~~~~vydp~t~~W~~l---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~ 237 (387)
...+-++.|||.|++|.+. .-+|.+|..++++++++.+|++||+.+. .....++++++|..|-+ |+.+....
T Consensus 102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~-a~~FS~d~h~ld~~Tmt----Wr~~~Tkg 176 (392)
T KOG4693|consen 102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED-AQRFSQDTHVLDFATMT----WREMHTKG 176 (392)
T ss_pred cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH-HHhhhccceeEecccee----eeehhccC
Confidence 5778899999999999984 3467899999999999999999999653 23456789999999999 99998877
Q ss_pred CCcccccceeEEEECCEEEEEeeeC--------------CeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEE
Q 044903 238 DGRFSREAIDAVGWKGKLCLVNVKG--------------AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGI 301 (387)
Q Consensus 238 ~~~~~~~~~~~v~~~g~lyv~gg~~--------------~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~ 301 (387)
.|..-|+.|+++++++.+|++||.+ ..|.++|+.++.|...+. ..|.+++.+++.+.++++|++
T Consensus 177 ~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F 256 (392)
T KOG4693|consen 177 DPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF 256 (392)
T ss_pred CCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEe
Confidence 7766688999999999999999976 678999999999998763 357788899999999999999
Q ss_pred eCCC-------CeEEEEeCCCCceEEccc---cccccCceeEEEeCCeEEEEecC
Q 044903 302 DENS-------CTLSKYDEVMDDWKEVVK---SDLLKGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 302 g~~~-------~~v~~yd~~~~~W~~v~~---~~~~~~~~~~~~~~~~l~v~gg~ 346 (387)
||.. .+++.|||++..|+.|.. -|..+...+++..++|+|+|||.
T Consensus 257 GGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 257 GGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence 9865 369999999999999863 46677777888999999999884
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=2.3e-28 Score=232.23 Aligned_cols=248 Identities=15% Similarity=0.185 Sum_probs=182.9
Q ss_pred eEEEeecCCCCCCCCCeEEEEEeCC--CCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC--
Q 044903 84 SLYALFSPKSNSSSTPIHLFTFDPV--SSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF-- 159 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-- 159 (387)
.+|++++. ....+++||+. +++|..++++|..| +.++.++++++.||++||.....
T Consensus 40 ~iyv~gG~------~~~~~~~~d~~~~~~~W~~l~~~p~~~--------------r~~~~~v~~~~~IYV~GG~~~~~~~ 99 (376)
T PRK14131 40 TVYVGLGS------AGTSWYKLDLNAPSKGWTKIAAFPGGP--------------REQAVAAFIDGKLYVFGGIGKTNSE 99 (376)
T ss_pred EEEEEeCC------CCCeEEEEECCCCCCCeEECCcCCCCC--------------cccceEEEECCEEEEEcCCCCCCCC
Confidence 68887763 22347888876 47899999887421 44578889999999999975311
Q ss_pred --CCCCCccEEEeCCCCceeeCCC-CCCCceeeeEEe-eCCEEEEEecCCCC-CC-------------------------
Q 044903 160 --NPALTRPLIFDPICRTWTFGPE-LVTPRRWCAAGY-SRGAVYVASGIGSQ-FS------------------------- 209 (387)
Q Consensus 160 --~~~~~~~~vydp~t~~W~~l~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~-~~------------------------- 209 (387)
....+++++||+.+++|+++++ +|.++..+++++ .+++|||+||.... +.
T Consensus 100 ~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 100 GSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred CceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 1235789999999999999986 355665566555 79999999997531 00
Q ss_pred -----CCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeE--EEEECCCCcee
Q 044903 210 -----SDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEG--AVYDVVANTWD 276 (387)
Q Consensus 210 -----~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i--~~yD~~~~~W~ 276 (387)
....+.+++||+.+++ |+.++++|.++ +..++++.++++||++||.. ..+ ..||+++++|+
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~----W~~~~~~p~~~--~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQ----WKNAGESPFLG--TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ 253 (376)
T ss_pred CChhhcCcCceEEEEECCCCe----eeECCcCCCCC--CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCccee
Confidence 0124689999999999 99999988532 23477888999999999963 222 34578899999
Q ss_pred eccccccCCC--------CCcEEEEeCCeEEEEeCCCC----------------------eEEEEeCCCCceEEcccccc
Q 044903 277 DMREGMVRGW--------RGPVAAMDEEVLYGIDENSC----------------------TLSKYDEVMDDWKEVVKSDL 326 (387)
Q Consensus 277 ~~~~~~~~~~--------~~~~~~~~~g~ly~~g~~~~----------------------~v~~yd~~~~~W~~v~~~~~ 326 (387)
.++.. +..+ .+..+++.+++||++||... .+.+||+++++|+.+..+|.
T Consensus 254 ~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 332 (376)
T PRK14131 254 KLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ 332 (376)
T ss_pred ecCCC-CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC
Confidence 98863 3221 12224677899999998431 25689999999999998888
Q ss_pred ccCceeEEEeCCeEEEEecCC------ceEEEEEecCC
Q 044903 327 LKGARHAAAGGGRVCAVCENG------GGIVVVDVKAA 358 (387)
Q Consensus 327 ~~~~~~~~~~~~~l~v~gg~~------~~i~v~d~~~~ 358 (387)
.+..++++.++|+|||+||.. ..+++|++..+
T Consensus 333 ~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 333 GLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred CccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence 777778899999999999852 36777877754
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=5.1e-29 Score=243.26 Aligned_cols=200 Identities=18% Similarity=0.219 Sum_probs=167.4
Q ss_pred eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.+|++++.. .......++.|||.+++|..+++|+.+ +..+++++.+++||++||... .
T Consensus 273 ~lyviGG~~--~~~~~~~v~~Ydp~~~~W~~~~~m~~~---------------r~~~~~v~~~~~iYviGG~~~-----~ 330 (480)
T PHA02790 273 VVYLIGGWM--NNEIHNNAIAVNYISNNWIPIPPMNSP---------------RLYASGVPANNKLYVVGGLPN-----P 330 (480)
T ss_pred EEEEEcCCC--CCCcCCeEEEEECCCCEEEECCCCCch---------------hhcceEEEECCEEEEECCcCC-----C
Confidence 477777631 112234588999999999999998862 334678889999999999642 2
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
+.++.|||.+++|..+++||.+|..+++++++|+|||+||... ....+++|||.+++ |+.+++|+.++..
T Consensus 331 ~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~~~~----W~~~~~m~~~r~~- 400 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-----TDTTTEYLLPNHDQ----WQFGPSTYYPHYK- 400 (480)
T ss_pred CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-----CCccEEEEeCCCCE----EEeCCCCCCcccc-
Confidence 5689999999999999999999999999999999999999753 13579999999999 9999999977654
Q ss_pred cceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCce
Q 044903 244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~-----~~v~~yd~~~~~W 318 (387)
+.+++++|+||++|| ..++||+++++|+.+++ ++..+..+++++.+|+||++||.+ ..+.+||+++++|
T Consensus 401 --~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 401 --SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred --ceEEEECCEEEEECC---ceEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 788899999999998 46999999999999987 566677788899999999999853 3599999999999
Q ss_pred EEc
Q 044903 319 KEV 321 (387)
Q Consensus 319 ~~v 321 (387)
+..
T Consensus 475 ~~~ 477 (480)
T PHA02790 475 NIW 477 (480)
T ss_pred Eec
Confidence 864
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.4e-28 Score=244.99 Aligned_cols=237 Identities=15% Similarity=0.269 Sum_probs=187.9
Q ss_pred hhHhhhhhccCCC-C--CCc---ceEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccc
Q 044903 66 VCHSWRRLIYSPS-F--PPF---LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLP 139 (387)
Q Consensus 66 Vck~W~~li~s~~-f--~~~---~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~ 139 (387)
..++|+.+...+. . ... ..+|++++... .......++.||+.+++|..+++++.+ |.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~---------------R~~ 335 (534)
T PHA03098 272 PLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNK-NNLSVNSVVSYDTKTKSWNKVPELIYP---------------RKN 335 (534)
T ss_pred hhhhcccccCccccccceEEEECCEEEEECCCcC-CCCeeccEEEEeCCCCeeeECCCCCcc---------------ccc
Confidence 3567777654441 1 111 25888886311 111223589999999999999988752 445
Q ss_pred eeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903 140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW 219 (387)
Q Consensus 140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy 219 (387)
+++++.+++||++||... ....+++++|||.+++|+.+++||.+|..++++.++++|||+||... .....+.+++|
T Consensus 336 ~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~v~~y 411 (534)
T PHA03098 336 PGVTVFNNRIYVIGGIYN--SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK--NDELLKTVECF 411 (534)
T ss_pred ceEEEECCEEEEEeCCCC--CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC--CCcccceEEEE
Confidence 788899999999999763 34567899999999999999999999999999999999999999754 23346889999
Q ss_pred eCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC--------CeEEEEECCCCceeeccccccCCCCCcEE
Q 044903 220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--------AEGAVYDVVANTWDDMREGMVRGWRGPVA 291 (387)
Q Consensus 220 d~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~ 291 (387)
|+.+++ |+.++++|.++. .+++++++++||++||.. ..+++||+++++|+.++. ++..+..+++
T Consensus 412 d~~t~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~ 483 (534)
T PHA03098 412 SLNTNK----WSKGSPLPISHY---GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASL 483 (534)
T ss_pred eCCCCe----eeecCCCCcccc---CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceE
Confidence 999999 999999997764 378899999999999964 348999999999999986 4455556777
Q ss_pred EEeCCeEEEEeCCC-----CeEEEEeCCCCceEEccccccccCc
Q 044903 292 AMDEEVLYGIDENS-----CTLSKYDEVMDDWKEVVKSDLLKGA 330 (387)
Q Consensus 292 ~~~~g~ly~~g~~~-----~~v~~yd~~~~~W~~v~~~~~~~~~ 330 (387)
++.+++||++||.. ..+++||+++++|+.+..+|+..+.
T Consensus 484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 484 CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred EEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccc
Confidence 88899999999853 4699999999999999887765543
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=4e-28 Score=228.68 Aligned_cols=215 Identities=18% Similarity=0.213 Sum_probs=164.3
Q ss_pred eeEEEeCCEEEEEcCccCCCCCCCCccEEEeC--CCCceeeCCCCC-CCceeeeEEeeCCEEEEEecCCCCC---CCCCC
Q 044903 140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDP--ICRTWTFGPELV-TPRRWCAAGYSRGAVYVASGIGSQF---SSDVA 213 (387)
Q Consensus 140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp--~t~~W~~l~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~ 213 (387)
..+++++++||++||... +.+++||+ .+++|+++++|| .+|..+++++++++|||+||..... ....+
T Consensus 11 ~~~~~~~~~vyv~GG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~ 84 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSAG------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVF 84 (346)
T ss_pred ceEEEECCEEEEEccccC------CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceec
Confidence 456678999999999632 56899996 678999999999 6899999999999999999985311 01246
Q ss_pred ceEEEEeCCCCccccCeEEcC-CCCCCcccccceeEE-EECCEEEEEeeeC-----------------------------
Q 044903 214 KSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAV-GWKGKLCLVNVKG----------------------------- 262 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v-~~~g~lyv~gg~~----------------------------- 262 (387)
..+++||+.+++ |+.++ ++|..+ ..+.++ +++|+||++||..
T Consensus 85 ~~v~~Yd~~~~~----W~~~~~~~p~~~---~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 85 DDVYRYDPKKNS----WQKLDTRSPVGL---LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred ccEEEEECCCCE----EecCCCCCCCcc---cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 789999999999 99997 344433 235555 6899999999863
Q ss_pred ----------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC------CeEEEEe--CCCCceEEcccc
Q 044903 263 ----------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS------CTLSKYD--EVMDDWKEVVKS 324 (387)
Q Consensus 263 ----------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~------~~v~~yd--~~~~~W~~v~~~ 324 (387)
..+++||+.+++|+.+++.+...+.++++++.+++||++||.. ..++.|| +++++|+++..+
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 4689999999999999874333456777888899999999843 2355554 577899999887
Q ss_pred ccccC-------ceeEEEeCCeEEEEecCC----------------------ceEEEEEecCCCCCceeEE--cCCCC
Q 044903 325 DLLKG-------ARHAAAGGGRVCAVCENG----------------------GGIVVVDVKAAAAPTIFVV--DTPLG 371 (387)
Q Consensus 325 ~~~~~-------~~~~~~~~~~l~v~gg~~----------------------~~i~v~d~~~~~~~~~W~~--~~~~~ 371 (387)
+..+. .+.++.++|+|||+||.. ..+.+||+.+. .|+. .+|..
T Consensus 238 ~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~----~W~~~~~lp~~ 311 (346)
T TIGR03547 238 PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG----KWSKVGKLPQG 311 (346)
T ss_pred CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC----cccccCCCCCC
Confidence 65331 244678999999999852 14789999865 8996 55544
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=5.8e-28 Score=225.29 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=170.2
Q ss_pred ccceeEEEeCCEEEEEcCccCCCC--------CCCCccEEEe-CCC-CceeeCCCCCCCceeeeEEeeCCEEEEEecCCC
Q 044903 137 NLPVQLVSLSGKLILLAATTHNFN--------PALTRPLIFD-PIC-RTWTFGPELVTPRRWCAAGYSRGAVYVASGIGS 206 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~--------~~~~~~~vyd-p~t-~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~ 206 (387)
..++.++++++.||++||.+.... ...+++++|+ +.. .+|..+++||.+|..+++++++++||++||...
T Consensus 4 ~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~ 83 (323)
T TIGR03548 4 VAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS 83 (323)
T ss_pred eeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC
Confidence 345778889999999999865321 1235678775 433 379999999999988888899999999999864
Q ss_pred CCCCCCCceEEEEeCCCCccccCe----EEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceee
Q 044903 207 QFSSDVAKSVEKWDLMNGEKNSRW----EKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDD 277 (387)
Q Consensus 207 ~~~~~~~~~v~vyd~~t~~~~~~W----~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~ 277 (387)
....++++.||+.+++ | ..+++||.++. .+.+++++++||++||.. .++++||+.+++|++
T Consensus 84 ---~~~~~~v~~~d~~~~~----w~~~~~~~~~lp~~~~---~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 84 ---SERFSSVYRITLDESK----EELICETIGNLPFTFE---NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred ---CCCceeEEEEEEcCCc----eeeeeeEcCCCCcCcc---CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence 3456789999999998 7 78888887654 488899999999999963 789999999999999
Q ss_pred ccccccCCCCCcEEEEeCCeEEEEeCCCC----eEEEEeCCCCceEEccccc-----ccc-CceeEEEeCCeEEEEecCC
Q 044903 278 MREGMVRGWRGPVAAMDEEVLYGIDENSC----TLSKYDEVMDDWKEVVKSD-----LLK-GARHAAAGGGRVCAVCENG 347 (387)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~g~ly~~g~~~~----~v~~yd~~~~~W~~v~~~~-----~~~-~~~~~~~~~~~l~v~gg~~ 347 (387)
++..+...+..+++++.+++||++||.++ ++++||+++++|+.+..++ ... ...+++..+++|||+||.+
T Consensus 154 ~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 154 LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 98633334556777788999999998643 4789999999999998653 222 2344556689999999853
Q ss_pred -------------------------------------ceEEEEEecCCCCCceeEE
Q 044903 348 -------------------------------------GGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 348 -------------------------------------~~i~v~d~~~~~~~~~W~~ 366 (387)
..+++||+.++ .|+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~ 285 (323)
T TIGR03548 234 KDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG----KWKS 285 (323)
T ss_pred HHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC----eeeE
Confidence 35899999976 8997
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=4.4e-26 Score=216.57 Aligned_cols=228 Identities=19% Similarity=0.226 Sum_probs=169.5
Q ss_pred CcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCC--CCceeeCCCCC-CCce
Q 044903 111 TWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPI--CRTWTFGPELV-TPRR 187 (387)
Q Consensus 111 ~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~--t~~W~~l~~~~-~~r~ 187 (387)
.+..+|+||.+ +..+++++++++||++||... +.+++||+. +++|.++++|| .+|.
T Consensus 18 ~~~~l~~lP~~---------------~~~~~~~~~~~~iyv~gG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~r~ 76 (376)
T PRK14131 18 NAEQLPDLPVP---------------FKNGTGAIDNNTVYVGLGSAG------TSWYKLDLNAPSKGWTKIAAFPGGPRE 76 (376)
T ss_pred ecccCCCCCcC---------------ccCCeEEEECCEEEEEeCCCC------CeEEEEECCCCCCCeEECCcCCCCCcc
Confidence 45677777752 222466778999999999532 457899986 47999999998 5898
Q ss_pred eeeEEeeCCEEEEEecCCCCCC---CCCCceEEEEeCCCCccccCeEEcCCC-CCCcccccceeEEE-ECCEEEEEeeeC
Q 044903 188 WCAAGYSRGAVYVASGIGSQFS---SDVAKSVEKWDLMNGEKNSRWEKTGEL-KDGRFSREAIDAVG-WKGKLCLVNVKG 262 (387)
Q Consensus 188 ~~~~~~~~~~iyv~GG~~~~~~---~~~~~~v~vyd~~t~~~~~~W~~~~~~-~~~~~~~~~~~~v~-~~g~lyv~gg~~ 262 (387)
.+++++++++|||+||...... ...++.+++||+.+++ |+.++++ |..+ ..+.+++ ++++||++||..
T Consensus 77 ~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~----W~~~~~~~p~~~---~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS----WQKLDTRSPVGL---AGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE----EEeCCCCCCCcc---cceEEEEeeCCEEEEECCCC
Confidence 8889999999999999754101 1246789999999999 9999853 4332 3366666 899999999963
Q ss_pred ---------------------------------------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeC
Q 044903 263 ---------------------------------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE 303 (387)
Q Consensus 263 ---------------------------------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~ 303 (387)
..+++||+.+++|+.+++.+...+.++++++.+++||++||
T Consensus 150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG 229 (376)
T PRK14131 150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING 229 (376)
T ss_pred HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEee
Confidence 36899999999999998743335667788888999999998
Q ss_pred CC------CeE--EEEeCCCCceEEccccccccC--------ceeEEEeCCeEEEEecCC--------------------
Q 044903 304 NS------CTL--SKYDEVMDDWKEVVKSDLLKG--------ARHAAAGGGRVCAVCENG-------------------- 347 (387)
Q Consensus 304 ~~------~~v--~~yd~~~~~W~~v~~~~~~~~--------~~~~~~~~~~l~v~gg~~-------------------- 347 (387)
.. ..+ +.||+++++|+.+..+|..+. .+.++..+++|||+||.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T PRK14131 230 EIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK 309 (376)
T ss_pred eECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc
Confidence 42 123 456889999999987765432 122567899999999842
Q ss_pred --ceEEEEEecCCCCCceeEE--cCCC
Q 044903 348 --GGIVVVDVKAAAAPTIFVV--DTPL 370 (387)
Q Consensus 348 --~~i~v~d~~~~~~~~~W~~--~~~~ 370 (387)
..+.+||+.+. .|+. .+|.
T Consensus 310 ~~~~~e~yd~~~~----~W~~~~~lp~ 332 (376)
T PRK14131 310 KSWSDEIYALVNG----KWQKVGELPQ 332 (376)
T ss_pred ceeehheEEecCC----cccccCcCCC
Confidence 12568999866 8986 5554
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=195.30 Aligned_cols=222 Identities=15% Similarity=0.193 Sum_probs=179.7
Q ss_pred cccceeEEEeCCEEEEEcCccCCCCC---CCCccEEEeCCCCceeeCCC-------------CCCCceeeeEEeeCCEEE
Q 044903 136 RNLPVQLVSLSGKLILLAATTHNFNP---ALTRPLIFDPICRTWTFGPE-------------LVTPRRWCAAGYSRGAVY 199 (387)
Q Consensus 136 ~~~~~~~~~~~~~l~v~GG~~~~~~~---~~~~~~vydp~t~~W~~l~~-------------~~~~r~~~~~~~~~~~iy 199 (387)
+|.+|++++++..||-|||++..... ..-+|+++|..+-+|.++|+ .|..|..++.+..++++|
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y 92 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY 92 (392)
T ss_pred ccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence 37789999999999999998864322 23468999999999999886 245577899999999999
Q ss_pred EEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-------CeEEEEECCC
Q 044903 200 VASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-------AEGAVYDVVA 272 (387)
Q Consensus 200 v~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-------~~i~~yD~~~ 272 (387)
|.||.++ +.+..+.++.||+++++ |.+..--..-.-+|++|+++++++.+|++||+. .+++++|..+
T Consensus 93 vWGGRND--~egaCN~Ly~fDp~t~~----W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~T 166 (392)
T KOG4693|consen 93 VWGGRND--DEGACNLLYEFDPETNV----WKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFAT 166 (392)
T ss_pred EEcCccC--cccccceeeeecccccc----ccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccc
Confidence 9999977 45778899999999999 987652222224568899999999999999986 7899999999
Q ss_pred Cceeeccc-cccCCCC-CcEEEEeCCeEEEEeCCC--------------CeEEEEeCCCCceEEcccc---ccccCceeE
Q 044903 273 NTWDDMRE-GMVRGWR-GPVAAMDEEVLYGIDENS--------------CTLSKYDEVMDDWKEVVKS---DLLKGARHA 333 (387)
Q Consensus 273 ~~W~~~~~-~~~~~~~-~~~~~~~~g~ly~~g~~~--------------~~v~~yd~~~~~W~~v~~~---~~~~~~~~~ 333 (387)
.+|+.+.. +-|..|+ .+++++.++.+|++||.. .+|..+|..++.|..-++. |.-+..+++
T Consensus 167 mtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~ 246 (392)
T KOG4693|consen 167 MTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHST 246 (392)
T ss_pred eeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccce
Confidence 99999862 2344444 567778889999999732 2588999999999997643 456678999
Q ss_pred EEeCCeEEEEecCC-------ceEEEEEecCCCCCceeEEc
Q 044903 334 AAGGGRVCAVCENG-------GGIVVVDVKAAAAPTIFVVD 367 (387)
Q Consensus 334 ~~~~~~l~v~gg~~-------~~i~v~d~~~~~~~~~W~~~ 367 (387)
..++++||+|||.. ++++.+|+.+. .|.+.
T Consensus 247 fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~----~W~~I 283 (392)
T KOG4693|consen 247 FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTS----MWSVI 283 (392)
T ss_pred EEEcceEEEecccchhhhhhhcceeecccccc----hheee
Confidence 99999999998853 57899999987 89973
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=182.70 Aligned_cols=221 Identities=14% Similarity=0.153 Sum_probs=180.6
Q ss_pred cccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC---CCCCCceeeeEEeeCCEEEEEecCCCCCCCCC
Q 044903 136 RNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP---ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDV 212 (387)
Q Consensus 136 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 212 (387)
+|.+|+++.+++++|++||..........+++++|..+..|...+ ..|.+|..+..+.++++||++||... ....
T Consensus 60 ~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~--~~~~ 137 (482)
T KOG0379|consen 60 PRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK--KYRN 137 (482)
T ss_pred hhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC--CCCC
Confidence 377899999999999999976532222225999999999999853 45688999999999999999999975 2344
Q ss_pred CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEECCCCceeeccc--cccC
Q 044903 213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMRE--GMVR 284 (387)
Q Consensus 213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~~--~~~~ 284 (387)
...++.||+.|.+ |+.+.....+..+|..|++++++.++||+||.+ +++++||+++.+|.++.. ..+.
T Consensus 138 ~~~l~~~d~~t~~----W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~ 213 (482)
T KOG0379|consen 138 LNELHSLDLSTRT----WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS 213 (482)
T ss_pred hhheEeccCCCCc----EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence 7899999999999 999987666556677799999999999999987 789999999999998862 2455
Q ss_pred CCCCcEEEEeCCeEEEEeCCC------CeEEEEeCCCCceEEcc---ccccccCceeEEEeCCeEEEEecCCc-------
Q 044903 285 GWRGPVAAMDEEVLYGIDENS------CTLSKYDEVMDDWKEVV---KSDLLKGARHAAAGGGRVCAVCENGG------- 348 (387)
Q Consensus 285 ~~~~~~~~~~~g~ly~~g~~~------~~v~~yd~~~~~W~~v~---~~~~~~~~~~~~~~~~~l~v~gg~~~------- 348 (387)
++.+|++++.++++++++|.. ++++.+|+.+.+|.++. ..|..+..|.++..+..++++||+..
T Consensus 214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~ 293 (482)
T KOG0379|consen 214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLG 293 (482)
T ss_pred CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccc
Confidence 677999999999999998754 36999999999999765 34667777888899999999998632
Q ss_pred eEEEEEecCCCCCceeEE
Q 044903 349 GIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 349 ~i~v~d~~~~~~~~~W~~ 366 (387)
..+.+|..+. .|..
T Consensus 294 ~~~~l~~~~~----~w~~ 307 (482)
T KOG0379|consen 294 DLYGLDLETL----VWSK 307 (482)
T ss_pred cccccccccc----ceee
Confidence 4577777754 7885
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.86 E-value=8.6e-20 Score=177.65 Aligned_cols=223 Identities=19% Similarity=0.240 Sum_probs=179.7
Q ss_pred eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903 84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 163 (387)
.+|++++...........++++|..+..|.........| .++.++.+++++++||++||.+. .....
T Consensus 72 ~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p------------~~r~g~~~~~~~~~l~lfGG~~~-~~~~~ 138 (482)
T KOG0379|consen 72 KLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP------------SPRYGHSLSAVGDKLYLFGGTDK-KYRNL 138 (482)
T ss_pred EEEEECCCCCCCccccceeEEeecCCcccccccccCCCC------------CcccceeEEEECCeEEEEccccC-CCCCh
Confidence 478888753222222336999999999998766544432 23788999999999999999764 24457
Q ss_pred CccEEEeCCCCceeeCC---CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903 164 TRPLIFDPICRTWTFGP---ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~ 240 (387)
++++.||+.|++|+.+. .+|.+|..|+++++++++||+||.+.. ....+++++||+++.+ |.++.......
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~--~~~~ndl~i~d~~~~~----W~~~~~~g~~P 212 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT--GDSLNDLHIYDLETST----WSELDTQGEAP 212 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCc--ccceeeeeeecccccc----ceecccCCCCC
Confidence 89999999999999964 457899999999999999999999762 3478999999999999 99998665555
Q ss_pred ccccceeEEEECCEEEEEeeeC------CeEEEEECCCCceeecc--ccccCCCCCcEEEEeCCeEEEEeCCC-------
Q 044903 241 FSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMR--EGMVRGWRGPVAAMDEEVLYGIDENS------- 305 (387)
Q Consensus 241 ~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~--~~~~~~~~~~~~~~~~g~ly~~g~~~------- 305 (387)
.+|..|++++++++++++||.. .+++.+|+.+.+|..+. ...+.++.+++.++.+.+++++||..
T Consensus 213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l 292 (482)
T KOG0379|consen 213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPL 292 (482)
T ss_pred CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccc
Confidence 5667799999999999998765 88999999999999766 34577777888888899999999743
Q ss_pred CeEEEEeCCCCceEEccccc
Q 044903 306 CTLSKYDEVMDDWKEVVKSD 325 (387)
Q Consensus 306 ~~v~~yd~~~~~W~~v~~~~ 325 (387)
++++.||.++..|+.+....
T Consensus 293 ~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 293 GDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccceeeeeccc
Confidence 35888999999999987654
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=1.1e-18 Score=160.59 Aligned_cols=273 Identities=13% Similarity=0.130 Sum_probs=187.6
Q ss_pred hhhhhccCCCCCCc----------c-eEEEeecCCCCCCCCCeE-EEEEeCCCCCcccCCCCCCCCCccccccCCCcccc
Q 044903 69 SWRRLIYSPSFPPF----------L-SLYALFSPKSNSSSTPIH-LFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSR 136 (387)
Q Consensus 69 ~W~~li~s~~f~~~----------~-~l~~~~~~~~~~~~~~~~-~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~ 136 (387)
+||++..+..-.+. . .+.+|++ .+++-.. +++||..+++|..-. ...+ . -.+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGG----GNEGiiDELHvYNTatnqWf~Pa-vrGD--i---------Ppg 81 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGG----GNEGIIDELHVYNTATNQWFAPA-VRGD--I---------PPG 81 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecC----Ccccchhhhhhhccccceeecch-hcCC--C---------CCc
Confidence 68888766332211 1 3444554 3444444 899999999997422 2211 0 011
Q ss_pred ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC-------CCCCCceeeeEEeeCCEEEEEecCCCCC-
Q 044903 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP-------ELVTPRRWCAAGYSRGAVYVASGIGSQF- 208 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~~- 208 (387)
...|.+++.+.+||+|||..+ .....++++..-...=.|+++. +.|.||-.|+..++++|-|++||..+..
T Consensus 82 cAA~GfvcdGtrilvFGGMvE-YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdse 160 (830)
T KOG4152|consen 82 CAAFGFVCDGTRILVFGGMVE-YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSE 160 (830)
T ss_pred hhhcceEecCceEEEEccEee-eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccccc
Confidence 344778889999999999654 2345566665554444677763 3568999999999999999999984421
Q ss_pred -----CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE------CCEEEEEeeeC----CeEEEEECCCC
Q 044903 209 -----SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW------KGKLCLVNVKG----AEGAVYDVVAN 273 (387)
Q Consensus 209 -----~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~------~g~lyv~gg~~----~~i~~yD~~~~ 273 (387)
-..+++++++.++..+.....|...-.......+|+.|.++.+ ..++|+.||.. .+++..|+++-
T Consensus 161 DpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl 240 (830)
T KOG4152|consen 161 DPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTL 240 (830)
T ss_pred CcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEeccee
Confidence 1246788888887755433448765433222234455999988 34799999987 89999999999
Q ss_pred ceeecc--ccccCCCCCcEEEEeCCeEEEEeCC-------------------CCeEEEEeCCCCceEEcc-------ccc
Q 044903 274 TWDDMR--EGMVRGWRGPVAAMDEEVLYGIDEN-------------------SCTLSKYDEVMDDWKEVV-------KSD 325 (387)
Q Consensus 274 ~W~~~~--~~~~~~~~~~~~~~~~g~ly~~g~~-------------------~~~v~~yd~~~~~W~~v~-------~~~ 325 (387)
.|.+.. ...+..+.-++++..|+++|++||- ...+-++++++..|+.+- ..|
T Consensus 241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiP 320 (830)
T KOG4152|consen 241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIP 320 (830)
T ss_pred ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccc
Confidence 998775 2234445567888899999999971 124788999999999874 246
Q ss_pred cccCceeEEEeCCeEEEEecCC------------ceEEEEEecCC
Q 044903 326 LLKGARHAAAGGGRVCAVCENG------------GGIVVVDVKAA 358 (387)
Q Consensus 326 ~~~~~~~~~~~~~~l~v~gg~~------------~~i~v~d~~~~ 358 (387)
+.+..+++++++.++|+..|++ .++|.+|....
T Consensus 321 R~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 321 RARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred cccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 6777899999999999998863 24566676644
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=149.99 Aligned_cols=212 Identities=14% Similarity=0.122 Sum_probs=159.3
Q ss_pred CCEEEEEcCccCC--CCCCCCccEEEeCCCCceeeC--CCCCCCceeeeEEeeC-CEEEEEecCCCCCCC---CCCceEE
Q 044903 146 SGKLILLAATTHN--FNPALTRPLIFDPICRTWTFG--PELVTPRRWCAAGYSR-GAVYVASGIGSQFSS---DVAKSVE 217 (387)
Q Consensus 146 ~~~l~v~GG~~~~--~~~~~~~~~vydp~t~~W~~l--~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~---~~~~~v~ 217 (387)
.+.|+++||.-.. .....+++++||..++.|+++ |.-|.||+.|.++++. |.+|++||.-..-++ .--.+++
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 4589999984332 123468899999999999996 5667899888777775 899999997332111 1235889
Q ss_pred EEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---------CeEEEEECCCCceeeccccc--cCCC
Q 044903 218 KWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---------AEGAVYDVVANTWDDMREGM--VRGW 286 (387)
Q Consensus 218 vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---------~~i~~yD~~~~~W~~~~~~~--~~~~ 286 (387)
+||..+++ |+.+..-. ...+|.+|.+++...+|.++||+- +++++||+++=+|..+.+.- |..+
T Consensus 158 ~fd~~trk----weql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR 232 (521)
T KOG1230|consen 158 LFDLKTRK----WEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR 232 (521)
T ss_pred eeeeccch----heeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC
Confidence 99999999 99997433 224456799999999999999975 89999999999999997532 5566
Q ss_pred CCcEEEEe-CCeEEEEeCCC--------------CeEEEEeCCC-----CceEEccc---cccccCceeEEEe-CCeEEE
Q 044903 287 RGPVAAMD-EEVLYGIDENS--------------CTLSKYDEVM-----DDWKEVVK---SDLLKGARHAAAG-GGRVCA 342 (387)
Q Consensus 287 ~~~~~~~~-~g~ly~~g~~~--------------~~v~~yd~~~-----~~W~~v~~---~~~~~~~~~~~~~-~~~l~v 342 (387)
.+.+.++. .|.||+.||.+ .+++..+++. -.|+.+.+ .|.+|..++++.. +++-+.
T Consensus 233 SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~ 312 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALF 312 (521)
T ss_pred CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEE
Confidence 67787777 88999999842 2578888876 46788764 3456666666554 569999
Q ss_pred EecC--------------CceEEEEEecCCCCCceeEE
Q 044903 343 VCEN--------------GGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 343 ~gg~--------------~~~i~v~d~~~~~~~~~W~~ 366 (387)
|||- .+.++.||...+ .|..
T Consensus 313 FGGV~D~eeeeEsl~g~F~NDLy~fdlt~n----rW~~ 346 (521)
T KOG1230|consen 313 FGGVCDLEEEEESLSGEFFNDLYFFDLTRN----RWSE 346 (521)
T ss_pred ecceecccccchhhhhhhhhhhhheecccc----hhhH
Confidence 9882 157899999976 6774
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.76 E-value=2.7e-17 Score=148.04 Aligned_cols=205 Identities=16% Similarity=0.178 Sum_probs=152.2
Q ss_pred EEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEe-CCEEEEEcCccCCC----CCCCCccEEEeCCCCc
Q 044903 101 HLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSL-SGKLILLAATTHNF----NPALTRPLIFDPICRT 175 (387)
Q Consensus 101 ~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~----~~~~~~~~vydp~t~~ 175 (387)
.+|.||..++.|+.+-.... |+. |.+|+++++ .|.+|++||.-... -....++|.||..|++
T Consensus 99 dLy~Yn~k~~eWkk~~spn~-P~p------------Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk 165 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNA-PPP------------RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK 165 (521)
T ss_pred eeeEEeccccceeEeccCCC-cCC------------CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch
Confidence 37899999999998754333 211 555777664 58999999954321 1246789999999999
Q ss_pred eeeC--CCCCCCceeeeEEeeCCEEEEEecCCCC-CCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-
Q 044903 176 WTFG--PELVTPRRWCAAGYSRGAVYVASGIGSQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW- 251 (387)
Q Consensus 176 W~~l--~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~- 251 (387)
|.++ +.-|.+|+.|..++...+|+++||.-+. .+..+.+++++||+.+-+ |.++.+-.....+|.+|...+.
T Consensus 166 weql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk----W~Klepsga~PtpRSGcq~~vtp 241 (521)
T KOG1230|consen 166 WEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK----WSKLEPSGAGPTPRSGCQFSVTP 241 (521)
T ss_pred heeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee----eeeccCCCCCCCCCCcceEEecC
Confidence 9996 4578999999999999999999998442 123567899999999999 9999863322344556887777
Q ss_pred CCEEEEEeeeC--------------CeEEEEECCC-----Cceeeccc-c-ccCCCCCcEEEEeC-CeEEEEeCC-----
Q 044903 252 KGKLCLVNVKG--------------AEGAVYDVVA-----NTWDDMRE-G-MVRGWRGPVAAMDE-EVLYGIDEN----- 304 (387)
Q Consensus 252 ~g~lyv~gg~~--------------~~i~~yD~~~-----~~W~~~~~-~-~~~~~~~~~~~~~~-g~ly~~g~~----- 304 (387)
+|.||+.||+. .+++..+++. -.|..+.+ + .|..+.+.++++.. ++-+.|||-
T Consensus 242 qg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ee 321 (521)
T KOG1230|consen 242 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEE 321 (521)
T ss_pred CCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccc
Confidence 99999999986 6778888887 36777763 2 24445556666554 477888761
Q ss_pred ---------CCeEEEEeCCCCceEEcc
Q 044903 305 ---------SCTLSKYDEVMDDWKEVV 322 (387)
Q Consensus 305 ---------~~~v~~yd~~~~~W~~v~ 322 (387)
.++++.||++.++|.+..
T Consensus 322 eeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 322 EEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred cchhhhhhhhhhhhheecccchhhHhh
Confidence 146999999999998764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.73 E-value=8.6e-17 Score=148.22 Aligned_cols=216 Identities=9% Similarity=0.091 Sum_probs=156.8
Q ss_pred CCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceee---CCCCCCCc
Q 044903 110 STWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTF---GPELVTPR 186 (387)
Q Consensus 110 ~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~---l~~~~~~r 186 (387)
-+|+++.....+ .. ..|.||.++++...|++|||.++ .-.+++++||..||+|.. -.+.|.+.
T Consensus 17 ~rWrrV~~~tGP-vP----------rpRHGHRAVaikELiviFGGGNE---GiiDELHvYNTatnqWf~PavrGDiPpgc 82 (830)
T KOG4152|consen 17 VRWRRVQQSTGP-VP----------RPRHGHRAVAIKELIVIFGGGNE---GIIDELHVYNTATNQWFAPAVRGDIPPGC 82 (830)
T ss_pred cceEEEecccCC-CC----------CccccchheeeeeeEEEecCCcc---cchhhhhhhccccceeecchhcCCCCCch
Confidence 468877655541 11 12678999999999999999754 356889999999999986 34677778
Q ss_pred eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC----CCcccccceeEEEECCEEEEEeeeC
Q 044903 187 RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK----DGRFSREAIDAVGWKGKLCLVNVKG 262 (387)
Q Consensus 187 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~----~~~~~~~~~~~v~~~g~lyv~gg~~ 262 (387)
..|+.+..+.+|||+||+-+ .+.+.+ +.|.+.... |.|+++.+-+ .+...|-+|+...++++-|+|||-.
T Consensus 83 AA~GfvcdGtrilvFGGMvE--YGkYsN--dLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLa 156 (830)
T KOG4152|consen 83 AAFGFVCDGTRILVFGGMVE--YGKYSN--DLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLA 156 (830)
T ss_pred hhcceEecCceEEEEccEee--eccccc--hHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccc
Confidence 88888888999999999865 244444 345555554 3377775332 1224455699999999999999864
Q ss_pred --------------CeEEEEECCCC----ceeecc--ccccCCCCCcEEEEe------CCeEEEEeCCC----CeEEEEe
Q 044903 263 --------------AEGAVYDVVAN----TWDDMR--EGMVRGWRGPVAAMD------EEVLYGIDENS----CTLSKYD 312 (387)
Q Consensus 263 --------------~~i~~yD~~~~----~W~~~~--~~~~~~~~~~~~~~~------~g~ly~~g~~~----~~v~~yd 312 (387)
+++++.++..+ .|...- ...+..+..+.++++ ..++|++||.. +++|-.|
T Consensus 157 NdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ld 236 (830)
T KOG4152|consen 157 NDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLD 236 (830)
T ss_pred ccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEe
Confidence 66777766533 587543 223555556777765 34799999854 5799999
Q ss_pred CCCCceEEcc---ccccccCceeEEEeCCeEEEEec
Q 044903 313 EVMDDWKEVV---KSDLLKGARHAAAGGGRVCAVCE 345 (387)
Q Consensus 313 ~~~~~W~~v~---~~~~~~~~~~~~~~~~~l~v~gg 345 (387)
+++-.|.+.. ..|..+..+.++.+++|+|||||
T Consensus 237 l~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGG 272 (830)
T KOG4152|consen 237 LDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGG 272 (830)
T ss_pred cceeecccccccCCCCCCcccccceeecceeEEecc
Confidence 9999999975 33556777889999999999987
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.53 E-value=6.5e-13 Score=118.44 Aligned_cols=235 Identities=16% Similarity=0.174 Sum_probs=156.7
Q ss_pred eEEEeecCCCCCCCCCeEEEEEeCCC--CCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC--
Q 044903 84 SLYALFSPKSNSSSTPIHLFTFDPVS--STWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF-- 159 (387)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~d~~~--~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-- 159 (387)
.+|+-++ +....+|.+|... ..|..+...|..+ |-+...++++++||++||.....
T Consensus 48 ~~YVGLG------s~G~afy~ldL~~~~k~W~~~a~FpG~~--------------rnqa~~a~~~~kLyvFgG~Gk~~~~ 107 (381)
T COG3055 48 TVYVGLG------SAGTAFYVLDLKKPGKGWTKIADFPGGA--------------RNQAVAAVIGGKLYVFGGYGKSVSS 107 (381)
T ss_pred eEEEEec------cCCccceehhhhcCCCCceEcccCCCcc--------------cccchheeeCCeEEEeeccccCCCC
Confidence 5777665 2456688888665 5799999988732 44566788999999999976532
Q ss_pred -CCCCCccEEEeCCCCceeeCCCC-CCCceeeeEEeeCC-EEEEEecCCCCC----------------------------
Q 044903 160 -NPALTRPLIFDPICRTWTFGPEL-VTPRRWCAAGYSRG-AVYVASGIGSQF---------------------------- 208 (387)
Q Consensus 160 -~~~~~~~~vydp~t~~W~~l~~~-~~~r~~~~~~~~~~-~iyv~GG~~~~~---------------------------- 208 (387)
.+..+++++|||.+|+|+++... |..-..+.++..++ +||+.||.....
T Consensus 108 ~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 108 SPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred CceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 23467899999999999998643 33344566666766 999999974320
Q ss_pred ---CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEECC--CCceee
Q 044903 209 ---SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVV--ANTWDD 277 (387)
Q Consensus 209 ---~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~--~~~W~~ 277 (387)
+-.....+..|||.+++ |+.+...|.-. ++..+.+.-++++.++.|.- ..+..+|.. ..+|..
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~----W~~~G~~pf~~--~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQ----WRNLGENPFYG--NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred CHHHhcccccccccccccch----hhhcCcCcccC--ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 11234577889999999 99998666332 22222333456687887654 445566665 448998
Q ss_pred cccccc-CC-----CCCcEEEEeCCeEEEEeCC------------------------CCeEEEEeCCCCceEEccccccc
Q 044903 278 MREGMV-RG-----WRGPVAAMDEEVLYGIDEN------------------------SCTLSKYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 278 ~~~~~~-~~-----~~~~~~~~~~g~ly~~g~~------------------------~~~v~~yd~~~~~W~~v~~~~~~ 327 (387)
+.+.++ .+ ..+.-.-..++.+.+.|+. ..+|+.+| ++.|+.+..+|..
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~ 339 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG 339 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC
Confidence 864222 11 1111111234455555541 12578888 8899999999985
Q ss_pred cCceeEEEeCCeEEEEecC
Q 044903 328 KGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 328 ~~~~~~~~~~~~l~v~gg~ 346 (387)
..-.+.+..+++||+|||.
T Consensus 340 l~YG~s~~~nn~vl~IGGE 358 (381)
T COG3055 340 LAYGVSLSYNNKVLLIGGE 358 (381)
T ss_pred ccceEEEecCCcEEEEccc
Confidence 5555677889999999985
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.50 E-value=2e-12 Score=115.36 Aligned_cols=191 Identities=18% Similarity=0.242 Sum_probs=137.4
Q ss_pred EEEeCCEEEEEcCccCCCCCCCCccEEEeCC--CCceeeCCCCC-CCceeeeEEeeCCEEEEEecCCCCCC--CCCCceE
Q 044903 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPI--CRTWTFGPELV-TPRRWCAAGYSRGAVYVASGIGSQFS--SDVAKSV 216 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~--t~~W~~l~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~v 216 (387)
-+..++.+||--|... ...++.|.. .+.|++++..| .+|.....++++++|||+||.+.... ....+++
T Consensus 42 Ga~ig~~~YVGLGs~G------~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~ 115 (381)
T COG3055 42 GALIGDTVYVGLGSAG------TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDA 115 (381)
T ss_pred cceecceEEEEeccCC------ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeee
Confidence 3446778888766322 345666665 46899999988 78889999999999999999865322 3456889
Q ss_pred EEEeCCCCccccCeEEcCCC-CCCcccccceeEEEECC-EEEEEeeeC--------------------------------
Q 044903 217 EKWDLMNGEKNSRWEKTGEL-KDGRFSREAIDAVGWKG-KLCLVNVKG-------------------------------- 262 (387)
Q Consensus 217 ~vyd~~t~~~~~~W~~~~~~-~~~~~~~~~~~~v~~~g-~lyv~gg~~-------------------------------- 262 (387)
+.||+.+++ |.++... |... ..+.++.+++ ++|++||..
T Consensus 116 Y~y~p~~ns----W~kl~t~sP~gl---~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 116 YRYDPSTNS----WHKLDTRSPTGL---VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred EEecCCCCh----hheecccccccc---ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 999999999 9998743 3332 3477788888 899999864
Q ss_pred -------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC------CeEEEEeC--CCCceEEccccccc
Q 044903 263 -------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS------CTLSKYDE--VMDDWKEVVKSDLL 327 (387)
Q Consensus 263 -------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~------~~v~~yd~--~~~~W~~v~~~~~~ 327 (387)
..+.+|||.+++|+.+...+-.+..+.+++.-++++.++.|+- ..+++++. +..+|..++.+|..
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 5688999999999998864555556666666677788887642 23555554 56689999876553
Q ss_pred cC-----cee--EEEeCCeEEEEec
Q 044903 328 KG-----ARH--AAAGGGRVCAVCE 345 (387)
Q Consensus 328 ~~-----~~~--~~~~~~~l~v~gg 345 (387)
.+ -.. .-..++.+.|.||
T Consensus 269 ~~~~~eGvAGaf~G~s~~~~lv~GG 293 (381)
T COG3055 269 IGSNKEGVAGAFSGKSNGEVLVAGG 293 (381)
T ss_pred CCCCccccceeccceeCCeEEEecC
Confidence 32 111 2235677888877
No 29
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.19 E-value=1.2e-08 Score=90.46 Aligned_cols=185 Identities=13% Similarity=0.104 Sum_probs=115.2
Q ss_pred CccEEEeCCCCceeeCCCCCCCce---e--eeEEe----eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRR---W--CAAGY----SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG 234 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~---~--~~~~~----~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~ 234 (387)
..+.++||.|++|+.+|+.+.++. . .+.+. ...||..+..... ......+++|++.+++ |+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~---~~~~~~~~Vys~~~~~----Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG---NRNQSEHQVYTLGSNS----WRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC---CCCCccEEEEEeCCCC----ccccc
Confidence 468999999999999987554211 1 11111 1225555543211 1134578999999999 99998
Q ss_pred CCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceee-ccccccCC--CCCcEEEEeCCeEEEEeCCC-
Q 044903 235 ELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDD-MREGMVRG--WRGPVAAMDEEVLYGIDENS- 305 (387)
Q Consensus 235 ~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~-~~~~~~~~--~~~~~~~~~~g~ly~~g~~~- 305 (387)
..+..... ...++.++|.+|.+.... ..|.+||+.+++|++ ++...... .....++..+|+|.++....
T Consensus 87 ~~~~~~~~--~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 87 CSPPHHPL--KSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred cCCCCccc--cCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC
Confidence 54322111 123788999999987543 279999999999995 65311111 12345677789999887432
Q ss_pred -C--eEEEEe-CCCCceEEcccccc-----ccC--ceeEEEeCCeEEEEecC--CceEEEEEecC
Q 044903 306 -C--TLSKYD-EVMDDWKEVVKSDL-----LKG--ARHAAAGGGRVCAVCEN--GGGIVVVDVKA 357 (387)
Q Consensus 306 -~--~v~~yd-~~~~~W~~v~~~~~-----~~~--~~~~~~~~~~l~v~gg~--~~~i~v~d~~~ 357 (387)
. +||+.+ .+.+.|++.-..+. ... ....+..+|+|++.... +..+..||+.+
T Consensus 165 ~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~ 229 (230)
T TIGR01640 165 TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE 229 (230)
T ss_pred CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence 2 345443 44667998654431 111 13456778999998654 33388999874
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.16 E-value=9.2e-11 Score=77.17 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=43.3
Q ss_pred ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCc
Q 044903 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR 186 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r 186 (387)
|.++++++.+++||++||.... ....+++++||+.|++|+++++||.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 4568899999999999997664 567889999999999999999999887
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.02 E-value=8.7e-10 Score=72.48 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=44.4
Q ss_pred CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903 185 PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~ 240 (387)
+|.++++++++++|||+||.... ....+++++||+++++ |+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~----W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNT----WEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCc----EEECCCCCCCC
Confidence 57889999999999999999763 4678899999999999 99999999764
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.83 E-value=5e-09 Score=67.87 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=41.9
Q ss_pred CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903 185 PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~ 237 (387)
||..+++++++++|||+||... .....+++++||+.+++ |+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~----W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG--NNQPTNSVEVYDPETNT----WEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES--TSSBEEEEEEEETTTTE----EEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc--cCceeeeEEEEeCCCCE----EEEcCCCC
Confidence 5888999999999999999976 45678899999999999 99999886
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.80 E-value=4.1e-09 Score=68.27 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=40.5
Q ss_pred ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC
Q 044903 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV 183 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~ 183 (387)
|.++++++.+++||++||... .....+++++||+.+++|+++++||
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 556899999999999999876 3567788999999999999999886
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.80 E-value=1.5e-08 Score=66.20 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=42.2
Q ss_pred CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe
Q 044903 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY 193 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~ 193 (387)
++++|++||.........+++++||+.+++|++++++|.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 578999999874346678999999999999999999999999988875
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.77 E-value=1.8e-07 Score=83.41 Aligned_cols=278 Identities=17% Similarity=0.158 Sum_probs=137.9
Q ss_pred CCCCh----HHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCCcc--------e------------EEEeecCCCCC
Q 044903 43 LPGLP----DHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPFL--------S------------LYALFSPKSNS 95 (387)
Q Consensus 43 ~~~LP----~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~~~--------~------------l~~~~~~~~~~ 95 (387)
+..|| |+|.++||+.|. +..+..|||+|+++++++..++.+ + .|.+...++..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~~~ 154 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPNDG 154 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCCCcC
Confidence 45789 999999999999 777889999999999998775321 0 11111110000
Q ss_pred CCCCeEEEE--E-------eCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCcc
Q 044903 96 SSTPIHLFT--F-------DPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRP 166 (387)
Q Consensus 96 ~~~~~~~~~--~-------d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 166 (387)
.-....++. | +...+.|+....+-.. +.+++- ...|.-+..+++...|.|-. -+.+
T Consensus 155 ~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~r------inc~Se--~skgVYClQYDD~kiVSGlr-------DnTi 219 (499)
T KOG0281|consen 155 GFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQR------INCRSE--NSKGVYCLQYDDEKIVSGLR-------DNTI 219 (499)
T ss_pred CcCCCcchhhhhHHHHHHHhhhhcchhccceeeee------ecCCcc--cCCceEEEEecchhhhcccc-------cCce
Confidence 001111110 0 1222345443322210 000100 01122244456666665542 2445
Q ss_pred EEEeCCCCceeeCCCCCCCceeee-EEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccc
Q 044903 167 LIFDPICRTWTFGPELVTPRRWCA-AGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA 245 (387)
Q Consensus 167 ~vydp~t~~W~~l~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~ 245 (387)
-++|-.+..-.+. ..+..... +.-.++++.|.|..+. ++-++|..|++ --. .-....+.
T Consensus 220 kiWD~n~~~c~~~---L~GHtGSVLCLqyd~rviisGSSDs--------TvrvWDv~tge----~l~-----tlihHcea 279 (499)
T KOG0281|consen 220 KIWDKNSLECLKI---LTGHTGSVLCLQYDERVIVSGSSDS--------TVRVWDVNTGE----PLN-----TLIHHCEA 279 (499)
T ss_pred EEeccccHHHHHh---hhcCCCcEEeeeccceEEEecCCCc--------eEEEEeccCCc----hhh-----HHhhhcce
Confidence 6666554332221 11111111 2234677777665443 78899998887 111 10011111
Q ss_pred eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCC-CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903 246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR-GPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS 324 (387)
Q Consensus 246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~-~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~ 324 (387)
.-...+.+-+.+....+..+.++|+..-+=..+.. ...|.+ +..++-.+++..+-...+.++.+|+..+..... .+
T Consensus 280 VLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rr-VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvR--tl 356 (499)
T KOG0281|consen 280 VLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRR-VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVR--TL 356 (499)
T ss_pred eEEEEEeCCEEEEecCCceeEEEeccCchHHHHHH-HHhhhhhheeeeccccceEEEecCCceEEEEeccceeeeh--hh
Confidence 11223334344444444667777665444111111 111211 222334456633333345679999988876554 33
Q ss_pred ccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
...+...+|..+.|+++|-|..++.|-++|+..+
T Consensus 357 ~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 357 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred hcccccceehhccCeEEEecCCCceEEEEecccc
Confidence 3445566777888888888766676777776643
No 36
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.76 E-value=2.8e-05 Score=72.41 Aligned_cols=139 Identities=9% Similarity=0.036 Sum_probs=77.9
Q ss_pred eEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccc----cccCC-C-CCcEEEEeCCeEEEEeC
Q 044903 230 WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE----GMVRG-W-RGPVAAMDEEVLYGIDE 303 (387)
Q Consensus 230 W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~----~~~~~-~-~~~~~~~~~g~ly~~g~ 303 (387)
|+.+..+... ....+.++|++|++... ..++++|.+-. =.++.. .+..+ + .....+...|+|+++..
T Consensus 192 Wt~l~~~~~~-----~~DIi~~kGkfYAvD~~-G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R 264 (373)
T PLN03215 192 LKALKQMGYH-----FSDIIVHKGQTYALDSI-GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVER 264 (373)
T ss_pred eeEccCCCce-----eeEEEEECCEEEEEcCC-CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEE
Confidence 9999753322 25688999999999543 35666664311 011111 11111 1 12345666788998863
Q ss_pred C-----------------CCe--EEEEeCCCCceEEcccccccc------CceeEE------EeCCeEEEEecCCceEEE
Q 044903 304 N-----------------SCT--LSKYDEVMDDWKEVVKSDLLK------GARHAA------AGGGRVCAVCENGGGIVV 352 (387)
Q Consensus 304 ~-----------------~~~--v~~yd~~~~~W~~v~~~~~~~------~~~~~~------~~~~~l~v~gg~~~~i~v 352 (387)
. ... |+..|.+..+|.++..+.... ..+++. .-+|.||+. .+....|
T Consensus 265 ~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt--dd~~~~v 342 (373)
T PLN03215 265 LPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT--EDTMPKV 342 (373)
T ss_pred EccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE--CCCcceE
Confidence 1 012 455588889999998765321 111111 125778888 4556678
Q ss_pred EEecCCCCCceeEEcCCCCceeeEEE
Q 044903 353 VDVKAAAAPTIFVVDTPLGFEALSVH 378 (387)
Q Consensus 353 ~d~~~~~~~~~W~~~~~~~~~~~~~~ 378 (387)
||+..+ .+....+.+++..+++..-
T Consensus 343 ~~~~dg-~~~~~~~~~~~~~~~~~~~ 367 (373)
T PLN03215 343 FKLDNG-NGSSIETTISESSQSSFEM 367 (373)
T ss_pred EECCCC-CccceEeecCccccchhee
Confidence 888854 4344555555555555433
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.73 E-value=3.6e-08 Score=64.33 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=39.9
Q ss_pred ccceeEEEeCCEEEEEcCc-cCCCCCCCCccEEEeCCCCceeeCCCCC
Q 044903 137 NLPVQLVSLSGKLILLAAT-THNFNPALTRPLIFDPICRTWTFGPELV 183 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~-~~~~~~~~~~~~vydp~t~~W~~l~~~~ 183 (387)
|.+|++++.+++||++||. ........+++++||+.|++|+++++|+
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 5678999999999999998 2233556788999999999999999875
No 38
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.69 E-value=3e-06 Score=75.05 Aligned_cols=201 Identities=12% Similarity=0.105 Sum_probs=115.6
Q ss_pred eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC
Q 044903 100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG 179 (387)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l 179 (387)
..++++||.|++|+.+|+.+..+.. +......+|+....-+.+++.+..... ......+.+|+..+++|+.+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~------~~~~~~~~G~d~~~~~YKVv~~~~~~~--~~~~~~~~Vys~~~~~Wr~~ 85 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSN------KESDTYFLGYDPIEKQYKVLCFSDRSG--NRNQSEHQVYTLGSNSWRTI 85 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccc------cccceEEEeecccCCcEEEEEEEeecC--CCCCccEEEEEeCCCCcccc
Confidence 4588999999999999865431100 000000223333333456777654321 11235679999999999998
Q ss_pred CCCCCC-ceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEE-cCCCCCCcc-cccceeEEEECCEEE
Q 044903 180 PELVTP-RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK-TGELKDGRF-SREAIDAVGWKGKLC 256 (387)
Q Consensus 180 ~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~-~~~~~~~~~-~~~~~~~v~~~g~ly 256 (387)
...+.. ......+.++|.+|-+...... .....+..||..+++ |++ ++ +|.... .......+.++|+|.
T Consensus 86 ~~~~~~~~~~~~~v~~~G~lyw~~~~~~~---~~~~~IvsFDl~~E~----f~~~i~-~P~~~~~~~~~~~L~~~~G~L~ 157 (230)
T TIGR01640 86 ECSPPHHPLKSRGVCINGVLYYLAYTLKT---NPDYFIVSFDVSSER----FKEFIP-LPCGNSDSVDYLSLINYKGKLA 157 (230)
T ss_pred ccCCCCccccCCeEEECCEEEEEEEECCC---CCcEEEEEEEcccce----Eeeeee-cCccccccccceEEEEECCEEE
Confidence 743321 1112267789999877643321 111278999999999 996 44 443321 112245677899999
Q ss_pred EEeeeC----CeEEEEE-CCCCceeecccc-c--cCCC---CCcEEEEeCCeEEEEeCC-CCe-EEEEeCCCC
Q 044903 257 LVNVKG----AEGAVYD-VVANTWDDMREG-M--VRGW---RGPVAAMDEEVLYGIDEN-SCT-LSKYDEVMD 316 (387)
Q Consensus 257 v~gg~~----~~i~~yD-~~~~~W~~~~~~-~--~~~~---~~~~~~~~~g~ly~~g~~-~~~-v~~yd~~~~ 316 (387)
++.... -.+++.+ -..+.|++.-.. + .... ..+..+..+|+|.+.... .+. +..||++++
T Consensus 158 ~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 886532 2445543 335579854211 0 1111 123445667888877653 234 899999874
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.66 E-value=8e-08 Score=62.68 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=41.2
Q ss_pred CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903 185 PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~ 237 (387)
+|..+++++.+++|||+||..........+++++||+++++ |+.+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~----W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQ----WTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCE----EeecCCCC
Confidence 57789999999999999999322235678899999999999 99998765
No 40
>smart00612 Kelch Kelch domain.
Probab=98.61 E-value=6.2e-08 Score=62.53 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=40.0
Q ss_pred EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCC
Q 044903 148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRG 196 (387)
Q Consensus 148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~ 196 (387)
+||++||... ....+++++|||.+++|+++++|+.+|..++++.+++
T Consensus 1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999754 3567889999999999999999999999888877654
No 41
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.60 E-value=1.3e-08 Score=65.87 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=32.3
Q ss_pred CCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCC
Q 044903 43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP 80 (387)
Q Consensus 43 ~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~ 80 (387)
|..||+||+.+||++|| +.++..|||+|+.++.++.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 56899999999999999 888999999999999888553
No 42
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.59 E-value=7.5e-08 Score=89.76 Aligned_cols=173 Identities=13% Similarity=0.081 Sum_probs=116.2
Q ss_pred eCCCCceeeCCCC----------CCCceeeeEEeeCC--EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903 170 DPICRTWTFGPEL----------VTPRRWCAAGYSRG--AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 170 dp~t~~W~~l~~~----------~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~ 237 (387)
.+.+-+|.+.++- |..|+.|-.+...+ -||+.||.+. ...+.+.+.|+...+. |..+..-.
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~----W~~iN~~t 307 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQ----WTCINRDT 307 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc---chhHHHHHhhcCCcce----eEEeecCC
Confidence 3456689886542 34566665555544 8999999976 3567789999999999 99886332
Q ss_pred CCcccccceeEEEECC--EEEEEeeeC-----------CeEEEEECCCCceeecccc-----ccCCCCCcEEEEeCCe--
Q 044903 238 DGRFSREAIDAVGWKG--KLCLVNVKG-----------AEGAVYDVVANTWDDMREG-----MVRGWRGPVAAMDEEV-- 297 (387)
Q Consensus 238 ~~~~~~~~~~~v~~~g--~lyv~gg~~-----------~~i~~yD~~~~~W~~~~~~-----~~~~~~~~~~~~~~g~-- 297 (387)
...-.|..|.+|..-. +||++|-+- .+++.||..++.|.-+... -|.....+.+++.+.+
T Consensus 308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~ 387 (723)
T KOG2437|consen 308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM 387 (723)
T ss_pred CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence 2212233366666555 899987542 7899999999999987632 2222335667777777
Q ss_pred EEEEeCC--------CCeEEEEeCCCCceEEccccccc----------cCcee--EEEeCCeEEEEecCCce
Q 044903 298 LYGIDEN--------SCTLSKYDEVMDDWKEVVKSDLL----------KGARH--AAAGGGRVCAVCENGGG 349 (387)
Q Consensus 298 ly~~g~~--------~~~v~~yd~~~~~W~~v~~~~~~----------~~~~~--~~~~~~~l~v~gg~~~~ 349 (387)
|||+||. .+.++.||.....|......-.. +-.++ ...-+..+|++||.+..
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 9999973 24699999999999987532111 11222 33446789999876543
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.55 E-value=8e-08 Score=62.74 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=30.1
Q ss_pred ccceeEEEe-CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCC
Q 044903 137 NLPVQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT 184 (387)
Q Consensus 137 ~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~ 184 (387)
|.+|+++.+ ++.||++||.... ....+++++||+.+++|+++++||.
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~-~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSS-GSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS--
T ss_pred cceEEEEEEeCCeEEEECCCCCC-CcccCCEEEEECCCCEEEECCCCCC
Confidence 566888887 5899999998763 2578899999999999999988873
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.44 E-value=2.4e-07 Score=60.48 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=30.6
Q ss_pred CceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903 185 PRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK 237 (387)
Q Consensus 185 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~ 237 (387)
||..|+++.+ +++|||+||... ....++++++||+.+++ |++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~--~~~~~~d~~~~d~~~~~----W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS--SGSPLNDLWIFDIETNT----WTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE---TEE---EEEEETTTTE----EEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCC--CCcccCCEEEEECCCCE----EEECCCCC
Confidence 5778888888 589999999976 23578899999999999 99998877
No 45
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.42 E-value=3.3e-07 Score=85.57 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=112.1
Q ss_pred CCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCC--EEEEEcCccCCCCCCCCccEEEeCCCCceeeCC---C
Q 044903 107 PVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSG--KLILLAATTHNFNPALTRPLIFDPICRTWTFGP---E 181 (387)
Q Consensus 107 ~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~---~ 181 (387)
+-+-+|..+++....-.. .. ...+.|-||+.+...+ .||+.||+++ .+.+.++|.|+...++|.... .
T Consensus 236 ey~~~W~~i~~~~~~~~~-~~----~~p~~RgGHQMV~~~~~~CiYLYGGWdG--~~~l~DFW~Y~v~e~~W~~iN~~t~ 308 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDG-ED----NRPGMRGGHQMVIDVQTECVYLYGGWDG--TQDLADFWAYSVKENQWTCINRDTE 308 (723)
T ss_pred cccccccccCchhhcccc-cc----cCccccCcceEEEeCCCcEEEEecCccc--chhHHHHHhhcCCcceeEEeecCCC
Confidence 344578887764421000 00 1135578899988665 9999999987 567889999999999999853 4
Q ss_pred CCCCceeeeEEeeC--CEEEEEecCCCCC---CCCCCceEEEEeCCCCccccCeEEcCC------CCCCcccccceeEEE
Q 044903 182 LVTPRRWCAAGYSR--GAVYVASGIGSQF---SSDVAKSVEKWDLMNGEKNSRWEKTGE------LKDGRFSREAIDAVG 250 (387)
Q Consensus 182 ~~~~r~~~~~~~~~--~~iyv~GG~~~~~---~~~~~~~v~vyd~~t~~~~~~W~~~~~------~~~~~~~~~~~~~v~ 250 (387)
.|-.|..|..+..- .|+|+.|-+-... .....+++++||..++. |..+.- -|...+ .|.+++
T Consensus 309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~----W~~ls~dt~~dGGP~~vf---DHqM~V 381 (723)
T KOG2437|consen 309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT----WMLLSEDTAADGGPKLVF---DHQMCV 381 (723)
T ss_pred CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce----eEEecccccccCCcceee---cceeeE
Confidence 66777666555443 4899998763211 12456789999999999 987751 121122 277888
Q ss_pred ECCE--EEEEeeeC--------CeEEEEECCCCceeecc
Q 044903 251 WKGK--LCLVNVKG--------AEGAVYDVVANTWDDMR 279 (387)
Q Consensus 251 ~~g~--lyv~gg~~--------~~i~~yD~~~~~W~~~~ 279 (387)
.+.+ +||+||.. ..+++||.....|..+.
T Consensus 382 d~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 382 DSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred ecCcceEEEecCeeccCCCccccceEEEecCCccHHHHH
Confidence 8777 99999976 67899999999998775
No 46
>smart00612 Kelch Kelch domain.
Probab=98.33 E-value=1.2e-06 Score=56.38 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=37.8
Q ss_pred EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC
Q 044903 197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG 253 (387)
Q Consensus 197 ~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g 253 (387)
+||++||... ....+.+++||+.+++ |+.+++|+.++.. +++++++|
T Consensus 1 ~iyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~~~~r~~---~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG---GQRLKSVEVYDPETNK----WTPLPSMPTPRSG---HGVAVING 47 (47)
T ss_pred CEEEEeCCCC---CceeeeEEEECCCCCe----EccCCCCCCcccc---ceEEEeCC
Confidence 5899999854 3457789999999999 9999999977643 66777664
No 47
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.33 E-value=4e-07 Score=56.82 Aligned_cols=35 Identities=40% Similarity=0.510 Sum_probs=32.5
Q ss_pred ChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCC
Q 044903 46 LPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP 80 (387)
Q Consensus 46 LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~ 80 (387)
||+|++.+||++|+ +.++++|||+|+.++.++.++
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999 888999999999999998774
No 48
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.31 E-value=2.1e-06 Score=55.91 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=39.0
Q ss_pred CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE
Q 044903 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG 250 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~ 250 (387)
+++|||+||... ......+++++||+.+++ |++++++|.+|.. |++++
T Consensus 1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~----W~~~~~~P~~R~~---h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNT----WTRIGDLPPPRSG---HTATV 48 (49)
T ss_pred CCEEEEECCcCC-CCCCEecCEEEEECCCCE----EEECCCCCCCccc---eEEEE
Confidence 578999999983 135678899999999999 9999998877644 77665
No 49
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=98.24 E-value=0.0024 Score=59.94 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=97.8
Q ss_pred eeEEEe-CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCC--CCceE
Q 044903 140 VQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSD--VAKSV 216 (387)
Q Consensus 140 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~v 216 (387)
..++++ +.+|+.++.. ....+||..|..-..+|.++.+.....+..++++||+........... ....+
T Consensus 69 ~~F~al~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred eEEEEecCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 444454 8888888653 347999999999999999888777777888899999998764321110 01156
Q ss_pred EEEeCC------CCccccCeEEcCCCCCCccccc----ceeEEEECC-EEEE-EeeeCCeEEEEECCCCceeeccccccC
Q 044903 217 EKWDLM------NGEKNSRWEKTGELKDGRFSRE----AIDAVGWKG-KLCL-VNVKGAEGAVYDVVANTWDDMREGMVR 284 (387)
Q Consensus 217 ~vyd~~------t~~~~~~W~~~~~~~~~~~~~~----~~~~v~~~g-~lyv-~gg~~~~i~~yD~~~~~W~~~~~~~~~ 284 (387)
|+++.. .....|.|+.+++.|....... ..+-++++| .|+| +.+.....++||+++.+|+.... ...
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd-W~L 219 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD-WML 219 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc-eec
Confidence 665221 2223355888887654332211 223344444 5666 32221258999999999999875 333
Q ss_pred CCCCcEEEEeCCeEEEE-eCCC--CeEEEEeCCC
Q 044903 285 GWRGPVAAMDEEVLYGI-DENS--CTLSKYDEVM 315 (387)
Q Consensus 285 ~~~~~~~~~~~g~ly~~-g~~~--~~v~~yd~~~ 315 (387)
.+.+.+.-+.+-.+++= .... +.+...|...
T Consensus 220 PF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 220 PFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred CcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 33333333222223321 1112 3566666544
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.18 E-value=0.0024 Score=61.43 Aligned_cols=219 Identities=11% Similarity=0.125 Sum_probs=128.5
Q ss_pred EEEEEeCCCC--CcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--e
Q 044903 101 HLFTFDPVSS--TWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--W 176 (387)
Q Consensus 101 ~~~~~d~~~~--~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W 176 (387)
.++++|..++ .|+.-.+-+. ....+..++.+|+..+ ...++.+|+.|.+ |
T Consensus 131 ~l~ald~~tG~~~W~~~~~~~~------------------~ssP~v~~~~v~v~~~--------~g~l~ald~~tG~~~W 184 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVAGEA------------------LSRPVVSDGLVLVHTS--------NGMLQALNESDGAVKW 184 (394)
T ss_pred EEEEEECCCCCCcccccCCCce------------------ecCCEEECCEEEEECC--------CCEEEEEEccCCCEee
Confidence 5788998775 4765321111 0122345777777543 1368899998875 8
Q ss_pred eeCCCCCC--CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc-----ccccceeEE
Q 044903 177 TFGPELVT--PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR-----FSREAIDAV 249 (387)
Q Consensus 177 ~~l~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~-----~~~~~~~~v 249 (387)
+.-...+. .+...+.++.++.+|+..+. ..+..+|..+++.. |+.-...+... .......-+
T Consensus 185 ~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~~--W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 185 TVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQLI--WQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred eecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChhh--heeccccCCCccchhcccccCCCcE
Confidence 76433221 12233445567777775432 24677888888755 87532222110 000112345
Q ss_pred EECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceEEccccc
Q 044903 250 GWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD--DWKEVVKSD 325 (387)
Q Consensus 250 ~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~ 325 (387)
+.++.+|+.+. ...+.++|+.++ .|+.--.. ....++.+++||+.. .++.++.+|.++. .|+.-....
T Consensus 254 v~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~------~~~~~~~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALAY-NGNLVALDLRSGQIVWKREYGS------VNDFAVDGGRIYLVD-QNDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEEc-CCeEEEEECCCCCEEEeecCCC------ccCcEEECCEEEEEc-CCCeEEEEECCCCcEEEcccccCC
Confidence 67999998753 348899999876 58763211 113456788999886 4688999999765 576421111
Q ss_pred cccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCC
Q 044903 326 LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTP 369 (387)
Q Consensus 326 ~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~ 369 (387)
......+..+|+||+. ..++.++++|..++ ...|+....
T Consensus 326 --~~~~sp~v~~g~l~v~-~~~G~l~~ld~~tG--~~~~~~~~~ 364 (394)
T PRK11138 326 --RLLTAPVLYNGYLVVG-DSEGYLHWINREDG--RFVAQQKVD 364 (394)
T ss_pred --CcccCCEEECCEEEEE-eCCCEEEEEECCCC--CEEEEEEcC
Confidence 1122334568888876 45567889998743 356887553
No 51
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.13 E-value=6.2e-07 Score=58.19 Aligned_cols=37 Identities=38% Similarity=0.541 Sum_probs=30.4
Q ss_pred CCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCC
Q 044903 43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF 79 (387)
Q Consensus 43 ~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f 79 (387)
|..||+|++.+||.+|+ +.+++.|||+|++++.++.+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~ 42 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRL 42 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCc
Confidence 45799999999999999 88999999999999988654
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.05 E-value=0.0033 Score=60.43 Aligned_cols=206 Identities=14% Similarity=0.064 Sum_probs=115.9
Q ss_pred EEEEEeCCCCC--cccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ce
Q 044903 101 HLFTFDPVSST--WDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TW 176 (387)
Q Consensus 101 ~~~~~d~~~~~--W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W 176 (387)
.++.+|+.+++ |+.-...+. .. . +.....+..++.+|+..+ + ..++.+|+.+. .|
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~---~~---------~-~~~~sP~v~~~~v~~~~~-~-------g~v~a~d~~~G~~~W 229 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPS---LT---------L-RGESAPATAFGGAIVGGD-N-------GRVSAVLMEQGQLIW 229 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCc---cc---------c-cCCCCCEEECCEEEEEcC-C-------CEEEEEEccCChhhh
Confidence 57888988765 765332221 00 0 000122334666666433 1 35677888776 47
Q ss_pred eeCCCCCCC-----c---eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeE
Q 044903 177 TFGPELVTP-----R---RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDA 248 (387)
Q Consensus 177 ~~l~~~~~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~ 248 (387)
+.-...+.. | ...+.++.++.+|+.+.. ..+..+|..+++.. |+.-. ... ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~---------g~l~ald~~tG~~~--W~~~~--~~~------~~~ 290 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN---------GNLVALDLRSGQIV--WKREY--GSV------NDF 290 (394)
T ss_pred eeccccCCCccchhcccccCCCcEEECCEEEEEEcC---------CeEEEEECCCCCEE--EeecC--CCc------cCc
Confidence 642111110 1 123345668889886532 25788999988765 87632 111 224
Q ss_pred EEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eEEcccc
Q 044903 249 VGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD--WKEVVKS 324 (387)
Q Consensus 249 v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~--W~~v~~~ 324 (387)
+..++++|+.+.. ..+.++|.+++ .|+.-.. ......+.++.+++||+.+ .+|.++++|+++.+ |+.-.
T Consensus 291 ~~~~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~---~~~~~~sp~v~~g~l~v~~-~~G~l~~ld~~tG~~~~~~~~-- 363 (394)
T PRK11138 291 AVDGGRIYLVDQN-DRVYALDTRGGVELWSQSDL---LHRLLTAPVLYNGYLVVGD-SEGYLHWINREDGRFVAQQKV-- 363 (394)
T ss_pred EEECCEEEEEcCC-CeEEEEECCCCcEEEccccc---CCCcccCCEEECCEEEEEe-CCCEEEEEECCCCCEEEEEEc--
Confidence 5678999987643 47899999876 5875321 1111223455688998765 47889999987764 54311
Q ss_pred ccccCceeEEEeCCeEEEEecCCceEEEEE
Q 044903 325 DLLKGARHAAAGGGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d 354 (387)
.........+..+++|||- ..++.++.++
T Consensus 364 ~~~~~~s~P~~~~~~l~v~-t~~G~l~~~~ 392 (394)
T PRK11138 364 DSSGFLSEPVVADDKLLIQ-ARDGTVYAIT 392 (394)
T ss_pred CCCcceeCCEEECCEEEEE-eCCceEEEEe
Confidence 1111122334568888887 4455666654
No 53
>PLN02772 guanylate kinase
Probab=97.99 E-value=5e-05 Score=71.04 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=63.0
Q ss_pred CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEEeeeC
Q 044903 184 TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG 262 (387)
Q Consensus 184 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~gg~~ 262 (387)
.++..++++.+++++||+||..+ .....+.+++||..|.+ |....-...+..+|.+|+++++ +++|+|+++..
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d--~~~~~~~v~i~D~~t~~----W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHE--GNTLSIGVQILDKITNN----WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCC--CccccceEEEEECCCCc----EecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 36777899999999999999765 23367899999999999 9988755444456677999988 67899996544
Q ss_pred ---CeEEEEECCC
Q 044903 263 ---AEGAVYDVVA 272 (387)
Q Consensus 263 ---~~i~~yD~~~ 272 (387)
..++.....|
T Consensus 97 ~~~~~~w~l~~~t 109 (398)
T PLN02772 97 APDDSIWFLEVDT 109 (398)
T ss_pred CCccceEEEEcCC
Confidence 4555554443
No 54
>PLN02772 guanylate kinase
Probab=97.95 E-value=6.6e-05 Score=70.28 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=56.1
Q ss_pred ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC---CCCCCCceeeeEEee-CCEEEEEecCCC
Q 044903 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG---PELVTPRRWCAAGYS-RGAVYVASGIGS 206 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l---~~~~~~r~~~~~~~~-~~~iyv~GG~~~ 206 (387)
+..+.++++++++||+||.++ .....+.+++||..|++|... ...|.+|..|+++++ +++|+|+++...
T Consensus 25 ~~~~tav~igdk~yv~GG~~d-~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 25 KNRETSVTIGDKTYVIGGNHE-GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred CCcceeEEECCEEEEEcccCC-CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 334788999999999999665 233678899999999999984 567889988888888 579999987654
No 55
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.94 E-value=0.0002 Score=63.04 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=92.2
Q ss_pred ccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC----CccccCeEEcC-CCCCC
Q 044903 165 RPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN----GEKNSRWEKTG-ELKDG 239 (387)
Q Consensus 165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t----~~~~~~W~~~~-~~~~~ 239 (387)
...+||+.|++++.+.-....-+...+..-+|++.+.||... ....+..|++.+ .. |.+.+ .|..+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~----w~e~~~~m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCD----WTESPNDMQSG 117 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCC----ceECcccccCC
Confidence 347899999999987643333333333445889999999855 234677788876 45 98886 47766
Q ss_pred cccccceeEE-EECCEEEEEeeeCC-eEEEEECCCC-----ceeeccc---cccCCCCCcEEEEeCCeEEEEeCCCCeEE
Q 044903 240 RFSREAIDAV-GWKGKLCLVNVKGA-EGAVYDVVAN-----TWDDMRE---GMVRGWRGPVAAMDEEVLYGIDENSCTLS 309 (387)
Q Consensus 240 ~~~~~~~~~v-~~~g~lyv~gg~~~-~i~~yD~~~~-----~W~~~~~---~~~~~~~~~~~~~~~g~ly~~g~~~~~v~ 309 (387)
|.- .++. .-||++.|+||... ..+.+..... .|..+.. ..+..+.-.....-+|+||+++.. .-.
T Consensus 118 RWY---pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~ 192 (243)
T PF07250_consen 118 RWY---PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSI 192 (243)
T ss_pred Ccc---ccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcE
Confidence 642 3333 34899999999873 3344433221 2222221 122223334455678999999753 456
Q ss_pred EEeCCCCce-EEcccccc
Q 044903 310 KYDEVMDDW-KEVVKSDL 326 (387)
Q Consensus 310 ~yd~~~~~W-~~v~~~~~ 326 (387)
+||.+++++ +.++.+|.
T Consensus 193 i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred EEeCCCCeEEeeCCCCCC
Confidence 789999976 56665543
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.87 E-value=0.0042 Score=61.59 Aligned_cols=282 Identities=16% Similarity=0.101 Sum_probs=139.2
Q ss_pred CCCCCCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCCcc--eEEEeecCCCC----CCCC-----CeEEE
Q 044903 38 DHQPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPFL--SLYALFSPKSN----SSST-----PIHLF 103 (387)
Q Consensus 38 ~~~~~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~~~--~l~~~~~~~~~----~~~~-----~~~~~ 103 (387)
.+...+..||-|+...||..|+ +..++.||+.|+.++.+....... .+.....+... .... ....+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~ 182 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFY 182 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhh
Confidence 4567889999999999999999 888999999999999987664311 11111100000 0000 00000
Q ss_pred E-EeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC-CC
Q 044903 104 T-FDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG-PE 181 (387)
Q Consensus 104 ~-~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l-~~ 181 (387)
. .......|............. . ..+. ..+....+..+..|- . ...+.+||..+..-... ..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-------~~~~q~~~~~~~~~s-~------~~tl~~~~~~~~~~i~~~l~ 246 (537)
T KOG0274|consen 183 RRRFRLSKNWRKLFRRGYKVLLG-T-DDHV-------VLCLQLHDGFFKSGS-D------DSTLHLWDLNNGYLILTRLV 246 (537)
T ss_pred hhhhhccccccccccccceeecc-c-Ccch-------hhhheeecCeEEecC-C------CceeEEeecccceEEEeecc
Confidence 0 011112333322211100000 0 0000 011111111222221 1 12335777776665544 22
Q ss_pred CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEE-Eee
Q 044903 182 LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCL-VNV 260 (387)
Q Consensus 182 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv-~gg 260 (387)
............-++.+++.|..+. ++-++|..+++ -..+-... .....+......+. .|.
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS~D~--------t~rvWd~~sg~----C~~~l~gh------~stv~~~~~~~~~~~sgs 308 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGSTDK--------TERVWDCSTGE----CTHSLQGH------TSSVRCLTIDPFLLVSGS 308 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEecCC--------cEEeEecCCCc----EEEEecCC------CceEEEEEccCceEeecc
Confidence 2222221111122355666665443 66777777776 43332111 00112222233333 344
Q ss_pred eCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCC-e
Q 044903 261 KGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG-R 339 (387)
Q Consensus 261 ~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~-~ 339 (387)
.+..+.++|.++..--.+-.+ ..+ ....+..++.+.+.|..++.|.+||+.+. +-+..+..+........+++ .
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~-h~~--~V~~v~~~~~~lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~~V~sl~~~~~~ 383 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRG-HTG--PVNCVQLDEPLLVSGSYDGTVKVWDPRTG--KCLKSLSGHTGRVYSLIVDSEN 383 (537)
T ss_pred CCceEEEEeccCcceEEEecc-ccc--cEEEEEecCCEEEEEecCceEEEEEhhhc--eeeeeecCCcceEEEEEecCcc
Confidence 558888898886655444322 111 11223445667777777889999999844 33334434444555556677 6
Q ss_pred EEEEecCCceEEEEEecCC
Q 044903 340 VCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 340 l~v~gg~~~~i~v~d~~~~ 358 (387)
.++-|.-+..|-++|+.+.
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred eEEeeeeccceEeecCCch
Confidence 6666666778899988853
No 57
>PF13854 Kelch_5: Kelch motif
Probab=97.87 E-value=4.3e-05 Score=47.81 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=34.3
Q ss_pred CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903 182 LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN 223 (387)
Q Consensus 182 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t 223 (387)
+|.+|..|++++++++|||+||... ......+++++||..+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 4778999999999999999999973 1356778999999876
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.86 E-value=0.01 Score=56.54 Aligned_cols=161 Identities=15% Similarity=0.067 Sum_probs=92.6
Q ss_pred ccEEEeCCCC--ceeeCCCCCCCc--------eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC
Q 044903 165 RPLIFDPICR--TWTFGPELVTPR--------RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG 234 (387)
Q Consensus 165 ~~~vydp~t~--~W~~l~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~ 234 (387)
.++.+|+.+. .|+.-...+... ........++.+|+.... ..+.+||..+++.. |..-.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~~--W~~~~ 269 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRVL--WKRDA 269 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcEE--Eeecc
Confidence 5788898776 476522111111 112334557788876432 25788999888755 87642
Q ss_pred CCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEe
Q 044903 235 ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYD 312 (387)
Q Consensus 235 ~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd 312 (387)
.. ....+..++++|+.... ..+.++|..++ .|+.... ... ...+.++.+++||+.+ .++.++++|
T Consensus 270 --~~------~~~p~~~~~~vyv~~~~-G~l~~~d~~tG~~~W~~~~~--~~~-~~ssp~i~g~~l~~~~-~~G~l~~~d 336 (377)
T TIGR03300 270 --SS------YQGPAVDDNRLYVTDAD-GVVVALDRRSGSELWKNDEL--KYR-QLTAPAVVGGYLVVGD-FEGYLHWLS 336 (377)
T ss_pred --CC------ccCceEeCCEEEEECCC-CeEEEEECCCCcEEEccccc--cCC-ccccCEEECCEEEEEe-CCCEEEEEE
Confidence 11 12345678999987533 47899998765 6875321 111 1123345678888765 578999999
Q ss_pred CCCC--ceEEccccccccCceeEEEeCCeEEEEecCCceEEE
Q 044903 313 EVMD--DWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVV 352 (387)
Q Consensus 313 ~~~~--~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v 352 (387)
.++. .|+.- .+........+..+++||+.+ .++.++.
T Consensus 337 ~~tG~~~~~~~--~~~~~~~~sp~~~~~~l~v~~-~dG~l~~ 375 (377)
T TIGR03300 337 REDGSFVARLK--TDGSGIASPPVVVGDGLLVQT-RDGDLYA 375 (377)
T ss_pred CCCCCEEEEEE--cCCCccccCCEEECCEEEEEe-CCceEEE
Confidence 8765 34321 111111234467778888774 4445544
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.85 E-value=0.017 Score=50.90 Aligned_cols=185 Identities=16% Similarity=0.229 Sum_probs=111.3
Q ss_pred EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW 219 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy 219 (387)
.+..++.+|+..+ ...++.+|..|.+ |+.-.+ .+- .......++.+||..+. ..+..+
T Consensus 32 ~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~~--~~~-~~~~~~~~~~v~v~~~~---------~~l~~~ 91 (238)
T PF13360_consen 32 AVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDLP--GPI-SGAPVVDGGRVYVGTSD---------GSLYAL 91 (238)
T ss_dssp EEEETTEEEEEET--------TSEEEEEETTTSEEEEEEECS--SCG-GSGEEEETTEEEEEETT---------SEEEEE
T ss_pred EEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeecc--ccc-cceeeecccccccccce---------eeeEec
Confidence 3447888888743 2578999998874 665332 111 11147778899887621 178999
Q ss_pred eCCCCccccCeE-EcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCC--------C
Q 044903 220 DLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWR--------G 288 (387)
Q Consensus 220 d~~t~~~~~~W~-~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~--------~ 288 (387)
|..+++.. |+ .....+.... .......+.++.+|+... ...+.++|++++ .|+.--. .+.... .
T Consensus 92 d~~tG~~~--W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 92 DAKTGKVL--WSIYLTSSPPAGV-RSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDIN 166 (238)
T ss_dssp ETTTSCEE--EEEEE-SSCTCST-B--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEE
T ss_pred ccCCccee--eeecccccccccc-ccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccc
Confidence 99988866 98 4443222211 111334444677766542 458999999876 6875432 221110 1
Q ss_pred cEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eEEccccccccCcee-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903 289 PVAAMDEEVLYGIDENSCTLSKYDEVMDD--WKEVVKSDLLKGARH-AAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 289 ~~~~~~~g~ly~~g~~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~-~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
...++.++.+|+... .+.+..+|.++.+ |+.. ...... ....++.||+.. ....++.+|.+++
T Consensus 167 ~~~~~~~~~v~~~~~-~g~~~~~d~~tg~~~w~~~-----~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 167 GSPVISDGRVYVSSG-DGRVVAVDLATGEKLWSKP-----ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEECCTTEEEEECC-TSSEEEEETTTTEEEEEEC-----SS-ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred cceEEECCEEEEEcC-CCeEEEEECCCCCEEEEec-----CCCccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 234445678888864 4446666999886 7442 111222 456677787775 7899999999854
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.67 E-value=0.017 Score=55.09 Aligned_cols=194 Identities=15% Similarity=0.188 Sum_probs=109.3
Q ss_pred eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEE
Q 044903 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEK 218 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~v 218 (387)
..+..++.+|+.+.. ..++.+|+.+.+ |+.-..-. ...+.++.++++|+.... ..+..
T Consensus 60 ~p~v~~~~v~v~~~~--------g~v~a~d~~tG~~~W~~~~~~~---~~~~p~v~~~~v~v~~~~---------g~l~a 119 (377)
T TIGR03300 60 QPAVAGGKVYAADAD--------GTVVALDAETGKRLWRVDLDER---LSGGVGADGGLVFVGTEK---------GEVIA 119 (377)
T ss_pred ceEEECCEEEEECCC--------CeEEEEEccCCcEeeeecCCCC---cccceEEcCCEEEEEcCC---------CEEEE
Confidence 345567888876541 358899988764 87532211 112334557778865321 26889
Q ss_pred EeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCC-CCcEEEEeC
Q 044903 219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDE 295 (387)
Q Consensus 219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~ 295 (387)
+|..+++.. |+.-.. ... ....+..++.+|+..+ ...+.++|++++ .|+.......... ...+.++.+
T Consensus 120 ld~~tG~~~--W~~~~~--~~~----~~~p~v~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~ 190 (377)
T TIGR03300 120 LDAEDGKEL--WRAKLS--SEV----LSPPLVANGLVVVRTN-DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD 190 (377)
T ss_pred EECCCCcEe--eeeccC--cee----ecCCEEECCEEEEECC-CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence 999888755 875432 111 1234456788887643 347899999865 6875432211111 112334556
Q ss_pred CeEEEEeCCCCeEEEEeCCCC--ceEEcccccccc--------CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeE
Q 044903 296 EVLYGIDENSCTLSKYDEVMD--DWKEVVKSDLLK--------GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 296 g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~~~~--------~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~ 365 (387)
+.+| ++..++.+..+|+++. .|+.-...+... .....+..++.+|+. ..++.++.+|..++ ...|+
T Consensus 191 ~~v~-~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~-~~~g~l~a~d~~tG--~~~W~ 266 (377)
T TIGR03300 191 GGVL-VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV-SYQGRVAALDLRSG--RVLWK 266 (377)
T ss_pred CEEE-EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE-EcCCEEEEEECCCC--cEEEe
Confidence 6555 4555688999998764 586422111100 011223456777775 34567888887632 35576
Q ss_pred Ec
Q 044903 366 VD 367 (387)
Q Consensus 366 ~~ 367 (387)
..
T Consensus 267 ~~ 268 (377)
T TIGR03300 267 RD 268 (377)
T ss_pred ec
Confidence 53
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.63 E-value=0.025 Score=49.86 Aligned_cols=179 Identities=20% Similarity=0.197 Sum_probs=105.1
Q ss_pred ccEEEeCCCC--ceeeCCCCCCCceeee--EEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903 165 RPLIFDPICR--TWTFGPELVTPRRWCA--AGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 165 ~~~vydp~t~--~W~~l~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~ 240 (387)
.+..+|+.+. .|+.- +........ ....++.+|+..+ ...+.++|..+++.. |+.-. +.+.
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~--W~~~~--~~~~ 68 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKVL--WRFDL--PGPI 68 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEEE--EEEEC--SSCG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCEE--EEeec--cccc
Confidence 4566777665 36651 111122222 4447888998842 236899999888855 87665 2221
Q ss_pred ccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceee-ccccccC-CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 241 FSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDD-MREGMVR-GWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 241 ~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~-~~~~~~~-~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
. ......++.+|+.... ..+.++|.+++ .|+. ....... .......++.++.+|+.. ..+.+..+|+++.
T Consensus 69 ~----~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG 142 (238)
T PF13360_consen 69 S----GAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSGKLVALDPKTG 142 (238)
T ss_dssp G----SGEEEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCSEEEEEETTTT
T ss_pred c----ceeeecccccccccce-eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-ccCcEEEEecCCC
Confidence 1 2247789999988633 38999998766 7983 4321111 222345555677776665 4789999998865
Q ss_pred --ceEEccccccccC--------ceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEc
Q 044903 317 --DWKEVVKSDLLKG--------ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD 367 (387)
Q Consensus 317 --~W~~v~~~~~~~~--------~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~ 367 (387)
.|+.-...++... ...++..++.+|+..+.+. +..+|..++ ...|+..
T Consensus 143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg--~~~w~~~ 200 (238)
T PF13360_consen 143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATG--EKLWSKP 200 (238)
T ss_dssp EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTT--EEEEEEC
T ss_pred cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCC--CEEEEec
Confidence 5776444333211 2345555788888854444 555587754 1348655
No 62
>PF13854 Kelch_5: Kelch motif
Probab=97.62 E-value=0.00015 Score=45.31 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=31.7
Q ss_pred ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC
Q 044903 137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR 174 (387)
Q Consensus 137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~ 174 (387)
|.+|+++.++++||++||.........+++|+||..++
T Consensus 5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 77899999999999999987433567899999998763
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.54 E-value=0.0061 Score=54.40 Aligned_cols=187 Identities=21% Similarity=0.167 Sum_probs=108.3
Q ss_pred CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE 225 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~ 225 (387)
++.||+..- ....++.+|+.+++-+.... +. ....+...-++++|++... ...++|+.+++
T Consensus 11 ~g~l~~~D~-------~~~~i~~~~~~~~~~~~~~~-~~-~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDI-------PGGRIYRVDPDTGEVEVIDL-PG-PNGMAFDRPDGRLYVADSG----------GIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEET-------TTTEEEEEETTTTEEEEEES-SS-EEEEEEECTTSEEEEEETT----------CEEEEETTTTE
T ss_pred CCEEEEEEc-------CCCEEEEEECCCCeEEEEec-CC-CceEEEEccCCEEEEEEcC----------ceEEEecCCCc
Confidence 677888743 23578999999987654321 11 1111122236889988653 23666999998
Q ss_pred cccCeEEcCCCCCC--cccccceeEEEECCEEEEEeeeC--------CeEEEEECCCCceeeccccccCCCCCcEEEEeC
Q 044903 226 KNSRWEKTGELKDG--RFSREAIDAVGWKGKLCLVNVKG--------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDE 295 (387)
Q Consensus 226 ~~~~W~~~~~~~~~--~~~~~~~~~v~~~g~lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~ 295 (387)
++.+...+.. ...+.+-.++.-+|.||+-.-.. ..++.+++. .+.+.+...+... .+.+....+
T Consensus 72 ----~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p-NGi~~s~dg 145 (246)
T PF08450_consen 72 ----VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP-NGIAFSPDG 145 (246)
T ss_dssp ----EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE-EEEEEETTS
T ss_pred ----EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc-cceEECCcc
Confidence 8888765321 11112233444578899864322 247888888 6665554433221 112222224
Q ss_pred CeEEEEeCCCCeEEEEeCCCCc--eEEcc---ccccccC-cee-EEEeCCeEEEEecCCceEEEEEecC
Q 044903 296 EVLYGIDENSCTLSKYDEVMDD--WKEVV---KSDLLKG-ARH-AAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 296 g~ly~~g~~~~~v~~yd~~~~~--W~~v~---~~~~~~~-~~~-~~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
+.||+.....+.|++||.+... +.... ..+...+ .-. ++--+|+|||....++.|.++|+..
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 4689988778899999886443 43322 2222221 222 3345789999877789999999983
No 64
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.52 E-value=0.0014 Score=57.72 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=89.4
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---CeEEEEECCC----CceeeccccccC-CC
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVA----NTWDDMREGMVR-GW 286 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~----~~W~~~~~~~~~-~~ 286 (387)
...+||+.+++ ++.+.-......+ ..+..-||++.+.||.. ..+..|++.. ..|.+....|.. .|
T Consensus 47 ~s~~yD~~tn~----~rpl~v~td~FCS---gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNT----FRPLTVQTDTFCS---GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEEecCCCc----EEeccCCCCCccc---CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence 45789999999 9988743333211 22334589999999876 6788899865 579888754544 45
Q ss_pred CCcEEEEeCCeEEEEeCCCCeEEEEeCCCC---ceEE---ccc----cccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903 287 RGPVAAMDEEVLYGIDENSCTLSKYDEVMD---DWKE---VVK----SDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 287 ~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~---~W~~---v~~----~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
........+|+++++||.....+.|-+... .... +.. .+....++..+.-+|+||+++.. ...+||..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeCC
Confidence 666666789999999997765555655421 1111 111 12233357777889999999643 46667888
Q ss_pred CC
Q 044903 357 AA 358 (387)
Q Consensus 357 ~~ 358 (387)
.+
T Consensus 198 ~n 199 (243)
T PF07250_consen 198 TN 199 (243)
T ss_pred CC
Confidence 65
No 65
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.40 E-value=0.015 Score=51.82 Aligned_cols=179 Identities=18% Similarity=0.083 Sum_probs=96.0
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-----CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-----TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW 219 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy 219 (387)
.++.+|+... ....++|+.+++++.+...+ ..+..-.++.-+|++|+..-............+..+
T Consensus 50 ~~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 50 PDGRLYVADS---------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp TTSEEEEEET---------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred cCCEEEEEEc---------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 3678888764 23466799999998876653 222333444446789987543321111111568888
Q ss_pred eCCCCccccCeEEcC-CCCCCcccccceeEEEECC-EEEEEeeeCCeEEEEECCCCc--eeeccc--cccCCCC-CcEEE
Q 044903 220 DLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANT--WDDMRE--GMVRGWR-GPVAA 292 (387)
Q Consensus 220 d~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~~--W~~~~~--~~~~~~~-~~~~~ 292 (387)
++. .+ ...+. .+..+ +.-+..-++ .||+.......++.||+.... +..... .+..... ...++
T Consensus 121 ~~~-~~----~~~~~~~~~~p-----NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~ 190 (246)
T PF08450_consen 121 DPD-GK----VTVVADGLGFP-----NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLA 190 (246)
T ss_dssp ETT-SE----EEEEEEEESSE-----EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE
T ss_pred CCC-Ce----EEEEecCcccc-----cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcce
Confidence 888 55 44443 22211 122233345 588876666789999986433 332211 1111110 11233
Q ss_pred E-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE---eCCeEEEEe
Q 044903 293 M-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA---GGGRVCAVC 344 (387)
Q Consensus 293 ~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~---~~~~l~v~g 344 (387)
+ .+|+||+.....+.|.+||++.+.-..+..+ .. ....++. -.+.|||..
T Consensus 191 vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p-~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 191 VDSDGNLWVADWGGGRIVVFDPDGKLLREIELP-VP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S-SS-SEEEEEEESTTSSEEEEEE
T ss_pred EcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC-CC-CEEEEEEECCCCCEEEEEe
Confidence 3 3688999876678999999997765555533 22 2222222 235677764
No 66
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.32 E-value=0.019 Score=53.93 Aligned_cols=119 Identities=9% Similarity=0.001 Sum_probs=75.5
Q ss_pred eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC----C------
Q 044903 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----A------ 263 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~------ 263 (387)
.+.+|+.++.. ..+.+||..+.. =...|.+..+... -.++.++++||++.... .
T Consensus 75 ~gskIv~~d~~---------~~t~vyDt~t~a----v~~~P~l~~pk~~---pisv~VG~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 75 HGSKIVAVDQS---------GRTLVYDTDTRA----VATGPRLHSPKRC---PISVSVGDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred cCCeEEEEcCC---------CCeEEEECCCCe----EeccCCCCCCCcc---eEEEEeCCeEEEeeccCccccccCccce
Confidence 58888887544 247899999998 6666666654432 45677899999997653 1
Q ss_pred eEEE--EEC--------CCCceeeccccccCCCC-------CcEEEEe-CCeEEEEe-CCCCeEEEEeCCCCceEEcc--
Q 044903 264 EGAV--YDV--------VANTWDDMREGMVRGWR-------GPVAAMD-EEVLYGID-ENSCTLSKYDEVMDDWKEVV-- 322 (387)
Q Consensus 264 ~i~~--yD~--------~~~~W~~~~~~~~~~~~-------~~~~~~~-~g~ly~~g-~~~~~v~~yd~~~~~W~~v~-- 322 (387)
..++ |++ ..-.|+.+++ ++.... -.+-+++ |..||+-. +.....+.||.++.+|++++
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccce
Confidence 3344 442 1227888875 232221 2233455 66777732 21225899999999999998
Q ss_pred ccccccC
Q 044903 323 KSDLLKG 329 (387)
Q Consensus 323 ~~~~~~~ 329 (387)
.+|....
T Consensus 218 ~LPF~G~ 224 (342)
T PF07893_consen 218 MLPFHGQ 224 (342)
T ss_pred ecCcCCc
Confidence 4555443
No 67
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.12 E-value=0.12 Score=46.83 Aligned_cols=172 Identities=17% Similarity=0.085 Sum_probs=83.2
Q ss_pred CccEEEeCCCCceeeCCCC-CCCceeeeEEeeC-CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903 164 TRPLIFDPICRTWTFGPEL-VTPRRWCAAGYSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~-~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~ 241 (387)
..+.+||+.+++-...-.. ..++. ....-+ ..+|+.++.. ..+.+||..+.+ ....-.....
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~--l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~-- 74 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRG--ITLSKDGKLLYVCASDS--------DTIQVIDLATGE----VIGTLPSGPD-- 74 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCc--eEECCCCCEEEEEECCC--------CeEEEEECCCCc----EEEeccCCCC--
Confidence 3677788877654332111 11221 111223 3567776532 267889998877 5432111111
Q ss_pred cccceeEEEECC-EEEEEeeeCCeEEEEECCCCce-eeccccccCCCCCcEEE-EeCCeEEEEeCCCC-eEEEEeCCCCc
Q 044903 242 SREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAA-MDEEVLYGIDENSC-TLSKYDEVMDD 317 (387)
Q Consensus 242 ~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~-~v~~yd~~~~~ 317 (387)
. . ..+..-++ .+|+.++....+.+||+.+.+- ..++. +.....++ ..++++++++...+ .+..||.++.+
T Consensus 75 ~-~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 75 P-E-LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred c-c-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 0 1 11222244 4666655556899999987532 22221 11112223 23566666654443 46778887653
Q ss_pred eEEccccccccCceeEEEeCCeEEEEec-CCceEEEEEecCC
Q 044903 318 WKEVVKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAA 358 (387)
Q Consensus 318 W~~v~~~~~~~~~~~~~~~~~~l~v~gg-~~~~i~v~d~~~~ 358 (387)
-..... ............+++.+++++ .++.+.+||..+.
T Consensus 149 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 149 IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 322111 111112223344555444443 4678889998754
No 68
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.05 E-value=0.23 Score=53.82 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=110.4
Q ss_pred eeEEEe--CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCC------------------CCCCceeeeEEe--eCCE
Q 044903 140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE------------------LVTPRRWCAAGY--SRGA 197 (387)
Q Consensus 140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~------------------~~~~r~~~~~~~--~~~~ 197 (387)
+.++.. ++.|||....+ ..+.++|+.++.-+.++. +..|. ..+. .++.
T Consensus 627 ~GIavd~~gn~LYVaDt~n-------~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~---gVa~dp~~g~ 696 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN-------HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW---DVCFEPVNEK 696 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC-------ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe---EEEEecCCCe
Confidence 444443 45688875421 457788887776554421 11111 2222 2678
Q ss_pred EEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC----------C-CcccccceeE-EEEC-CEEEEEeeeCCe
Q 044903 198 VYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK----------D-GRFSREAIDA-VGWK-GKLCLVNVKGAE 264 (387)
Q Consensus 198 iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~----------~-~~~~~~~~~~-v~~~-g~lyv~gg~~~~ 264 (387)
+||..... +.+.+||..++. ......-. . ..+. ..... +.-+ +.||+.....+.
T Consensus 697 LyVad~~~--------~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~-~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 697 VYIAMAGQ--------HQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFA-QPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred EEEEECCC--------CeEEEEECCCCe----EEEEecCCccccCCCCcccccccc-CccEEEEeCCCCEEEEEECCCCe
Confidence 99885432 267888887765 43322100 0 0000 00112 2223 459998777789
Q ss_pred EEEEECCCCceeecccc-------c-c----CC------CCCc-EEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903 265 GAVYDVVANTWDDMREG-------M-V----RG------WRGP-VAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS 324 (387)
Q Consensus 265 i~~yD~~~~~W~~~~~~-------~-~----~~------~~~~-~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~ 324 (387)
+.+||+.++.-..+..+ + . .+ ...+ .++ ..+|.||+.+..++.|.+||+++.....+...
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 99999987653321100 0 0 00 1112 222 33578999998888999999998877665422
Q ss_pred c------------cccCceeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903 325 D------------LLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 325 ~------------~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
. ....+..++ .-+|+|||....++.|.++|..+.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 1 011233333 347899999777889999999865
No 69
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.04 E-value=0.08 Score=47.10 Aligned_cols=144 Identities=23% Similarity=0.219 Sum_probs=89.4
Q ss_pred eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC
Q 044903 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN 273 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~ 273 (387)
.++.+|.--|.-. .+.+..||+.+++ =....++|..-++ -..+.++++||.+.=....+.+||+.+
T Consensus 54 ~~g~LyESTG~yG------~S~l~~~d~~tg~----~~~~~~l~~~~Fg---EGit~~~d~l~qLTWk~~~~f~yd~~t- 119 (264)
T PF05096_consen 54 DDGTLYESTGLYG------QSSLRKVDLETGK----VLQSVPLPPRYFG---EGITILGDKLYQLTWKEGTGFVYDPNT- 119 (264)
T ss_dssp ETTEEEEEECSTT------EEEEEEEETTTSS----EEEEEE-TTT--E---EEEEEETTEEEEEESSSSEEEEEETTT-
T ss_pred CCCEEEEeCCCCC------cEEEEEEECCCCc----EEEEEECCccccc---eeEEEECCEEEEEEecCCeEEEEcccc-
Confidence 4678887766522 3578899999998 6666667766554 556788999999976667889999975
Q ss_pred ceeeccc--cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccc------ccCceeEEEeCCeEEEEec
Q 044903 274 TWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL------LKGARHAAAGGGRVCAVCE 345 (387)
Q Consensus 274 ~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~------~~~~~~~~~~~~~l~v~gg 345 (387)
.+.+.. -...|| .++..+..|++-+| +..++.+||++- +.+..... ...---+--++|+||.=--
T Consensus 120 -l~~~~~~~y~~EGW---GLt~dg~~Li~SDG-S~~L~~~dP~~f--~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW 192 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGW---GLTSDGKRLIMSDG-SSRLYFLDPETF--KEVRTIQVTDNGRPVSNLNELEYINGKIYANVW 192 (264)
T ss_dssp -TEEEEEEE-SSS-----EEEECSSCEEEE-S-SSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETTEEEEEET
T ss_pred -ceEEEEEecCCcce---EEEcCCCEEEEECC-ccceEEECCccc--ceEEEEEEEECCEECCCcEeEEEEcCEEEEEeC
Confidence 333331 123454 56666777777766 678999999753 33322211 1111234455788887555
Q ss_pred CCceEEEEEecCC
Q 044903 346 NGGGIVVVDVKAA 358 (387)
Q Consensus 346 ~~~~i~v~d~~~~ 358 (387)
....|..+|+.++
T Consensus 193 ~td~I~~Idp~tG 205 (264)
T PF05096_consen 193 QTDRIVRIDPETG 205 (264)
T ss_dssp TSSEEEEEETTT-
T ss_pred CCCeEEEEeCCCC
Confidence 6788888888865
No 70
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.94 E-value=0.41 Score=47.43 Aligned_cols=205 Identities=15% Similarity=0.177 Sum_probs=108.7
Q ss_pred eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCCc-----eeeeEEeeC-CEEEEEecCCCCCCCCC
Q 044903 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR-----RWCAAGYSR-GAVYVASGIGSQFSSDV 212 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~r-----~~~~~~~~~-~~iyv~GG~~~~~~~~~ 212 (387)
..++.++.+|+.... ..++.+|..|. .|+.-...+... .....+..+ ++||+...
T Consensus 56 sPvv~~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------- 118 (488)
T cd00216 56 TPLVVDGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------- 118 (488)
T ss_pred CCEEECCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------
Confidence 345668888886541 46788898876 487633222001 011223445 78887532
Q ss_pred CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEee--------eCCeEEEEECCCC--ceeeccc--
Q 044903 213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV--------KGAEGAVYDVVAN--TWDDMRE-- 280 (387)
Q Consensus 213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg--------~~~~i~~yD~~~~--~W~~~~~-- 280 (387)
...+..+|..|.+.. |+.-..-.......-....++.++.+|+-.. ....++++|.+++ .|+.--.
T Consensus 119 ~g~v~AlD~~TG~~~--W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~ 196 (488)
T cd00216 119 DGRLVALDAETGKQV--WKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEP 196 (488)
T ss_pred CCeEEEEECCCCCEe--eeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCC
Confidence 126788999988866 8865432210000001334566777776432 1246899999865 6874321
Q ss_pred -cc-cCC---------------CCCcEEEEeCCeEEEEeCCC-----------------CeEEEEeCCCC--ceEEcccc
Q 044903 281 -GM-VRG---------------WRGPVAAMDEEVLYGIDENS-----------------CTLSKYDEVMD--DWKEVVKS 324 (387)
Q Consensus 281 -~~-~~~---------------~~~~~~~~~~g~ly~~g~~~-----------------~~v~~yd~~~~--~W~~v~~~ 324 (387)
.. ... |..+++...++.+|+-.++. +.++.+|.++. .|+.-...
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~ 276 (488)
T cd00216 197 DPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP 276 (488)
T ss_pred CcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC
Confidence 00 000 11111112356777764321 36999998765 68753222
Q ss_pred ccc---cCc--eeEEE---eCCe---EEEEecCCceEEEEEecCCCCCceeEE
Q 044903 325 DLL---KGA--RHAAA---GGGR---VCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 325 ~~~---~~~--~~~~~---~~~~---l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
+.. ... ..+.. .++. +++++..++.++.+|..++ ...|+.
T Consensus 277 ~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG--~~~W~~ 327 (488)
T cd00216 277 HDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG--KLISAR 327 (488)
T ss_pred CCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC--cEeeEe
Confidence 111 111 11111 2333 4555556778999999854 456875
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00084 Score=59.82 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCC
Q 044903 42 LLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP 80 (387)
Q Consensus 42 ~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~ 80 (387)
.|-.|||||++.|++.|| +.++..|||||+++.++.+.+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 378999999999999999 777779999999999988764
No 72
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.052 Score=51.04 Aligned_cols=188 Identities=11% Similarity=0.037 Sum_probs=104.8
Q ss_pred EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCc---eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903 148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR---RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG 224 (387)
Q Consensus 148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~ 224 (387)
-+++.+|.+. .-.++..|-.+|. .+.++...+ ..+..+..|......+|... -++.||..+.
T Consensus 226 plllvaG~d~-----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk--------y~ysyDle~a 290 (514)
T KOG2055|consen 226 PLLLVAGLDG-----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK--------YLYSYDLETA 290 (514)
T ss_pred ceEEEecCCC-----cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccce--------EEEEeecccc
Confidence 4666667543 2345666777776 444433222 11222222333555555533 6799999998
Q ss_pred ccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEEe
Q 044903 225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGID 302 (387)
Q Consensus 225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g 302 (387)
+ -.++.++-...........|..++.+.++.|....|...-..++.|..--. +-... .+....+.+|++.+
T Consensus 291 k----~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~---~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 291 K----VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSD---FTFSSDSKELLASG 363 (514)
T ss_pred c----cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEee---EEEecCCcEEEEEc
Confidence 8 777764431111011133556677777776766677777778888853211 11111 11223334556555
Q ss_pred CCCCeEEEEeCCCCceEEcc-ccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 303 ENSCTLSKYDEVMDDWKEVV-KSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 303 ~~~~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
..|.|++||..++.-.... ......+...|...++..+.+|...+-+-+||-.+.
T Consensus 364 -~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 364 -GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred -CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 4679999999887322211 122334455566788888888767777888885543
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.80 E-value=0.3 Score=43.04 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=52.8
Q ss_pred CEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEeC-CeEEEEeCCCCeEEEEeCCCCceEEccccccccCc
Q 044903 253 GKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDE-EVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA 330 (387)
Q Consensus 253 g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~-g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~ 330 (387)
+.+++.++....+.+||+.+.+-. .+.. ... .-.++.... +.+++.+..++.+.+||..+.+- +.........
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~ 179 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETGKCLTTLRG-HTD--WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGHTGE 179 (289)
T ss_pred CCEEEEecCCCeEEEEECCCcEEEEEecc-CCC--cEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc--ceeEecCccc
Confidence 456666554678999998754322 2221 111 112333333 45555554588999999874422 1111122211
Q ss_pred -eeE-EEeCCeEEEEecCCceEEEEEecC
Q 044903 331 -RHA-AAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 331 -~~~-~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
..+ ..-+++.+++++.++.+.+||...
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 122 233444666666678899999874
No 74
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.79 E-value=0.33 Score=43.14 Aligned_cols=171 Identities=12% Similarity=0.097 Sum_probs=95.6
Q ss_pred EEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccccccee
Q 044903 168 IFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAID 247 (387)
Q Consensus 168 vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~ 247 (387)
..||.++.-+..+...-.-.+-.++.-++.+|+..=.++ .+-..|+.+.. =+.++ .|.... ....
T Consensus 172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn--------aiaridp~~~~----aev~p-~P~~~~--~gsR 236 (353)
T COG4257 172 RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN--------AIARIDPFAGH----AEVVP-QPNALK--AGSR 236 (353)
T ss_pred ecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc--------ceEEcccccCC----cceec-CCCccc--cccc
Confidence 456766655443322222234445566888887733222 23334444443 12222 222110 0011
Q ss_pred E--EEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903 248 A--VGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKS 324 (387)
Q Consensus 248 ~--v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~ 324 (387)
. +--.|++.+..-....++.|||...+|.+-+- +...-+..++-+. .+++++-+-..+.|.+||+++.+.++++..
T Consensus 237 riwsdpig~~wittwg~g~l~rfdPs~~sW~eypL-Pgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 237 RIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPL-PGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ccccCccCcEEEeccCCceeeEeCcccccceeeeC-CCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence 1 11235565553223678999999999998763 1112223344333 367888776778999999999999998876
Q ss_pred ccccCceeEEEeCCeEEEEecCCceEEEEE
Q 044903 325 DLLKGARHAAAGGGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d 354 (387)
....+...+-...|+++..-.+-..+.++.
T Consensus 316 r~n~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 316 RPNSGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred CCCCCceeccCCCCceeecccCcceeEEEE
Confidence 666666667777777777633334455443
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.78 E-value=0.081 Score=48.37 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=93.7
Q ss_pred CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEc-CCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC
Q 044903 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-GELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN 273 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~-~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~ 273 (387)
++.+.+.||.++ ...+++..++. |--. +.-.... .+.+..++|.+.+.|+....+.+++..++
T Consensus 75 ~~~l~aTGGgDD--------~AflW~~~~ge----~~~eltgHKDSV----t~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 75 NNNLVATGGGDD--------LAFLWDISTGE----FAGELTGHKDSV----TCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred CCceEEecCCCc--------eEEEEEccCCc----ceeEecCCCCce----EEEEEccCceEEEecCCCccEEEEEcccC
Confidence 567788888765 56888888887 6432 2111111 14455678888888888888888888765
Q ss_pred --ceeeccccccCCCC-CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceE
Q 044903 274 --TWDDMREGMVRGWR-GPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGI 350 (387)
Q Consensus 274 --~W~~~~~~~~~~~~-~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i 350 (387)
+|......-..-|- .+. .+.+++.|..+|.+|+|...+..-.++..-+.....++.+.-+||..+.|..++.+
T Consensus 139 ~~~~~~~~e~~dieWl~WHp----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHP----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred ceEEEeecccCceEEEEecc----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 78765321111121 111 24577788889999999998874444433333333455666778888887788899
Q ss_pred EEEEecCC
Q 044903 351 VVVDVKAA 358 (387)
Q Consensus 351 ~v~d~~~~ 358 (387)
.+||+.++
T Consensus 215 ~~Wn~ktg 222 (399)
T KOG0296|consen 215 IVWNPKTG 222 (399)
T ss_pred EEEecCCC
Confidence 99999876
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.76 E-value=0.063 Score=50.76 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=93.3
Q ss_pred ccEEEeCCCCceee-CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 165 RPLIFDPICRTWTF-GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 165 ~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
.+-.|+..+..-.+ +.... .-.+.+....+|++..+|+... .+.+||..+... -+.+..-. .+.
T Consensus 49 rvqly~~~~~~~~k~~srFk-~~v~s~~fR~DG~LlaaGD~sG--------~V~vfD~k~r~i---LR~~~ah~---apv 113 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRFK-DVVYSVDFRSDGRLLAAGDESG--------HVKVFDMKSRVI---LRQLYAHQ---APV 113 (487)
T ss_pred EEEEEecchhhhhhhHHhhc-cceeEEEeecCCeEEEccCCcC--------cEEEeccccHHH---HHHHhhcc---Cce
Confidence 45566665544333 11111 1112333344789999988654 688999555220 11111001 111
Q ss_pred cceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccc-cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcc
Q 044903 244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE-GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVV 322 (387)
Q Consensus 244 ~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~-~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~ 322 (387)
....-...++.+++.|+.+..+..+|..+..= .... +-..-.+.....-.++.|.+.|+.++.|..||..... ..+.
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~ 191 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVV 191 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeE
Confidence 11222346888999888877777777776652 2211 1111111222233456799999999999999998773 3322
Q ss_pred ccccccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 323 KSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 323 ~~~~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
+...... .-.++.-+|.+++. .+|+.+-|||+.++
T Consensus 192 elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLTTG 227 (487)
T ss_pred EecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEecCC
Confidence 3221111 11233444455555 45778888888854
No 77
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.71 E-value=0.44 Score=43.08 Aligned_cols=182 Identities=16% Similarity=0.041 Sum_probs=86.1
Q ss_pred EEEEEcCccCCCCCCCCccEEEeCCCCceee-CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCcc
Q 044903 148 KLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK 226 (387)
Q Consensus 148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~ 226 (387)
.+|+.++. .+.+.+||..+.+... ++....++ ..+....++.+|+.++.+ ..+.+||..+.+.
T Consensus 44 ~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~~ 107 (300)
T TIGR03866 44 LLYVCASD-------SDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDD--------NLVTVIDIETRKV 107 (300)
T ss_pred EEEEEECC-------CCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCC--------CeEEEEECCCCeE
Confidence 45666542 2467889998877654 33211221 111112234566665422 2688899887651
Q ss_pred ccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-CeEEEEECCCCceee-ccccccCCCCCcEEE-EeCCe-EEEEe
Q 044903 227 NSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDD-MREGMVRGWRGPVAA-MDEEV-LYGID 302 (387)
Q Consensus 227 ~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~-~~~g~-ly~~g 302 (387)
-..++ ..... ...+..-+|.+++++... ..+..||..+.+-.. +.. +.....++ ..+++ +++.+
T Consensus 108 ---~~~~~---~~~~~--~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 108 ---LAEIP---VGVEP--EGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----DQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred ---EeEee---CCCCc--ceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----CCCccEEEECCCCCEEEEEc
Confidence 12221 11000 011222356666665443 456677876653221 111 11111222 22444 44444
Q ss_pred CCCCeEEEEeCCCCceEE-ccc-ccc----ccCceeE-EEeCCe-EEEEecCCceEEEEEecC
Q 044903 303 ENSCTLSKYDEVMDDWKE-VVK-SDL----LKGARHA-AAGGGR-VCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 303 ~~~~~v~~yd~~~~~W~~-v~~-~~~----~~~~~~~-~~~~~~-l~v~gg~~~~i~v~d~~~ 357 (387)
..++.+.+||.++.+... +.. .+. ......+ +.-+++ +|+..+.+..+.+||..+
T Consensus 176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 457889999998764322 211 010 0011122 233444 455545556788888763
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.64 E-value=0.43 Score=42.05 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=81.4
Q ss_pred CccEEEeCCCCceee-CCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903 164 TRPLIFDPICRTWTF-GPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~ 241 (387)
..+.+||..+++-.. +.... ....+.... ++++++.++.+. .+.+||..+.+. -..+......
T Consensus 73 ~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~---~~~~~~~~~~-- 137 (289)
T cd00200 73 KTIRLWDLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDK--------TIKVWDVETGKC---LTTLRGHTDW-- 137 (289)
T ss_pred CeEEEEEcCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCCC--------eEEEEECCCcEE---EEEeccCCCc--
Confidence 467888887653221 11111 011112222 245666655322 678888875541 1222211111
Q ss_pred cccceeEEEEC-CEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCce
Q 044903 242 SREAIDAVGWK-GKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDW 318 (387)
Q Consensus 242 ~~~~~~~v~~~-g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W 318 (387)
........ +.+++.+.....+.+||..+.+ -..+.. ... .-.++... +++.+++++.++.+.+||..+..-
T Consensus 138 ---i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG--HTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred ---EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec--Ccc-ccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 02222222 4554444435788999987442 122211 110 11223332 343555555688999999976433
Q ss_pred EEcccccccc-CceeEEEe-CCeEEEEecCCceEEEEEecC
Q 044903 319 KEVVKSDLLK-GARHAAAG-GGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 319 ~~v~~~~~~~-~~~~~~~~-~~~l~v~gg~~~~i~v~d~~~ 357 (387)
.. ...... ....+... ++.+++.++.++.+.+||...
T Consensus 212 ~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 212 LG--TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ec--chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 22 221111 12223333 356666655588899999884
No 79
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.63 E-value=0.59 Score=43.53 Aligned_cols=179 Identities=12% Similarity=0.006 Sum_probs=88.2
Q ss_pred CccEEEeCCC-CceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCC-CCccccCeEEcCCCCCC
Q 044903 164 TRPLIFDPIC-RTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDG 239 (387)
Q Consensus 164 ~~~~vydp~t-~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~-t~~~~~~W~~~~~~~~~ 239 (387)
..+.+||..+ .+++.+...+........+. -+..+|+.+... ..+.+|+.. +++ +..+...+.+
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~--------~~i~~~~~~~~g~----l~~~~~~~~~ 79 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE--------FRVLSYRIADDGA----LTFAAESPLP 79 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC--------CcEEEEEECCCCc----eEEeeeecCC
Confidence 4567777754 45655443332211111121 234567754321 356677765 445 6555433322
Q ss_pred cccccceeEEEECCE-EEEEeeeCCeEEEEECCCC-ce-eeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCC
Q 044903 240 RFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVAN-TW-DDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEV 314 (387)
Q Consensus 240 ~~~~~~~~~v~~~g~-lyv~gg~~~~i~~yD~~~~-~W-~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~ 314 (387)
... .+.+..-+|+ +|+.+.....+.+||++++ .- +.+.. .......+.+++. ++.+|+.....+.|.+||.+
T Consensus 80 ~~p--~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 80 GSP--THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CCc--eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 111 1222222454 6666544578889988643 11 11211 1111112233332 34677777667889999997
Q ss_pred CC-ceEEcc----ccccccCceeEEE-e-CCeEEEEecCCceEEEEEecC
Q 044903 315 MD-DWKEVV----KSDLLKGARHAAA-G-GGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 315 ~~-~W~~v~----~~~~~~~~~~~~~-~-~~~l~v~gg~~~~i~v~d~~~ 357 (387)
++ ...... ..+...+...++. - +..+|+....++.+.+||+..
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 63 222110 1111222333333 2 346778866688999999873
No 80
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.63 E-value=0.37 Score=45.39 Aligned_cols=230 Identities=19% Similarity=0.188 Sum_probs=119.0
Q ss_pred CCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEE--EeCCCCc
Q 044903 98 TPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLI--FDPICRT 175 (387)
Q Consensus 98 ~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v--ydp~t~~ 175 (387)
..+..+.||..+.++..+...... .+|+| ......++.||+..... .....+.. .+..+.+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~-------~~Ps~------l~~~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEG-------ENPSW------LAVSPDGRRLYVVNEGS----GDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEES-------SSECC------EEE-TTSSEEEEEETTS----STTTEEEEEEEETTTTE
T ss_pred CcEEEEEEcCCCCCceEeeeecCC-------CCCce------EEEEeCCCEEEEEEccc----cCCCCEEEEEECCCcce
Confidence 456677788899888766542221 11222 12222456788875432 12244544 4555567
Q ss_pred eeeCCCCC-CCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEc---------CCCCCCcccc
Q 044903 176 WTFGPELV-TPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT---------GELKDGRFSR 243 (387)
Q Consensus 176 W~~l~~~~-~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~---------~~~~~~~~~~ 243 (387)
.+.+...+ ....-+..+. -+..+||+.-.+ ..+.+|+...+-. =... .+-+......
T Consensus 76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~--------g~v~v~~l~~~g~---l~~~~~~~~~~g~g~~~~rq~~~ 144 (345)
T PF10282_consen 76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG--------GSVSVFPLDDDGS---LGEVVQTVRHEGSGPNPDRQEGP 144 (345)
T ss_dssp EEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTSE---EEEEEEEEESEEEESSTTTTSST
T ss_pred eEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--------CeEEEEEccCCcc---cceeeeecccCCCCCcccccccc
Confidence 77766555 2332222332 245677764222 2567777665320 1111 0111111222
Q ss_pred cceeEEEE-CC-EEEEEeeeCCeEEEEECCCCc--eeecccc-ccCCCCCc-EEEEe--CCeEEEEeCCCCeEEEEeCC-
Q 044903 244 EAIDAVGW-KG-KLCLVNVKGAEGAVYDVVANT--WDDMREG-MVRGWRGP-VAAMD--EEVLYGIDENSCTLSKYDEV- 314 (387)
Q Consensus 244 ~~~~~v~~-~g-~lyv~gg~~~~i~~yD~~~~~--W~~~~~~-~~~~~~~~-~~~~~--~g~ly~~g~~~~~v~~yd~~- 314 (387)
..|.+..- +| .+|+..-....+.+|+...+. ....... .+.+. ++ .+++. +..+|++...++.|.+|+..
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 33544444 34 466654333789999887665 5443211 22222 23 33332 35799999888888887665
Q ss_pred -CCceEEcccc---cc-cc---CceeEEEe--CCeEEEEecCCceEEEEEec
Q 044903 315 -MDDWKEVVKS---DL-LK---GARHAAAG--GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 315 -~~~W~~v~~~---~~-~~---~~~~~~~~--~~~l~v~gg~~~~i~v~d~~ 356 (387)
+..++.+... |. .. ....++.. +..|||...+.+.|.+|++.
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 6677776532 22 11 12333333 45688887778899999995
No 81
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.58 E-value=0.64 Score=43.31 Aligned_cols=181 Identities=14% Similarity=0.035 Sum_probs=86.3
Q ss_pred CccEEEeCC-CCceeeCCCCCCCce-eeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903 164 TRPLIFDPI-CRTWTFGPELVTPRR-WCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 164 ~~~~vydp~-t~~W~~l~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~ 240 (387)
..+.+|+.. +.+++.+...+.+.. .+.+.. -+..+|+..-. ...+.+||..++... ...+...+...
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~--------~~~v~v~~~~~~g~~--~~~~~~~~~~~ 126 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN--------ANCVSVSPLDKDGIP--VAPIQIIEGLE 126 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC--------CCeEEEEEECCCCCC--CCceeeccCCC
Confidence 556667665 455655433332211 122222 23457776422 236777887643200 12222111111
Q ss_pred ccccceeEEEE-CC-EEEEEeeeCCeEEEEECCCC-ceeecc---ccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEe
Q 044903 241 FSREAIDAVGW-KG-KLCLVNVKGAEGAVYDVVAN-TWDDMR---EGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYD 312 (387)
Q Consensus 241 ~~~~~~~~v~~-~g-~lyv~gg~~~~i~~yD~~~~-~W~~~~---~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd 312 (387)
..+.++.. +| .+|+.+.....+.+||..++ .-.... ...+.+.....+++. +..+|+....++.|.+||
T Consensus 127 ---~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 127 ---GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred ---cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence 11333232 44 56666555588999998763 222110 001112111223332 346888876678899998
Q ss_pred CC--CCceEEccc---ccc----ccCceeEE-EeCC-eEEEEecCCceEEEEEecC
Q 044903 313 EV--MDDWKEVVK---SDL----LKGARHAA-AGGG-RVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 313 ~~--~~~W~~v~~---~~~----~~~~~~~~-~~~~-~l~v~gg~~~~i~v~d~~~ 357 (387)
.+ +.+.+.+.. .|. .+....+. .-+| .+|+.....+.|.+||+..
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 76 345554432 221 11111122 2244 5777655567888898863
No 82
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.55 E-value=0.91 Score=49.33 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=105.2
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC----------CCc--eeeeEEee--CCEEEEEecCCCCCCC
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV----------TPR--RWCAAGYS--RGAVYVASGIGSQFSS 210 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~----------~~r--~~~~~~~~--~~~iyv~GG~~~~~~~ 210 (387)
.++.+||..- ..+.+.++|+..+.=..+.... ..+ .-+..++. ++.|||+-..+
T Consensus 578 ~~g~lyVaDs-------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n----- 645 (1057)
T PLN02919 578 LNNRLFISDS-------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN----- 645 (1057)
T ss_pred CCCeEEEEEC-------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----
Confidence 4678888753 2357888888655332332210 001 01223332 46789985432
Q ss_pred CCCceEEEEeCCCCccccCeEEcCCCC-------CC-----cccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCcee
Q 044903 211 DVAKSVEKWDLMNGEKNSRWEKTGELK-------DG-----RFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWD 276 (387)
Q Consensus 211 ~~~~~v~vyd~~t~~~~~~W~~~~~~~-------~~-----~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~ 276 (387)
..+.++|+.++. =+.+..-. .. .........++- ++.+|+.....+.+.+||+.++...
T Consensus 646 ---~~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 646 ---HALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR 718 (1057)
T ss_pred ---ceEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 256778877665 43332100 00 000001222222 6789988766678999999877654
Q ss_pred eccc-cc----------cCCCCCc-EEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcc-ccc----------------
Q 044903 277 DMRE-GM----------VRGWRGP-VAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVV-KSD---------------- 325 (387)
Q Consensus 277 ~~~~-~~----------~~~~~~~-~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~-~~~---------------- 325 (387)
.+.. +. ......+ .+++. ++.||+.+..++.|.+||+++..-+.+. ..+
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 3321 00 0001112 23322 3469999888889999999876533221 000
Q ss_pred ---cccCceeE-EEeCCeEEEEecCCceEEEEEecCC
Q 044903 326 ---LLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 326 ---~~~~~~~~-~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
....+.++ +.-+|.|||....++.|.++|+.+.
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 01122333 3456789999878899999998744
No 83
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.53 E-value=0.53 Score=41.84 Aligned_cols=218 Identities=17% Similarity=0.123 Sum_probs=123.5
Q ss_pred EEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEE-eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCC
Q 044903 103 FTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE 181 (387)
Q Consensus 103 ~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~ 181 (387)
-.+||.+++-...|.-.. ...|.+++ -++..++.-+. ..+..+|++|...++.+-
T Consensus 86 GhLdP~tGev~~ypLg~G----------------a~Phgiv~gpdg~~Witd~~--------~aI~R~dpkt~evt~f~l 141 (353)
T COG4257 86 GHLDPATGEVETYPLGSG----------------ASPHGIVVGPDGSAWITDTG--------LAIGRLDPKTLEVTRFPL 141 (353)
T ss_pred eecCCCCCceEEEecCCC----------------CCCceEEECCCCCeeEecCc--------ceeEEecCcccceEEeec
Confidence 347888877666654333 11244444 46677776442 256888999888777531
Q ss_pred -CCCCceeeeEEeeC--CEEEEEecCCCCC-CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEE
Q 044903 182 -LVTPRRWCAAGYSR--GAVYVASGIGSQF-SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCL 257 (387)
Q Consensus 182 -~~~~r~~~~~~~~~--~~iyv~GG~~~~~-~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv 257 (387)
...+-......+.+ +.++..|-.+... -....+.+++|+.-.+. .. ...++.-+|.+|+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------gp----yGi~atpdGsvwy 204 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------GP----YGICATPDGSVWY 204 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-------------CC----cceEECCCCcEEE
Confidence 11222333444443 5787776543310 01123344444332111 11 1234456899998
Q ss_pred EeeeCCeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE-
Q 044903 258 VNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA- 334 (387)
Q Consensus 258 ~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~- 334 (387)
..-.++.|...|+.+..=+.++. ....+.+...+- .-|++++.....+.+.+||+.+..|.+-.-+........+.
T Consensus 205 aslagnaiaridp~~~~aev~p~P~~~~~gsRriwsd-pig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV 283 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSD-PIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV 283 (353)
T ss_pred EeccccceEEcccccCCcceecCCCcccccccccccC-ccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee
Confidence 87667788888888775555542 223333322222 23678888766789999999999999976443333333333
Q ss_pred EeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 335 AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 335 ~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
--.|++++---..+.|.-+|+.+. .+++
T Consensus 284 D~~grVW~sea~agai~rfdpeta----~ftv 311 (353)
T COG4257 284 DRHGRVWLSEADAGAIGRFDPETA----RFTV 311 (353)
T ss_pred ccCCcEEeeccccCceeecCcccc----eEEE
Confidence 334666664334566777787765 5666
No 84
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=96.49 E-value=0.063 Score=42.65 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=54.2
Q ss_pred EEECCEEEEEeee----CCeEEEEECCCCceeecccc--ccCCCCCcEEEEeCCeEEEEeCCC----C--eEEEE-eCCC
Q 044903 249 VGWKGKLCLVNVK----GAEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENS----C--TLSKY-DEVM 315 (387)
Q Consensus 249 v~~~g~lyv~gg~----~~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~~----~--~v~~y-d~~~ 315 (387)
+.+||.+|.+... ...+.+||+++++|+.++.. .........++..+|+|-++.... . +||+. |.++
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 5789999988765 27899999999999988752 233344667888899998886432 2 24444 6778
Q ss_pred CceEEcc
Q 044903 316 DDWKEVV 322 (387)
Q Consensus 316 ~~W~~v~ 322 (387)
.+|++..
T Consensus 82 ~~Wsk~~ 88 (129)
T PF08268_consen 82 QEWSKKH 88 (129)
T ss_pred ceEEEEE
Confidence 8999864
No 85
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.48 E-value=0.064 Score=48.75 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=75.7
Q ss_pred eeEEEECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903 246 IDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS 324 (387)
Q Consensus 246 ~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~ 324 (387)
.-.|-++.+ |++...+ ..+.+++..+......-.+- .++.+...+.|++.+-|..+.+|..||.+...--.+ +
T Consensus 323 VNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~gH---kRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRv--L 396 (499)
T KOG0281|consen 323 VNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGH---KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--L 396 (499)
T ss_pred eeeeccccc-eEEEecCCceEEEEeccceeeehhhhcc---cccceehhccCeEEEecCCCceEEEEeccccHHHHH--H
Confidence 334557788 6665444 67888888777665443222 234555677899999988889999999987643222 2
Q ss_pred ccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCC
Q 044903 325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAP 361 (387)
Q Consensus 325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~ 361 (387)
........++..+++=.|-|+.++.|-|||..++..+
T Consensus 397 eGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 397 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hchHHhhhheeecCceeeeccccceEEEEecccccCC
Confidence 2233345678889999999888999999999876444
No 86
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.37 E-value=0.068 Score=47.54 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=69.4
Q ss_pred ECCEEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903 251 WKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 251 ~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~ 328 (387)
.+|.||--.|.. ..+..||+++++=..... ++....+-.+++.+++||.+.-.++..++||.++ .+.+...+-..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~ 130 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-LPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG 130 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEETTEEEEEESSSSEEEEEETTT--TEEEEEEE-SS
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-CCccccceeEEEECCEEEEEEecCCeEEEEcccc--ceEEEEEecCC
Confidence 578999776544 789999999987543333 4555566778888999999998889999999975 56666554444
Q ss_pred CceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903 329 GARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
...+++.. |+-+++..++..++.+|+.+
T Consensus 131 EGWGLt~d-g~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 131 EGWGLTSD-GKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp S--EEEEC-SSCEEEE-SSSEEEEE-TTT
T ss_pred cceEEEcC-CCEEEEECCccceEEECCcc
Confidence 45556644 44455546678889999874
No 87
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.34 E-value=0.43 Score=43.31 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=69.8
Q ss_pred EEEEecCCCCCCCC-CCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEEeeeC------CeEEEEE
Q 044903 198 VYVASGIGSQFSSD-VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG------AEGAVYD 269 (387)
Q Consensus 198 iyv~GG~~~~~~~~-~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~gg~~------~~i~~yD 269 (387)
|||.|-... .+. .+..+..||..+.+ |.....=-.+ .-...... +++||+.|-.. ..+..||
T Consensus 1 v~VGG~F~~--aGsL~C~~lC~yd~~~~q----W~~~g~~i~G----~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 1 VYVGGSFTS--AGSLPCPGLCLYDTDNSQ----WSSPGNGISG----TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred CEEeeecCC--CCCcCCCEEEEEECCCCE----eecCCCCceE----EEEEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence 355555544 222 47789999999999 9998743211 11233333 67888876533 6788999
Q ss_pred CCCCceeeccccccCCCCCcE--EEE---eCCeEEEEeC-CCC--eEEEEeCCCCceEEccc
Q 044903 270 VVANTWDDMREGMVRGWRGPV--AAM---DEEVLYGIDE-NSC--TLSKYDEVMDDWKEVVK 323 (387)
Q Consensus 270 ~~~~~W~~~~~~~~~~~~~~~--~~~---~~g~ly~~g~-~~~--~v~~yd~~~~~W~~v~~ 323 (387)
.++++|..++........++. ..+ ....+++-|. ..+ .+..| +..+|..+..
T Consensus 71 ~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 71 FKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 999999988763312222332 222 2345776664 223 36667 4568999876
No 88
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.29 E-value=1 Score=42.36 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=39.2
Q ss_pred eCCeEEEEe-C--------CCCeEEEEeCCCCceEEccccccccCceeEE-EeC-C-eEEEEecCCceEEEEEecCC
Q 044903 294 DEEVLYGID-E--------NSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGG-G-RVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 294 ~~g~ly~~g-~--------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~-~-~l~v~gg~~~~i~v~d~~~~ 358 (387)
.++++|+.. + ..+.|+++|.++. +.+...+.......++ .-+ . .+|+..+.++.+.++|..+.
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCC--eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 367899842 2 1257999998655 4554444434443333 334 4 56667666788999999854
No 89
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.12 E-value=0.21 Score=47.15 Aligned_cols=114 Identities=9% Similarity=0.068 Sum_probs=73.1
Q ss_pred CCE-EEEEeeeCCeEEEEECCCCceeecccc--ccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903 252 KGK-LCLVNVKGAEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 252 ~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~ 328 (387)
+|. ..+.+|....+++||+++.+-+.+... +.......--+..++...++.|..|.|.+...+++.|..-..++...
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v 347 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVV 347 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEE
Confidence 555 666677777899999999888877632 22111122233445666677778899999999999887644444333
Q ss_pred CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
..++.. .+++.+++.++.+.++++|+...---..|..
T Consensus 348 ~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 348 SDFTFS-SDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred eeEEEe-cCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 334333 4555555556666999999996522355664
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.09 E-value=0.13 Score=48.78 Aligned_cols=121 Identities=11% Similarity=0.062 Sum_probs=75.0
Q ss_pred ECCEEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc-
Q 044903 251 WKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK- 328 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~- 328 (387)
-||+|...|+....+.+||..+. .-+.+... ........-...++.+++.+++++.+..||..+..- +.....+.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htD 154 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTD 154 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhc-cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcc
Confidence 47999999988889999995542 11121110 000001111235788999988778888889988762 21222222
Q ss_pred --CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCceeeEE
Q 044903 329 --GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSV 377 (387)
Q Consensus 329 --~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~~~~~~ 377 (387)
....+...++.|++.||.++.|-+||.... +.|....-.|.-+=.|
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~---~~~v~elnhg~pVe~v 202 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSL---TSRVVELNHGCPVESV 202 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccC---CceeEEecCCCceeeE
Confidence 233455667889999999999999999965 3566544444433333
No 91
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.08 E-value=1 Score=42.39 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=80.9
Q ss_pred CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC--CCCCCcccccceeEEEEC-CEEEEEeeeCCeEEEEECC-
Q 044903 196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGWK-GKLCLVNVKGAEGAVYDVV- 271 (387)
Q Consensus 196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~--~~~~~~~~~~~~~~v~~~-g~lyv~gg~~~~i~~yD~~- 271 (387)
..+||..- ..+.+.+|+...+... ..... .++...-+ + |.+..-+ ..+|+++...+.+.+|+..
T Consensus 156 ~~v~v~dl--------G~D~v~~~~~~~~~~~--l~~~~~~~~~~G~GP-R-h~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 156 RFVYVPDL--------GADRVYVYDIDDDTGK--LTPVDSIKVPPGSGP-R-HLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp SEEEEEET--------TTTEEEEEEE-TTS-T--EEEEEEEECSTTSSE-E-EEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CEEEEEec--------CCCEEEEEEEeCCCce--EEEeeccccccCCCC-c-EEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 46777632 1347788877665411 33322 22222111 1 3233324 3689998777788888776
Q ss_pred -CCceeeccc--cccCCCC----CcEEEEe--CCeEEEEeCCCCeEEEEeC--CCCceEEccccccc-cCc--eeEEEeC
Q 044903 272 -ANTWDDMRE--GMVRGWR----GPVAAMD--EEVLYGIDENSCTLSKYDE--VMDDWKEVVKSDLL-KGA--RHAAAGG 337 (387)
Q Consensus 272 -~~~W~~~~~--~~~~~~~----~~~~~~~--~g~ly~~g~~~~~v~~yd~--~~~~W~~v~~~~~~-~~~--~~~~~~~ 337 (387)
+..++.+.. ..+.+.. ...+++. +..||+-....+.|.+|+. ++.+.+.+...+.. ..+ +.+...+
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG 303 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence 556655441 1222221 2233333 4568887766678888876 45567766654431 112 3333356
Q ss_pred CeEEEEecCCceEEEEEec
Q 044903 338 GRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 338 ~~l~v~gg~~~~i~v~d~~ 356 (387)
..|||.+..++.|.+|+++
T Consensus 304 ~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEe
Confidence 6677777778899999876
No 92
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.07 E-value=0.54 Score=43.71 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=81.7
Q ss_pred ceEEEEeCCCC-----ccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCC
Q 044903 214 KSVEKWDLMNG-----EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWR 287 (387)
Q Consensus 214 ~~v~vyd~~t~-----~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~ 287 (387)
..+.+|+.... + .+.+....... ...+.+.++|++.+. .+..+.+|+...+. +..... ......
T Consensus 62 Gri~v~~i~~~~~~~~~----l~~i~~~~~~g---~V~ai~~~~~~lv~~--~g~~l~v~~l~~~~~l~~~~~-~~~~~~ 131 (321)
T PF03178_consen 62 GRILVFEISESPENNFK----LKLIHSTEVKG---PVTAICSFNGRLVVA--VGNKLYVYDLDNSKTLLKKAF-YDSPFY 131 (321)
T ss_dssp EEEEEEEECSS-----E----EEEEEEEEESS----EEEEEEETTEEEEE--ETTEEEEEEEETTSSEEEEEE-E-BSSS
T ss_pred cEEEEEEEEcccccceE----EEEEEEEeecC---cceEhhhhCCEEEEe--ecCEEEEEEccCcccchhhhe-ecceEE
Confidence 56888988884 4 55554332211 125566778885443 33689999998887 776653 223334
Q ss_pred CcEEEEeCCeEEEEeCCCC-eEEEEeCCCCceEEccccccccCceeEEEe-CCeEEEEecCCceEEEEEec
Q 044903 288 GPVAAMDEEVLYGIDENSC-TLSKYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 288 ~~~~~~~~g~ly~~g~~~~-~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~~~l~v~gg~~~~i~v~d~~ 356 (387)
..++.+.++.|++-+...+ .++.|+.+..+-..+..........++..+ ++..++++-..+++.++...
T Consensus 132 i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 132 ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 5567778887776654333 467788877778887765554444445555 55666665567888777665
No 93
>PTZ00421 coronin; Provisional
Probab=96.00 E-value=1.8 Score=42.80 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=72.9
Q ss_pred CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCce
Q 044903 196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW 275 (387)
Q Consensus 196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W 275 (387)
+.+++.||.+. .+.+||..+.+. -..+....... ...+..-+|.+.+.++.+..+.+||+.+++=
T Consensus 138 ~~iLaSgs~Dg--------tVrIWDl~tg~~---~~~l~~h~~~V----~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGADM--------VVNVWDVERGKA---VEVIKCHSDQI----TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCCC--------EEEEEECCCCeE---EEEEcCCCCce----EEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 35666766544 688999887761 12222111111 0112223677777777778899999987642
Q ss_pred -eeccccccCCCCCcEEE-Ee-CCeEEEEeC---CCCeEEEEeCCCCceEEccccc-cccCce--eEEEeCCeEEEEec-
Q 044903 276 -DDMREGMVRGWRGPVAA-MD-EEVLYGIDE---NSCTLSKYDEVMDDWKEVVKSD-LLKGAR--HAAAGGGRVCAVCE- 345 (387)
Q Consensus 276 -~~~~~~~~~~~~~~~~~-~~-~g~ly~~g~---~~~~v~~yd~~~~~W~~v~~~~-~~~~~~--~~~~~~~~l~v~gg- 345 (387)
..+.. ..+.....++ .. ++.+...|. .++.|.+||..+..-. +.... ...... .....++.++++||
T Consensus 203 v~tl~~--H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 203 VSSVEA--HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred EEEEec--CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 12211 1110001111 12 234444442 3568999998643211 11000 011111 12233566666666
Q ss_pred CCceEEEEEecCC
Q 044903 346 NGGGIVVVDVKAA 358 (387)
Q Consensus 346 ~~~~i~v~d~~~~ 358 (387)
+++.|.+||+.++
T Consensus 280 gDg~Iriwdl~~~ 292 (493)
T PTZ00421 280 GEGNIRCFELMNE 292 (493)
T ss_pred CCCeEEEEEeeCC
Confidence 4778999999854
No 94
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.97 E-value=1.2 Score=47.21 Aligned_cols=171 Identities=12% Similarity=0.034 Sum_probs=90.6
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~ 241 (387)
..+.+||..+++-...-..... .-.+.+. .++.+++.||.+. .+.+||..+... ...+.. ..
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~~~~---~~~~~~-~~--- 618 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEK-RVWSIDYSSADPTLLASGSDDG--------SVKLWSINQGVS---IGTIKT-KA--- 618 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCC-CEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCCCcE---EEEEec-CC---
Confidence 3567788876543221111111 1112222 2456777777644 678888876541 222211 10
Q ss_pred cccceeEEEE---CCEEEEEeeeCCeEEEEECCCCc--eeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 242 SREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 242 ~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
....+.+ +|.+++.|+.+..+.+||..+.. ...+.. ..-.-..+...++..++.++.++.|.+||..+.
T Consensus 619 ---~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 619 ---NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred ---CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 0112222 46777777777899999987542 222211 000112233345666667777889999998643
Q ss_pred ----ceEEccccccccC--ceeEEEeCCeEEEEecCCceEEEEEec
Q 044903 317 ----DWKEVVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 317 ----~W~~v~~~~~~~~--~~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
.|..+........ .......++.+++.|+.++.+.+||..
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 2433332222222 122334467777887778899999876
No 95
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.73 E-value=1.2 Score=38.62 Aligned_cols=211 Identities=9% Similarity=0.027 Sum_probs=115.2
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCC--EEEEEecCCCCCCCCCCceEEEEeCC
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRG--AVYVASGIGSQFSSDVAKSVEKWDLM 222 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~vyd~~ 222 (387)
.++.-++.+|.+ ..+.+||..|.+--+-= ...-+...++..+. .+.+-|+.+. ++.+||..
T Consensus 69 ~Dnskf~s~GgD-------k~v~vwDV~TGkv~Rr~--rgH~aqVNtV~fNeesSVv~SgsfD~--------s~r~wDCR 131 (307)
T KOG0316|consen 69 SDNSKFASCGGD-------KAVQVWDVNTGKVDRRF--RGHLAQVNTVRFNEESSVVASGSFDS--------SVRLWDCR 131 (307)
T ss_pred ccccccccCCCC-------ceEEEEEcccCeeeeec--ccccceeeEEEecCcceEEEeccccc--------eeEEEEcc
Confidence 455555555432 46789999998643310 00001112233332 4555555544 78889988
Q ss_pred CCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEE
Q 044903 223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGI 301 (387)
Q Consensus 223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~ 301 (387)
++. -+.+.-+.+. .+...++.+.+...+.|..+..+-.||...++-..-- +..+. .++. ..++..-+.
T Consensus 132 S~s----~ePiQildea---~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pi--t~vs~s~d~nc~La 200 (307)
T KOG0316|consen 132 SRS----FEPIQILDEA---KDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPI--TSVSFSKDGNCSLA 200 (307)
T ss_pred cCC----CCccchhhhh---cCceeEEEecccEEEeeccCCcEEEEEeecceeehhh--cCCcc--eeEEecCCCCEEEE
Confidence 888 6666544433 3557778888888777776678899998766433211 11111 1222 234555666
Q ss_pred eCCCCeEEEEeCCCCceEEc-cccccccCceeEEEeCCeEEEEec-CCceEEEEEecCCCCCceeEEcCCCCceeeEEEe
Q 044903 302 DENSCTLSKYDEVMDDWKEV-VKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHI 379 (387)
Q Consensus 302 g~~~~~v~~yd~~~~~W~~v-~~~~~~~~~~~~~~~~~~l~v~gg-~~~~i~v~d~~~~~~~~~W~~~~~~~~~~~~~~~ 379 (387)
+..++.+...|-++.+--.. ..........-+......-.|++| .++.+++||..+. -..=..+.+.+..+..+.-
T Consensus 201 ~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--~~~sk~~~~~~v~v~dl~~ 278 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--TQISKLSVVSTVIVTDLSC 278 (307)
T ss_pred eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc--eeeeeeccCCceeEEeeec
Confidence 65667788888777632111 111111112223333334445544 5788999999854 1111236667766667766
Q ss_pred cccccC
Q 044903 380 LPRMSK 385 (387)
Q Consensus 380 ~~~~~~ 385 (387)
-|+|..
T Consensus 279 hp~~~~ 284 (307)
T KOG0316|consen 279 HPTMDD 284 (307)
T ss_pred ccCccc
Confidence 677754
No 96
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.17 E-value=0.44 Score=43.26 Aligned_cols=107 Identities=12% Similarity=0.232 Sum_probs=65.3
Q ss_pred CCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCC----
Q 044903 162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL---- 236 (387)
Q Consensus 162 ~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~---- 236 (387)
....+..||..+.+|..+..--..- -.+... -++++|+.|-... .......+..||..+.+ |..++.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~--~~~~~~~la~yd~~~~~----w~~~~~~~s~~ 86 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTL--NGTNSSNLATYDFKNQT----WSSLGGGSSNS 86 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEE--CCCCceeEEEEecCCCe----eeecCCccccc
Confidence 4567889999999999976432111 112222 3678888886644 22245678999999999 9988762
Q ss_pred -CCCcccccceeEEEECC-EEEEEeeeC---CeEEEEECCCCceeeccc
Q 044903 237 -KDGRFSREAIDAVGWKG-KLCLVNVKG---AEGAVYDVVANTWDDMRE 280 (387)
Q Consensus 237 -~~~~~~~~~~~~v~~~g-~lyv~gg~~---~~i~~yD~~~~~W~~~~~ 280 (387)
|.+.. .......++ .+++.|... ..+..|| -.+|..+..
T Consensus 87 ipgpv~---a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPVT---ALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCCcEE---EEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 22210 011111233 466655433 5577774 568998875
No 97
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.13 E-value=0.005 Score=55.16 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=37.2
Q ss_pred CCCCChHHHHHHHhhhcC--------hhhHHHhhHhhhhhccCCCCCCcceE
Q 044903 42 LLPGLPDHIAHLCLSHVH--------PSILHNVCHSWRRLIYSPSFPPFLSL 85 (387)
Q Consensus 42 ~~~~LP~dl~~~iL~rLP--------~~~~r~Vck~W~~li~s~~f~~~~~l 85 (387)
.|..|||||+.+||.++= +.++.+|||.|...+.+|+|++..|+
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 356899999999997653 77889999999999999999765444
No 98
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.07 E-value=0.9 Score=40.53 Aligned_cols=79 Identities=13% Similarity=0.009 Sum_probs=48.0
Q ss_pred CCCCCCCceeeeEEeeC--C--EEEEEecCCCCC---------C--CCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 179 GPELVTPRRWCAAGYSR--G--AVYVASGIGSQF---------S--SDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 179 l~~~~~~r~~~~~~~~~--~--~iyv~GG~~~~~---------~--~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
+.+.|.+|..|+..++. | ...++||....- + .+-...|...|++-+. .+. -.+|+-.-+.
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC----~ta-h~lpEl~dG~ 155 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGC----CTA-HTLPELQDGQ 155 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccc----ccc-ccchhhcCCe
Confidence 57889999887776662 2 356677753210 0 0123355666777664 332 2244333334
Q ss_pred cceeEEEECCEEEEEeeeC
Q 044903 244 EAIDAVGWKGKLCLVNVKG 262 (387)
Q Consensus 244 ~~~~~v~~~g~lyv~gg~~ 262 (387)
..|.+.+-++.+|++||+.
T Consensus 156 SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 156 SFHVSLARNDCVYILGGHS 174 (337)
T ss_pred EEEEEEecCceEEEEccEE
Confidence 4588888899999999964
No 99
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.04 E-value=3.6 Score=39.88 Aligned_cols=176 Identities=10% Similarity=0.006 Sum_probs=96.0
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|..+++-+.+...+..-.......-+.+|++....+. ...++++|..+++ .+.+..-+...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~--- 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQ----LSRVTNHPAID--- 289 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCC----eEEcccCCCCc---
Confidence 4689999999988887654421111112222345654432211 2478899999988 87776432111
Q ss_pred cceeEEEECC-EEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903 244 EAIDAVGWKG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W 318 (387)
......-+| +|++..... ..++.+|..+++++.+..... ....+.....++.|++.....+ .|+.+|+++...
T Consensus 290 -~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~-~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 290 -TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN-YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred -CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 111222244 455553322 578888988888876642111 1111222234556666654333 589999999888
Q ss_pred EEccccccccCceeEEEeCCeEEEEecC---CceEEEEEec
Q 044903 319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVK 356 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~---~~~i~v~d~~ 356 (387)
+.+....... .....-+|+.+++... ...++++|..
T Consensus 368 ~~lt~~~~~~--~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 368 RILTDTSLDE--SPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEccCCCCCC--CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7765432211 1234456666665442 2457777776
No 100
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.04 E-value=0.22 Score=39.50 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=51.6
Q ss_pred EeCCeEEEEeCC----CCeEEEEeCCCCceEEcccc--c-cccCceeEEEeCCeEEEEecCC------ceEEEEEecCCC
Q 044903 293 MDEEVLYGIDEN----SCTLSKYDEVMDDWKEVVKS--D-LLKGARHAAAGGGRVCAVCENG------GGIVVVDVKAAA 359 (387)
Q Consensus 293 ~~~g~ly~~g~~----~~~v~~yd~~~~~W~~v~~~--~-~~~~~~~~~~~~~~l~v~gg~~------~~i~v~d~~~~~ 359 (387)
..+|.||.+... ...|.+||.++++|+.+..+ + .......++.++|+|.++.... -.+++++...+
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k- 81 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK- 81 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc-
Confidence 457889988743 34699999999999988764 2 2334578999999999986542 46788864433
Q ss_pred CCceeEE
Q 044903 360 APTIFVV 366 (387)
Q Consensus 360 ~~~~W~~ 366 (387)
++|..
T Consensus 82 --~~Wsk 86 (129)
T PF08268_consen 82 --QEWSK 86 (129)
T ss_pred --ceEEE
Confidence 57884
No 101
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.04 E-value=4.3 Score=40.66 Aligned_cols=196 Identities=16% Similarity=0.253 Sum_probs=107.7
Q ss_pred EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCCc--------eeeeEEeeCCEEEEEecCCCCCCCC
Q 044903 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR--------RWCAAGYSRGAVYVASGIGSQFSSD 211 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~ 211 (387)
.++.++.||+.... ..++.+|..|. .|+.-...+... .....++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------- 128 (527)
T ss_pred CEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------
Confidence 34568888886542 35788888876 487643322110 11223556788887432
Q ss_pred CCceEEEEeCCCCccccCeEEcC-CCCCCcccccceeEEEECCEEEEEeee-----CCeEEEEECCCC--ceeec--ccc
Q 044903 212 VAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDDM--REG 281 (387)
Q Consensus 212 ~~~~v~vyd~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~~--~~~ 281 (387)
...+..+|..|++.. |+.-. ..... +. .....++.++++|+-... ...+.+||.+++ .|+.- +..
T Consensus 129 -dg~l~ALDa~TGk~~--W~~~~~~~~~~-~~-~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~ 203 (527)
T TIGR03075 129 -DARLVALDAKTGKVV--WSKKNGDYKAG-YT-ITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGD 203 (527)
T ss_pred -CCEEEEEECCCCCEE--eeccccccccc-cc-ccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCC
Confidence 126789999999866 87543 11111 11 113456678988875321 257899999876 57633 211
Q ss_pred cc------------C---CCC-----------CcEEEEe--CCeEEEEeCC---------------CCeEEEEeCCCC--
Q 044903 282 MV------------R---GWR-----------GPVAAMD--EEVLYGIDEN---------------SCTLSKYDEVMD-- 316 (387)
Q Consensus 282 ~~------------~---~~~-----------~~~~~~~--~g~ly~~g~~---------------~~~v~~yd~~~~-- 316 (387)
.. . .|. ....++. .+.||+-.++ ...|...|++|.
T Consensus 204 ~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~ 283 (527)
T TIGR03075 204 MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI 283 (527)
T ss_pred cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE
Confidence 00 0 010 0011222 3456765432 125888888876
Q ss_pred ceEEcccccc---cc--CceeEEE--eCCe---EEEEecCCceEEEEEecCC
Q 044903 317 DWKEVVKSDL---LK--GARHAAA--GGGR---VCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 317 ~W~~v~~~~~---~~--~~~~~~~--~~~~---l~v~gg~~~~i~v~d~~~~ 358 (387)
+|.-...... .. ....++. .+|+ +++.+...+.++++|..++
T Consensus 284 ~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 284 KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 4654332111 11 1223443 3665 8888778899999999865
No 102
>PTZ00420 coronin; Provisional
Probab=94.95 E-value=4.7 Score=40.63 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=70.5
Q ss_pred EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEE--EECCEEEEEeeeCCeEEEEECCCCc
Q 044903 197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAV--GWKGKLCLVNVKGAEGAVYDVVANT 274 (387)
Q Consensus 197 ~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v--~~~g~lyv~gg~~~~i~~yD~~~~~ 274 (387)
.+++.||.+. .+.+||..+.+.. . .+. .+.. ..++ ..+|.+.+.++.+..+.+||+.+.+
T Consensus 139 ~iLaSgS~Dg--------tIrIWDl~tg~~~--~-~i~-~~~~------V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFDS--------FVNIWDIENEKRA--F-QIN-MPKK------LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCCC--------eEEEEECCCCcEE--E-EEe-cCCc------EEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 3455555543 6788998877521 1 111 1111 2222 2367877777766789999998753
Q ss_pred ee-eccccccCCCCCcEEE-E----eCCeEEEEeCCC----CeEEEEeCCC-CceEEccccccccCce-eE-EEeCCeEE
Q 044903 275 WD-DMREGMVRGWRGPVAA-M----DEEVLYGIDENS----CTLSKYDEVM-DDWKEVVKSDLLKGAR-HA-AAGGGRVC 341 (387)
Q Consensus 275 W~-~~~~~~~~~~~~~~~~-~----~~g~ly~~g~~~----~~v~~yd~~~-~~W~~v~~~~~~~~~~-~~-~~~~~~l~ 341 (387)
=. ++.. ..+......+ . .++...+.++.+ +.|.+||..+ ..-..........+.. .. ....|.+|
T Consensus 201 ~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 201 IASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 21 1111 1111001111 1 233333333333 3699999874 2211111111111110 11 12247888
Q ss_pred EEecCCceEEEEEecCC
Q 044903 342 AVCENGGGIVVVDVKAA 358 (387)
Q Consensus 342 v~gg~~~~i~v~d~~~~ 358 (387)
+.|.++..|.+||+..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 88888899999998743
No 103
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=94.85 E-value=1.4 Score=39.26 Aligned_cols=175 Identities=11% Similarity=0.172 Sum_probs=93.3
Q ss_pred ccEEEeCCCCceeeCCCCCC--Cceee---eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903 165 RPLIFDPICRTWTFGPELVT--PRRWC---AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG 239 (387)
Q Consensus 165 ~~~vydp~t~~W~~l~~~~~--~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~ 239 (387)
.+.+++...+.|...-+... ...++ .+...++...+.++.+. .+-.+|..+.++. =+-+.
T Consensus 39 ~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~--------~lrlWDl~~g~~t--~~f~G----- 103 (315)
T KOG0279|consen 39 TIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG--------TLRLWDLATGEST--RRFVG----- 103 (315)
T ss_pred EEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc--------eEEEEEecCCcEE--EEEEe-----
Confidence 45666666666655332221 11111 12223556666666543 5667777776511 00000
Q ss_pred cccccc-eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-C--CeEEEEeCCCCeEEEEeCCC
Q 044903 240 RFSREA-IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-E--EVLYGIDENSCTLSKYDEVM 315 (387)
Q Consensus 240 ~~~~~~-~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~--g~ly~~g~~~~~v~~yd~~~ 315 (387)
...+. ..++.-|++-.+-|..+..+..||...+.=-++.......|- .++... + +-+.+-++.++.+.+||..+
T Consensus 104 -H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV-scvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 104 -HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV-SCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred -cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE-EEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 00010 222334566666666667788887766544444333323331 112222 2 22344445788899999987
Q ss_pred CceEEccccccccC--ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 316 DDWKEVVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 316 ~~W~~v~~~~~~~~--~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
-+-.. ..+...+ ....+..+|.++.-||.++.++.+|+.++
T Consensus 182 ~~l~~--~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 182 CQLRT--TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred cchhh--ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 63322 1112222 35566789999999999999999999865
No 104
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.79 E-value=4.7 Score=39.95 Aligned_cols=166 Identities=19% Similarity=0.158 Sum_probs=83.4
Q ss_pred CCEEEEEecCCCCC---------CCCCCceEEEEeCCCCccccCeEEcCCCCCC-----cccccceeEEEECCE---EEE
Q 044903 195 RGAVYVASGIGSQF---------SSDVAKSVEKWDLMNGEKNSRWEKTGELKDG-----RFSREAIDAVGWKGK---LCL 257 (387)
Q Consensus 195 ~~~iyv~GG~~~~~---------~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~-----~~~~~~~~~v~~~g~---lyv 257 (387)
++.+|+-.+.+... .......+..+|..+.+.. |+.-...+.. ............+|. +.+
T Consensus 228 ~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~--W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~ 305 (488)
T cd00216 228 TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK--WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIV 305 (488)
T ss_pred CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE--EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence 56788765432110 1123347899999999866 9854322111 000000001113343 223
Q ss_pred EeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEe-----------------CCCCeEEEEeCCCC--
Q 044903 258 VNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGID-----------------ENSCTLSKYDEVMD-- 316 (387)
Q Consensus 258 ~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g-----------------~~~~~v~~yd~~~~-- 316 (387)
++.....++++|.++. .|+.-..... ++...+.+|+-. ...+.+..+|.++.
T Consensus 306 ~g~~~G~l~ald~~tG~~~W~~~~~~~~-------~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~ 378 (488)
T cd00216 306 HAPKNGFFYVLDRTTGKLISARPEVEQP-------MAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV 378 (488)
T ss_pred EECCCceEEEEECCCCcEeeEeEeeccc-------cccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence 3333457899999877 5874321000 111124555522 12356788887654
Q ss_pred ceEEccccc-------cccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCc
Q 044903 317 DWKEVVKSD-------LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGF 372 (387)
Q Consensus 317 ~W~~v~~~~-------~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~ 372 (387)
.|+.-...- .......++..++.||+- ..++.++.+|.+++ ...|+..++.+.
T Consensus 379 ~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g-~~dG~l~ald~~tG--~~lW~~~~~~~~ 438 (488)
T cd00216 379 VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG-AADGYFRAFDATTG--KELWKFRTPSGI 438 (488)
T ss_pred eeEeeCCccccccccCCcccCcceEecCCeEEEE-CCCCeEEEEECCCC--ceeeEEECCCCc
Confidence 576632200 001112234455555544 56788999998743 467998766554
No 105
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.74 E-value=4.4 Score=39.80 Aligned_cols=176 Identities=14% Similarity=0.057 Sum_probs=95.1
Q ss_pred CccEEEeCCCC-c-eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903 164 TRPLIFDPICR-T-WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vydp~t~-~-W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~ 241 (387)
..+.+||...+ . =+.+..+.......+... .+++++.|+.+. .+.++|..+.+ -...-.......
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~--------tvriWd~~~~~----~~~~l~~hs~~i 291 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDG--------TVRIWDVRTGE----CVRKLKGHSDGI 291 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCC--------cEEEEeccCCe----EEEeeeccCCce
Confidence 45677888433 2 233444444442222222 347888887755 78889988866 322221111110
Q ss_pred cccceeEEEECCEEEEEeeeCCeEEEEECCCCcee---eccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCc
Q 044903 242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD---DMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDD 317 (387)
Q Consensus 242 ~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~---~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~ 317 (387)
...+..-+|.+++.+.....+.+||+.++.-. .+....... .-..+... +++..+.+..++.+..||..+..
T Consensus 292 ---s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 292 ---SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred ---EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 12222335677777766688999999888743 222211111 11233332 34433444456689999987553
Q ss_pred ----eEEccccccccCceeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903 318 ----WKEVVKSDLLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 318 ----W~~v~~~~~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
|+..... .+..+..+ ..+++..+.|..+..|.++|+.+.
T Consensus 368 ~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 368 SVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred ceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 2222221 12222223 447788888788899999999954
No 106
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.74 E-value=4.6 Score=39.54 Aligned_cols=176 Identities=7% Similarity=-0.001 Sum_probs=94.0
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|..+++-+.+...+..........-+.+|++....+. ...++++|..+++ .+.+..-....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~----~~~lt~~~~~~--- 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKA----LTRITRHRAID--- 308 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCC----eEECccCCCCc---
Confidence 5689999998887777655422222222223445665543221 2478889999988 87776422111
Q ss_pred cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W 318 (387)
......-+|+ |++..... ..++.+|+.+++++.+...... ...+...-.++.|++.....+ .|+++|+++...
T Consensus 309 -~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 309 -TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred -cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 1112223554 54443322 5788889988888776421111 112233334456666654333 588899998887
Q ss_pred EEccccccccCceeEEEeCCeEEEEec-CC--ceEEEEEec
Q 044903 319 KEVVKSDLLKGARHAAAGGGRVCAVCE-NG--GGIVVVDVK 356 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg-~~--~~i~v~d~~ 356 (387)
+.+....... .. ...-+|+.+++.. .+ ..++++|..
T Consensus 387 ~~lt~~~~d~-~p-s~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 387 QVLTSTRLDE-SP-SVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEccCCCCCC-Cc-eECCCCCEEEEEEecCCceEEEEEECC
Confidence 7665322111 12 2334454444432 22 347777875
No 107
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.70 E-value=5.4 Score=42.23 Aligned_cols=101 Identities=4% Similarity=-0.050 Sum_probs=58.8
Q ss_pred CCEEEEEeeeCCeEEEEECCCCce-eeccccccCCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAM--DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~--~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~ 328 (387)
++.+++.|+.+..+.+||..+..- ..+.. .. ...++.. .++.+++.|+.++.|.+||..+..- .+.......
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~--~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~ 661 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKT--KA--NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHS 661 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEEec--CC--CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCC
Confidence 466777777778899999876432 22211 00 1112222 2467788888889999999875421 111111122
Q ss_pred Cc-eeEEEeCCeEEEEecCCceEEEEEecC
Q 044903 329 GA-RHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 329 ~~-~~~~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
.. ..+...++..++.++.++.+-+||+..
T Consensus 662 ~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 662 KTVSYVRFVDSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCEEEEEEeCCCEEEEEECCCEEEEEeCCC
Confidence 22 223234667777777788899998863
No 108
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=94.59 E-value=3.3 Score=37.21 Aligned_cols=159 Identities=11% Similarity=0.067 Sum_probs=80.3
Q ss_pred CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc-cceeEE-EEC-CEEEE
Q 044903 181 ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR-EAIDAV-GWK-GKLCL 257 (387)
Q Consensus 181 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~-~~~~~v-~~~-g~lyv 257 (387)
|||.......+-.-.++....||.++ ..-+|+..+.. =+...++....... ...+.+ .++ +.|.
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLdN--------~Csiy~ls~~d----~~g~~~v~r~l~gHtgylScC~f~dD~~il- 160 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLDN--------KCSIYPLSTRD----AEGNVRVSRELAGHTGYLSCCRFLDDNHIL- 160 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcCc--------eeEEEeccccc----ccccceeeeeecCccceeEEEEEcCCCceE-
Confidence 34443333333333567777888765 56788888653 11111111111110 111122 223 3332
Q ss_pred EeeeCCeEEEEECCCCceeeccccccCCCCCcEEE----EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccC--ce
Q 044903 258 VNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG--AR 331 (387)
Q Consensus 258 ~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~----~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~--~~ 331 (387)
.+..+.....+|.++.+=...=. +..+..++ -.+++.|+-|+.+...++||.... ..+...+.+.. +.
T Consensus 161 T~SGD~TCalWDie~g~~~~~f~----GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 161 TGSGDMTCALWDIETGQQTQVFH----GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINS 234 (343)
T ss_pred ecCCCceEEEEEcccceEEEEec----CCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccccccce
Confidence 22222567777887765433211 11111111 226788999988889999998766 23333333332 23
Q ss_pred eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 332 HAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 332 ~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
..+--+|.-++.|..+...-+||+.+.
T Consensus 235 v~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 235 VRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred EEEccCCCeeeecCCCceeEEEeecCC
Confidence 334446777777666666777777743
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.57 E-value=5.6 Score=39.80 Aligned_cols=170 Identities=12% Similarity=0.111 Sum_probs=94.2
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..+.++|..+++--.+-.- .-....++.+++.+.|.|..+. .+-+||+.+.+ --..-.-...+
T Consensus 311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~--------~v~VW~~~~~~----cl~sl~gH~~~--- 373 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDG--------TVKVWDPRTGK----CLKSLSGHTGR--- 373 (537)
T ss_pred ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCc--------eEEEEEhhhce----eeeeecCCcce---
Confidence 3456666665443332110 0011223445666777766543 78888888776 32221111111
Q ss_pred cceeEEEECC-EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE----EeCCeEEEEeCCCCeEEEEeCCCCce
Q 044903 244 EAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~----~~~g~ly~~g~~~~~v~~yd~~~~~W 318 (387)
..+..+++ ..++-|+.+..+.+.|+++.. . ......++..+ ...++.++-+..++.|.+||.++..=
T Consensus 374 --V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~----~--c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 374 --VYSLIVDSENRLLSGSLDTTIKVWDLRTKR----K--CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred --EEEEEecCcceEEeeeeccceEeecCCchh----h--hhhhhcCCcccccccccccceeEeccccccEEEeecccCce
Confidence 23446677 566666666788888888775 1 11112222222 23355666666788999999988755
Q ss_pred EEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCC
Q 044903 319 KEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAA 359 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~ 359 (387)
.++..-+ ......+...+...++..+..+.+.++|+..+.
T Consensus 446 ~~~~~~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 446 LRTLEGR-HVGGVSALALGKEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eeeeccC-CcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence 5544333 333333444444666666778888888888663
No 110
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.28 E-value=4.3 Score=37.31 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=73.6
Q ss_pred CCCceeeCCCCCCCceeeeEEeeC-CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE
Q 044903 172 ICRTWTFGPELVTPRRWCAAGYSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG 250 (387)
Q Consensus 172 ~t~~W~~l~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~ 250 (387)
..+.|+.+. +|...........+ +.-|++|..+. +|-....-. +|.....-..............
T Consensus 4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g~-----------il~T~DGG~--tW~~~~~~~~~~~~~~l~~I~f 69 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYGT-----------ILKTTDGGK--TWQPVSLDLDNPFDYHLNSISF 69 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTTE-----------EEEESSTTS--S-EE-----S-----EEEEEEE
T ss_pred cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCCE-----------EEEECCCCc--cccccccCCCccceeeEEEEEe
Confidence 356788875 33333444444444 56788775432 111111111 2988762221111111122334
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeecccccc-CCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccC
Q 044903 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMV-RGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG 329 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~-~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~ 329 (387)
.++..|++|..+ .+..-.=.-.+|+.++-..+ .+......+..++.+.+.+ ..+.|++=.-....|+.+.......-
T Consensus 70 ~~~~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~~~gs~ 147 (302)
T PF14870_consen 70 DGNEGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSETSGSI 147 (302)
T ss_dssp ETTEEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S----E
T ss_pred cCCceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccCCccee
Confidence 577888886543 22222223559999863211 1211122334456666665 46778887777889998764322111
Q ss_pred ceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 330 ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 330 ~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
......-+|++++++..|.-...+|+-.. .|+.
T Consensus 148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~----~w~~ 180 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSRGNFYSSWDPGQT----TWQP 180 (302)
T ss_dssp EEEEE-TTS-EEEEETTSSEEEEE-TT-S----S-EE
T ss_pred EeEEECCCCcEEEEECcccEEEEecCCCc----cceE
Confidence 12223456777777655655566676643 6876
No 111
>PRK13684 Ycf48-like protein; Provisional
Probab=94.25 E-value=4.8 Score=37.71 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=86.1
Q ss_pred cEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEE-EEeCCCCccccCeEEcCCCCCCccccc
Q 044903 166 PLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVE-KWDLMNGEKNSRWEKTGELKDGRFSRE 244 (387)
Q Consensus 166 ~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~-vyd~~t~~~~~~W~~~~~~~~~~~~~~ 244 (387)
+++=+-.-++|+++...... ..+......+..+++.|... .+. ..|....+ |..+.......
T Consensus 154 i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~t----W~~~~~~~~~~---- 216 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTA----WTPHQRNSSRR---- 216 (334)
T ss_pred EEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCe----EEEeeCCCccc----
Confidence 34434445689987543322 23333444444444444322 111 12333445 98876422211
Q ss_pred ceeEE-EECCEEEEEeeeCCeEEEEE-CC-CCceeecccccc-CCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceE
Q 044903 245 AIDAV-GWKGKLCLVNVKGAEGAVYD-VV-ANTWDDMREGMV-RGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWK 319 (387)
Q Consensus 245 ~~~~v-~~~g~lyv~gg~~~~i~~yD-~~-~~~W~~~~~~~~-~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~ 319 (387)
....+ .-++.++++|..+ ...+. .. -.+|+.+..... ....-..++.. ++.+|+.+. .|.++.-.....+|+
T Consensus 217 l~~i~~~~~g~~~~vg~~G--~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G~tW~ 293 (334)
T PRK13684 217 LQSMGFQPDGNLWMLARGG--QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGGKTWE 293 (334)
T ss_pred ceeeeEcCCCCEEEEecCC--EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCCCCCe
Confidence 12222 2367888886544 23342 22 348997643211 11212223332 567887764 566666566678999
Q ss_pred Ecccccc-ccCceeEE-EeCCeEEEEecCCceEEEEEec
Q 044903 320 EVVKSDL-LKGARHAA-AGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 320 ~v~~~~~-~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
.+..... ....+.++ ..+++++++ |..+.|..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~~ 331 (334)
T PRK13684 294 KDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVGS 331 (334)
T ss_pred ECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecCC
Confidence 9864222 22333444 446777776 666777777765
No 112
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=94.11 E-value=2.5 Score=38.68 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=59.2
Q ss_pred EEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC--------------------Cce
Q 044903 290 VAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN--------------------GGG 349 (387)
Q Consensus 290 ~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~--------------------~~~ 349 (387)
+.-.++|+||+.+...+++..+|+++.+.+.+...|..... +.-+ |.+.++|-. ..+
T Consensus 207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rG--L~f~-G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG 283 (335)
T TIGR03032 207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRG--LAFA-GDFAFVGLSKLRESRVFGGLPIEERLDALGCG 283 (335)
T ss_pred CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcc--ccee-CCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence 44567899999998889999999999999998776653332 2233 667777631 147
Q ss_pred EEEEEecCCCCCceeEEcCCCCceeeEEEeccc
Q 044903 350 IVVVDVKAAAAPTIFVVDTPLGFEALSVHILPR 382 (387)
Q Consensus 350 i~v~d~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 382 (387)
++|+|..++.....-++.-.-. |+.-|.++|-
T Consensus 284 v~vidl~tG~vv~~l~feg~v~-EifdV~vLPg 315 (335)
T TIGR03032 284 VAVIDLNSGDVVHWLRFEGVIE-EIYDVAVLPG 315 (335)
T ss_pred EEEEECCCCCEEEEEEeCCcee-EEEEEEEecC
Confidence 8888888663223122232222 6778888883
No 113
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.01 E-value=5 Score=37.03 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=76.7
Q ss_pred CceEEEEeCCCCccccCeEEcCCCCC-CcccccceeEEEECCE-EEEEeeeCCeE--EEEECCCCceeeccc--cccCCC
Q 044903 213 AKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKGK-LCLVNVKGAEG--AVYDVVANTWDDMRE--GMVRGW 286 (387)
Q Consensus 213 ~~~v~vyd~~t~~~~~~W~~~~~~~~-~~~~~~~~~~v~~~g~-lyv~gg~~~~i--~~yD~~~~~W~~~~~--~~~~~~ 286 (387)
.+.+.+|+...+. -....+... +-.+.+ |-+.--+++ .|+++.-...+ +.||...++.++++. .+|..+
T Consensus 166 ~Dri~~y~~~dg~----L~~~~~~~v~~G~GPR-Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 166 TDRIFLYDLDDGK----LTPADPAEVKPGAGPR-HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred CceEEEEEcccCc----cccccccccCCCCCcc-eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 3478888888666 333321111 111111 333333555 58887766554 456666678877762 234443
Q ss_pred CC---cEEE---EeCCeEEEEeCCCCeEEEE--eCCCCceEEcccccc---ccCceeEEEeCCeEEEEecCCceEEEEEe
Q 044903 287 RG---PVAA---MDEEVLYGIDENSCTLSKY--DEVMDDWKEVVKSDL---LKGARHAAAGGGRVCAVCENGGGIVVVDV 355 (387)
Q Consensus 287 ~~---~~~~---~~~g~ly~~g~~~~~v~~y--d~~~~~W~~v~~~~~---~~~~~~~~~~~~~l~v~gg~~~~i~v~d~ 355 (387)
.+ .+++ ..|..||+..-....|.+| |+.+.+-.-+..-+. .-+.+.+...++.|++.+..+.++.||..
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 31 1211 3345677764323456666 666665444432221 12245555666677777667788888877
Q ss_pred cCCCCCc
Q 044903 356 KAAAAPT 362 (387)
Q Consensus 356 ~~~~~~~ 362 (387)
+. ..|+
T Consensus 321 d~-~TG~ 326 (346)
T COG2706 321 DK-ETGR 326 (346)
T ss_pred cC-CCce
Confidence 73 3444
No 114
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.98 E-value=6.5 Score=38.25 Aligned_cols=178 Identities=11% Similarity=0.049 Sum_probs=92.2
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|+.+++.+.+...+..........-+.+|++....+. ...++++|..+++ -+.+..-+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~Lt~~~~~---- 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGT----TTRLTDSPAI---- 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCc----eEEccCCCCc----
Confidence 5789999999988887655432222222223445555433221 2468888998887 6666543211
Q ss_pred cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 044903 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--~~v~~yd~~~~~W 318 (387)
.......-+|+ |++..... ..++++|......+.+... ......+...-.|+.|++..... ..++++|+++...
T Consensus 292 ~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 11122223454 44332222 5788889877766665431 11111222223344565554322 3689999877765
Q ss_pred EEccccccccCceeEEEeCCeEEEE-ecC-C----ceEEEEEecCC
Q 044903 319 KEVVKSDLLKGARHAAAGGGRVCAV-CEN-G----GGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~l~v~-gg~-~----~~i~v~d~~~~ 358 (387)
+.+..... .... ...-+|+.+++ ... + ..++++|....
T Consensus 371 ~~lt~~~~-~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSGFL-VEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCCCC-CCCC-eECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 55443211 1112 23335554444 321 1 36888888743
No 115
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.95 E-value=4.1 Score=35.82 Aligned_cols=132 Identities=10% Similarity=0.079 Sum_probs=74.4
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCccc--cccee--EEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcE
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFS--REAID--AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~--~~~~~--~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
.+-.||..++.+ .|...+. ..+.. +..++|+....|+.+..+.+.|+..-.-...-. .+. .-.+
T Consensus 62 hvRlyD~~S~np---------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~s--pVn~ 129 (311)
T KOG0315|consen 62 HVRLYDLNSNNP---------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNS--PVNT 129 (311)
T ss_pred eeEEEEccCCCC---------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCC--Ccce
Confidence 678888888771 1111110 01122 334688877777777788888887632222211 111 1223
Q ss_pred EEEeCCe-EEEEeCCCCeEEEEeCCCCceEEccccccccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 291 AAMDEEV-LYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~g~-ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
++..-++ -.+.+..+|.|++||+.++.-.....+..... .-..+..+|++++..-+.++.+|++.-+.
T Consensus 130 vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred EEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence 4443332 22333457899999999997766443322222 22344567777776556788999988753
No 116
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.73 E-value=1.9 Score=43.13 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=71.3
Q ss_pred eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc---c--cceeEEEECCEEEEEeeeCCe
Q 044903 190 AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS---R--EAIDAVGWKGKLCLVNVKGAE 264 (387)
Q Consensus 190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~---~--~~~~~v~~~g~lyv~gg~~~~ 264 (387)
+.++.++.||+.... ..+..+|..|++.. |+.-...+..... . .....++.++++|+... ...
T Consensus 64 tPvv~~g~vyv~s~~---------g~v~AlDa~TGk~l--W~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg~ 131 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY---------SRVYALDAKTGKEL--WKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DAR 131 (527)
T ss_pred CCEEECCEEEEECCC---------CcEEEEECCCCcee--eEecCCCCcccccccccccccccceEECCEEEEEcC-CCE
Confidence 345678999986432 25788999988866 8865543321110 0 01123567888887543 347
Q ss_pred EEEEECCCC--ceeeccccccCCC-CCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCC--ceEE
Q 044903 265 GAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDEEVLYGIDE-----NSCTLSKYDEVMD--DWKE 320 (387)
Q Consensus 265 i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~g~ly~~g~-----~~~~v~~yd~~~~--~W~~ 320 (387)
+.++|.++. .|+.-......+. ...+.++.+++||+-.. .++.|..||.++. .|+.
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999999876 6875432222111 11233456788877532 2467999998775 4764
No 117
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.31 E-value=2.4 Score=39.24 Aligned_cols=218 Identities=19% Similarity=0.179 Sum_probs=101.5
Q ss_pred hHHHhhHhhhhhcc-CCCCCCcceEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccce
Q 044903 62 ILHNVCHSWRRLIY-SPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPV 140 (387)
Q Consensus 62 ~~r~Vck~W~~li~-s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 140 (387)
|+-++-+++..-++ +..| +|+.- .++..++-+.|...++...--+.|. +-..| =.+..+|
T Consensus 90 R~~~~~~~~~~~ls~dgk~-----~~V~N------~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iy-----P~~~~~F 150 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKF-----LYVQN------FTPATSVTVVDLAAKKVVGEIDTPG---CWLIY-----PSGNRGF 150 (342)
T ss_dssp B--BS--GGGEEE-TTSSE-----EEEEE------ESSSEEEEEEETTTTEEEEEEEGTS---EEEEE-----EEETTEE
T ss_pred hheecccccceEEccCCcE-----EEEEc------cCCCCeEEEEECCCCceeeeecCCC---EEEEE-----ecCCCce
Confidence 44444455554444 3333 55442 3478889999999987755444444 11111 0112346
Q ss_pred eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD 220 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd 220 (387)
...+-+|.+..+.--... .......-+|++..+-.-.-+.....-........+|++|-+-=.+. ...-...++
T Consensus 151 ~~lC~DGsl~~v~Ld~~G-k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~-----~~~~~~~~~ 224 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADG-KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD-----SAKFGKPWS 224 (342)
T ss_dssp EEEETTSCEEEEEETSTS-SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS-----SEEEEEEEE
T ss_pred EEEecCCceEEEEECCCC-CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC-----cccccCccc
Confidence 677777776666432111 11122234666655433222222111122334667888887532221 111222333
Q ss_pred CCCCcc-ccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeC---------CeEEEEECCCCce-eeccccccCCCC
Q 044903 221 LMNGEK-NSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKG---------AEGAVYDVVANTW-DDMREGMVRGWR 287 (387)
Q Consensus 221 ~~t~~~-~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~---------~~i~~yD~~~~~W-~~~~~~~~~~~~ 287 (387)
..++.. .-.|+.-. ....+. -.++||++=..+ ..+++||+++.+= ..++-.-+
T Consensus 225 ~~t~~e~~~~WrPGG----------~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~---- 290 (342)
T PF06433_consen 225 LLTDAEKADGWRPGG----------WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP---- 290 (342)
T ss_dssp SS-HHHHHTTEEE-S----------SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE----
T ss_pred ccCccccccCcCCcc----------eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc----
Confidence 322110 00166433 122222 257999873222 7899999998742 23321111
Q ss_pred CcEEEEeC-C--eEEEEeCCCCeEEEEeCCCCce
Q 044903 288 GPVAAMDE-E--VLYGIDENSCTLSKYDEVMDDW 318 (387)
Q Consensus 288 ~~~~~~~~-g--~ly~~g~~~~~v~~yd~~~~~W 318 (387)
..++.+.. . .||.+...++.+.+||..+.+-
T Consensus 291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 11333332 2 4777766678999999998743
No 118
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=93.25 E-value=4.6 Score=35.40 Aligned_cols=124 Identities=13% Similarity=0.105 Sum_probs=67.2
Q ss_pred eEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE--eCCeEEEEeCC
Q 044903 230 WEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDEN 304 (387)
Q Consensus 230 W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~g~ly~~g~~ 304 (387)
|+...+|..........-+..+ .|.++..||.+ .++..|+++++-+..-.+-.. .-++++. .+++ .+-|++
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G~i~r~~rGHtD--YvH~vv~R~~~~q-ilsG~E 176 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDGRIQREYRGHTD--YVHSVVGRNANGQ-ILSGAE 176 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCCEEEEEEcCCcc--eeeeeeecccCcc-eeecCC
Confidence 8877776542211111223333 47787777654 677778888887654322111 1233332 1233 345668
Q ss_pred CCeEEEEeCCCCceEEcccc---c-ccc----CceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 305 SCTLSKYDEVMDDWKEVVKS---D-LLK----GARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 305 ~~~v~~yd~~~~~W~~v~~~---~-~~~----~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
+|.+.+||.++.+=..+..+ + ..+ ....+...+.. +++.|+|.+..++.....
T Consensus 177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp~lslwhLrss 237 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGPKLSLWHLRSS 237 (325)
T ss_pred CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCCceeEEeccCC
Confidence 99999999998876554322 1 122 12334444444 445566666666666544
No 119
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.10 E-value=9.4 Score=37.37 Aligned_cols=135 Identities=15% Similarity=0.037 Sum_probs=71.6
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcE
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..++++|..+++ -..+...+.... .....-+|+ |++..... ..++.+|+++++.+.+...... ...++
T Consensus 242 ~~L~~~dl~tg~----~~~lt~~~g~~~----~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~ 312 (448)
T PRK04792 242 AEIFVQDIYTQV----REKVTSFPGING----APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAI-DTEPS 312 (448)
T ss_pred cEEEEEECCCCC----eEEecCCCCCcC----CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCC-ccceE
Confidence 468889998887 666654432111 112223454 54443222 5688899998888776542111 11122
Q ss_pred EEEeCCeEEEEeCCC--CeEEEEeCCCCceEEccccccccCceeEEEeCC-eEEEEecC--CceEEEEEecCC
Q 044903 291 AAMDEEVLYGIDENS--CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG-RVCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~g~ly~~g~~~--~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~-~l~v~gg~--~~~i~v~d~~~~ 358 (387)
..-.+..|++..... ..++.+|.++.+++.+......... ....-+| .|++.+.. ...++++|+.++
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~-~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG-GSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC-eeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 222344565554333 3588999998888876422111111 1233344 45554332 246788887754
No 120
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.08 E-value=8.7 Score=36.92 Aligned_cols=144 Identities=8% Similarity=-0.080 Sum_probs=76.6
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|..+++-..+..........+...-+..|++...... ...++.+|..++. ...+........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~----~~~l~~~~~~~~-- 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQ----LTRLTNGPGIDT-- 281 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC------CccEEEEECCCCC----EEECCCCCCCCC--
Confidence 5689999998877766544322222222222345665543221 2468889998887 776654321110
Q ss_pred cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC---CeEEEEeCCCCc
Q 044903 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS---CTLSKYDEVMDD 317 (387)
Q Consensus 244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~---~~v~~yd~~~~~ 317 (387)
.....-+|+ |++..... ..++.+|..+..++.+...... ...+. ...+|+.+++.... ..|+.||+++..
T Consensus 282 --~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~-~~~~~-~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 282 --EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY-NASPS-WSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred --CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC-ccCeE-ECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 111122554 54443322 4788889888887766431111 11122 22244444443322 269999999877
Q ss_pred eEEccc
Q 044903 318 WKEVVK 323 (387)
Q Consensus 318 W~~v~~ 323 (387)
++.+..
T Consensus 358 ~~~l~~ 363 (417)
T TIGR02800 358 ERVLTD 363 (417)
T ss_pred eEEccC
Confidence 766553
No 121
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.03 E-value=8.3 Score=36.58 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=109.9
Q ss_pred EEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903 143 VSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD 220 (387)
Q Consensus 143 ~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd 220 (387)
+..++.+|+... ...++.+|+.+.+ |+....-............+|+||+-...+ .+.+||
T Consensus 65 ~~~dg~v~~~~~--------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g---------~~y~ld 127 (370)
T COG1520 65 ADGDGTVYVGTR--------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG---------KLYALD 127 (370)
T ss_pred EeeCCeEEEecC--------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc---------eEEEEE
Confidence 567888888621 1268889999887 876433100001111122267777653321 688999
Q ss_pred CCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccc-ccCCCCCcEEEEeCCe
Q 044903 221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREG-MVRGWRGPVAAMDEEV 297 (387)
Q Consensus 221 ~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~-~~~~~~~~~~~~~~g~ 297 (387)
..+.+.. |..-.+.. .. -....++.++.+|+.. ....++++|.++. .|+.--.. ......+... ..++.
T Consensus 128 ~~~G~~~--W~~~~~~~-~~---~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~ 199 (370)
T COG1520 128 ASTGTLV--WSRNVGGS-PY---YASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT 199 (370)
T ss_pred CCCCcEE--EEEecCCC-eE---EecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecce
Confidence 9777755 98766441 11 1244666788888774 2247788888754 78743321 1222222222 55677
Q ss_pred EEEEeCC-CCeEEEEeCCCC--ceEEcccccc--------ccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 298 LYGIDEN-SCTLSKYDEVMD--DWKEVVKSDL--------LKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 298 ly~~g~~-~~~v~~yd~~~~--~W~~v~~~~~--------~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
+|+-... ++.++.+|+++. .|+.-...+. .......+..++.+|.. ..++.++.+|... ....|+.
T Consensus 200 vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~g~~~~l~~~~--G~~~W~~ 276 (370)
T COG1520 200 VYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG-SYGGKLLCLDADT--GELIWSF 276 (370)
T ss_pred EEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE-ecCCeEEEEEcCC--CceEEEE
Confidence 8877532 457899998654 6774211111 11122334445555444 2345577777763 2467888
Q ss_pred cCC
Q 044903 367 DTP 369 (387)
Q Consensus 367 ~~~ 369 (387)
..+
T Consensus 277 ~~~ 279 (370)
T COG1520 277 PAG 279 (370)
T ss_pred ecc
Confidence 665
No 122
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.81 E-value=6.4 Score=34.67 Aligned_cols=176 Identities=10% Similarity=0.034 Sum_probs=82.8
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEE--eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAG--YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~ 241 (387)
..+-.||..++.=..+...-..+...+++ -.+|+-...||.+. .+.++|...-. -...-..+.+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg--------t~kIWdlR~~~----~qR~~~~~spV- 127 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG--------TVKIWDLRSLS----CQRNYQHNSPV- 127 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc--------eEEEEeccCcc----cchhccCCCCc-
Confidence 45678888776522221111122222222 23556555666543 56666655433 22221122111
Q ss_pred cccceeEEEECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceE-
Q 044903 242 SREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWK- 319 (387)
Q Consensus 242 ~~~~~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~- 319 (387)
...+..-++--++.|.. ..|.+.|+.++........-....-....+..+|.+.+-..+.|..++|+.-++.-.
T Consensus 128 ----n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 128 ----NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred ----ceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 22233334333333333 689999999987654431011111112333445665555556788999988764221
Q ss_pred Ecccccc--ccCc---eeEEEeCCeEEEEecCCceEEEEEec
Q 044903 320 EVVKSDL--LKGA---RHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 320 ~v~~~~~--~~~~---~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
++.+..- .+.. -+...-+++.++..+.+..+.+++.+
T Consensus 204 ~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 204 ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 1211111 1111 23334566666666655555555554
No 123
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.72 E-value=3.2 Score=39.94 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=58.7
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEE-
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAA- 292 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~- 292 (387)
.|..||.....+++.|.+....|... .+....+..|++--|++..|..||...+.=. .+...-|. .+++
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~~g-----icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl----stvaf 258 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPCRG-----ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL----STVAF 258 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCcCc-----ceecCCccceEEEecccceEEEeecccccccceeeecCCc----ceeee
Confidence 56777877777777788877666332 3344557778887788889999998755322 22221121 2333
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCC
Q 044903 293 MDEEVLYGIDENSCTLSKYDEVM 315 (387)
Q Consensus 293 ~~~g~ly~~g~~~~~v~~yd~~~ 315 (387)
..+|...+.|...|+|+.||+..
T Consensus 259 ~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 259 SECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred cCCceEEEeecCCceEEEEeccc
Confidence 33466666776778999999854
No 124
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.56 E-value=7.4 Score=34.76 Aligned_cols=158 Identities=14% Similarity=0.045 Sum_probs=90.6
Q ss_pred ceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCcee---eCCCCCC---------CceeeeEEeeCCEEEEEecCCC
Q 044903 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWT---FGPELVT---------PRRWCAAGYSRGAVYVASGIGS 206 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~---~l~~~~~---------~r~~~~~~~~~~~iyv~GG~~~ 206 (387)
|.+.++.+|.+|.--. ..+.+..||..+++-. .||.... +-.....++-.+-|+|+=....
T Consensus 71 GtG~vVYngslYY~~~-------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~ 143 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKY-------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED 143 (250)
T ss_pred cCCeEEECCcEEEEec-------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCC
Confidence 4556677787777432 3578899999998655 4543221 1123455666777888755433
Q ss_pred CCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccc
Q 044903 207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGM 282 (387)
Q Consensus 207 ~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~ 282 (387)
. . ..-.+-..|+.+-+..-+|..- .+... ...+.++=|.||++.... ....+||+.+++=..+...+
T Consensus 144 ~--~-g~ivvskld~~tL~v~~tw~T~--~~k~~----~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f 214 (250)
T PF02191_consen 144 N--N-GNIVVSKLDPETLSVEQTWNTS--YPKRS----AGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPF 214 (250)
T ss_pred C--C-CcEEEEeeCcccCceEEEEEec--cCchh----hcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeee
Confidence 1 1 1112333444332211127643 22222 133556678999986654 34578999988766555444
Q ss_pred cCCCCCcEEEEe---CCeEEEEeCCCCeEEEEeCC
Q 044903 283 VRGWRGPVAAMD---EEVLYGIDENSCTLSKYDEV 314 (387)
Q Consensus 283 ~~~~~~~~~~~~---~g~ly~~g~~~~~v~~yd~~ 314 (387)
+......++.-. +.+||+.+ +|.+..|+..
T Consensus 215 ~~~~~~~~~l~YNP~dk~LY~wd--~G~~v~Y~v~ 247 (250)
T PF02191_consen 215 PNPYGNISMLSYNPRDKKLYAWD--NGYQVTYDVR 247 (250)
T ss_pred ccccCceEeeeECCCCCeEEEEE--CCeEEEEEEE
Confidence 444444444433 56899984 6888888764
No 125
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.55 E-value=7.4 Score=34.75 Aligned_cols=190 Identities=15% Similarity=0.113 Sum_probs=99.8
Q ss_pred CCEEEEEcCccCCCCCCCCccEEEeC-----CCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903 146 SGKLILLAATTHNFNPALTRPLIFDP-----ICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD 220 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vydp-----~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd 220 (387)
++++|++.+... +.+..|.. ..++..+.-.+|.+-...+.++.+|.+|--- ...+.+..||
T Consensus 30 ~~~iy~~~~~~~------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~--------~~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSG------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNK--------YNSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCC------CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEe--------cCCceEEEEE
Confidence 467888877533 24444432 2333333334455555667777888887642 2345889999
Q ss_pred CCCCccccCeEEcCCCCCC-c--cc---ccceeEEEECCEEEEE---eeeC--CeEEEEECC----CCceeeccccccCC
Q 044903 221 LMNGEKNSRWEKTGELKDG-R--FS---REAIDAVGWKGKLCLV---NVKG--AEGAVYDVV----ANTWDDMREGMVRG 285 (387)
Q Consensus 221 ~~t~~~~~~W~~~~~~~~~-~--~~---~~~~~~v~~~g~lyv~---gg~~--~~i~~yD~~----~~~W~~~~~~~~~~ 285 (387)
+.+.... .|..++..... + +. -.....++-++-|.++ .... -.+-..|++ ..+|.+- ....
T Consensus 96 L~t~~v~-~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~---~~k~ 171 (250)
T PF02191_consen 96 LTTRSVV-ARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS---YPKR 171 (250)
T ss_pred CcCCcEE-EEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec---cCch
Confidence 9998710 13334322111 0 00 0112233434445555 1111 123334554 3477753 2223
Q ss_pred CCCcEEEEeCCeEEEEeCCC---Ce-EEEEeCCCCceEEccc-cccccCceeEEEe---CCeEEEEecCCceEEEEEec
Q 044903 286 WRGPVAAMDEEVLYGIDENS---CT-LSKYDEVMDDWKEVVK-SDLLKGARHAAAG---GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 286 ~~~~~~~~~~g~ly~~g~~~---~~-v~~yd~~~~~W~~v~~-~~~~~~~~~~~~~---~~~l~v~gg~~~~i~v~d~~ 356 (387)
..+.+-.+| |.||++...+ .. .++||..+++=..+.. .+.......++.+ +.+||+. +++..+.|++.
T Consensus 172 ~~~naFmvC-GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w--d~G~~v~Y~v~ 247 (250)
T PF02191_consen 172 SAGNAFMVC-GVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW--DNGYQVTYDVR 247 (250)
T ss_pred hhcceeeEe-eEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE--ECCeEEEEEEE
Confidence 334455566 6999998543 22 6889998775554332 1222334455554 6788888 45667777764
No 126
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.52 E-value=5.5 Score=40.42 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=65.1
Q ss_pred EEEECCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc-eEEccccc
Q 044903 248 AVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD-WKEVVKSD 325 (387)
Q Consensus 248 ~v~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~-W~~v~~~~ 325 (387)
+..-||.+.+.|+.+.++-+||..+.-.. +... ...+..+-+. ...|+..+...-+|+|..||.+.-+ .+....+
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P- 433 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQF-TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP- 433 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEE-EecCCEEEEeecCCeEEeeeecccceeeeecCC-
Confidence 33447888888888888999987765332 2221 2222211222 2245555555578999999997642 3333332
Q ss_pred cccCceeEEEeC--CeEEEEecC-CceEEEEEecCC
Q 044903 326 LLKGARHAAAGG--GRVCAVCEN-GGGIVVVDVKAA 358 (387)
Q Consensus 326 ~~~~~~~~~~~~--~~l~v~gg~-~~~i~v~d~~~~ 358 (387)
.+..+.+++.+ |.|+..|.- ...|+||++.++
T Consensus 434 -~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 434 -EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred -CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 22345566665 889888764 478999988866
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=92.34 E-value=8.2 Score=34.92 Aligned_cols=124 Identities=14% Similarity=0.053 Sum_probs=70.5
Q ss_pred EECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903 250 GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 250 ~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~ 328 (387)
..+..=-+.|+-+..+..||..+..=..+... ..+. .++.. ......+-|+-++.|.+||+.+.. .+.......
T Consensus 62 F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth-~~~i--~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d~~k 136 (323)
T KOG1036|consen 62 FADESTIVTGGLDGQVRRYDLNTGNEDQIGTH-DEGI--RCIEYSYEVGCVISGSWDKTIKFWDPRNKV--VVGTFDQGK 136 (323)
T ss_pred ccCCceEEEeccCceEEEEEecCCcceeeccC-CCce--EEEEeeccCCeEEEcccCccEEEEeccccc--cccccccCc
Confidence 33433334555567899999988765555431 1111 12221 112345666778899999997621 111111111
Q ss_pred CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE-cCCCCceeeEEEecc
Q 044903 329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHILP 381 (387)
Q Consensus 329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~-~~~~~~~~~~~~~~~ 381 (387)
...+....|..+|+|..+..+.+||..+...+. +. .-+-.++..+|..+|
T Consensus 137 -kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 137 -KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVP 187 (323)
T ss_pred -eEEEEeccCCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEec
Confidence 344556667777887889999999999652221 22 334445667777777
No 128
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.25 E-value=6.5 Score=34.64 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=77.6
Q ss_pred CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeecc-ccccCCCCCcEE
Q 044903 213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMR-EGMVRGWRGPVA 291 (387)
Q Consensus 213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~ 291 (387)
...|-.+|..|++ =..--.++.+.- ..-+.-+|++..+. ++..+.-.|+.+ ...+. ..+|......++
T Consensus 164 d~tVRLWD~rTgt----~v~sL~~~s~Vt----SlEvs~dG~ilTia-~gssV~Fwdaks--f~~lKs~k~P~nV~SASL 232 (334)
T KOG0278|consen 164 DKTVRLWDHRTGT----EVQSLEFNSPVT----SLEVSQDGRILTIA-YGSSVKFWDAKS--FGLLKSYKMPCNVESASL 232 (334)
T ss_pred CCceEEEEeccCc----EEEEEecCCCCc----ceeeccCCCEEEEe-cCceeEEecccc--ccceeeccCccccccccc
Confidence 3467778888876 322222222221 22234467766552 223444445432 22222 113333222222
Q ss_pred EEeCCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCceeEE--EeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 292 AMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 292 ~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
--+..+|+.|+++..++.||..++. ++... ....++.-|+ .-+|.+|..|..++.|-+|.+..+...+.|.-
T Consensus 233 -~P~k~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~~~ 307 (334)
T KOG0278|consen 233 -HPKKEFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLWKC 307 (334)
T ss_pred -cCCCceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhccc
Confidence 2244689999999999999998873 33331 2222232233 45999999988888888888776555567774
No 129
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.37 E-value=5 Score=33.15 Aligned_cols=76 Identities=8% Similarity=0.085 Sum_probs=46.6
Q ss_pred EEEECCEEEEEeeeC---C--eEEEEECCCCce-eeccccccCC--CCCcEE-EEeCCeEEEEeC--CC--CeEEEEe--
Q 044903 248 AVGWKGKLCLVNVKG---A--EGAVYDVVANTW-DDMREGMVRG--WRGPVA-AMDEEVLYGIDE--NS--CTLSKYD-- 312 (387)
Q Consensus 248 ~v~~~g~lyv~gg~~---~--~i~~yD~~~~~W-~~~~~~~~~~--~~~~~~-~~~~g~ly~~g~--~~--~~v~~yd-- 312 (387)
+|.++|.+|.++... . .|.+||+.+++. +.++.+.... .....+ ++.+++|-++.. .. -+||+-+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 367899999987665 1 699999999999 6665321111 112233 234677777742 12 2355544
Q ss_pred -CCCCceEEccc
Q 044903 313 -EVMDDWKEVVK 323 (387)
Q Consensus 313 -~~~~~W~~v~~ 323 (387)
....+|+++-.
T Consensus 81 ~~~~~SWtK~~~ 92 (164)
T PF07734_consen 81 GYGKESWTKLFT 92 (164)
T ss_pred ccCcceEEEEEE
Confidence 23779999764
No 130
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.19 E-value=15 Score=35.64 Aligned_cols=180 Identities=13% Similarity=0.033 Sum_probs=87.3
Q ss_pred CCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc
Q 044903 163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 163 ~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~ 242 (387)
...++++|.....=+.+..-...-....-..-+.+|+... ... ....++++|+.+++ .+.+...+....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s-~~~-----g~~~i~~~dl~~g~----~~~l~~~~g~~~- 249 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMS-YAN-----GRPRVYLLDLETGQ----RELVGNFPGMTF- 249 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEE-ecC-----CCCEEEEEECCCCc----EEEeecCCCccc-
Confidence 4678888876554344432211111111122233443332 211 12478999999988 777765443211
Q ss_pred ccceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCc
Q 044903 243 REAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSKYDEVMDD 317 (387)
Q Consensus 243 ~~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--~~v~~yd~~~~~ 317 (387)
.....-+|+ |++..... ..++.+|++++.-+.+....... ..+...-.+.+|++..... ..|+++|.++..
T Consensus 250 ---~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 250 ---APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAID-TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred ---CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCcc-CceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 122233554 43332222 56888899888766664321111 1122222334455544222 368999988876
Q ss_pred eEEccccccccCceeEEEeCCeEEEEecC--CceEEEEEecC
Q 044903 318 WKEVVKSDLLKGARHAAAGGGRVCAVCEN--GGGIVVVDVKA 357 (387)
Q Consensus 318 W~~v~~~~~~~~~~~~~~~~~~l~v~gg~--~~~i~v~d~~~ 357 (387)
.+.+..............-+..|++.... ...++++|...
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 66654321111112222223344444322 25688888753
No 131
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.98 E-value=15 Score=35.22 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=60.8
Q ss_pred eEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC-----ceeeccccccCCCCCcEEE-EeCCeEEEEeC
Q 044903 230 WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-----TWDDMREGMVRGWRGPVAA-MDEEVLYGIDE 303 (387)
Q Consensus 230 W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~-----~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~ 303 (387)
|..+..-..... .......+|.+++++..+ .+..-+-.-. .|.+++.. ..+..-..++ ..++.+++.|
T Consensus 272 W~~~~~~~~~~l---~~v~~~~dg~l~l~g~~G-~l~~S~d~G~~~~~~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G- 345 (398)
T PLN00033 272 WQPHNRASARRI---QNMGWRADGGLWLLTRGG-GLYVSKGTGLTEEDFDFEEADIK-SRGFGILDVGYRSKKEAWAAG- 345 (398)
T ss_pred eEEecCCCccce---eeeeEcCCCCEEEEeCCc-eEEEecCCCCcccccceeecccC-CCCcceEEEEEcCCCcEEEEE-
Confidence 887763322211 112223578888886544 2333222333 34544321 1111111222 3356788887
Q ss_pred CCCeEEEEeCCCCceEEcccccccc-CceeEE-EeCCeEEEEecCCceEEE
Q 044903 304 NSCTLSKYDEVMDDWKEVVKSDLLK-GARHAA-AGGGRVCAVCENGGGIVV 352 (387)
Q Consensus 304 ~~~~v~~yd~~~~~W~~v~~~~~~~-~~~~~~-~~~~~l~v~gg~~~~i~v 352 (387)
..|.+++-....+.|+.+....... .-+.+. ..+++.|+.| .++.|+.
T Consensus 346 ~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 346 GSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred CCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 4677888888889999987433332 234444 3458999994 4344443
No 132
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=90.84 E-value=12 Score=33.75 Aligned_cols=189 Identities=14% Similarity=0.118 Sum_probs=106.3
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC----CCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEE
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP----ELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKW 219 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~----~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vy 219 (387)
-.+..+..||.+ +...+|+..++.=.-.. .++....+.+++. +++.-.+.|..+ .+.-.+
T Consensus 107 PSg~~VAcGGLd-------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalW 171 (343)
T KOG0286|consen 107 PSGNFVACGGLD-------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALW 171 (343)
T ss_pred CCCCeEEecCcC-------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEE
Confidence 467788888854 45688988865333221 2233334444443 344444443322 255677
Q ss_pred eCCCCccccCeEEcCCCCCCccccccee--EEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCC
Q 044903 220 DLMNGEKNSRWEKTGELKDGRFSREAID--AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEE 296 (387)
Q Consensus 220 d~~t~~~~~~W~~~~~~~~~~~~~~~~~--~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g 296 (387)
|.++.+ =... +. . ...+..+ ....+++.|+-|+.+.....+|.....-.+.=.+-... -.++. .-+|
T Consensus 172 Die~g~----~~~~--f~-G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD--INsv~ffP~G 241 (343)
T KOG0286|consen 172 DIETGQ----QTQV--FH-G-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD--INSVRFFPSG 241 (343)
T ss_pred Ecccce----EEEE--ec-C-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc--cceEEEccCC
Confidence 777776 1111 00 0 0000000 01116788888888777777787666443321111111 11222 3356
Q ss_pred eEEEEeCCCCeEEEEeCCCCceEEcccccc-ccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 297 VLYGIDENSCTLSKYDEVMDDWKEVVKSDL-LKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 297 ~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~-~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.-|..|.+++....||+..+.=..+-..+. ..+ .-..+...|++++.|..+.++.|||.-..
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 677788788899999998875444433322 222 23345678999999888999999998865
No 133
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=90.69 E-value=4.8 Score=36.11 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=40.4
Q ss_pred cCCCCCCcccccceeEEE--ECCE--EEEEeeeC-------------------CeEEEEECCCCceeecc-ccccCCCCC
Q 044903 233 TGELKDGRFSREAIDAVG--WKGK--LCLVNVKG-------------------AEGAVYDVVANTWDDMR-EGMVRGWRG 288 (387)
Q Consensus 233 ~~~~~~~~~~~~~~~~v~--~~g~--lyv~gg~~-------------------~~i~~yD~~~~~W~~~~-~~~~~~~~~ 288 (387)
+.++|.+|++ |..-+ -.|| ..++||+. ..++..|++-+..+.-. +.+..|...
T Consensus 81 vGdvP~aRYG---Ht~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF 157 (337)
T PF03089_consen 81 VGDVPEARYG---HTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF 157 (337)
T ss_pred cCCCCccccc---ceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEE
Confidence 4577887766 54433 3444 44556653 34555566655544221 124455555
Q ss_pred cEEEEeCCeEEEEeCC
Q 044903 289 PVAAMDEEVLYGIDEN 304 (387)
Q Consensus 289 ~~~~~~~g~ly~~g~~ 304 (387)
+.+.+.++.+|++||.
T Consensus 158 Hvslar~D~VYilGGH 173 (337)
T PF03089_consen 158 HVSLARNDCVYILGGH 173 (337)
T ss_pred EEEEecCceEEEEccE
Confidence 6666778899999973
No 134
>smart00284 OLF Olfactomedin-like domains.
Probab=90.52 E-value=12 Score=33.33 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=86.3
Q ss_pred ceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCC------------ceeeeEEeeCCEEEEEecCCC
Q 044903 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP------------RRWCAAGYSRGAVYVASGIGS 206 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~------------r~~~~~~~~~~~iyv~GG~~~ 206 (387)
|...++.+|.+|.--. ....+..||..+++-.....+|.+ -.....++-.+-|+|+=....
T Consensus 76 GtG~VVYngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~ 148 (255)
T smart00284 76 GTGVVVYNGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ 148 (255)
T ss_pred cccEEEECceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC
Confidence 4567888999988533 236789999999976533223321 123445566666777633322
Q ss_pred CCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccc
Q 044903 207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGM 282 (387)
Q Consensus 207 ~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~ 282 (387)
. . ..-.+-..|+.+-+..-+|..- .+... ...+.++=|.||++.... ....+||+.+++=..+...+
T Consensus 149 ~--~-g~ivvSkLnp~tL~ve~tW~T~--~~k~s----a~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f 219 (255)
T smart00284 149 N--A-GKIVISKLNPATLTIENTWITT--YNKRS----ASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPF 219 (255)
T ss_pred C--C-CCEEEEeeCcccceEEEEEEcC--CCccc----ccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeee
Confidence 0 0 1112233444432211127662 22222 133455568899986422 44678999887533333223
Q ss_pred cCCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 044903 283 VRGWRGPVAA---MDEEVLYGIDENSCTLSKYDEV 314 (387)
Q Consensus 283 ~~~~~~~~~~---~~~g~ly~~g~~~~~v~~yd~~ 314 (387)
+......++. -.+.+||+. ++|.+..||+.
T Consensus 220 ~n~y~~~s~l~YNP~d~~LY~w--dng~~l~Y~v~ 252 (255)
T smart00284 220 ENMYEYISMLDYNPNDRKLYAW--NNGHLVHYDIA 252 (255)
T ss_pred ccccccceeceeCCCCCeEEEE--eCCeEEEEEEE
Confidence 3333333443 235689988 47888888864
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=90.51 E-value=13 Score=36.04 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=55.6
Q ss_pred eCCeEEEEECCCC----ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe
Q 044903 261 KGAEGAVYDVVAN----TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG 336 (387)
Q Consensus 261 ~~~~i~~yD~~~~----~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~ 336 (387)
+...+..||.... .|.+.-..+. ++.+..-.+..|++--|.+.+|..||...++=+.-..-..+. ...++.-
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~---~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl-stvaf~~ 260 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPC---RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL-STVAFSE 260 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCc---CcceecCCccceEEEecccceEEEeecccccccceeeecCCc-ceeeecC
Confidence 3346677887644 4554433222 234455556778887788999999999755433211111111 1123344
Q ss_pred CCeEEEEecCCceEEEEEecCC
Q 044903 337 GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 337 ~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
+|.++++|...+.++.||+...
T Consensus 261 ~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 261 CGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred CceEEEeecCCceEEEEecccC
Confidence 6777778666789999999854
No 136
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.51 E-value=18 Score=35.13 Aligned_cols=175 Identities=3% Similarity=-0.075 Sum_probs=96.0
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
.++|++|..+++=+.+...+..-.......-+.+|.+.-... ....++++|..+++ ++.+...+...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~dl~~g~----~~~LT~~~~~d--- 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK------GQPDIYLYDTNTKT----LTQITNYPGID--- 279 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC------CCcEEEEEECCCCc----EEEcccCCCcc---
Confidence 368888988887777765322111122222234565543321 13478999999998 98887544211
Q ss_pred cceeEEEECC-EEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--------CeEEEEe
Q 044903 244 EAIDAVGWKG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------CTLSKYD 312 (387)
Q Consensus 244 ~~~~~v~~~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--------~~v~~yd 312 (387)
......-|| +||+..... ..++++|+.+++.+.+... +.......-.|+.|.+..... ..|+++|
T Consensus 280 -~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d 355 (419)
T PRK04043 280 -VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS 355 (419)
T ss_pred -CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence 111222244 577665433 5789999998888666431 111222223344454443221 3699999
Q ss_pred CCCCceEEccccccccCceeEEEeCCe-EEEEecC--CceEEEEEecC
Q 044903 313 EVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKA 357 (387)
Q Consensus 313 ~~~~~W~~v~~~~~~~~~~~~~~~~~~-l~v~gg~--~~~i~v~d~~~ 357 (387)
+++..++.+..... .......-+|+ |++.... ...++++++..
T Consensus 356 ~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 356 TNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCCeEECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 99998888765321 11223344555 4444322 24577777773
No 137
>PRK00178 tolB translocation protein TolB; Provisional
Probab=90.48 E-value=18 Score=35.09 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=71.8
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEee-eC-CeEEEEECCCCceeeccccccCCCCCcE
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..++++|..+++ -+.+...+.... .....-+|+ |++... .+ ..++++|+.++..+.+....... ..+.
T Consensus 223 ~~l~~~~l~~g~----~~~l~~~~g~~~----~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~-~~~~ 293 (430)
T PRK00178 223 PRIFVQNLDTGR----REQITNFEGLNG----APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAID-TEPF 293 (430)
T ss_pred CEEEEEECCCCC----EEEccCCCCCcC----CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCc-CCeE
Confidence 478899999888 666654332110 112222454 443322 22 57899999998887765321111 1122
Q ss_pred EEEeCCeEEEEeCCC--CeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC--CceEEEEEecCC
Q 044903 291 AAMDEEVLYGIDENS--CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~g~ly~~g~~~--~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~--~~~i~v~d~~~~ 358 (387)
..-.+.+|++..... ..|+.+|.++..++.+..............-++.|++.... ...++++|..++
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 222344566665333 35899999888887764322111111122234455555432 246888888754
No 138
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.47 E-value=9.5 Score=35.47 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=36.3
Q ss_pred eCCeEEEEeC--CC-------CeEEEEeCCCCceEEccccccccCceeEEEeCCe--EEEEecCCceEEEEEecCC
Q 044903 294 DEEVLYGIDE--NS-------CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGR--VCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 294 ~~g~ly~~g~--~~-------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~--l~v~gg~~~~i~v~d~~~~ 358 (387)
..++||++-. .. ..||+||+++++=..-.+++......++ .-+++ ||.+..++..++++|..++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~V-sqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAV-SQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEE-ESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEE-ccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 3578998741 11 2599999999843332222222222222 33444 4445456788999999965
No 139
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.32 E-value=19 Score=35.07 Aligned_cols=177 Identities=7% Similarity=-0.029 Sum_probs=93.6
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|..+++-+.+...+..........-+.+|++....+. ...+.++|..+++ -+.+..-....
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~----~~~lt~~~~~~--- 294 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ----LTRLTNHFGID--- 294 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCC----eEECccCCCCc---
Confidence 5689999999888777655422111122222445655433211 2478899998887 66665322111
Q ss_pred cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W 318 (387)
......-+|+ |++..... ..++.+|..+++.+.+...-.. ...+...-.++.|++.....+ .|++||+++...
T Consensus 295 -~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~-~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 295 -TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY-NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 1112223554 44443222 4688888888877766421111 112222233556666654333 599999988887
Q ss_pred EEccccccccCceeEEEeCCeEEEEecC---CceEEEEEecC
Q 044903 319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKA 357 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~---~~~i~v~d~~~ 357 (387)
+.+...... ... ....+|+.+++... ...++++|...
T Consensus 373 ~~Lt~~~~~-~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 373 RTLTPGSLD-ESP-SFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EECCCCCCC-CCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 766532211 112 33445654444332 35678888863
No 140
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.25 E-value=6.3 Score=34.98 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=66.7
Q ss_pred eeEEEECC-E-EEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceE
Q 044903 246 IDAVGWKG-K-LCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD--DWK 319 (387)
Q Consensus 246 ~~~v~~~g-~-lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~--~W~ 319 (387)
...|++++ + +.++|.+...+.+-|+.++ .|+.+-..-. ..++.++|+. .++|...+.++..+.++. -|.
T Consensus 14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~Ri----E~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~ 88 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRI----ECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWN 88 (354)
T ss_pred CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCcee----eeeeEEECCE-EEEEEccCcEEEEEecchhheee
Confidence 44566653 3 4445555677888899877 6987743222 2244556664 778888888888888775 465
Q ss_pred EccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeE
Q 044903 320 EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~ 365 (387)
-+.. ........+...+|-| -.|..+++.+++|+.+ .+..|+
T Consensus 89 f~~~-~~vk~~a~~d~~~glI-ycgshd~~~yalD~~~--~~cVyk 130 (354)
T KOG4649|consen 89 FVIL-ETVKVRAQCDFDGGLI-YCGSHDGNFYALDPKT--YGCVYK 130 (354)
T ss_pred eeeh-hhhccceEEcCCCceE-EEecCCCcEEEecccc--cceEEe
Confidence 4332 2222233333334444 4456778888888884 345555
No 141
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=90.19 E-value=16 Score=34.01 Aligned_cols=147 Identities=10% Similarity=0.136 Sum_probs=77.3
Q ss_pred CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCcee--eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW--CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN 223 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t 223 (387)
++.+.+.||.+ +..++++..+..|-- .+...... ...-..++.+.+.|+... .+.++...+
T Consensus 75 ~~~l~aTGGgD-------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG--------~v~v~~~st 137 (399)
T KOG0296|consen 75 NNNLVATGGGD-------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG--------KVLVFKVST 137 (399)
T ss_pred CCceEEecCCC-------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc--------cEEEEEccc
Confidence 56778888853 345888888887543 12211111 222234666777776644 566666666
Q ss_pred CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeC
Q 044903 224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE 303 (387)
Q Consensus 224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~ 303 (387)
+... |....++..-..- ..|. .+.+.+.|.....+++|....+.=.++-.+.... ....-...+|+..+.+.
T Consensus 138 g~~~--~~~~~e~~dieWl-~WHp----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~-ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 138 GGEQ--WKLDQEVEDIEWL-KWHP----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP-CTCGEFIPDGKRILTGY 209 (399)
T ss_pred CceE--EEeecccCceEEE-Eecc----cccEEEeecCCCcEEEEECCCcceeeEecCCCCC-cccccccCCCceEEEEe
Confidence 5533 6654322211100 0011 2345555555567788876664222221111111 00011134567777777
Q ss_pred CCCeEEEEeCCCCc
Q 044903 304 NSCTLSKYDEVMDD 317 (387)
Q Consensus 304 ~~~~v~~yd~~~~~ 317 (387)
.++.|.+||+++..
T Consensus 210 ~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQ 223 (399)
T ss_pred cCceEEEEecCCCc
Confidence 89999999999873
No 142
>PRK02889 tolB translocation protein TolB; Provisional
Probab=89.68 E-value=21 Score=34.68 Aligned_cols=176 Identities=9% Similarity=-0.035 Sum_probs=87.2
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|..+++=+.+...+......+...-+.+|++....+. ...++.+|..+.. .+.+..-...
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~---- 285 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSG----LRRLTQSSGI---- 285 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC------CceEEEEECCCCC----cEECCCCCCC----
Confidence 4689999988876666544321111111222345655433221 2467888887776 6665432111
Q ss_pred cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W 318 (387)
.......-||+ |++.+... ..++.+|..++..+.+..... ....+...-.|..|++.....+ .|++||..+...
T Consensus 286 ~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 286 DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS-YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC-CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 11122233554 54443222 467777777766665532110 0111222223445555543333 599999988877
Q ss_pred EEccccccccCceeEEEeCCeEEEEecC---CceEEEEEec
Q 044903 319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVK 356 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~---~~~i~v~d~~ 356 (387)
+.+...... ......-+|+.+++... ...++++|..
T Consensus 365 ~~lt~~~~~--~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 365 TALTDTTRD--ESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEccCCCCc--cCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 766432111 12233445655555432 2346777775
No 143
>smart00284 OLF Olfactomedin-like domains.
Probab=89.64 E-value=15 Score=32.87 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=101.1
Q ss_pred CCEEEEEcCccCCCCCCCCccEEEe----CCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903 146 SGKLILLAATTHNFNPALTRPLIFD----PICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL 221 (387)
Q Consensus 146 ~~~l~v~GG~~~~~~~~~~~~~vyd----p~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~ 221 (387)
++++|++.+... ..+.+..|. ....++.+.-.+|.+-...+.++.+|.+|.--. ....+..||+
T Consensus 34 ~~~~wv~~~~~~----~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~--------~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNTR----VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF--------NSHDICRFDL 101 (255)
T ss_pred CceEEEEccccC----CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec--------CCccEEEEEC
Confidence 467888765321 123344443 233344333345666667778889999987532 2347899999
Q ss_pred CCCccccCeEEcCCCCCCccc---------ccceeEEEECCEEEEE---eeeCCeE--EEEECCC----Cceeecccccc
Q 044903 222 MNGEKNSRWEKTGELKDGRFS---------REAIDAVGWKGKLCLV---NVKGAEG--AVYDVVA----NTWDDMREGMV 283 (387)
Q Consensus 222 ~t~~~~~~W~~~~~~~~~~~~---------~~~~~~v~~~g~lyv~---gg~~~~i--~~yD~~~----~~W~~~~~~~~ 283 (387)
.+.+ =.....+|...+. -.....++-.+-|.++ ......| -..|+.+ ++|.+- .+
T Consensus 102 ~t~~----v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~---~~ 174 (255)
T smart00284 102 TTET----YQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITT---YN 174 (255)
T ss_pred CCCc----EEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcC---CC
Confidence 9998 4433334432111 0112334444445554 2221222 3456643 478763 22
Q ss_pred CCCCCcEEEEeCCeEEEEeC-C--CC-eEEEEeCCCCceEEcccccc--ccCceeEEEe---CCeEEEEecCCceEEEEE
Q 044903 284 RGWRGPVAAMDEEVLYGIDE-N--SC-TLSKYDEVMDDWKEVVKSDL--LKGARHAAAG---GGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 284 ~~~~~~~~~~~~g~ly~~g~-~--~~-~v~~yd~~~~~W~~v~~~~~--~~~~~~~~~~---~~~l~v~gg~~~~i~v~d 354 (387)
....+.+-.+| |.||++.. . .. -.++||..+.+=..+ ..|. ......+..+ +.+||+. +++....||
T Consensus 175 k~sa~naFmvC-GvLY~~~s~~~~~~~I~yayDt~t~~~~~~-~i~f~n~y~~~s~l~YNP~d~~LY~w--dng~~l~Y~ 250 (255)
T smart00284 175 KRSASNAFMIC-GILYVTRSLGSKGEKVFYAYDTNTGKEGHL-DIPFENMYEYISMLDYNPNDRKLYAW--NNGHLVHYD 250 (255)
T ss_pred cccccccEEEe-eEEEEEccCCCCCcEEEEEEECCCCcccee-eeeeccccccceeceeCCCCCeEEEE--eCCeEEEEE
Confidence 22234455566 68999974 1 12 278899988652222 2222 2233445544 6788888 566677777
Q ss_pred ec
Q 044903 355 VK 356 (387)
Q Consensus 355 ~~ 356 (387)
+.
T Consensus 251 v~ 252 (255)
T smart00284 251 IA 252 (255)
T ss_pred EE
Confidence 65
No 144
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.41 E-value=16 Score=34.86 Aligned_cols=132 Identities=12% Similarity=0.214 Sum_probs=69.5
Q ss_pred eeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCe
Q 044903 188 WCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAE 264 (387)
Q Consensus 188 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~ 264 (387)
+.+++.. +|-|+..|-.+. .+.+||..... .++.+|..-. ...++.+ ||...+.+..+..
T Consensus 350 ~ts~~fHpDgLifgtgt~d~--------~vkiwdlks~~------~~a~Fpght~---~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDG--------VVKIWDLKSQT------NVAKFPGHTG---PVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred eEEeeEcCCceEEeccCCCc--------eEEEEEcCCcc------ccccCCCCCC---ceeEEEeccCceEEEEEecCCe
Confidence 4444444 455665554432 67788887765 3333332111 1223332 4444444444456
Q ss_pred EEEEECCCCc-eeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCC
Q 044903 265 GAVYDVVANT-WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG 338 (387)
Q Consensus 265 i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~ 338 (387)
+..+|+...+ ..++.. .......+.... .|+...+++++-.|+.|+-+++.|+++.......+....|..+.
T Consensus 413 V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred EEEEEehhhcccceeec--cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecc
Confidence 8999997553 333331 111111122221 24555555555567888889999999988776665544555543
No 145
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.26 E-value=17 Score=33.02 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=72.5
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCe---EEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV---LYGIDENSCTLSKYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~---ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~ 328 (387)
+|.....|+.+..+..+|+.+++=.++.. ..+- ..++-.+++. +.+.|.-+.+|..||+... +.+..+..+.
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~--Hd~p-vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LPe 157 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAA--HDAP-VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLPE 157 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeee--cccc-eeEEEEecCCCcceeEecccccceeecccCCC--Ceeeeeeccc
Confidence 45555566667889999999997766652 2211 1122222332 4455666778999998643 2222222222
Q ss_pred CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE-cCCCCceeeEEEecc
Q 044903 329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHILP 381 (387)
Q Consensus 329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~-~~~~~~~~~~~~~~~ 381 (387)
.+-++-+...+.|++-.+..|.+|+..+. +.+.+. .-|..++..+|..++
T Consensus 158 -RvYa~Dv~~pm~vVata~r~i~vynL~n~--~te~k~~~SpLk~Q~R~va~f~ 208 (347)
T KOG0647|consen 158 -RVYAADVLYPMAVVATAERHIAVYNLENP--PTEFKRIESPLKWQTRCVACFQ 208 (347)
T ss_pred -eeeehhccCceeEEEecCCcEEEEEcCCC--cchhhhhcCcccceeeEEEEEe
Confidence 23345556678888777889999999833 333443 556667777776654
No 146
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.06 E-value=29 Score=35.54 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=56.1
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEEC--CEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEE
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWK--GKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVA 291 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~--g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~ 291 (387)
+|-.+|...-. ..+... -|.+. .+..+.+| |.+.+.|... ..|.+.+.++++=-.+-. |..+|..
T Consensus 415 tVRAwDlkRYr---NfRTft-~P~p~----QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs----GHEgPVs 482 (893)
T KOG0291|consen 415 TVRAWDLKRYR---NFRTFT-SPEPI----QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS----GHEGPVS 482 (893)
T ss_pred eEEeeeecccc---eeeeec-CCCce----eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc----CCCCcce
Confidence 56677776544 133333 22222 25666777 8898888776 778888888886554432 2222222
Q ss_pred ---EEeCCeEEEEeCCCCeEEEEeCCCCceEEccccc
Q 044903 292 ---AMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD 325 (387)
Q Consensus 292 ---~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~ 325 (387)
.-..+.+.+-+..+.+|.+||.-. +|..+.+.+
T Consensus 483 ~l~f~~~~~~LaS~SWDkTVRiW~if~-s~~~vEtl~ 518 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGSWDKTVRIWDIFS-SSGTVETLE 518 (893)
T ss_pred eeEEccccCeEEeccccceEEEEEeec-cCceeeeEe
Confidence 112344555666678899988743 344444443
No 147
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.97 E-value=33 Score=36.06 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=78.1
Q ss_pred eeEEeeCCEEEEEecCCCCC-CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-CeEE
Q 044903 189 CAAGYSRGAVYVASGIGSQF-SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGA 266 (387)
Q Consensus 189 ~~~~~~~~~iyv~GG~~~~~-~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-~~i~ 266 (387)
.+..+.+++|||-+...+.+ .......+..||..|++.. |+.-..-|... ...-+|..|..|+-. ....
T Consensus 310 s~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~--W~~~~g~p~~~-------~~~~~g~~~~~gg~n~W~~~ 380 (764)
T TIGR03074 310 SPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV--WAWDPGNPDPT-------APPAPGETYTRNTPNSWSVA 380 (764)
T ss_pred cCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe--eEEecCCCCcc-------cCCCCCCEeccCCCCccCce
Confidence 34466788877743322211 1123457899999999976 65443212111 111256677755433 4677
Q ss_pred EEECCCCce-eeccccccCCC---CCcEEEEeCCeEEEEeCCCCe-EEEEeC-CCCceEEccccccccCceeEEEe---C
Q 044903 267 VYDVVANTW-DDMREGMVRGW---RGPVAAMDEEVLYGIDENSCT-LSKYDE-VMDDWKEVVKSDLLKGARHAAAG---G 337 (387)
Q Consensus 267 ~yD~~~~~W-~~~~~~~~~~~---~~~~~~~~~g~ly~~g~~~~~-v~~yd~-~~~~W~~v~~~~~~~~~~~~~~~---~ 337 (387)
.||++++.- --.....+.-+ +.+..-...+.|+.++-+.|+ .|.|.. ..+.|.-=.. ....++.+ +
T Consensus 381 s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~-----~~p~L~d~~~~~ 455 (764)
T TIGR03074 381 SYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVP-----AQPSLVDLPDAD 455 (764)
T ss_pred EEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCcccccccc-----CCceEEeeecCC
Confidence 889887742 11111111111 001111223445555544443 344433 3344532111 11122221 5
Q ss_pred Ce---EEEEecCCceEEEEEecCCCCCceeEE
Q 044903 338 GR---VCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 338 ~~---l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
|+ +++.+..++.++++|-.++ .-+|.+
T Consensus 456 G~~~~~v~~~~K~G~~~vlDr~tG--~~l~~~ 485 (764)
T TIGR03074 456 GTTVPALVAPTKQGQIYVLDRRTG--EPIVPV 485 (764)
T ss_pred CcEeeEEEEECCCCEEEEEECCCC--CEEeec
Confidence 52 6666667788999998854 245653
No 148
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.93 E-value=20 Score=37.57 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=66.6
Q ss_pred eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc-cc---ccc----------------eeE
Q 044903 189 CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR-FS---REA----------------IDA 248 (387)
Q Consensus 189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~-~~---~~~----------------~~~ 248 (387)
.+-.+++++||+.... ..+..+|..|++.. |+.-...+... .. ++. ...
T Consensus 188 ~TPlvvgg~lYv~t~~---------~~V~ALDa~TGk~l--W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p 256 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH---------NKVIALDAATGKEK--WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAP 256 (764)
T ss_pred cCCEEECCEEEEECCC---------CeEEEEECCCCcEE--EEEcCCCCcccccccccccceEEecCCcccccccccccc
Confidence 4556789999997432 36788899988876 88765443211 00 000 001
Q ss_pred EEECCEEEEEeeeCCeEEEEECCCC--ceeecc-------ccc---cCCC--CCcEEEEeCCeEEEEeC---------CC
Q 044903 249 VGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMR-------EGM---VRGW--RGPVAAMDEEVLYGIDE---------NS 305 (387)
Q Consensus 249 v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~-------~~~---~~~~--~~~~~~~~~g~ly~~g~---------~~ 305 (387)
+.++++||+-.. +..+.++|.+++ .|..-. ..+ +.+. ...+.++.++.+++-+. -+
T Consensus 257 ~~~~~rV~~~T~-Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 257 ADCARRIILPTS-DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS 335 (764)
T ss_pred cccCCEEEEecC-CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Confidence 235567776433 346788888766 464211 111 1111 12233456777776321 14
Q ss_pred CeEEEEeCCCC--ceEE
Q 044903 306 CTLSKYDEVMD--DWKE 320 (387)
Q Consensus 306 ~~v~~yd~~~~--~W~~ 320 (387)
|.|..||.++. .|+-
T Consensus 336 G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAW 352 (764)
T ss_pred cEEEEEECCCCcEeeEE
Confidence 67999998876 4764
No 149
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=88.70 E-value=22 Score=33.57 Aligned_cols=102 Identities=11% Similarity=-0.047 Sum_probs=55.7
Q ss_pred eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEE-eCCEEEEEcCccC--CCCCCCCccEEEeCCCCce
Q 044903 100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LSGKLILLAATTH--NFNPALTRPLIFDPICRTW 176 (387)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~GG~~~--~~~~~~~~~~vydp~t~~W 176 (387)
..++++|..+.+-...-+.... ++...+ -+..+|+.-.+-. ......+.+.+||+.|.+=
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-----------------P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-----------------PNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-----------------CceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 6789999887543221111111 122233 3456787765211 1123456789999999886
Q ss_pred ee-CCCCCCCce-------eeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903 177 TF-GPELVTPRR-------WCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE 225 (387)
Q Consensus 177 ~~-l~~~~~~r~-------~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~ 225 (387)
.. ++.-+.||. .++...-+..+||.. ......+.+.|..+++
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-------~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-------FSPSPAVGVVDLEGKA 139 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEec-------CCCCCEEEEEECCCCc
Confidence 54 332233341 233333344678762 1224588999999887
No 150
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.67 E-value=22 Score=33.68 Aligned_cols=172 Identities=14% Similarity=0.106 Sum_probs=90.8
Q ss_pred cEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccccc
Q 044903 166 PLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE 244 (387)
Q Consensus 166 ~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~ 244 (387)
++.+|..|..-+.+=+-..+-+..+++-+ ++.-+|.|+.+. .+..+|...+... .|+-+.. +..
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr--------~i~~wdlDgn~~~-~W~gvr~---~~v--- 357 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR--------TIIMWDLDGNILG-NWEGVRD---PKV--- 357 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC--------cEEEecCCcchhh-ccccccc---cee---
Confidence 55666666554432211112222233332 566688887654 4555555543311 2766542 221
Q ss_pred ceeEEEECCE-EEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEcc
Q 044903 245 AIDAVGWKGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVV 322 (387)
Q Consensus 245 ~~~~v~~~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~ 322 (387)
..-++..||+ ++.++ ....+..|+.++..=+.+-. ...+. .+.. .-++++.++.-...++..||.+ .|+.+.
T Consensus 358 ~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lis-e~~~i--ts~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~ 431 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLIS-EEQPI--TSFSISKDGKLALVNLQDQEIHLWDLE--ENKLVR 431 (519)
T ss_pred EEEEEcCCCcEEEEEe-cccceeeechhhhhhhcccc-ccCce--eEEEEcCCCcEEEEEcccCeeEEeecc--hhhHHH
Confidence 1345567777 44443 44678888887665442211 11111 1222 3467788887677889999998 566655
Q ss_pred ccccc-cCc---eeEEEeCCeEEEEec-CCceEEEEEecCC
Q 044903 323 KSDLL-KGA---RHAAAGGGRVCAVCE-NGGGIVVVDVKAA 358 (387)
Q Consensus 323 ~~~~~-~~~---~~~~~~~~~l~v~gg-~~~~i~v~d~~~~ 358 (387)
.-... .+. ..|+..++.-+|..| .+.+|++|+-.++
T Consensus 432 kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 432 KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 33222 222 244554554444444 5788888887754
No 151
>PTZ00421 coronin; Provisional
Probab=88.25 E-value=7.3 Score=38.64 Aligned_cols=105 Identities=5% Similarity=-0.010 Sum_probs=57.3
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeec--ccc-ccCCCC--CcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDM--REG-MVRGWR--GPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS 324 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~--~~~-~~~~~~--~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~ 324 (387)
++.+.+.++.+..+.+||..++..... ... ...+.. -..++.. ++.+++.++.++.|.+||.++..- +...
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l 164 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVI 164 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--EEEE
Confidence 345555566666778888765422110 000 001111 1122222 235677777889999999987642 2222
Q ss_pred ccccCce-e-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903 325 DLLKGAR-H-AAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 325 ~~~~~~~-~-~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
....... . ....+|.+++.|+.++.+.+||+.++
T Consensus 165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg 200 (493)
T PTZ00421 165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200 (493)
T ss_pred cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence 2222222 2 22347888888888889999998754
No 152
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=88.08 E-value=19 Score=32.19 Aligned_cols=128 Identities=9% Similarity=0.076 Sum_probs=82.6
Q ss_pred CEEEEEeeeCCeEEEEECC-CCceeeccccccC--CCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903 253 GKLCLVNVKGAEGAVYDVV-ANTWDDMREGMVR--GWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 253 g~lyv~gg~~~~i~~yD~~-~~~W~~~~~~~~~--~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~ 328 (387)
|.++.-+|....+.+++.. .++|.-... +.. .+.-.+++- ..|++...+..+..+.+|.-+.+.|+.+..+..+.
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~v-ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTV-LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE 105 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEe-ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc
Confidence 5566777777889999988 678875532 111 111223332 24566666667788999999999999988776666
Q ss_pred CceeEE--EeCCeEEEEecCCceEEEEEecCCCCCceeEE---cCCCCceeeEEEeccccc
Q 044903 329 GARHAA--AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV---DTPLGFEALSVHILPRMS 384 (387)
Q Consensus 329 ~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~---~~~~~~~~~~~~~~~~~~ 384 (387)
.-..++ ..+|..+....++..++++.+.+. ++.+. ..+....+-.|.==|+|+
T Consensus 106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~ded---dEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDED---DEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEEecCC---CcEEEEeeeccccccccEEEEcCCcc
Confidence 544444 457888888889999999998854 45553 444443333333335543
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=88.08 E-value=31 Score=34.76 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=67.2
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcEE
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVA 291 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~ 291 (387)
..+|+|++..+ |-...-++.+.- +.--..+.. +++|+-+|..+ .+-.+|+.+.. =..++..-..-| ++
T Consensus 47 g~IEiwN~~~~-----w~~~~vi~g~~d-rsIE~L~W~e~~RLFS~g~sg-~i~EwDl~~lk~~~~~d~~gg~IW---si 116 (691)
T KOG2048|consen 47 GNIEIWNLSNN-----WFLEPVIHGPED-RSIESLAWAEGGRLFSSGLSG-SITEWDLHTLKQKYNIDSNGGAIW---SI 116 (691)
T ss_pred CcEEEEccCCC-----ceeeEEEecCCC-CceeeEEEccCCeEEeecCCc-eEEEEecccCceeEEecCCCccee---EE
Confidence 47899999987 876654443321 222334444 78888776655 55556654332 111111000001 11
Q ss_pred E-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEE-EEecC-CceEEEEEecCC
Q 044903 292 A-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVC-AVCEN-GGGIVVVDVKAA 358 (387)
Q Consensus 292 ~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~-v~gg~-~~~i~v~d~~~~ 358 (387)
+ ...+....+|+++|.++.++...++-+--..+++-.+..-.+.++.... ++||. ++-|-++|+..+
T Consensus 117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 1 1123445555555555555555554433334444444444555555555 55554 344677776643
No 154
>PRK03629 tolB translocation protein TolB; Provisional
Probab=87.94 E-value=27 Score=33.89 Aligned_cols=176 Identities=9% Similarity=-0.019 Sum_probs=90.5
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|..+++-+.+...+..-.......-+.+|++...... ...++++|..+++ .+.+..-....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~----~~~lt~~~~~~--- 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ----IRQVTDGRSNN--- 289 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCC----EEEccCCCCCc---
Confidence 4688899988887776655432222222222345655433211 1358889999888 77665332111
Q ss_pred cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 044903 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--~~v~~yd~~~~~W 318 (387)
......-+|+ |++..... ..++.+|+.+..-+.+..... ....+...-.|..|++..... ..++++|+++..+
T Consensus 290 -~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 290 -TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred -CceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 1112223554 44333222 467777887776555532111 111122222344555554333 3589999999988
Q ss_pred EEccccccccCceeEEEeCCeEEEEecCC---ceEEEEEec
Q 044903 319 KEVVKSDLLKGARHAAAGGGRVCAVCENG---GGIVVVDVK 356 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~~---~~i~v~d~~ 356 (387)
+.+.... ..... ...-+|+.+++.... ..+++++..
T Consensus 368 ~~Lt~~~-~~~~p-~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 368 QVLTDTF-LDETP-SIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEeCCCC-CCCCc-eECCCCCEEEEEEcCCCceEEEEEECC
Confidence 8766321 11122 234566655554432 335666765
No 155
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.86 E-value=26 Score=33.56 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=92.2
Q ss_pred EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceee-eEEee--CCEEEEEecCCCCCCCCCCceEEE
Q 044903 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWC-AAGYS--RGAVYVASGIGSQFSSDVAKSVEK 218 (387)
Q Consensus 142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~v 218 (387)
+++.+++.++.||.+ ..+.++|+.|.+=.+. +...|... +.+.- -+.+|.++- .+++-+
T Consensus 209 avS~Dgkylatgg~d-------~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~---------Drsvkv 270 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRD-------RHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA---------DRSVKV 270 (479)
T ss_pred EEcCCCcEEEecCCC-------ceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec---------CCceEE
Confidence 445788999999853 3567888877653332 12222211 11111 235565432 234555
Q ss_pred EeCCCCccccCeEEcCCCCCCcccccceeE------EEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE
Q 044903 219 WDLMNGEKNSRWEKTGELKDGRFSREAIDA------VGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA 292 (387)
Q Consensus 219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~------v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~ 292 (387)
|+..... .. . ..++ |.. +.-.++...+||.+.++..|+....+ +.+-.+ . ...--+++
T Consensus 271 w~~~~~s----~v--e----tlyG---Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg-~-~~sidcv~ 334 (479)
T KOG0299|consen 271 WSIDQLS----YV--E----TLYG---HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRG-G-EGSIDCVA 334 (479)
T ss_pred EehhHhH----HH--H----HHhC---CccceeeechhcccceEEeccccceeEEEeccccc-eeeeeC-C-CCCeeeEE
Confidence 5554433 11 1 1111 211 22235666777777777777763322 111110 1 11234677
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceEEcccc-----c---cccC--c-eeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903 293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS-----D---LLKG--A-RHAA-AGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 293 ~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-----~---~~~~--~-~~~~-~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
+++..-|+.|..+|.|..|+.-+++=.-+... | +... . .+++ ..+..|+..|..++.+-+|-+..+
T Consensus 335 ~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 335 FINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 78888899999999999999866532111111 1 1111 1 2333 345566666655555555555533
No 156
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.83 E-value=22 Score=32.70 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=78.5
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMN 223 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t 223 (387)
-++.+++++.. ..++.=.-.=.+|+.+..-.. -........ ++++++++..+. -....|+..
T Consensus 113 ~~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~G~--------~~~s~~~G~ 175 (302)
T PF14870_consen 113 GDGSAELAGDR--------GAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSSRGN--------FYSSWDPGQ 175 (302)
T ss_dssp ETTEEEEEETT----------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTSS--------EEEEE-TT-
T ss_pred CCCcEEEEcCC--------CcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEECccc--------EEEEecCCC
Confidence 45556665532 234444445568988643222 122222333 455555554433 334567777
Q ss_pred CccccCeEEcCCCCCCcccccceeEE-EECCEEEEEeeeCCeEEEEE--CCCCceeeccccc-cCCCCCcEEEEe-CCeE
Q 044903 224 GEKNSRWEKTGELKDGRFSREAIDAV-GWKGKLCLVNVKGAEGAVYD--VVANTWDDMREGM-VRGWRGPVAAMD-EEVL 298 (387)
Q Consensus 224 ~~~~~~W~~~~~~~~~~~~~~~~~~v-~~~g~lyv~gg~~~~i~~yD--~~~~~W~~~~~~~-~~~~~~~~~~~~-~g~l 298 (387)
.. |.........+. ..+. .-++.|+++. .+..+..=| -..++|.+-.... ..++.-..++.. ++.+
T Consensus 176 ~~----w~~~~r~~~~ri----q~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 176 TT----WQPHNRNSSRRI----QSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp SS-----EEEE--SSS-E----EEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred cc----ceEEccCcccee----hhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 77 888764332221 2222 2356777764 444455555 3456888733222 222222233333 4678
Q ss_pred EEEeCCCCeEEEEeCCCCceEEcccccccc-CceeEEE-eCCeEEEEecCC
Q 044903 299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLK-GARHAAA-GGGRVCAVCENG 347 (387)
Q Consensus 299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~-~~~~~~~-~~~~l~v~gg~~ 347 (387)
|+.|+ ++.+++=.-..++|++........ ..+.++. .+++-+|+|.+|
T Consensus 247 wa~gg-~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 247 WAVGG-SGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp EEEES-TT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred EEEeC-CccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 88876 567777777788999987544333 3334443 457999995443
No 157
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.65 E-value=30 Score=33.97 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=74.8
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD 294 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~ 294 (387)
.+.+||...+.. .=+.+....... ...+..-+|.+++.|+.+..+.++|.++.+-...-..-..+. .....-.
T Consensus 226 tiriwd~~~~~~--~~~~l~gH~~~v----~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i-s~~~f~~ 298 (456)
T KOG0266|consen 226 TLRIWDLKDDGR--NLKTLKGHSTYV----TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI-SGLAFSP 298 (456)
T ss_pred eEEEeeccCCCe--EEEEecCCCCce----EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce-EEEEECC
Confidence 678888844420 023333333222 133334467788888888999999998854332211111110 0111223
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceE---Ecccccccc-CceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 295 EEVLYGIDENSCTLSKYDEVMDDWK---EVVKSDLLK-GARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 295 ~g~ly~~g~~~~~v~~yd~~~~~W~---~v~~~~~~~-~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
++.+++.+..++.+.+||..+..-. .+....... -......-+++.++.+..+..+-.||+...
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 5667777777899999999887632 222222221 122333345565566555667777777743
No 158
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=87.46 E-value=14 Score=34.15 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=72.6
Q ss_pred CccEEEeCCCC-----ceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCC
Q 044903 164 TRPLIFDPICR-----TWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD 238 (387)
Q Consensus 164 ~~~~vydp~t~-----~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~ 238 (387)
..+.+|+.... +.+.+......-.-.+.+.+++++.++.|. .+.+|+...++ ++...+.+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~----------~l~v~~l~~~~---~l~~~~~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGN----------KLYVYDLDNSK---TLLKKAFYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETT----------EEEEEEEETTS---SEEEEEEE-B
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecC----------EEEEEEccCcc---cchhhheecc
Confidence 56889988885 555554444333445666778887666553 56677766554 2666665543
Q ss_pred CcccccceeEEEECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEE
Q 044903 239 GRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKY 311 (387)
Q Consensus 239 ~~~~~~~~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~y 311 (387)
+... ....++++.|++-.... -.+..|+.+..+-..+.......+ ..++... ++..++.+...+.+..+
T Consensus 129 ~~~i---~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~-v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 129 PFYI---TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW-VTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp SSSE---EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE-EEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred eEEE---EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc-EEEEEEecCCcEEEEEcCCCeEEEE
Confidence 3322 55667788776543333 445567876666666654322222 2233333 54555555556765544
No 159
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=87.36 E-value=28 Score=33.36 Aligned_cols=136 Identities=12% Similarity=-0.064 Sum_probs=70.1
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
.+++.+|..+++.+++...............+.+|++...... ...++++|..+.. +..+..-....
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g------~~~iy~~d~~~~~----~~~l~~~~~~~--- 324 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG------SPQIYMMDADGGE----VRRLTFRGGYN--- 324 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC------CceEEEEECCCCC----EEEeecCCCCc---
Confidence 5789999999888877543321111111122334554433211 2368888988887 77665221111
Q ss_pred cceeEEEECCEEEEEeeeC---CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCC
Q 044903 244 EAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVM 315 (387)
Q Consensus 244 ~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~ 315 (387)
......-+|+.+++.... ..+..+|+.++.++.+..... ...+.....++.|++.....+ .+++++.+.
T Consensus 325 -~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 325 -ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL--DESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred -cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC--CCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 011223356555554433 478999998877776653211 112333334445555543322 355656544
No 160
>PRK04922 tolB translocation protein TolB; Provisional
Probab=86.69 E-value=32 Score=33.39 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=70.9
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEee-eC-CeEEEEECCCCceeeccccccCCCCCcE
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..++++|..+++ -..+...+... ......-+|+ |++... .+ ..++++|+.++.-+.+....... ..++
T Consensus 228 ~~l~~~dl~~g~----~~~l~~~~g~~----~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~ 298 (433)
T PRK04922 228 SAIYVQDLATGQ----RELVASFRGIN----GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID-TEPT 298 (433)
T ss_pred cEEEEEECCCCC----EEEeccCCCCc----cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc-cceE
Confidence 468889998888 66665443211 0122233554 544322 22 57899999888766654321111 1122
Q ss_pred EEEeCCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC--CceEEEEEecCC
Q 044903 291 AAMDEEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~--~~~i~v~d~~~~ 358 (387)
..-.+.+|++.....+ .++.+|.++...+.+...............+..|++..+. ...++++|..++
T Consensus 299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 2222334555543333 5888898888777764322111122222234455555433 246888888644
No 161
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.60 E-value=32 Score=33.31 Aligned_cols=135 Identities=10% Similarity=-0.099 Sum_probs=74.7
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
.+++++|..+++++++...+..-....-...+.+||+...... ...++++|..+++ .+.+..-.. .
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g------~~~Iy~~dl~~g~----~~rlt~~g~--~-- 322 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG------YPNIFMKKLNSGS----VEQVVFHGK--N-- 322 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC------CceEEEEECCCCC----eEeCccCCC--c--
Confidence 5789999999999998765431112222233456776654322 2478899999888 766542111 1
Q ss_pred cceeEEEECCEEEEEee-e-------C-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--CeEEEEe
Q 044903 244 EAIDAVGWKGKLCLVNV-K-------G-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSKYD 312 (387)
Q Consensus 244 ~~~~~v~~~g~lyv~gg-~-------~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--~~v~~yd 312 (387)
.....-+|+..++.. . + ..+.++|++++.++.+..... ...++..-.|..|++..... ..+..++
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 112333554332221 1 1 478889999998888765311 11233333344455554322 2367777
Q ss_pred CCCC
Q 044903 313 EVMD 316 (387)
Q Consensus 313 ~~~~ 316 (387)
.+.+
T Consensus 399 l~g~ 402 (419)
T PRK04043 399 LNYN 402 (419)
T ss_pred cCCC
Confidence 7654
No 162
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=86.54 E-value=22 Score=31.40 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA---MDEEVLYGIDENSCTLSKYDEV 314 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~---~~~g~ly~~g~~~~~v~~yd~~ 314 (387)
+-.+||.||....++.||..++.=... ...+..++..+ .-+|.+|..|.++|.|..|...
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeee---cccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 346889988888889999887743322 13344445444 3488999999999999998653
No 163
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.49 E-value=19 Score=32.91 Aligned_cols=98 Identities=9% Similarity=0.092 Sum_probs=54.1
Q ss_pred eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCe--EEEE-eCCCCeEEEEeCCCCceEEcc
Q 044903 246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV--LYGI-DENSCTLSKYDEVMDDWKEVV 322 (387)
Q Consensus 246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~--ly~~-g~~~~~v~~yd~~~~~W~~v~ 322 (387)
..++++++...+-|+.+..|.+||+.++. ++...+...-...+....... -.++ +.++|.|.+|+. +.|..+.
T Consensus 46 itavAVs~~~~aSGssDetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~--~~W~~~~ 121 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSSDETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--GSWELLK 121 (362)
T ss_pred eeEEEecceeEeccCCCCcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc--CCeEEee
Confidence 56788899888888888999999987653 122111111001111111111 0333 346788999997 5798888
Q ss_pred ccccccCc--eeEEEeCCeEEEEecCC
Q 044903 323 KSDLLKGA--RHAAAGGGRVCAVCENG 347 (387)
Q Consensus 323 ~~~~~~~~--~~~~~~~~~l~v~gg~~ 347 (387)
......+. ...+--.|+|.+--|++
T Consensus 122 slK~H~~~Vt~lsiHPS~KLALsVg~D 148 (362)
T KOG0294|consen 122 SLKAHKGQVTDLSIHPSGKLALSVGGD 148 (362)
T ss_pred eecccccccceeEecCCCceEEEEcCC
Confidence 76555443 21222245666544443
No 164
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=86.30 E-value=8.6 Score=35.63 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=61.6
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEe-CCCCeEEEEeCCCCceEEccccccccCc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGID-ENSCTLSKYDEVMDDWKEVVKSDLLKGA 330 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g-~~~~~v~~yd~~~~~W~~v~~~~~~~~~ 330 (387)
.+..++.|..+..+-+.|+++++-..--.+..... ..+++....=|+|. ++++.|.+||++.++-..-- -..+.+-
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~v--r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V 238 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETV--RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGV 238 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhhee--eeeeecccCceEEEecCCCeeEEEechhhhhHHHh-cccccee
Confidence 35666666666788899998887653222122221 23445555566665 46778999999988543310 0112222
Q ss_pred eeEEEe-CCeEEEEecCCceEEEEEecCC
Q 044903 331 RHAAAG-GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 331 ~~~~~~-~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
+++..+ -..+++.||.+..+-|||+.+.
T Consensus 239 ~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 239 YCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred EEEeccccceeEEecCCcceEEEeeeccc
Confidence 333333 2567777777888888888855
No 165
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.05 E-value=44 Score=34.31 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=90.5
Q ss_pred CCccEEEeCCCCceeeCCCCCCCc-eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903 163 LTRPLIFDPICRTWTFGPELVTPR-RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 163 ~~~~~vydp~t~~W~~l~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~ 241 (387)
...+.+||..|..-.+.-.....+ .-......++.+.++-|+.++ .+.+||..++.+. .
T Consensus 42 ~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG-------sVqif~~~s~~~~-------------~ 101 (888)
T KOG0306|consen 42 LEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG-------SVQIFSLESEEIL-------------I 101 (888)
T ss_pred cccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc-------eEEeeccCCCcee-------------e
Confidence 467888999887433221122223 222334446777777777652 6778877766511 1
Q ss_pred cccceeEEE----E--CCEEEEEeeeCCeEEEEECCCC--ceeecc--ccccCCCCCcEEEEeCCeEEEEeCCCCeEEEE
Q 044903 242 SREAIDAVG----W--KGKLCLVNVKGAEGAVYDVVAN--TWDDMR--EGMVRGWRGPVAAMDEEVLYGIDENSCTLSKY 311 (387)
Q Consensus 242 ~~~~~~~v~----~--~g~lyv~gg~~~~i~~yD~~~~--~W~~~~--~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~y 311 (387)
...+|.+++ + .|...+-|+.+..|.+||...+ ..+--. ..... .....+..+.+-.+.++.|..|
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~-----~~F~~~~~~lvS~sKDs~iK~W 176 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ-----ALFLNGDSFLVSVSKDSMIKFW 176 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH-----HhccCCCeEEEEeccCceEEEE
Confidence 111122222 1 3555666777788999987543 222111 00111 1112235555555677889999
Q ss_pred eCCCCceEEccccccccCc-eeEEEeCCeEEEEecCCceEEEEEe
Q 044903 312 DEVMDDWKEVVKSDLLKGA-RHAAAGGGRVCAVCENGGGIVVVDV 355 (387)
Q Consensus 312 d~~~~~W~~v~~~~~~~~~-~~~~~~~~~l~v~gg~~~~i~v~d~ 355 (387)
|.++..=.+. ....++- .+++..+ +++|.++.+..+-||+.
T Consensus 177 dL~tqhCf~T--hvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 177 DLETQHCFET--HVDHRGEIWALVLDE-KLLVTAGTDSELKVWEL 218 (888)
T ss_pred ecccceeeeE--EecccceEEEEEEec-ceEEEEecCCceEEEEe
Confidence 9998754432 2233332 3444444 88888888888888877
No 166
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.01 E-value=32 Score=32.62 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=88.0
Q ss_pred EeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECC
Q 044903 192 GYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV 271 (387)
Q Consensus 192 ~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~ 271 (387)
+..++++|+.... + .+..+|+.+..+. |+....-..... ......-+|+||+-...+ .+++||..
T Consensus 65 ~~~dg~v~~~~~~-----G----~i~A~d~~~g~~~--W~~~~~~~~~~~---~~~~~~~~G~i~~g~~~g-~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVGTRD-----G----NIFALNPDTGLVK--WSYPLLGAVAQL---SGPILGSDGKIYVGSWDG-KLYALDAS 129 (370)
T ss_pred EeeCCeEEEecCC-----C----cEEEEeCCCCcEE--ecccCcCcceec---cCceEEeCCeEEEecccc-eEEEEECC
Confidence 6778899987111 1 6788999998865 865543200011 122333389988765544 78899985
Q ss_pred C--CceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC--CceEEccccc-cccCceeEEEeCCeEEEEecC
Q 044903 272 A--NTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVM--DDWKEVVKSD-LLKGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 272 ~--~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~--~~W~~v~~~~-~~~~~~~~~~~~~~l~v~gg~ 346 (387)
+ ..|+.-... . .......++.++.+|+.. .++.++..|.++ ..|+.-...+ ........+..++.+|+-..+
T Consensus 130 ~G~~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~ 206 (370)
T COG1520 130 TGTLVWSRNVGG-S-PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG 206 (370)
T ss_pred CCcEEEEEecCC-C-eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC
Confidence 3 479866554 1 111223345566677664 467888888774 4687544332 222122222556666666332
Q ss_pred -CceEEEEEecCCCCCceeE
Q 044903 347 -GGGIVVVDVKAAAAPTIFV 365 (387)
Q Consensus 347 -~~~i~v~d~~~~~~~~~W~ 365 (387)
+..++.+|+..+ ...|+
T Consensus 207 ~~~~~~a~~~~~G--~~~w~ 224 (370)
T COG1520 207 YDGILYALNAEDG--TLKWS 224 (370)
T ss_pred CcceEEEEEccCC--cEeee
Confidence 346777787632 35677
No 167
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.83 E-value=34 Score=32.87 Aligned_cols=109 Identities=10% Similarity=-0.017 Sum_probs=55.3
Q ss_pred ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce-----EEccccc
Q 044903 251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDW-----KEVVKSD 325 (387)
Q Consensus 251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W-----~~v~~~~ 325 (387)
-+|.++++|..+......|.....|+.+......... ......++.+++++ ..|.+..-+.....| .++....
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~ 325 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKS 325 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCEEEEe-CCceEEEecCCCCcccccceeecccCC
Confidence 3455666655443333344444459988753333221 12224567888887 456776666555555 4433221
Q ss_pred cccCceeEE-EeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 326 LLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 326 ~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
.......++ .-++.++++|..| .++.-... |+.|+.
T Consensus 326 ~~~~l~~v~~~~d~~~~a~G~~G-~v~~s~D~----G~tW~~ 362 (398)
T PLN00033 326 RGFGILDVGYRSKKEAWAAGGSG-ILLRSTDG----GKSWKR 362 (398)
T ss_pred CCcceEEEEEcCCCcEEEEECCC-cEEEeCCC----CcceeE
Confidence 112223333 3467788885444 33333222 357997
No 168
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.70 E-value=24 Score=30.96 Aligned_cols=121 Identities=10% Similarity=0.034 Sum_probs=76.9
Q ss_pred EEECCEEEEEeeeCCeEEEEECCCCc----eeeccccccCCCCCcEEEEeCC-eEEEEeCCCCeEEEEeCCCCceEEccc
Q 044903 249 VGWKGKLCLVNVKGAEGAVYDVVANT----WDDMREGMVRGWRGPVAAMDEE-VLYGIDENSCTLSKYDEVMDDWKEVVK 323 (387)
Q Consensus 249 v~~~g~lyv~gg~~~~i~~yD~~~~~----W~~~~~~~~~~~~~~~~~~~~g-~ly~~g~~~~~v~~yd~~~~~W~~v~~ 323 (387)
...|+.-+.-+|.+..++++|..+++ |+.-.. + -.++...+. .+.+-|+.+..+.+||-..+..+.|+.
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a---q---VNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA---Q---VNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccc---e---eeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence 34566555566666788999998874 332111 0 011222222 244445567789999999998888887
Q ss_pred cccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCceeeEEE
Q 044903 324 SDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVH 378 (387)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~~~~~~~ 378 (387)
+...+.....+.+.+...|.|.-++.+-.||+..+ +.-.-.+....++++.+
T Consensus 141 ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G---~l~sDy~g~pit~vs~s 192 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG---TLSSDYFGHPITSVSFS 192 (307)
T ss_pred hhhhcCceeEEEecccEEEeeccCCcEEEEEeecc---eeehhhcCCcceeEEec
Confidence 77777777777778888888777899999999865 33332444444444443
No 169
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=85.06 E-value=20 Score=32.50 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=34.5
Q ss_pred CEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 253 GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 253 g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
+...+-.|.+..+..+|.++++=...-..-..........-.|-.|.+-+..++++.+||..++
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 4444445666789999998886543211000000000011123345555567889999999754
No 170
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=85.04 E-value=39 Score=32.79 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=16.9
Q ss_pred CeEEEEECCCCceeecccccc
Q 044903 263 AEGAVYDVVANTWDDMREGMV 283 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~ 283 (387)
.+|+.|||++++-+.++.+++
T Consensus 287 GdIylydP~td~lekldI~lp 307 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLP 307 (668)
T ss_pred CcEEEeCCCcCcceeeecCCc
Confidence 678999999999888875543
No 171
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.99 E-value=14 Score=35.22 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=75.5
Q ss_pred eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC--EEEEEeeeCCeEE
Q 044903 189 CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG--KLCLVNVKGAEGA 266 (387)
Q Consensus 189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g--~lyv~gg~~~~i~ 266 (387)
..++..+++.++.||.+. .+.++|..|.+ .+..+...+ ..-...+...| .+|..+ .+..+-
T Consensus 207 ~~avS~Dgkylatgg~d~--------~v~Iw~~~t~e------hv~~~~ghr--~~V~~L~fr~gt~~lys~s-~Drsvk 269 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDR--------HVQIWDCDTLE------HVKVFKGHR--GAVSSLAFRKGTSELYSAS-ADRSVK 269 (479)
T ss_pred EEEEcCCCcEEEecCCCc--------eEEEecCcccc------hhhcccccc--cceeeeeeecCccceeeee-cCCceE
Confidence 445566888999998866 56788887765 111111111 00022233333 355442 223444
Q ss_pred EEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc-eeEEEeCCeEEEEec
Q 044903 267 VYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA-RHAAAGGGRVCAVCE 345 (387)
Q Consensus 267 ~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~-~~~~~~~~~l~v~gg 345 (387)
+++.+.....+.-.+-..+..+ --+..-+++..+|+.+.++.+|+...+ =+.+.. + ..+. =+++.+++.=||.|.
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~-IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifr-g-~~~sidcv~~In~~HfvsGS 345 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLG-IDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFR-G-GEGSIDCVAFINDEHFVSGS 345 (479)
T ss_pred EEehhHhHHHHHHhCCccceee-echhcccceEEeccccceeEEEecccc-ceeeee-C-CCCCeeeEEEecccceeecc
Confidence 4443332222111111111100 111234678888888899999887332 111111 1 1222 345667888888888
Q ss_pred CCceEEEEEecCC
Q 044903 346 NGGGIVVVDVKAA 358 (387)
Q Consensus 346 ~~~~i~v~d~~~~ 358 (387)
.++.|..|++.+.
T Consensus 346 dnG~IaLWs~~KK 358 (479)
T KOG0299|consen 346 DNGSIALWSLLKK 358 (479)
T ss_pred CCceEEEeeeccc
Confidence 8888888887754
No 172
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=84.95 E-value=17 Score=35.42 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=61.5
Q ss_pred EEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE--EeCCeEEEEeCCCCeEEEEeCCCCceEEccccc
Q 044903 248 AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD 325 (387)
Q Consensus 248 ~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~ 325 (387)
++.-++...++||.+..+++|.+..+.=.+... ....+...+.+ ..++..+..+...+++..||.+++.= .....-
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~w~ 527 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNRWA 527 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCcccceee-eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecceee
Confidence 333455666677777779999887655333221 11111122222 23555555655678899999987633 212222
Q ss_pred cccCceeEEEe--CCeEEEEecCCceEEEEEecC
Q 044903 326 LLKGARHAAAG--GGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 326 ~~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~~ 357 (387)
.+.....++++ +++++..|.-+..|.+|+++.
T Consensus 528 FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 528 FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred eeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 23333334443 677777766688899999884
No 173
>PRK02889 tolB translocation protein TolB; Provisional
Probab=84.74 E-value=40 Score=32.70 Aligned_cols=179 Identities=13% Similarity=0.028 Sum_probs=82.7
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|.....-+.+..-...-....-..-+.+|+... ... ....++++|..+++ =..+...+...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s-~~~-----~~~~I~~~dl~~g~----~~~l~~~~g~~--- 242 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVS-FES-----KKPVVYVHDLATGR----RRVVANFKGSN--- 242 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEE-ccC-----CCcEEEEEECCCCC----EEEeecCCCCc---
Confidence 567888876555454432222111122222233444332 211 12368899998876 44444333111
Q ss_pred cceeEEEECC-EEEEEee-eC-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903 244 EAIDAVGWKG-KLCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW 318 (387)
Q Consensus 244 ~~~~~v~~~g-~lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W 318 (387)
...+..-|| +|++... .+ ..++.+|...+..+.+..... ....+.-.-.|..|++.....+ .++.+|.++...
T Consensus 243 -~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 243 -SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred -cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 112222355 4443322 22 578888887776665543111 1112222222334555543233 577778777766
Q ss_pred EEccccccccCceeEEEeCC-eEEEEecCC--ceEEEEEecCC
Q 044903 319 KEVVKSDLLKGARHAAAGGG-RVCAVCENG--GGIVVVDVKAA 358 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~-~l~v~gg~~--~~i~v~d~~~~ 358 (387)
+.+.......... ....+| .|+.....+ ..++++|...+
T Consensus 321 ~~lt~~g~~~~~~-~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 321 QRVTFTGSYNTSP-RISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEEecCCCCcCce-EECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 6654221111112 223344 444443322 46888887743
No 174
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.24 E-value=64 Score=34.62 Aligned_cols=180 Identities=12% Similarity=-0.011 Sum_probs=90.3
Q ss_pred ccEEEeCCCCceeeCCCCCCCceeeeEEee-----CCE-EEEEecCCCC-CCC--CCCceEEEEeCCCCccccCeEEcC-
Q 044903 165 RPLIFDPICRTWTFGPELVTPRRWCAAGYS-----RGA-VYVASGIGSQ-FSS--DVAKSVEKWDLMNGEKNSRWEKTG- 234 (387)
Q Consensus 165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-----~~~-iyv~GG~~~~-~~~--~~~~~v~vyd~~t~~~~~~W~~~~- 234 (387)
.+.++|+.+++=.-+-+++..-..++.+.+ +.. +..+|+.... .+. -....++.|+...+... -+-+.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~--lellh~ 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDK--LELLHK 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCce--eeeeec
Confidence 456677776654444344433333333322 222 4444443221 111 12234666765544321 22222
Q ss_pred -CCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC-eEEEEe
Q 044903 235 -ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-TLSKYD 312 (387)
Q Consensus 235 -~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~-~v~~yd 312 (387)
.++.+. ++.+-+.| ++..|.+..+.+||+..++=......-.....-..+...+.+|++-+...+ ..++|+
T Consensus 932 T~~~~~v-----~Ai~~f~~--~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 932 TEIPGPV-----GAICPFQG--RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred cCCCccc-----eEEeccCC--EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEe
Confidence 222222 45556677 455566778999999776543332211111112234455567776654333 478899
Q ss_pred CCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEE
Q 044903 313 EVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVV 353 (387)
Q Consensus 313 ~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~ 353 (387)
++.+....+...+..|.-.++...+..=++.+..-+++++.
T Consensus 1005 ~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred cCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEE
Confidence 99998888877776666554554444333333333455554
No 175
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.47 E-value=31 Score=31.60 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=66.7
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeec-------cccccCCCCCcEEEEeCCeEEEEeC-------------CCCeEEEE
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDM-------REGMVRGWRGPVAAMDEEVLYGIDE-------------NSCTLSKY 311 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~-------~~~~~~~~~~~~~~~~~g~ly~~g~-------------~~~~v~~y 311 (387)
++.||...-+..+|.+||.. |..+ ++.+|.+..---+...+++|||.-- -.|.|-+|
T Consensus 151 ~~~LYaadF~~g~IDVFd~~---f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvF 227 (336)
T TIGR03118 151 GDYLYAANFRQGRIDVFKGS---FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVF 227 (336)
T ss_pred CceEEEeccCCCceEEecCc---cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEE
Confidence 46677776556789999754 3322 1234555544456778999999741 12469999
Q ss_pred eCCCCceEEccccccccCceeE-------EEeCCeEEEEecCCceEEEEEecCC
Q 044903 312 DEVMDDWKEVVKSDLLKGARHA-------AAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 312 d~~~~~W~~v~~~~~~~~~~~~-------~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
|+..+.-+++.+-.++-.+..+ -...|.|+|=.-+++.|-++|+.++
T Consensus 228 d~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 228 TLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred cCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 9998877777654443333222 2346777775556788999998754
No 176
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.70 E-value=34 Score=30.26 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=60.1
Q ss_pred EEEEEeeeCCeEEEEECCCCceeeccc-----cccCCCC-CcEEEEeCCeEEEEe-CCCCeEEEE--eCCCCceEEcccc
Q 044903 254 KLCLVNVKGAEGAVYDVVANTWDDMRE-----GMVRGWR-GPVAAMDEEVLYGID-ENSCTLSKY--DEVMDDWKEVVKS 324 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~-----~~~~~~~-~~~~~~~~g~ly~~g-~~~~~v~~y--d~~~~~W~~v~~~ 324 (387)
+-++-||.++.+.+.+.+.++|..-.. .+..... +|+ +.-.+-++.. +.++.+.+| +.+.+.|+.-..-
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~--~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~ 253 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS--VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE 253 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc--cCCCceeeEEecCCCcEEEEEecCccCcccccccc
Confidence 345667777777777777779975431 1111111 111 1112333332 356777777 5566789875433
Q ss_pred ccccCc-eeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 325 DLLKGA-RHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 325 ~~~~~~-~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
+..... ...-.+.|.++.++++++++.++-.... .+|+.
T Consensus 254 ~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~---Gkw~~ 293 (299)
T KOG1332|consen 254 EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD---GKWEE 293 (299)
T ss_pred cCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC---CcEEE
Confidence 322222 2233556778888888888888866533 35875
No 177
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.30 E-value=35 Score=32.06 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=57.3
Q ss_pred EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCC---CcccccceeEEEECC--E-EEEEeeeCCeEEEEEC
Q 044903 197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD---GRFSREAIDAVGWKG--K-LCLVNVKGAEGAVYDV 270 (387)
Q Consensus 197 ~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~---~~~~~~~~~~v~~~g--~-lyv~gg~~~~i~~yD~ 270 (387)
.|+.+||..+ .+.+++||++..+.. |+.-...+. -+.+.....+..+.| . -++.+-....+-.||+
T Consensus 162 ~Iva~GGke~------~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt 233 (412)
T KOG3881|consen 162 YIVATGGKEN------INELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDT 233 (412)
T ss_pred ceEecCchhc------ccceeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecC
Confidence 4666688754 457788998887766 875532111 111111133444555 2 2222222267889999
Q ss_pred CCCceeeccc-cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 044903 271 VANTWDDMRE-GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD 317 (387)
Q Consensus 271 ~~~~W~~~~~-~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~ 317 (387)
..++=-...- .+..+....+... ++...+++...+.+..||..+.+
T Consensus 234 ~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 234 RHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred cccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCce
Confidence 8654221110 0111111222223 33444445457889999998774
No 178
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=81.84 E-value=47 Score=31.31 Aligned_cols=131 Identities=14% Similarity=0.072 Sum_probs=72.6
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccc--eeEEEECCEEEEEeeeCCeEEEEECCCCceee--ccc----cccCCC
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREA--IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDD--MRE----GMVRGW 286 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~--~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~--~~~----~~~~~~ 286 (387)
++-.+|+.|.++.|+-+. .... +.+-.=||+...-|.....|-.|||++++=.- ++. .....|
T Consensus 138 TvR~WD~~TeTp~~t~Kg---------H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Law 208 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKG---------HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAW 208 (480)
T ss_pred eEEeeccCCCCcceeecC---------CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEee
Confidence 678888888873311100 0011 11122366666655555788999988764221 110 000111
Q ss_pred CCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC-CceEEEEEecC
Q 044903 287 RGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN-GGGIVVVDVKA 357 (387)
Q Consensus 287 ~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~-~~~i~v~d~~~ 357 (387)
. +...+-+.+.+.-++.+|.+.+||....+ .+..+..+..+..|+.+||.=++..|. +..|-+|+...
T Consensus 209 e-p~hl~p~~r~las~skDg~vrIWd~~~~~--~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 209 E-PLHLVPPCRRLASSSKDGSVRIWDTKLGT--CVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred c-ccccCCCccceecccCCCCEEEEEccCce--EEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence 1 11112233444445568899999997763 333444555677889999887777654 67788888775
No 179
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=81.65 E-value=50 Score=31.52 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=84.8
Q ss_pred eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeee--CCeEEEEEC
Q 044903 194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVK--GAEGAVYDV 270 (387)
Q Consensus 194 ~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~--~~~i~~yD~ 270 (387)
.+.++||..+. .+.+.++|..+++ ....++ .. ..+ . ..++. .++.+|+.... ...+.+.|.
T Consensus 84 ~~~~vyv~~~~--------~~~v~vid~~~~~---~~~~~~-vG--~~P-~-~~~~~~~~~~vYV~n~~~~~~~vsvid~ 147 (381)
T COG3391 84 AGNKVYVTTGD--------SNTVSVIDTATNT---VLGSIP-VG--LGP-V-GLAVDPDGKYVYVANAGNGNNTVSVIDA 147 (381)
T ss_pred CCCeEEEecCC--------CCeEEEEcCcccc---eeeEee-ec--cCC-c-eEEECCCCCEEEEEecccCCceEEEEeC
Confidence 46689998654 3478888877766 122222 11 111 1 22233 35589998763 478999999
Q ss_pred CCCceeec-cccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccc----cccccCceeEE-E-eCCeEEEE
Q 044903 271 VANTWDDM-REGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVK----SDLLKGARHAA-A-GGGRVCAV 343 (387)
Q Consensus 271 ~~~~W~~~-~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~----~~~~~~~~~~~-~-~~~~l~v~ 343 (387)
.+++=... +.+. .+ .+......++++|+....++.+.++|..+..=.. .. .+....++..+ . .+.++||.
T Consensus 148 ~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 148 ATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred CCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEE
Confidence 87753322 2111 11 2233334566799998777889999988764443 22 23333333333 2 45568888
Q ss_pred ecCC--ceEEEEEecCC
Q 044903 344 CENG--GGIVVVDVKAA 358 (387)
Q Consensus 344 gg~~--~~i~v~d~~~~ 358 (387)
.... ..+..+|....
T Consensus 225 ~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 225 NDGSGSNNVLKIDTATG 241 (381)
T ss_pred eccCCCceEEEEeCCCc
Confidence 6655 57788877753
No 180
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=81.37 E-value=41 Score=30.30 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=59.3
Q ss_pred EEEEE-eeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCcee
Q 044903 254 KLCLV-NVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH 332 (387)
Q Consensus 254 ~lyv~-gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~ 332 (387)
..|++ ++.+..+-+.|+.+.+=...-.+ ..+.-....+..+|.+..-||.+|.+..||+...+= +...+....-.+
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~s 238 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNS 238 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEee
Confidence 34444 45557778888876654433221 222223344556888999999999999999876532 333333333345
Q ss_pred EEEeCCeEEEEecCCceEEEEEecCC
Q 044903 333 AAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 333 ~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
++...++..+..+-+..|-++|...+
T Consensus 239 l~fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred EEecCCceeEeeccCCceEEEeccch
Confidence 55555555555444555666666543
No 181
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=81.12 E-value=24 Score=33.70 Aligned_cols=113 Identities=7% Similarity=-0.006 Sum_probs=62.7
Q ss_pred eeEEEE-CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEccc
Q 044903 246 IDAVGW-KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVK 323 (387)
Q Consensus 246 ~~~v~~-~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~ 323 (387)
.+++.. ||-|+..|-.+..+.+||+.... .+...+...-.-.++... +|.-.+.+.+++.|..||+.+.+ .+..
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt 426 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NFKT 426 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--ccce
Confidence 334443 56677666555788999998776 343322211111223333 34433444567779999997654 2222
Q ss_pred cc--cccC-ceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 324 SD--LLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 324 ~~--~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
.+ .... .....-..|..++++|.+-.|+.++-.++ .|+.
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----~W~~ 468 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK----SWTE 468 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccc----ccee
Confidence 21 1111 22233345777777766777777777766 7985
No 182
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.75 E-value=50 Score=31.43 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=91.3
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCC---ceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICR---TWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL 221 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~---~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~ 221 (387)
.++.-+|.|+.+ ..+..+|..-| .|+-+.. ++-...+...+|+-.++-+.+ ..+..|+.
T Consensus 322 pDg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr~---~~v~dlait~Dgk~vl~v~~d--------~~i~l~~~ 383 (519)
T KOG0293|consen 322 PDGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVRD---PKVHDLAITYDGKYVLLVTVD--------KKIRLYNR 383 (519)
T ss_pred cCCceeEecCCC-------CcEEEecCCcchhhccccccc---ceeEEEEEcCCCcEEEEEecc--------cceeeech
Confidence 356666666632 34455555433 5765432 444444445555443333322 25667777
Q ss_pred CCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccc--cccCCCCCcEEEEeCC--e
Q 044903 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEE--V 297 (387)
Q Consensus 222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g--~ 297 (387)
++.. =+.+-....+. ......-+|++.++.-....+...|.+ .|..+.. +-..+..-...+..|+ +
T Consensus 384 e~~~----dr~lise~~~i----ts~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 384 EARV----DRGLISEEQPI----TSFSISKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred hhhh----hhccccccCce----eEEEEcCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcc
Confidence 6655 33222111111 022344578888887777788888887 5554432 2233322222233222 3
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeC---CeEEEEecCCceEEEEEec
Q 044903 298 LYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGG---GRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 298 ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~---~~l~v~gg~~~~i~v~d~~ 356 (387)
+.+-|.++++|++|+..+.+-.. .++.+...+-+|+++ -.++.-++.++.|-+|-++
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~--~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLA--VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eEEecCCCceEEEEEccCCceeE--eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 44455578899999988774333 333333344444442 2344444444555544443
No 183
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.88 E-value=65 Score=31.74 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=85.7
Q ss_pred ccEEEeCCCCceeeCCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc
Q 044903 165 RPLIFDPICRTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS 242 (387)
Q Consensus 165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~ 242 (387)
.++.++-.+.+-..+-++. +...+++.. +|....+|-... .+++||..+.. .+..|... .
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g--------~v~iwD~~~~k------~~~~~~~~--h 259 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDG--------TVQIWDVKEQK------KTRTLRGS--H 259 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCC--------eEEEEehhhcc------ccccccCC--c
Confidence 3444555555544444332 222233332 355555554332 78899987765 22222210 0
Q ss_pred ccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcE--EE----EeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 243 REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV--AA----MDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 243 ~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~--~~----~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
.....+...++.+...|..+..|..+|.....=. +. ...++. ++ ..++..+.-||+++.+.+||....
T Consensus 260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~-----~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHV-----VS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CceeEEEeccCceEEEecCCCcEEEEEEecchhh-----hh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 1113445567777777777788888887432100 00 011111 11 224556666778889999998322
Q ss_pred ceEEccccccccCceeE---EEeCCeEEEEecC--CceEEEEEecCC
Q 044903 317 DWKEVVKSDLLKGARHA---AAGGGRVCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 317 ~W~~v~~~~~~~~~~~~---~~~~~~l~v~gg~--~~~i~v~d~~~~ 358 (387)
.+.. ..-.+..+..+ ..+...|+.+||+ +..|-++|+.++
T Consensus 334 ~p~~--~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 334 EPKF--TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred cccE--EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 2211 11112222222 2346778888776 467888888755
No 184
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=78.58 E-value=53 Score=29.94 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=64.5
Q ss_pred ccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccccc
Q 044903 165 RPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE 244 (387)
Q Consensus 165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~ 244 (387)
.+-.||..++.=+ ..+.....--.++..+..-.+.||.+. .+-.||..++. =..+..-..+...
T Consensus 36 slrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~dg--------~vr~~Dln~~~----~~~igth~~~i~c-- 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGLDG--------QVRRYDLNTGN----EDQIGTHDEGIRC-- 99 (323)
T ss_pred cEEEEeccchhhh--hheecCCceeeeeccCCceEEEeccCc--------eEEEEEecCCc----ceeeccCCCceEE--
Confidence 4566776666211 111111122334444555555666544 78899999987 4444422222100
Q ss_pred ceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 245 ~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
..-....| ..+.|+.+..+...|+... ........+-.-.++.+.+ ...++|..+..+..||+.+.
T Consensus 100 -i~~~~~~~-~vIsgsWD~~ik~wD~R~~---~~~~~~d~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 100 -IEYSYEVG-CVISGSWDKTIKFWDPRNK---VVVGTFDQGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred -EEeeccCC-eEEEcccCccEEEEecccc---ccccccccCceEEEEeccC-CEEEEeecCceEEEEEcccc
Confidence 00011123 3356777788888888751 1111111111122344444 45556666778999998654
No 185
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.34 E-value=76 Score=31.64 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=56.2
Q ss_pred EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeC--CEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903 148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSR--GAVYVASGIGSQFSSDVAKSVEKWDLMNGE 225 (387)
Q Consensus 148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~ 225 (387)
.||+.|.. .+++.+|...++|-. |+...-..--++.++ ..++++||.+. .||.+|+.+.+
T Consensus 147 Dly~~gsg--------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~g--------~VEfwDpR~ks 208 (703)
T KOG2321|consen 147 DLYLVGSG--------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTEDG--------VVEFWDPRDKS 208 (703)
T ss_pred cEEEeecC--------cceEEEEcccccccc--ccccccccceeeeecCccceEEecccCc--------eEEEecchhhh
Confidence 56766542 678999999888754 322211122223333 35777777544 67888887765
Q ss_pred cccCeEEc------CCCCCCcccccceeEEEECC-EEEEE-eeeCCeEEEEECCCCc
Q 044903 226 KNSRWEKT------GELKDGRFSREAIDAVGWKG-KLCLV-NVKGAEGAVYDVVANT 274 (387)
Q Consensus 226 ~~~~W~~~------~~~~~~~~~~~~~~~v~~~g-~lyv~-gg~~~~i~~yD~~~~~ 274 (387)
+-..+ .+.|.....+. .++..+.+ -|-+. |-....+++||+.+.+
T Consensus 209 ---rv~~l~~~~~v~s~pg~~~~~s-vTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 209 ---RVGTLDAASSVNSHPGGDAAPS-VTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ---hheeeecccccCCCccccccCc-ceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 12111 11221111111 33444444 55443 3333789999997654
No 186
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=78.30 E-value=69 Score=31.16 Aligned_cols=178 Identities=14% Similarity=0.098 Sum_probs=83.9
Q ss_pred CCCccEEEeCCCCceeeCCCCCCCceeeeEE--eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903 162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAG--YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG 239 (387)
Q Consensus 162 ~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~ 239 (387)
...++++++....+=+++.-.. |.+..++ .-++.|.|.--.-.+ ...-.+.|-...+- ....+++.+
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfG--r~fT~VaG~~~dg~iiV~TD~~tP----F~q~~~lYkv~~dg-----~~~e~LnlG 173 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFG--RRFTRVAGWIPDGEIIVSTDFHTP----FSQWTELYKVNVDG-----IKTEPLNLG 173 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEec--cccceeeccCCCCCEEEEeccCCC----cccceeeeEEccCC-----ceeeeccCC
Confidence 3467888988888777765442 3222222 225667666433221 22233445444443 112223322
Q ss_pred cccccceeEEEECCEEEEEeeeC---CeEEEEE--CCCCceeecccc------ccCCCCCcEEEEeCCeEEEEeCCC--C
Q 044903 240 RFSREAIDAVGWKGKLCLVNVKG---AEGAVYD--VVANTWDDMREG------MVRGWRGPVAAMDEEVLYGIDENS--C 306 (387)
Q Consensus 240 ~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD--~~~~~W~~~~~~------~~~~~~~~~~~~~~g~ly~~g~~~--~ 306 (387)
+. ...+.-||. .++|-.. ..=.-|- ..-.-|.....+ ......-.+.+.+++++|++.... |
T Consensus 174 pa----thiv~~dg~-ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~G 248 (668)
T COG4946 174 PA----THIVIKDGI-IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVG 248 (668)
T ss_pred ce----eeEEEeCCE-EEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCcc
Confidence 21 223334564 4443321 0000111 111234433321 011111233456689999998544 5
Q ss_pred eEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 307 TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 307 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.++.-|.+.+.-++....... -..-+..+|+-.|| ..++.|+.||+++.
T Consensus 249 nlYSvdldGkDlrrHTnFtdY--Y~R~~nsDGkrIvF-q~~GdIylydP~td 297 (668)
T COG4946 249 NLYSVDLDGKDLRRHTNFTDY--YPRNANSDGKRIVF-QNAGDIYLYDPETD 297 (668)
T ss_pred ceEEeccCCchhhhcCCchhc--cccccCCCCcEEEE-ecCCcEEEeCCCcC
Confidence 688878876643332221110 11223456666666 46778888888853
No 187
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=77.48 E-value=76 Score=31.21 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=52.5
Q ss_pred cEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE--eCCeEEEEecCCceEEEEEecCCC-CCcee
Q 044903 289 PVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAAA-APTIF 364 (387)
Q Consensus 289 ~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~~~l~v~gg~~~~i~v~d~~~~~-~~~~W 364 (387)
.++| ..++...++||.++++.+|.+..+.-.+......+++....+. .+++.++.|.....+.+||+.+.+ ....|
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence 3444 3456788899999999999998876555544445555544444 467777776667889999998653 23446
Q ss_pred E
Q 044903 365 V 365 (387)
Q Consensus 365 ~ 365 (387)
.
T Consensus 527 ~ 527 (603)
T KOG0318|consen 527 A 527 (603)
T ss_pred e
Confidence 5
No 188
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=77.29 E-value=44 Score=28.38 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=35.6
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeec-c-------ccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDM-R-------EGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDD 317 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~-~-------~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~ 317 (387)
++++|++.| ...+.||...++-..- + .+++.. -.++. ..++++|++. ....++||..+.+
T Consensus 110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~--g~~y~~~d~~~~~ 178 (194)
T cd00094 110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFK--GDQYWRFDPRSKE 178 (194)
T ss_pred CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEE--CCEEEEEeCccce
Confidence 589999976 4678888755543211 1 111111 11222 3337899995 4589999998765
No 189
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=77.26 E-value=48 Score=28.79 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=47.1
Q ss_pred CCcEEE--EeCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc-----Cce--eEEEeCCeEEEEecCCceEEEEEecC
Q 044903 287 RGPVAA--MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK-----GAR--HAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 287 ~~~~~~--~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~-----~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
.++-++ ..+|-+++-|..+..|..||+.-+.-..+-...+.. .+. .++...|++++.|..+.....||+..
T Consensus 183 tghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 183 TGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred cccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 344444 346778887777788999998766544433222211 122 33344789999988889999999995
Q ss_pred C
Q 044903 358 A 358 (387)
Q Consensus 358 ~ 358 (387)
+
T Consensus 263 ~ 263 (350)
T KOG0641|consen 263 G 263 (350)
T ss_pred C
Confidence 4
No 190
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=77.04 E-value=21 Score=34.79 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=59.9
Q ss_pred CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc
Q 044903 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT 274 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~ 274 (387)
+++-.++||... ++-++|+.+-+ =+.-..++..... ...-++..|-++++.+-.+..|.+||+..++
T Consensus 476 dgrtLivGGeas--------tlsiWDLAapT----prikaeltssapa-CyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 476 DGRTLIVGGEAS--------TLSIWDLAAPT----PRIKAELTSSAPA-CYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred CCceEEeccccc--------eeeeeeccCCC----cchhhhcCCcchh-hhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 677778888643 66777777665 2222233322111 1122344567777665445678999998775
Q ss_pred eeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCC
Q 044903 275 WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 275 W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
-..-=.+-..| ..++.+. +|.-...||-++.+.+||..+.
T Consensus 543 ~VrqfqGhtDG--ascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 543 LVRQFQGHTDG--ASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred eeecccCCCCC--ceeEEecCCCceeecCCCccceeehhhhhh
Confidence 43221223333 2344433 3444446677889999998654
No 191
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=77.03 E-value=12 Score=37.43 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=58.5
Q ss_pred EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-----CCeEEEEe-CCCCeEEEEeCCCCceEEccccccc
Q 044903 254 KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-----EEVLYGID-ENSCTLSKYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-----~g~ly~~g-~~~~~v~~yd~~~~~W~~v~~~~~~ 327 (387)
.||+.. ....+-.||.+....+.-...+. .+.+|--|+. -|+.-++. ..+.++..||.++.+-......-.+
T Consensus 66 iLavad-E~G~i~l~dt~~~~fr~ee~~lk-~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 66 ILAVAD-EDGGIILFDTKSIVFRLEERQLK-KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred eEEEec-CCCceeeecchhhhcchhhhhhc-ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 345443 33467888888777762111111 1111111111 13333333 2345799999998866554322222
Q ss_pred cC---ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 328 KG---ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 328 ~~---~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.+ ..+....+-.+|+.||.++.+.+||...+
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 22 34555677889999999999999999854
No 192
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.95 E-value=61 Score=29.81 Aligned_cols=227 Identities=16% Similarity=0.099 Sum_probs=114.0
Q ss_pred CCeEEEEEeCCCCCcc-cCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCce
Q 044903 98 TPIHLFTFDPVSSTWD-PLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW 176 (387)
Q Consensus 98 ~~~~~~~~d~~~~~W~-~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W 176 (387)
+.....+||+.+++-. .+.+.+. +. .+||.+.+.+|.++..--.+. ...-..+-+||.. +..
T Consensus 26 PG~~~~v~D~~~g~~~~~~~a~~g----------RH----FyGHg~fs~dG~~LytTEnd~--~~g~G~IgVyd~~-~~~ 88 (305)
T PF07433_consen 26 PGTFALVFDCRTGQLLQRLWAPPG----------RH----FYGHGVFSPDGRLLYTTENDY--ETGRGVIGVYDAA-RGY 88 (305)
T ss_pred CCcEEEEEEcCCCceeeEEcCCCC----------CE----EecCEEEcCCCCEEEEecccc--CCCcEEEEEEECc-CCc
Confidence 5666888999887533 2322222 11 356888887776444432111 2233457899998 677
Q ss_pred eeCCCCCC-CceeeeEEee-CC-EEEEEec-CCCCC-------CCC-CCceEEEEeCCCCccccCeEEcCCCCCC--ccc
Q 044903 177 TFGPELVT-PRRWCAAGYS-RG-AVYVASG-IGSQF-------SSD-VAKSVEKWDLMNGEKNSRWEKTGELKDG--RFS 242 (387)
Q Consensus 177 ~~l~~~~~-~r~~~~~~~~-~~-~iyv~GG-~~~~~-------~~~-~~~~v~vyd~~t~~~~~~W~~~~~~~~~--~~~ 242 (387)
+++.+.+. ...-|-.... ++ .|.|+.| ...+- +.+ ...++...|..+++ =...-.+|.. +.+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~----ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA----LLEQVELPPDLHQLS 164 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc----eeeeeecCccccccc
Confidence 77776653 2333334333 33 5666644 33321 111 12344556777777 3333223221 111
Q ss_pred ccceeEEEECCEEEEEeeeC-------CeEEE---------EECCCCceeeccccccCCCCCcEEEEe-CCe-EEEEeCC
Q 044903 243 REAIDAVGWKGKLCLVNVKG-------AEGAV---------YDVVANTWDDMREGMVRGWRGPVAAMD-EEV-LYGIDEN 304 (387)
Q Consensus 243 ~~~~~~v~~~g~lyv~gg~~-------~~i~~---------yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~-ly~~g~~ 304 (387)
.. |-++.-+|.+.+-.-+. .-+.. ++...+.|..+.. ...++++. ++. +.+....
T Consensus 165 iR-HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~------Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 165 IR-HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNG------YIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ee-eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCC------ceEEEEEeCCCCEEEEECCC
Confidence 11 44555566655432221 11222 2222223333221 12344443 333 4444445
Q ss_pred CCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903 305 SCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 305 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
.+.+.+||.++.+|.....++. .++++..++. |++..+.+.++.++..
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l~D---~cGva~~~~~-f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPLPD---ACGVAPTDDG-FLVSSGQGQLIRLSPD 285 (305)
T ss_pred CCEEEEEECCCCCEeeccccCc---eeeeeecCCc-eEEeCCCccEEEccCc
Confidence 6789999999999988665443 4556666666 5554444455555444
No 193
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=76.30 E-value=27 Score=31.91 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=40.7
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCC-cEEE--EeCCeEEEEeCCCCeEEEEeCCCCc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAA--MDEEVLYGIDENSCTLSKYDEVMDD 317 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~--~~~g~ly~~g~~~~~v~~yd~~~~~ 317 (387)
.|.+.++|-.-..+..||..+-+--.-.. +..+..+ ...+ ...++||+.+..+|.|..||-..++
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred CCceEEEecCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHH
Confidence 46666665555788999988765433222 2222111 1112 2257899999999999999987664
No 194
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.05 E-value=7.9 Score=23.27 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=17.5
Q ss_pred EEEEeCCeEEEEeCCCCeEEEEeCCC
Q 044903 290 VAAMDEEVLYGIDENSCTLSKYDEVM 315 (387)
Q Consensus 290 ~~~~~~g~ly~~g~~~~~v~~yd~~~ 315 (387)
+.++.++.||+.+. ++.++++|+++
T Consensus 16 ~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T-TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 44667888888764 78999999874
No 195
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=75.94 E-value=45 Score=33.65 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=65.6
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCC----CCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGW----RGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~----~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~ 327 (387)
+++++++.-....++.++.++.+-.++....+.+- ....+..+|+.|-+++ ..+.|++|++++.+-..+...++.
T Consensus 440 ~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l~~rln~ 518 (691)
T KOG2048|consen 440 KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLLKVRLNI 518 (691)
T ss_pred CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccceeecchhccCc
Confidence 45565554334678888888887776654333211 1111223455666665 578999999999987776643332
Q ss_pred cCceeEE--EeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 328 KGARHAA--AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 328 ~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
....... ...++|.|. ..+++++.||+... +-..|..
T Consensus 519 ~vTa~~~~~~~~~~lvva-ts~nQv~efdi~~~-~l~~ws~ 557 (691)
T KOG2048|consen 519 DVTAAAFSPFVRNRLVVA-TSNNQVFEFDIEAR-NLTRWSK 557 (691)
T ss_pred ceeeeeccccccCcEEEE-ecCCeEEEEecchh-hhhhhhh
Confidence 2222222 234555555 67889999999422 2345764
No 196
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=75.59 E-value=87 Score=31.67 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=57.3
Q ss_pred CCEEEEEecCCCCCCCCCCceEEEEeCCCCcc----ccCeEEcCCCCC-CcccccceeEEEE-CCEEEEEeeeCCeEEEE
Q 044903 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK----NSRWEKTGELKD-GRFSREAIDAVGW-KGKLCLVNVKGAEGAVY 268 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~----~~~W~~~~~~~~-~~~~~~~~~~v~~-~g~lyv~gg~~~~i~~y 268 (387)
++.+++.||.+. .+.+||..+... .|.=....+++. +..+ -.+.+.. .|.+.+-||....+..|
T Consensus 129 ~~~lvaSgGLD~--------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s--iYSLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 129 NNELVASGGLDR--------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDS--IYSLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred CceeEEecCCCc--------cEEEEEccCcchhhhhhccccccccCCCCCccc--eeeeecCCcceEEEecCcccceEEe
Confidence 567788888765 567777775531 000111223331 1111 1222222 24466667777899999
Q ss_pred ECCCCcee-eccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 269 DVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 269 D~~~~~W~-~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
|+.+.+=. .+. +-.... ....+..+|.=.+-++.++.|.+||+...
T Consensus 199 Dprt~~kimkLr-GHTdNV-r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 199 DPRTCKKIMKLR-GHTDNV-RVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred ccccccceeeee-ccccce-EEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 99876432 221 111111 11222334555556667889999998654
No 197
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=75.46 E-value=76 Score=30.17 Aligned_cols=35 Identities=20% Similarity=0.521 Sum_probs=32.2
Q ss_pred CCCCChHHHHHHHhhhcC----hhhHHHhhHhhhhhccC
Q 044903 42 LLPGLPDHIAHLCLSHVH----PSILHNVCHSWRRLIYS 76 (387)
Q Consensus 42 ~~~~LP~dl~~~iL~rLP----~~~~r~Vck~W~~li~s 76 (387)
.|..||+||+..|..||| +.++|+||++||+-+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 588999999999999999 77999999999998875
No 198
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.94 E-value=67 Score=29.33 Aligned_cols=138 Identities=11% Similarity=0.054 Sum_probs=74.0
Q ss_pred CCCccEEEeCCCCceeeC--CCCCCCceeeeE------EeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEc
Q 044903 162 ALTRPLIFDPICRTWTFG--PELVTPRRWCAA------GYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT 233 (387)
Q Consensus 162 ~~~~~~vydp~t~~W~~l--~~~~~~r~~~~~------~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~ 233 (387)
..+.++.||...++-+-| -....++..++- -..+++++++-+-+- ..--++..|..++. =+.+
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh-----~nLGvy~ldr~~g~----~~~L 146 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGH-----ANLGVYSLDRRTGK----AEKL 146 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCc-----ceeeeEEEcccCCc----eeec
Confidence 456789999888863332 112222222111 123678888755322 22356677777777 5555
Q ss_pred CCCCCCcccccceeEEEECCEEEEEeeeC---CeEEEEECCCCce--eecccccc-CC-----CCCcEEEEeCCeEEEEe
Q 044903 234 GELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTW--DDMREGMV-RG-----WRGPVAAMDEEVLYGID 302 (387)
Q Consensus 234 ~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~~W--~~~~~~~~-~~-----~~~~~~~~~~g~ly~~g 302 (387)
.+-|.. ..+.+.|-.++-+.-.. ..+++||+.+++| +..+.... .+ ...-.++..-+++|.+
T Consensus 147 ~~~ps~------KG~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF- 219 (339)
T PF09910_consen 147 SSNPSL------KGTLVHDYACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF- 219 (339)
T ss_pred cCCCCc------CceEeeeeEEEeccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE-
Confidence 544433 22333344444331111 7899999999999 44432111 11 1122233445678877
Q ss_pred CCCCeEEEEeCCCC
Q 044903 303 ENSCTLSKYDEVMD 316 (387)
Q Consensus 303 ~~~~~v~~yd~~~~ 316 (387)
..|.+.+.||-.+
T Consensus 220 -~rGGi~vgnP~~~ 232 (339)
T PF09910_consen 220 -VRGGIFVGNPYNG 232 (339)
T ss_pred -EeccEEEeCCCCC
Confidence 3678899998743
No 199
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.71 E-value=70 Score=29.39 Aligned_cols=51 Identities=18% Similarity=0.056 Sum_probs=32.6
Q ss_pred eEEEEeCCCCceEEccccc----------------cccCceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903 307 TLSKYDEVMDDWKEVVKSD----------------LLKGARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 307 ~v~~yd~~~~~W~~v~~~~----------------~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
.+..|++..+.+..+.... ......++...++..+++|+.+..|-++|.+.
T Consensus 172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred eeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence 4677777777665543211 11223455556777777878888899999984
No 200
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=74.70 E-value=1.3e+02 Score=32.31 Aligned_cols=153 Identities=14% Similarity=0.043 Sum_probs=86.9
Q ss_pred CEEEEEecC-CCCC-CCCCCceEEEEeCCC-CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCC
Q 044903 196 GAVYVASGI-GSQF-SSDVAKSVEKWDLMN-GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVA 272 (387)
Q Consensus 196 ~~iyv~GG~-~~~~-~~~~~~~v~vyd~~t-~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~ 272 (387)
+..|++|-. -.+. +......+.+|.... +. -+.+..+-.... ..+.+.++|++.+ |.+..+..|+.++
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~----L~~v~e~~v~Ga---v~aL~~fngkllA--~In~~vrLye~t~ 857 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS----LELVAETVVKGA---VYALVEFNGKLLA--GINQSVRLYEWTT 857 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCc----eeeeeeeeeccc---eeehhhhCCeEEE--ecCcEEEEEEccc
Confidence 466776643 1110 111233555665554 44 555554432221 2556677888653 3445788888766
Q ss_pred CceeeccccccCCCCCcEEEEeCCeEEEEeCC-CCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEE
Q 044903 273 NTWDDMREGMVRGWRGPVAAMDEEVLYGIDEN-SCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIV 351 (387)
Q Consensus 273 ~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~-~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~ 351 (387)
++=-.+......+...-.+-+.++.|++-+-. +-.+..|+...+...++...-.+.-..++..+++..|+.+.+.++++
T Consensus 858 ~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf 937 (1096)
T KOG1897|consen 858 ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLF 937 (1096)
T ss_pred cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEE
Confidence 62111111111111112233567777776532 33588899888888888765555555677788999999987778887
Q ss_pred EEEecC
Q 044903 352 VVDVKA 357 (387)
Q Consensus 352 v~d~~~ 357 (387)
+....+
T Consensus 938 ~v~~d~ 943 (1096)
T KOG1897|consen 938 TVRKDS 943 (1096)
T ss_pred EEEecC
Confidence 775553
No 201
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.67 E-value=64 Score=28.92 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=95.7
Q ss_pred CccEEEeCCCC--ceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903 164 TRPLIFDPICR--TWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF 241 (387)
Q Consensus 164 ~~~~vydp~t~--~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~ 241 (387)
..+..-||.+. .|+..- ..|-...+.++++. .|+|-+.. .++..+..|++.. |.-..--. .
T Consensus 33 ~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdf-VV~GCy~g--------~lYfl~~~tGs~~--w~f~~~~~---v 95 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDF-VVLGCYSG--------GLYFLCVKTGSQI--WNFVILET---V 95 (354)
T ss_pred ceEEEecCCCCcEEeehhh---CceeeeeeEEECCE-EEEEEccC--------cEEEEEecchhhe--eeeeehhh---h
Confidence 45667788877 487643 24556667778776 45554432 4566666666433 76543111 0
Q ss_pred cccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc--
Q 044903 242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD-- 317 (387)
Q Consensus 242 ~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~-- 317 (387)
. ..+.+..++.+..+|..+...++.|+.+. .|+..-.+-. +..++++..++.||+.. ..|.+.+-+++...
T Consensus 96 k--~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~-t~G~vlavt~~~~~~~ 170 (354)
T KOG4649|consen 96 K--VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAI-TAGAVLAVTKNPYSST 170 (354)
T ss_pred c--cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEe-ccceEEEEccCCCCcc
Confidence 0 01122334444445555567888888876 5764432211 22456666677888765 35667666665443
Q ss_pred --eEEccccccccC------ceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 318 --WKEVVKSDLLKG------ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 318 --W~~v~~~~~~~~------~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
|.--..-|.+.. ......++|.+.-+...|.+++ .+.++ |-+|.-
T Consensus 171 ~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvw--r~~t~--GpIf~~ 223 (354)
T KOG4649|consen 171 EFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVW--RPATK--GPIFME 223 (354)
T ss_pred eehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEE--eecCC--Cceecc
Confidence 433222232222 2344457888888854454444 55432 336664
No 202
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.62 E-value=83 Score=30.19 Aligned_cols=136 Identities=12% Similarity=0.000 Sum_probs=72.7
Q ss_pred CceEEEEeCCCC-----ccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---CeEEEEECCCCc---ee-eccc
Q 044903 213 AKSVEKWDLMNG-----EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANT---WD-DMRE 280 (387)
Q Consensus 213 ~~~v~vyd~~t~-----~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~~---W~-~~~~ 280 (387)
.+.+++.|.... . |..+.+--.. ........++.+|+....+ ..+..+++.... |. .+.+
T Consensus 251 ~s~v~~~d~~~~~~~~~~----~~~l~~~~~~----~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAK----PKLLSPREDG----VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEEECCCTTTSS-S----EEEEEESSSS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CCeEEEEeccccCCCcCC----cEEEeCCCCc----eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence 367888888875 5 8887632211 1133445689999986554 788899887654 66 3332
Q ss_pred cccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCceeEEE--e-CCeEEEEe-cC--CceEEE
Q 044903 281 GMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAAA--G-GGRVCAVC-EN--GGGIVV 352 (387)
Q Consensus 281 ~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~~~~~~--~-~~~l~v~g-g~--~~~i~v 352 (387)
......-..+.+.++.|++..-.++ .|.+||.. ..|.......+..+...... . .+.+++.- +- -..++.
T Consensus 323 -~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~ 400 (414)
T PF02897_consen 323 -EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYR 400 (414)
T ss_dssp --SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred -CCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 1111112234466788887764443 59999998 23443332222222221221 1 33444432 11 156888
Q ss_pred EEecCC
Q 044903 353 VDVKAA 358 (387)
Q Consensus 353 ~d~~~~ 358 (387)
||+.++
T Consensus 401 ~d~~t~ 406 (414)
T PF02897_consen 401 YDLATG 406 (414)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 888854
No 203
>PTZ00420 coronin; Provisional
Probab=73.32 E-value=48 Score=33.56 Aligned_cols=60 Identities=8% Similarity=0.038 Sum_probs=36.8
Q ss_pred eEEEEeCCCCeEEEEeCCCCceEEccccccccCceeE-EEeCCeEEEEecCCceEEEEEecCC
Q 044903 297 VLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 297 ~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.+++.++.++.|.+||..+.. .+........-.++ ...+|.+++.++.+..+.+||+.+.
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~--~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEK--RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCc--EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 345566778999999998764 11111111111222 2347888887777788999998854
No 204
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=72.96 E-value=31 Score=35.17 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=62.9
Q ss_pred EECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCc--EEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccc
Q 044903 250 GWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGP--VAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD 325 (387)
Q Consensus 250 ~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~--~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~ 325 (387)
..-+.=|+.+|.. ..+...|..++.=..+=. |..++ ++++ ..|+-...|+.++.|..||..+.+ .+..+.
T Consensus 543 FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~----GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~--~v~~l~ 616 (707)
T KOG0263|consen 543 FHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT----GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS--LVKQLK 616 (707)
T ss_pred ECCcccccccCCCCceEEEEEcCCCcEEEEec----CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc--chhhhh
Confidence 3456778776644 677777776664433322 11122 2222 244444455677889999998752 233333
Q ss_pred cccCc-e-eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 326 LLKGA-R-HAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 326 ~~~~~-~-~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.+.+. + --+..+|.+++.||.++.+-+||....
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 33332 2 233679999999999999999999853
No 205
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.41 E-value=11 Score=27.67 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=31.5
Q ss_pred CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCC
Q 044903 263 AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEV 314 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~ 314 (387)
..+..|||.+++.+.+..++..+ .+.++...+..|++.......|.+|-.+
T Consensus 37 GRll~ydp~t~~~~vl~~~L~fp-NGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGLYFP-NGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE-EEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred cCEEEEECCCCeEEEehhCCCcc-CeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 57899999999998887654432 1122222233466665555678887654
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=70.99 E-value=1e+02 Score=29.80 Aligned_cols=168 Identities=10% Similarity=-0.024 Sum_probs=79.4
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR 243 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~ 243 (387)
..++++|..+++-+.+...+......+...-+.+|++....+. ...++.+|..++. .+.+..-...
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~---- 293 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGT----PSQLTSGAGN---- 293 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCC----eEeeccCCCC----
Confidence 4688999988876666544321111111112334554432221 1257788888777 6666532211
Q ss_pred cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE
Q 044903 244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE 320 (387)
Q Consensus 244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~ 320 (387)
.......-+|+ |++..... ..++.+|.....=+.+.. .+ ......-.++.|++.+. ..++.+|..+..++.
T Consensus 294 ~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~ 367 (429)
T PRK01742 294 NTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING--DNVVKQDLTSGSTEV 367 (429)
T ss_pred cCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEE
Confidence 11222233555 55443332 345555554443222211 11 11111123344555533 467789999888876
Q ss_pred ccccccccCceeEEEeCCeEEEEecCCceEEEE
Q 044903 321 VVKSDLLKGARHAAAGGGRVCAVCENGGGIVVV 353 (387)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~ 353 (387)
+.... ........-+|+.++++...+.+.++
T Consensus 368 lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 368 LSSTF--LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred ecCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 54321 11122345567777765544333333
No 207
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.84 E-value=29 Score=35.56 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=54.5
Q ss_pred EEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC------C--CC
Q 044903 290 VAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA------A--AP 361 (387)
Q Consensus 290 ~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~------~--~~ 361 (387)
+.++..+.+.+..+..+.+.+|+.++.+=.. .++...-.++.+..+++..|+|+.++.+.+||.+.. . .|
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciR--Ti~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg 455 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKCIR--TITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG 455 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcceeE--EeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence 5566777788887777889999988653322 332222234455667888888888899999998855 1 46
Q ss_pred ceeEE-cCCCC
Q 044903 362 TIFVV-DTPLG 371 (387)
Q Consensus 362 ~~W~~-~~~~~ 371 (387)
.+|.+ ..|.+
T Consensus 456 aIWsi~~~pD~ 466 (888)
T KOG0306|consen 456 AIWSISLSPDN 466 (888)
T ss_pred ceeeeeecCCC
Confidence 78998 55544
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=70.53 E-value=1.1e+02 Score=29.76 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=68.2
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEee-eC-CeEEEEECCCCceeeccccccCCCCCcE
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..++++|..+++ -+.+...+.... .....-||+ |++... .+ ..++.+|.+++..+.+..... ....+.
T Consensus 223 ~~i~i~dl~~G~----~~~l~~~~~~~~----~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-~~~~~~ 293 (429)
T PRK03629 223 SALVIQTLANGA----VRQVASFPRHNG----APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-NNTEPT 293 (429)
T ss_pred cEEEEEECCCCC----eEEccCCCCCcC----CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-CcCceE
Confidence 367888988887 666654432211 112223554 544422 22 468899998887776653211 111122
Q ss_pred EEEeCCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCceeEEEeCCe-EEEEecC--CceEEEEEecCC
Q 044903 291 AAMDEEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-l~v~gg~--~~~i~v~d~~~~ 358 (387)
-.-.+..|++.....+ .++.+|+++..-+.+....... ......-+|+ |++.+.. ...++++|+.++
T Consensus 294 wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 294 WFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN-QDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred ECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc-cCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 2222334544443222 5888888877665553221111 1122233444 4444332 256888888754
No 209
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=70.13 E-value=67 Score=29.72 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=83.1
Q ss_pred eEEEeCCEEEEEcCccCCCCC---CCCccEEEe-CCCCceeeCCCC-----CCCc---eeeeEEeeCCEEEEEecCCCCC
Q 044903 141 QLVSLSGKLILLAATTHNFNP---ALTRPLIFD-PICRTWTFGPEL-----VTPR---RWCAAGYSRGAVYVASGIGSQF 208 (387)
Q Consensus 141 ~~~~~~~~l~v~GG~~~~~~~---~~~~~~vyd-p~t~~W~~l~~~-----~~~r---~~~~~~~~~~~iyv~GG~~~~~ 208 (387)
+++.++|.|+.++...-.... ...-+..|- -...+|+..... ...| ...++++.+++||++-|.-...
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 356678988888764321111 111122332 344578763211 1122 3466677799999876643221
Q ss_pred CCCCCceEEEEeCCCCccccCeEEcCCCCCCcc------cccceeEEEE-CCEEEEE--eeeC-----CeEEEEECC-CC
Q 044903 209 SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF------SREAIDAVGW-KGKLCLV--NVKG-----AEGAVYDVV-AN 273 (387)
Q Consensus 209 ~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~------~~~~~~~v~~-~g~lyv~--gg~~-----~~i~~yD~~-~~ 273 (387)
.....-.+..+-...+... |....+++.... -....+++.. ||.|.+- +-.. ..+.+|... ..
T Consensus 83 ~~~~~~~llLvks~~~g~~--W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~ 160 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGGIK--WGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGK 160 (310)
T ss_dssp -SSTTEEEEEEEEESSSSE--E---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTS
T ss_pred ccccccceeeeeccCCcce--eeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCcc
Confidence 1112223333332222212 988876664321 1112223333 5554321 1111 356788777 56
Q ss_pred ceeeccccccCCCCCcEEEEe-CCeEEEEeC-CCCeEEEE--eCCCCceEE-cccccc
Q 044903 274 TWDDMREGMVRGWRGPVAAMD-EEVLYGIDE-NSCTLSKY--DEVMDDWKE-VVKSDL 326 (387)
Q Consensus 274 ~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~-~~~~v~~y--d~~~~~W~~-v~~~~~ 326 (387)
.|..-....+.+-..++++-- +|+|.++.. .++.-.+| .-..++|++ +..+++
T Consensus 161 ~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtlsr 218 (310)
T PF13859_consen 161 TWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLSR 218 (310)
T ss_dssp S-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTTT
T ss_pred ceEeccccCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCccce
Confidence 899765444555557788877 789888864 44545666 345678999 555554
No 210
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=69.56 E-value=1.1e+02 Score=29.54 Aligned_cols=103 Identities=11% Similarity=0.007 Sum_probs=54.5
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCc-------------
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDD------------- 317 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~------------- 317 (387)
+.++|-.+. +..+-+||+..+.=-.--. ++.. -.++++. .++...+|...|.|+..+..+-.
T Consensus 188 ~~rl~TaS~-D~t~k~wdlS~g~LLlti~-fp~s--i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 188 NARLYTASE-DRTIKLWDLSLGVLLLTIT-FPSS--IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred cceEEEecC-CceEEEEEeccceeeEEEe-cCCc--ceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 445655432 2567788877663221111 2222 1233322 24555566667777776543211
Q ss_pred -eEEccccccccC----ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 318 -WKEVVKSDLLKG----ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 318 -W~~v~~~~~~~~----~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
=+++.......+ .+-.+..+|.+++.|+.++.+-|||+...
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 000111111111 24445679999999988999999999865
No 211
>PRK13684 Ycf48-like protein; Provisional
Probab=68.87 E-value=1e+02 Score=28.81 Aligned_cols=158 Identities=11% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCCceeeCCCCCCCceeeeEEeeC-CEEEEEecCCCCCCCCCCceEEEEeCCC--CccccCeEEcCC-CCCCccccccee
Q 044903 172 ICRTWTFGPELVTPRRWCAAGYSR-GAVYVASGIGSQFSSDVAKSVEKWDLMN--GEKNSRWEKTGE-LKDGRFSREAID 247 (387)
Q Consensus 172 ~t~~W~~l~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t--~~~~~~W~~~~~-~~~~~~~~~~~~ 247 (387)
..+.|++.. ++......+....+ +..|++|-.+ .+|-... .+ |+.+.. ++..... ...
T Consensus 33 ~~~~W~~~~-~~~~~~l~~v~F~d~~~g~avG~~G-----------~il~T~DgG~t----W~~~~~~~~~~~~~--l~~ 94 (334)
T PRK13684 33 SSSPWQVID-LPTEANLLDIAFTDPNHGWLVGSNR-----------TLLETNDGGET----WEERSLDLPEENFR--LIS 94 (334)
T ss_pred cCCCcEEEe-cCCCCceEEEEEeCCCcEEEEECCC-----------EEEEEcCCCCC----ceECccCCcccccc--eee
Confidence 345798765 34333444444444 4567666432 1222221 23 998752 3211111 112
Q ss_pred EEEECCEEEEEeeeCCeEEEEECCC--Cceeeccccc-cCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903 248 AVGWKGKLCLVNVKGAEGAVYDVVA--NTWDDMREGM-VRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS 324 (387)
Q Consensus 248 ~v~~~g~lyv~gg~~~~i~~yD~~~--~~W~~~~~~~-~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~ 324 (387)
....++..|+.|..+ .+|-.+. .+|+.+.... ..+......++.++.+|+.+ ..+.|++=+-..++|+.+...
T Consensus 95 v~~~~~~~~~~G~~g---~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~ 170 (334)
T PRK13684 95 ISFKGDEGWIVGQPS---LLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMAT-NVGAIYRTTDGGKNWEALVED 170 (334)
T ss_pred eEEcCCcEEEeCCCc---eEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeee-ccceEEEECCCCCCceeCcCC
Confidence 222344566665432 3444443 4999886321 11111122233345566654 467787777788899998653
Q ss_pred ccccCceeEEEeCCeEEEEecCCceEEE
Q 044903 325 DLLKGARHAAAGGGRVCAVCENGGGIVV 352 (387)
Q Consensus 325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v 352 (387)
.. ...+.+....+..+++.|..+.++.
T Consensus 171 ~~-g~~~~i~~~~~g~~v~~g~~G~i~~ 197 (334)
T PRK13684 171 AA-GVVRNLRRSPDGKYVAVSSRGNFYS 197 (334)
T ss_pred Cc-ceEEEEEECCCCeEEEEeCCceEEE
Confidence 32 1223344444444444344444444
No 212
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=68.69 E-value=21 Score=34.72 Aligned_cols=105 Identities=10% Similarity=-0.045 Sum_probs=62.3
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA 330 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~ 330 (387)
||+-.++||....+-++|+.+-+=+........+....+++ ..+.++.+-...+|.|.+||+.+.. .|...+.....
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDG 553 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDG 553 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--eeecccCCCCC
Confidence 78888999988888899988766554433112222223333 3345555555678999999998773 34444444443
Q ss_pred eeEEEe--CCeEEEEecCCceEEEEEecCC
Q 044903 331 RHAAAG--GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 331 ~~~~~~--~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
..|..+ +|.=+-.||-++.+-.||..+.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhh
Confidence 333333 3444445565666666666543
No 213
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=68.47 E-value=6.1 Score=37.60 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=37.2
Q ss_pred CCCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCCcceEEEe
Q 044903 41 PLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPFLSLYAL 88 (387)
Q Consensus 41 ~~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~~~~l~~~ 88 (387)
.+.-.||.|++.+|++.|- +.+.+.+|+-|+.+..+..-+....++.+
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~ 120 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTF 120 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcc
Confidence 3455799999999999999 66777899999999988765544444433
No 214
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=67.96 E-value=82 Score=32.83 Aligned_cols=135 Identities=10% Similarity=0.082 Sum_probs=66.7
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC--EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG--KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA 292 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g--~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~ 292 (387)
.+++||..++. =+ .+............++++|+ ++.+-++....+..+|..+..- +. .+..+.....++
T Consensus 471 ~Id~fNmQSGi----~r--~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l--~~-~l~l~~~~~~iv 541 (910)
T KOG1539|consen 471 TIDRFNMQSGI----HR--KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL--KK-SLRLGSSITGIV 541 (910)
T ss_pred eEEEEEcccCe----ee--cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce--ee-eeccCCCcceee
Confidence 78999998876 11 11111111122345666775 5677666666677777766541 11 111111111222
Q ss_pred Ee-CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 293 MD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 293 ~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.. ...++.+..++-.|.+||..+.+-.+.-.-...+-..-.+.-+|+-++....+..|-+||+-+.
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 11 1124444445567888988766322211100011122244556776666556667777776644
No 215
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.06 E-value=63 Score=27.99 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=47.3
Q ss_pred eeEEEECCEEEEEeeeC--CeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC
Q 044903 246 IDAVGWKGKLCLVNVKG--AEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVM 315 (387)
Q Consensus 246 ~~~v~~~g~lyv~gg~~--~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~ 315 (387)
......+|.+|.-.|.. ..+.++|+++. .|++.-+ +....+-.++..++.+|.+.-..+..+.||.++
T Consensus 49 QGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 49 QGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT 120 (262)
T ss_pred cceeeeCCEEEEeccccccceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEeccceeEEEChHH
Confidence 33556688777765543 78999999854 5664422 233345567778899999988788888888754
No 216
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.26 E-value=88 Score=27.13 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=60.3
Q ss_pred EeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECC
Q 044903 192 GYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV 271 (387)
Q Consensus 192 ~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~ 271 (387)
...+++++.--|.-. .+.+.++|..+.+.. |++--+ |...++ -....+++.+|.+.=.......||..
T Consensus 52 ~~~~g~i~esTG~yg------~S~ir~~~L~~gq~~--~s~~l~-~~~~Fg---EGit~~gd~~y~LTw~egvaf~~d~~ 119 (262)
T COG3823 52 EYLDGHILESTGLYG------FSKIRVSDLTTGQEI--FSEKLA-PDTVFG---EGITKLGDYFYQLTWKEGVAFKYDAD 119 (262)
T ss_pred eeeCCEEEEeccccc------cceeEEEeccCceEE--EEeecC-Cccccc---cceeeccceEEEEEeccceeEEEChH
Confidence 345677777655422 347889999988754 665433 222232 34567889999886544556777764
Q ss_pred CCceeecccc--ccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC
Q 044903 272 ANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVM 315 (387)
Q Consensus 272 ~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~ 315 (387)
+ .+++... ...|| .++..+..|.+-+| +..+..-||++
T Consensus 120 t--~~~lg~~~y~GeGW---gLt~d~~~LimsdG-satL~frdP~t 159 (262)
T COG3823 120 T--LEELGRFSYEGEGW---GLTSDDKNLIMSDG-SATLQFRDPKT 159 (262)
T ss_pred H--hhhhcccccCCcce---eeecCCcceEeeCC-ceEEEecCHHH
Confidence 3 3333321 12333 45555555555443 34566667764
No 217
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=66.09 E-value=1.4e+02 Score=29.43 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=62.6
Q ss_pred EEEECCEEEEEeeeCCeEEEEECCC-----CceeeccccccCCCCCcEEEEeCCeEEEEeC------CCCeEEEEeCCCC
Q 044903 248 AVGWKGKLCLVNVKGAEGAVYDVVA-----NTWDDMREGMVRGWRGPVAAMDEEVLYGIDE------NSCTLSKYDEVMD 316 (387)
Q Consensus 248 ~v~~~g~lyv~gg~~~~i~~yD~~~-----~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~------~~~~v~~yd~~~~ 316 (387)
+..++|+..+--|.+..+-++|+.. +.|+-++...+.. .+...-+.+|.+.|. ..+.++.||..+
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t---dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t- 446 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT---DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT- 446 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCC---ccccCCCceEEEecccccCCCCCceEEEEeccc-
Confidence 3446777666655556777777753 4677666533332 233344677777773 235699998854
Q ss_pred ceEEccccccccCceeEEEeC---CeEEEEecCCceEEEEEecCCCCC
Q 044903 317 DWKEVVKSDLLKGARHAAAGG---GRVCAVCENGGGIVVVDVKAAAAP 361 (387)
Q Consensus 317 ~W~~v~~~~~~~~~~~~~~~~---~~l~v~gg~~~~i~v~d~~~~~~~ 361 (387)
...+...+.....+.-+.+. +.|++-.|+|..-..||+.....|
T Consensus 447 -~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RG 493 (641)
T KOG0772|consen 447 -LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRG 493 (641)
T ss_pred -eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECccccccc
Confidence 44554444333333333343 566766556555566788865455
No 218
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=65.41 E-value=75 Score=26.04 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=44.2
Q ss_pred EeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc-cccceeE-EEECCEEEEEeeeC----CeE
Q 044903 192 GYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF-SREAIDA-VGWKGKLCLVNVKG----AEG 265 (387)
Q Consensus 192 ~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~-~~~~~~~-v~~~g~lyv~gg~~----~~i 265 (387)
+.++|.+|-++.... ......+..||..+.+ .....++|.... ....... ++.+++|.++.... ..|
T Consensus 2 V~vnG~~hW~~~~~~---~~~~~~IlsFDl~~E~----F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~I 74 (164)
T PF07734_consen 2 VFVNGALHWLAYDEN---NDEKDFILSFDLSTEK----FGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEI 74 (164)
T ss_pred EEECCEEEeeEEecC---CCCceEEEEEeccccc----cCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEE
Confidence 456888876655433 1112278999999999 733333443322 1122333 33477888774322 344
Q ss_pred EEEE---CCCCceeecc
Q 044903 266 AVYD---VVANTWDDMR 279 (387)
Q Consensus 266 ~~yD---~~~~~W~~~~ 279 (387)
++-+ ....+|+++-
T Consensus 75 Wvm~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLF 91 (164)
T ss_pred EEEeeeccCcceEEEEE
Confidence 4433 2367898663
No 219
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=63.61 E-value=77 Score=32.51 Aligned_cols=62 Identities=6% Similarity=0.055 Sum_probs=37.9
Q ss_pred CCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVM 315 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~ 315 (387)
.|+..+.|+....|.+||..+.+=- ++... .+.-.......+|.+.+.|+.++.|.+||..+
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 5665555666688899998765321 11110 11101122245788999999899999999754
No 220
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=62.92 E-value=78 Score=30.70 Aligned_cols=98 Identities=11% Similarity=0.027 Sum_probs=52.5
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE--EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccC
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG 329 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~ 329 (387)
+|.-++-++++..+..+|+++++-..-- ..+..-.++- ..+.++|+.|+.+++|..||..+.+ .+..-.+..+
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f---~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg 343 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRF---HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLG 343 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEE---ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhh
Confidence 4455555666667788898888654321 1110000111 1234899999999999999998775 2223222222
Q ss_pred c--eeEEEeCCeEEEEecCCceEEEEE
Q 044903 330 A--RHAAAGGGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 330 ~--~~~~~~~~~l~v~gg~~~~i~v~d 354 (387)
. -..+.-+|+=+|.......+.+|+
T Consensus 344 ~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred heeeeEEccCCceEeeeccCccEEEEE
Confidence 1 112233455555544444444443
No 221
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=62.07 E-value=1.5e+02 Score=28.82 Aligned_cols=134 Identities=11% Similarity=0.017 Sum_probs=66.1
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---CeEEEEECCCCceeeccccccCCCCCcEE
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVA 291 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~ 291 (387)
.+..+|..++. =..+.+.+.. .......-||+.+++.... ..++.+|....+=..+........ .++.
T Consensus 219 ~i~~~~l~~g~----~~~i~~~~g~----~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~ 289 (425)
T COG0823 219 RIYYLDLNTGK----RPVILNFNGN----NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT-SPSW 289 (425)
T ss_pred eEEEEeccCCc----cceeeccCCc----cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcccc-CccC
Confidence 45666666665 3333332211 1122333456655553332 688999998765222332111111 4455
Q ss_pred EEeCCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEec---CCceEEEEEecCC
Q 044903 292 AMDEEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCE---NGGGIVVVDVKAA 358 (387)
Q Consensus 292 ~~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg---~~~~i~v~d~~~~ 358 (387)
.-.|.+|+......| .|++||++...=+.+........ +....-+|+.+++-+ +..++..+|+.+.
T Consensus 290 spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 290 SPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 555666666654444 49999998876555543222221 222333443333322 2245677777644
No 222
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.64 E-value=33 Score=25.18 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=15.6
Q ss_pred CCeEEEEeCCCCceEEccc
Q 044903 305 SCTLSKYDEVMDDWKEVVK 323 (387)
Q Consensus 305 ~~~v~~yd~~~~~W~~v~~ 323 (387)
+|.+..|||.+++.+.+..
T Consensus 36 ~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE
T ss_pred CcCEEEEECCCCeEEEehh
Confidence 4679999999999988764
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=61.51 E-value=61 Score=32.29 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=55.6
Q ss_pred EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcc-------cccc
Q 044903 254 KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVV-------KSDL 326 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~-------~~~~ 326 (387)
-||+. |.+..++.++++.++|-.-=..-..+.....+.-+ ..|..+|+.+|.|..||+..+.=...- ..|.
T Consensus 147 Dly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 147 DLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred cEEEe-ecCcceEEEEccccccccccccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence 46655 45568899999999985321100111111111122 348888888999999999776432211 1111
Q ss_pred ccC--ceeEEEe-CCeEEE-EecCCceEEEEEecCC
Q 044903 327 LKG--ARHAAAG-GGRVCA-VCENGGGIVVVDVKAA 358 (387)
Q Consensus 327 ~~~--~~~~~~~-~~~l~v-~gg~~~~i~v~d~~~~ 358 (387)
... ...+... ++-|-+ +|-..+.+++||..+.
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 111 1222233 324444 4445688888988754
No 224
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=60.56 E-value=78 Score=30.28 Aligned_cols=109 Identities=10% Similarity=-0.039 Sum_probs=60.0
Q ss_pred EEEEeeeCCeEEEEECCCCceeeccccccCCCCCc--EEE--EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc
Q 044903 255 LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP--VAA--MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA 330 (387)
Q Consensus 255 lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~--~~~--~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~ 330 (387)
+|..-+.+..+.+.|..+ |...+.....+..+. ++. -.++.|...++.+++|..||+.+-.= .+-.++.+...
T Consensus 242 lF~sv~dd~~L~iwD~R~--~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~de 318 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRS--NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDE 318 (422)
T ss_pred hheeecCCCeEEEEEcCC--CCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcc
Confidence 343334445677788776 433332112221111 222 23566777777889999999864321 22222333333
Q ss_pred eeEE---EeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903 331 RHAA---AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV 366 (387)
Q Consensus 331 ~~~~---~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~ 366 (387)
...+ .....|+..+|.+..+.|||.+.-+..+.|+-
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 3333 34567788877788999999995544454443
No 225
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.33 E-value=1.4e+02 Score=27.48 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=52.6
Q ss_pred eeEEEe--CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--C-CEEEEEecCCCCCCCCCCc
Q 044903 140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--R-GAVYVASGIGSQFSSDVAK 214 (387)
Q Consensus 140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~ 214 (387)
|.++.. ...+++|+- .+-..+.++|+.+.+=...-..+..|.+...+++ + ..+|..-..- ....-
T Consensus 8 H~~a~~p~~~~avafaR------RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~----~~g~G 77 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFAR------RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY----ETGRG 77 (305)
T ss_pred cceeeCCCCCeEEEEEe------CCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc----CCCcE
Confidence 455553 456666653 2335678999999876654344677876555544 3 4677764432 13345
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCC
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDG 239 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~ 239 (387)
.+-+||.. +. ...+...+..
T Consensus 78 ~IgVyd~~-~~----~~ri~E~~s~ 97 (305)
T PF07433_consen 78 VIGVYDAA-RG----YRRIGEFPSH 97 (305)
T ss_pred EEEEEECc-CC----cEEEeEecCC
Confidence 78899998 44 7777766543
No 226
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=60.03 E-value=1.6e+02 Score=28.12 Aligned_cols=200 Identities=12% Similarity=0.058 Sum_probs=99.1
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeee-EEee-CCEEEEEecCCCCCC---CCCCceEEEE
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCA-AGYS-RGAVYVASGIGSQFS---SDVAKSVEKW 219 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~-~~~~-~~~iyv~GG~~~~~~---~~~~~~v~vy 219 (387)
-+++.++++-... ......+.++|..|++... . ......+. .+-. +++.++....+.... ......+..+
T Consensus 133 pdg~~la~~~s~~--G~e~~~l~v~Dl~tg~~l~--d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 133 PDGKRLAYSLSDG--GSEWYTLRVFDLETGKFLP--D-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TTSSEEEEEEEET--TSSEEEEEEEETTTTEEEE--E-EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCCEEEEEecCC--CCceEEEEEEECCCCcCcC--C-cccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 4666666653222 1223468999999985432 1 11122222 2222 334433333322100 1225567777
Q ss_pred eCCCCccccCeE--EcCCCCCCcccccceeEEEECCEEEEEeeeC----CeEEEEECCCC-----ceeeccccccCCCCC
Q 044903 220 DLMNGEKNSRWE--KTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVAN-----TWDDMREGMVRGWRG 288 (387)
Q Consensus 220 d~~t~~~~~~W~--~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~-----~W~~~~~~~~~~~~~ 288 (387)
...+.. -. .+-.-+...+. .......-+++..++.... ..++..|.... .|+.+...... ..
T Consensus 208 ~~gt~~----~~d~lvfe~~~~~~~-~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~--~~ 280 (414)
T PF02897_consen 208 KLGTPQ----SEDELVFEEPDEPFW-FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG--VE 280 (414)
T ss_dssp ETTS-G----GG-EEEEC-TTCTTS-EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS---E
T ss_pred ECCCCh----HhCeeEEeecCCCcE-EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc--eE
Confidence 777765 32 22112222110 0012233456654443322 46778888764 78877542221 12
Q ss_pred cEEEEeCCeEEEEeCC---CCeEEEEeCCCCc---eEE-ccccccccCceeEEEeCCeEEEEecCC--ceEEEEEec
Q 044903 289 PVAAMDEEVLYGIDEN---SCTLSKYDEVMDD---WKE-VVKSDLLKGARHAAAGGGRVCAVCENG--GGIVVVDVK 356 (387)
Q Consensus 289 ~~~~~~~g~ly~~g~~---~~~v~~yd~~~~~---W~~-v~~~~~~~~~~~~~~~~~~l~v~gg~~--~~i~v~d~~ 356 (387)
..+...++.+|+.... .+.|...+.++.. |.. +.+......--.+...++.|++.-..+ ..+.++|..
T Consensus 281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 2344568889988742 3579999887664 664 333222222334556788888875432 578899988
No 227
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.93 E-value=1e+02 Score=27.30 Aligned_cols=50 Identities=18% Similarity=0.053 Sum_probs=30.3
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeC--CeEEEEe
Q 044903 295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGG--GRVCAVC 344 (387)
Q Consensus 295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~--~~l~v~g 344 (387)
.|.||+..-+.+++..+|+.+.+--.-..+|..+...+|+.-. +-+|+..
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 6789998878889999999988543323344333333333322 2355553
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=59.89 E-value=2.6e+02 Score=30.91 Aligned_cols=82 Identities=9% Similarity=0.019 Sum_probs=48.6
Q ss_pred EEEEeCCCCeEEEEeCCC--CceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCceee
Q 044903 298 LYGIDENSCTLSKYDEVM--DDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEAL 375 (387)
Q Consensus 298 ly~~g~~~~~v~~yd~~~--~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~~~~ 375 (387)
+.+..-..+.+..||+.+ +.|+.-..+....-.-.++.-.+..+++|-..+.+..||..=......|+.+.....+-+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence 333333456788898865 467764333222222334445667888877788899999984444577886555444434
Q ss_pred EEEe
Q 044903 376 SVHI 379 (387)
Q Consensus 376 ~~~~ 379 (387)
..+.
T Consensus 1245 ~~~~ 1248 (1431)
T KOG1240|consen 1245 WLCP 1248 (1431)
T ss_pred Eeec
Confidence 3333
No 229
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=58.67 E-value=47 Score=32.11 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=35.2
Q ss_pred CeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE--eC-CeEEEEecCCceEEEEEecCC
Q 044903 296 EVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA--GG-GRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 296 g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~-~~l~v~gg~~~~i~v~d~~~~ 358 (387)
|.-|+-.+.++.+..||.|+.+=..-... -. ...++. .+ .+++++|+.+..|.-||+.++
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHL--DK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEec--CC-CceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 45566666788999999999854332111 11 111222 23 378888876666666666543
No 230
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.27 E-value=2.8e+02 Score=30.26 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=67.7
Q ss_pred CCEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC-------CceEEccc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVM-------DDWKEVVK 323 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~-------~~W~~v~~ 323 (387)
.|.||+-|+ ...|-++|...+. -..++.+-....+.-+.-..+|.+.+.|..+|.+.+||... ..|++...
T Consensus 1177 ~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1177 SGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred CCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 578887765 4578888987664 33444321111111222234577899998899999998642 34544433
Q ss_pred cccccCceeEEEeCCeE-EEEecCCceEEEEEecCCCCCceeEEcCC----CCceeeEEEecc
Q 044903 324 SDLLKGARHAAAGGGRV-CAVCENGGGIVVVDVKAAAAPTIFVVDTP----LGFEALSVHILP 381 (387)
Q Consensus 324 ~~~~~~~~~~~~~~~~l-~v~gg~~~~i~v~d~~~~~~~~~W~~~~~----~~~~~~~~~~~~ 381 (387)
.++.- +.-..-+|.- +|-|..++.|.++|+.......--++..+ +.+..+.||...
T Consensus 1256 ~~~Iv--~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1256 VEPIV--HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA 1316 (1387)
T ss_pred cccce--eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC
Confidence 22211 1111222322 33333467788888875322222333332 237778887654
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.30 E-value=1.8e+02 Score=27.63 Aligned_cols=95 Identities=8% Similarity=-0.014 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeecc-ccccCCCCCcEEE
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMR-EGMVRGWRGPVAA 292 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~ 292 (387)
..+-.||+.++. +.+......-.+ -.+.+-..+|.+.++|-....+..||..+..=-... .+. .| ...++.
T Consensus 226 hqvR~YDt~~qR-----RPV~~fd~~E~~-is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tG-sirsih 297 (412)
T KOG3881|consen 226 HQVRLYDTRHQR-----RPVAQFDFLENP-ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TG-SIRSIH 297 (412)
T ss_pred eeEEEecCcccC-----cceeEeccccCc-ceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cC-CcceEE
Confidence 467889998775 444333221111 012222334544334333357788888665432221 101 11 112333
Q ss_pred EeCC-eEEEEeCCCCeEEEEeCCCC
Q 044903 293 MDEE-VLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 293 ~~~g-~ly~~g~~~~~v~~yd~~~~ 316 (387)
++.+ .+...+|-+..+.+||.+++
T Consensus 298 ~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EcCCCceEEeeccceeEEEeecccc
Confidence 4444 45556667788999999884
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=56.80 E-value=56 Score=31.09 Aligned_cols=97 Identities=20% Similarity=0.169 Sum_probs=47.6
Q ss_pred CEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcE-EEE-e-CCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903 253 GKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPV-AAM-D-EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK 328 (387)
Q Consensus 253 g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~-~~~-~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~ 328 (387)
+-+|++......+.+.|.++.+ -.+++.+- ..+. .+. . +..+|+.+ .++.+.++|+.+.+ .+...+.-.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~----~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~--~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG----APHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGK--VVATIKVGG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST----TEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSS--EEEEEE-SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC----CceeEEEecCCCCEEEEEc-CCCeEEEEECCccc--EEEEEecCC
Confidence 3345554334678888888764 34444311 1122 221 2 34688876 47899999998886 333332222
Q ss_pred CceeEE-EeCCeEEEE-ecCCceEEEEEec
Q 044903 329 GARHAA-AGGGRVCAV-CENGGGIVVVDVK 356 (387)
Q Consensus 329 ~~~~~~-~~~~~l~v~-gg~~~~i~v~d~~ 356 (387)
.+..++ ..+|+.+++ +...+.+.++|..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 222222 334443333 2234555555554
No 233
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=56.34 E-value=30 Score=33.25 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=40.6
Q ss_pred EEEEeCCeEEEEeC-CCCeEEEEeCCCCceEEccccccccCceeE-EEeCCeEEEEecCCceEEEEEec
Q 044903 290 VAAMDEEVLYGIDE-NSCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 290 ~~~~~~g~ly~~g~-~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
+++..+.-.|+++| ..+.++.|...+..--.+- ..+...-.++ +..+|..++.||.++.+.+|++.
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 33333444677766 7889999999887432222 1122222233 34577888888888889888765
No 234
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=55.65 E-value=1.6e+02 Score=26.50 Aligned_cols=152 Identities=15% Similarity=0.198 Sum_probs=78.7
Q ss_pred eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe---CCCCccccCeEEc--CCCCC----CcccccceeEEEECCEEEE
Q 044903 187 RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD---LMNGEKNSRWEKT--GELKD----GRFSREAIDAVGWKGKLCL 257 (387)
Q Consensus 187 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd---~~t~~~~~~W~~~--~~~~~----~~~~~~~~~~v~~~g~lyv 257 (387)
+.++..++++++|..--.... ....+...+.|| ...+. |+.. +.++. .......|+-+.+++.=|.
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~-a~~km~~~~Lw~RpMF~~sp----W~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA 150 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTV-ASNKMVRAELWSRPMFHDSP----WRITELGTIASFTSAGVAVTELHSFATIDDNQFA 150 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEET-TT--EEEEEEEEEE-STTS------EEEEEES-TT--------SEEEEEEE-SSS-EE
T ss_pred eeeeeeeecceeeEEEeehhh-hhhhhhhhhhhcccccccCC----ceeeecccccccccccceeeeeeeeeEecCCcee
Confidence 346677889999876543221 234555667776 34566 8754 33332 1112344777888887778
Q ss_pred EeeeC-----C-eEEEEECCCCce--------eeccccccCCCCCcEEEEeCCeEEEEeC-----CCC-eEEEEeCCCCc
Q 044903 258 VNVKG-----A-EGAVYDVVANTW--------DDMREGMVRGWRGPVAAMDEEVLYGIDE-----NSC-TLSKYDEVMDD 317 (387)
Q Consensus 258 ~gg~~-----~-~i~~yD~~~~~W--------~~~~~~~~~~~~~~~~~~~~g~ly~~g~-----~~~-~v~~yd~~~~~ 317 (387)
+|-.. . ....|-+ +.| +.++......-..+++-..+|.||+..- ..| .+.+-+.....
T Consensus 151 ~GyHnGD~sPRe~G~~yfs--~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~ 228 (367)
T PF12217_consen 151 VGYHNGDVSPRELGFLYFS--DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQN 228 (367)
T ss_dssp EEEEE-SSSS-EEEEEEET--TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS
T ss_pred EEeccCCCCcceeeEEEec--ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCc
Confidence 87554 1 2233322 222 2333322222235677788999999862 123 46777777888
Q ss_pred eEEcccccc-ccCceeEEEeCCeEEEEec
Q 044903 318 WKEVVKSDL-LKGARHAAAGGGRVCAVCE 345 (387)
Q Consensus 318 W~~v~~~~~-~~~~~~~~~~~~~l~v~gg 345 (387)
|..+.-+.. +....-.+..++.||+||.
T Consensus 229 w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 229 WSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp -EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred hhhccccccccccCCCceeeCCEEEEEec
Confidence 998865433 3345667889999999985
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=55.54 E-value=1.9e+02 Score=27.48 Aligned_cols=131 Identities=16% Similarity=0.093 Sum_probs=65.1
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CC-EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcE
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..+.+.|..+.+. -..++... ..|....+ || .+|+.+ .+..+-++|+.+.+ .+.. ...+.....
T Consensus 16 ~~v~viD~~t~~~---~~~i~~~~------~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~--~v~~-i~~G~~~~~ 82 (369)
T PF02239_consen 16 GSVAVIDGATNKV---VARIPTGG------APHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGK--VVAT-IKVGGNPRG 82 (369)
T ss_dssp TEEEEEETTT-SE---EEEEE-ST------TEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSS--EEEE-EE-SSEEEE
T ss_pred CEEEEEECCCCeE---EEEEcCCC------CceeEEEecCCCCEEEEEc-CCCeEEEEECCccc--EEEE-EecCCCcce
Confidence 3677888887761 23333211 11333332 34 588875 44689999998876 2222 222322223
Q ss_pred EEE-eCC-eEEEEeCCCCeEEEEeCCCCceEE-cc--cccc--cc-CceeEE-EeCCeEEEEecC-CceEEEEEecC
Q 044903 291 AAM-DEE-VLYGIDENSCTLSKYDEVMDDWKE-VV--KSDL--LK-GARHAA-AGGGRVCAVCEN-GGGIVVVDVKA 357 (387)
Q Consensus 291 ~~~-~~g-~ly~~g~~~~~v~~yd~~~~~W~~-v~--~~~~--~~-~~~~~~-~~~~~l~v~gg~-~~~i~v~d~~~ 357 (387)
+++ .+| .+|+-....+.+.++|.++.+=.. ++ ..+. .. +..+++ ...+..||+.-. .+.++++|.+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 332 244 455555567899999987754322 22 1111 11 112333 345566666533 57788888663
No 236
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=55.26 E-value=1.4e+02 Score=28.15 Aligned_cols=101 Identities=7% Similarity=-0.009 Sum_probs=55.2
Q ss_pred CEEEEEeeeCCeEEEEECCCCceeeccccc--cCCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccc
Q 044903 253 GKLCLVNVKGAEGAVYDVVANTWDDMREGM--VRGWRGPVAA---MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 253 g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~~~~~~~~~~---~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~ 327 (387)
.++.+.|+....+..|||.++.=..+...+ ...| .+++ -.+..+++-+..++.+.+||..+- |..+...-..
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw--Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~-k~plydI~~h 388 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW--VSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-KAPLYDIAGH 388 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEEeeecchhh--hhheecCCCCceEEEEEecCCeEEEEEeccC-CCcceeeccC
Confidence 346666666688999999877332222101 1111 1111 124467777778899999998543 3233322223
Q ss_pred cCceeEEEeCCe-EEEEecCCceEEEEEec
Q 044903 328 KGARHAAAGGGR-VCAVCENGGGIVVVDVK 356 (387)
Q Consensus 328 ~~~~~~~~~~~~-l~v~gg~~~~i~v~d~~ 356 (387)
-...-++-+... +.|-||.+.++.++.-.
T Consensus 389 ~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 389 NDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEEEeccCCceEEeccCcceEEEeccc
Confidence 333445555444 55555567777777544
No 237
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=54.89 E-value=1.7e+02 Score=26.81 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=89.9
Q ss_pred eeeeEEeeCCEEEEEecCCCC--------------CCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE--
Q 044903 187 RWCAAGYSRGAVYVASGIGSQ--------------FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-- 250 (387)
Q Consensus 187 ~~~~~~~~~~~iyv~GG~~~~--------------~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~-- 250 (387)
.+-+...+++.||. ||+--. ...+.-+.++.||.++++..+-|++--.-+....+ +.+-..
T Consensus 38 TYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaG--EVSdIlYd 114 (339)
T PF09910_consen 38 TYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAG--EVSDILYD 114 (339)
T ss_pred cceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCcccccc--chhheeeC
Confidence 34556667777773 443100 01133468899999999876667764432322211 112222
Q ss_pred -ECCEEEEEeeeC---CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEe---CCCCeEEEEeCCCCce--EEc
Q 044903 251 -WKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGID---ENSCTLSKYDEVMDDW--KEV 321 (387)
Q Consensus 251 -~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g---~~~~~v~~yd~~~~~W--~~v 321 (387)
++++||+.-+.+ -.++..|..++.=+.+...+... ...+.+-..|-+. .....|.++|+.+++| +..
T Consensus 115 P~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~K----G~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f 190 (339)
T PF09910_consen 115 PYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLK----GTLVHDYACFGINNFHKGVSGIHCLDLISGKWVIESF 190 (339)
T ss_pred CCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcC----ceEeeeeEEEeccccccCCceEEEEEccCCeEEEEec
Confidence 356788775444 45666677777665554322111 2233333333331 1124699999999999 333
Q ss_pred ccccc-------ccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 322 VKSDL-------LKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 322 ~~~~~-------~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
..... .+..-+++..-++++.+ -.+.+.|.|+..+
T Consensus 191 ~~~~s~Dg~~~~~~~~G~~~s~ynR~faF--~rGGi~vgnP~~~ 232 (339)
T PF09910_consen 191 DVSLSVDGGPVIRPELGAMASAYNRLFAF--VRGGIFVGNPYNG 232 (339)
T ss_pred ccccCCCCCceEeeccccEEEEeeeEEEE--EeccEEEeCCCCC
Confidence 31111 11234677788888888 3566888888854
No 238
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=54.78 E-value=1.3e+02 Score=25.45 Aligned_cols=89 Identities=18% Similarity=0.108 Sum_probs=46.6
Q ss_pred CeEEEEECCCCceeeccccccCCCCCc-EEE-EeCCeEEEEeC-------CCCeEEEEeCCCCceEEccccccccCceeE
Q 044903 263 AEGAVYDVVANTWDDMREGMVRGWRGP-VAA-MDEEVLYGIDE-------NSCTLSKYDEVMDDWKEVVKSDLLKGARHA 333 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~-~~~g~ly~~g~-------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~ 333 (387)
..++++|..++.|..+.......-..| -+. +.+..|.++-| ..|.++.|++.++.=+.+-....-.....-
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkqQVis 167 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQQVIS 167 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccceeEEE
Confidence 578888998888765532222111111 122 33334444332 346799999999877776654433333333
Q ss_pred EEeCCeEEEEecCCceEEEEEec
Q 044903 334 AAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 334 ~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
+...+..+. ..+.+||-.
T Consensus 168 ~e~~gd~L~-----Lki~vYddd 185 (200)
T PF15525_consen 168 AEKNGDNLN-----LKINVYDDD 185 (200)
T ss_pred EEEeCCEEE-----EEEEEEecC
Confidence 333333322 246666655
No 239
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=54.71 E-value=1.7e+02 Score=26.77 Aligned_cols=138 Identities=11% Similarity=0.130 Sum_probs=66.2
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeC---CEEEEEecCCCCCCCCCCceEEEEeC
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSR---GAVYVASGIGSQFSSDVAKSVEKWDL 221 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~v~vyd~ 221 (387)
-++..+..|+.+ ..+-.||..+++-.+++--..+... +.-++ ..+.+.|..+. ++--+|+
T Consensus 82 ddgskVf~g~~D-------k~~k~wDL~S~Q~~~v~~Hd~pvkt--~~wv~~~~~~cl~TGSWDK--------TlKfWD~ 144 (347)
T KOG0647|consen 82 DDGSKVFSGGCD-------KQAKLWDLASGQVSQVAAHDAPVKT--CHWVPGMNYQCLVTGSWDK--------TLKFWDT 144 (347)
T ss_pred cCCceEEeeccC-------CceEEEEccCCCeeeeeecccceeE--EEEecCCCcceeEeccccc--------ceeeccc
Confidence 345555556643 4567889999988776543322211 11222 23445554433 3333343
Q ss_pred CCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEE-EeCCeE
Q 044903 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAA-MDEEVL 298 (387)
Q Consensus 222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~-~~~g~l 298 (387)
.... =...-.||+. +-++-+..-+-+++-....|.+|+++.. +...+.. +..+...+++ .-++..
T Consensus 145 R~~~----pv~t~~LPeR------vYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~ 212 (347)
T KOG0647|consen 145 RSSN----PVATLQLPER------VYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIES--PLKWQTRCVACFQDKDG 212 (347)
T ss_pred CCCC----eeeeeeccce------eeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcC--cccceeeEEEEEecCCc
Confidence 3322 0111112211 1122222333344444478999999755 3444433 2333333333 445667
Q ss_pred EEEeCCCCeEEEE
Q 044903 299 YGIDENSCTLSKY 311 (387)
Q Consensus 299 y~~g~~~~~v~~y 311 (387)
|.+|+-.|.+.+.
T Consensus 213 ~alGsiEGrv~iq 225 (347)
T KOG0647|consen 213 FALGSIEGRVAIQ 225 (347)
T ss_pred eEeeeecceEEEE
Confidence 8888766665554
No 240
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=54.14 E-value=1.9e+02 Score=27.16 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=66.2
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEEe-eeCCeEEEEECCCCceeeccccccCCCCCcEEE
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVN-VKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA 292 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~g-g~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~ 292 (387)
.+-++|..+++ -... ++.-. ..+..+.+ +-.=|++. |.+..+.+||++.++-..--.+-..+ -.++.
T Consensus 174 tikIwDlatg~----Lklt--ltGhi---~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~--V~~L~ 242 (460)
T KOG0285|consen 174 TIKIWDLATGQ----LKLT--LTGHI---ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG--VYCLD 242 (460)
T ss_pred eeEEEEcccCe----EEEe--ecchh---heeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce--eEEEe
Confidence 78899999998 3221 11000 11223333 33345553 44578899999887654322211111 01122
Q ss_pred Ee-CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe---CCeEEEEecCCceEEEEEecCC
Q 044903 293 MD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG---GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 293 ~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~---~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.+ --.+.+.++.+..+.+||..++. .|..+..++...+-+.+ +..| +.|..+..|-+||...+
T Consensus 243 lhPTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 243 LHPTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAG 309 (460)
T ss_pred ccccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccC
Confidence 22 12355566778889999998773 23333333433332222 3443 34445666777777643
No 241
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=53.25 E-value=2.1e+02 Score=27.27 Aligned_cols=191 Identities=16% Similarity=0.072 Sum_probs=99.8
Q ss_pred eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903 145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN 223 (387)
Q Consensus 145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t 223 (387)
.+.++|+..+. .+.+.++|..+++-..-.+.. .|+ ..+....++++||+.... ....+.+.|..+
T Consensus 84 ~~~~vyv~~~~-------~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~------~~~~vsvid~~t 149 (381)
T COG3391 84 AGNKVYVTTGD-------SNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGN------GNNTVSVIDAAT 149 (381)
T ss_pred CCCeEEEecCC-------CCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEeccc------CCceEEEEeCCC
Confidence 56678888652 467888886666544322211 121 223334466999986532 234788899998
Q ss_pred CccccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeeeCCeEEEEECCCC-cee-eccccccCCCCCcEEE--EeCCeE
Q 044903 224 GEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVAN-TWD-DMREGMVRGWRGPVAA--MDEEVL 298 (387)
Q Consensus 224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~~-~W~-~~~~~~~~~~~~~~~~--~~~g~l 298 (387)
++.. .+......| ...++. .+.++|+.......+..+|+... .|+ ........+......+ ..+.++
T Consensus 150 ~~~~-~~~~vG~~P-------~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~ 221 (381)
T COG3391 150 NKVT-ATIPVGNTP-------TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRV 221 (381)
T ss_pred CeEE-EEEecCCCc-------ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEE
Confidence 8722 112222112 122222 34569998755578999998766 453 1111112221111222 345679
Q ss_pred EEEeCCC--CeEEEEeCCCCceEEc--cccccccCceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903 299 YGIDENS--CTLSKYDEVMDDWKEV--VKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 299 y~~g~~~--~~v~~yd~~~~~W~~v--~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
|+....+ +.+...|..+..=... .............--+..+|+.-.....+.++|-..
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred EEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 9987655 5888999888644433 111111111222233445555544455566666554
No 242
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=52.69 E-value=18 Score=33.53 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCCCCChHHHHHHHhhhcC-----------hhhHHHhhHhhhhhccCC
Q 044903 41 PLLPGLPDHIAHLCLSHVH-----------PSILHNVCHSWRRLIYSP 77 (387)
Q Consensus 41 ~~~~~LP~dl~~~iL~rLP-----------~~~~r~Vck~W~~li~s~ 77 (387)
..|..||.+++.+|+-|+. ...+..||+.|+.+..+.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 6899999999999999987 335668999999987653
No 243
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=51.90 E-value=2e+02 Score=26.60 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=58.4
Q ss_pred EEEECCEEEEEeee-----C------CeEEEEECCCCceeecccc-ccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC
Q 044903 248 AVGWKGKLCLVNVK-----G------AEGAVYDVVANTWDDMREG-MVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVM 315 (387)
Q Consensus 248 ~v~~~g~lyv~gg~-----~------~~i~~yD~~~~~W~~~~~~-~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~ 315 (387)
.+.-+|.+|+-.-. . ..++.||+ .....++-.. +... .+.+..-.+..+|+.+...+.+++|+.+.
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~-NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIP-NGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEec-CceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 34456777765333 1 46888888 4555555432 2211 22333334457899987778899997763
Q ss_pred ------Cc--eEEccccccccCceeEEEeCCeEEEEec-CCceEEEEEec
Q 044903 316 ------DD--WKEVVKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVK 356 (387)
Q Consensus 316 ------~~--W~~v~~~~~~~~~~~~~~~~~~l~v~gg-~~~~i~v~d~~ 356 (387)
++ +..... .+-..--.++--+|.|++... ++..+.++++.
T Consensus 195 ~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 195 ATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 11 111111 111112345667888886433 34588888888
No 244
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=51.00 E-value=2e+02 Score=26.51 Aligned_cols=166 Identities=14% Similarity=0.039 Sum_probs=80.2
Q ss_pred cEEEeCCCCce-eeCCCC----CCCceeeeEEeeCCEEEEEecC---CCCCCCCCCceEEEEeCCCCccccCeEEcC-C-
Q 044903 166 PLIFDPICRTW-TFGPEL----VTPRRWCAAGYSRGAVYVASGI---GSQFSSDVAKSVEKWDLMNGEKNSRWEKTG-E- 235 (387)
Q Consensus 166 ~~vydp~t~~W-~~l~~~----~~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~-~- 235 (387)
++.+++.+..- +.+++. +..|..-..+.-+|.+|+--.. .........-.++.||+. .. ..++. .
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~----~~~l~~~~ 161 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GG----VVRLLDDD 161 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CC----EEEeecCc
Confidence 35556543333 444332 2334444444445666654322 011011223378889984 33 44443 2
Q ss_pred CCCCcccccceeEEEECC-EEEEEeeeCCeEEEEECCC--------Cceeecc--ccccCCCCCcEEEEeCCeEEEEeCC
Q 044903 236 LKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVA--------NTWDDMR--EGMVRGWRGPVAAMDEEVLYGIDEN 304 (387)
Q Consensus 236 ~~~~~~~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~--------~~W~~~~--~~~~~~~~~~~~~~~~g~ly~~g~~ 304 (387)
+-.+ +.-+..-+| .+|+..-....++.|+... +.+.... ++.+.+ ..+-.+|.+|+....
T Consensus 162 ~~~~-----NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG----~~vDadG~lw~~a~~ 232 (307)
T COG3386 162 LTIP-----NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG----MAVDADGNLWVAAVW 232 (307)
T ss_pred EEec-----CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc----eEEeCCCCEEEeccc
Confidence 2111 122333355 6787755557788887652 1122222 223333 334456789975544
Q ss_pred CC-eEEEEeCCCCceEEccccccccCceeEE-Ee-CCeEEEEecC
Q 044903 305 SC-TLSKYDEVMDDWKEVVKSDLLKGARHAA-AG-GGRVCAVCEN 346 (387)
Q Consensus 305 ~~-~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~-~~~l~v~gg~ 346 (387)
.+ .|.+|+++.+.=.++ .+|.......++ .- .+.|||....
T Consensus 233 ~g~~v~~~~pdG~l~~~i-~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 233 GGGRVVRFNPDGKLLGEI-KLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCceEEEECCCCcEEEEE-ECCCCCCccceEeCCCcCEEEEEecC
Confidence 43 899999984433333 334322222222 21 3678887654
No 245
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=50.36 E-value=2e+02 Score=26.22 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=43.4
Q ss_pred CeEEEEECCCCcee-e--ccccc-cCCCCCcEEEEeC-------CeEEEEeCCCCeEEEEeCCCC-ceEEccccccccCc
Q 044903 263 AEGAVYDVVANTWD-D--MREGM-VRGWRGPVAAMDE-------EVLYGIDENSCTLSKYDEVMD-DWKEVVKSDLLKGA 330 (387)
Q Consensus 263 ~~i~~yD~~~~~W~-~--~~~~~-~~~~~~~~~~~~~-------g~ly~~g~~~~~v~~yd~~~~-~W~~v~~~~~~~~~ 330 (387)
.++.+||+.+++=. . ++... +....-..+++.. +.+|+.+...+.|.+||..++ .|+...........
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 47899999988632 1 12111 1111112233332 478988876778999999886 56555443222223
Q ss_pred eeEEEeCCeEEEE
Q 044903 331 RHAAAGGGRVCAV 343 (387)
Q Consensus 331 ~~~~~~~~~l~v~ 343 (387)
..-...+|..+-.
T Consensus 114 ~~~~~i~g~~~~~ 126 (287)
T PF03022_consen 114 AGPFTIGGESFQW 126 (287)
T ss_dssp SEEEEETTEEEEE
T ss_pred ccceeccCceEec
Confidence 3344456665544
No 246
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.74 E-value=3.2e+02 Score=28.39 Aligned_cols=104 Identities=11% Similarity=0.040 Sum_probs=57.7
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeecccc-c-----cCCCCCcEEEEe---CCeEEEEeCCCCeEEEEeCCCCceEE-c
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREG-M-----VRGWRGPVAAMD---EEVLYGIDENSCTLSKYDEVMDDWKE-V 321 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~-~-----~~~~~~~~~~~~---~g~ly~~g~~~~~v~~yd~~~~~W~~-v 321 (387)
+|+.-|+|-+...+..|+....+-..--.. . ..+.+-...-.. -++|. +..++..|.+||.....-.. +
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL-VTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL-VTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE-EecCCCceEEEeccchhhhhhh
Confidence 688888887777888888877655432110 0 011110111111 12344 44467789999996543222 1
Q ss_pred cccccccCc-eeEEEeCCeEEEEecCCceEEEEEec
Q 044903 322 VKSDLLKGA-RHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 322 ~~~~~~~~~-~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
......... .+....+|+=+|.+..+..+|+|+..
T Consensus 541 KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 541 KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 222222221 23334488888887888999999975
No 247
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.52 E-value=98 Score=33.45 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=59.8
Q ss_pred EEEEeeeCCeEEEEECCCCce---------eeccccccCCCCCcEEEE----eCCeEEEEeCCCCeEEEEeCCCCceEEc
Q 044903 255 LCLVNVKGAEGAVYDVVANTW---------DDMREGMVRGWRGPVAAM----DEEVLYGIDENSCTLSKYDEVMDDWKEV 321 (387)
Q Consensus 255 lyv~gg~~~~i~~yD~~~~~W---------~~~~~~~~~~~~~~~~~~----~~g~ly~~g~~~~~v~~yd~~~~~W~~v 321 (387)
+.+.+..+..|-+|+.-.+.| ..+...++.. ++..+++ ..|.|++-|+ ...|.+||.+++. .+
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~-r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~--~~ 1200 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA-RGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQ--VV 1200 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccC-CCCCeeeehhhhCCeEEecCC-eeEEEEEecccce--eE
Confidence 555554446777887766655 3333322222 2333332 2467777764 6679999998873 33
Q ss_pred cccccccC----ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 322 VKSDLLKG----ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 322 ~~~~~~~~----~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
...|.... ...+-..+|.+++.|-.++.+-+||..-.
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence 34443322 12233456889999888899999998854
No 248
>PF13013 F-box-like_2: F-box-like domain
Probab=49.43 E-value=29 Score=26.59 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.8
Q ss_pred CCCChHHHHHHHhhhcC
Q 044903 43 LPGLPDHIAHLCLSHVH 59 (387)
Q Consensus 43 ~~~LP~dl~~~iL~rLP 59 (387)
+..||+||+..|+..-.
T Consensus 22 l~DLP~ELl~~I~~~C~ 38 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN 38 (109)
T ss_pred hhhChHHHHHHHHhhcC
Confidence 78899999999997665
No 249
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=49.31 E-value=2.1e+02 Score=26.20 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC--CeEEEEECCC
Q 044903 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--AEGAVYDVVA 272 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~--~~i~~yD~~~ 272 (387)
+|...+....++ ++..||..+.. -...-....-... ...........+.+... ..|...++.+
T Consensus 25 ~G~~litss~dD--------sl~LYd~~~g~----~~~ti~skkyG~~---~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 25 DGLLLITSSEDD--------SLRLYDSLSGK----QVKTINSKKYGVD---LACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCCEEEEecCCC--------eEEEEEcCCCc----eeeEeeccccccc---EEEEecCCceEEEccCCCCCceEEEEeec
Q ss_pred CceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEE
Q 044903 273 NTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVV 352 (387)
Q Consensus 273 ~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v 352 (387)
++.-..=.+-......-++.-.+ ..|+-+..++.|..||.... +..+-+.....+.++.--.|-|+.++-++..|-+
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~--~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVK--KCQGLLNLSGRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCC--CCceEEecCCCcceeECCCCcEEEEecCCCeEEE
Q ss_pred EEecCCCCC
Q 044903 353 VDVKAAAAP 361 (387)
Q Consensus 353 ~d~~~~~~~ 361 (387)
||+..-++|
T Consensus 167 yD~Rs~dkg 175 (311)
T KOG1446|consen 167 YDLRSFDKG 175 (311)
T ss_pred EEecccCCC
No 250
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=46.69 E-value=3.4e+02 Score=27.76 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=67.0
Q ss_pred CCEEEEEeeeCCeEEEEECCCCce------eeccc-cccCCCC--CcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTW------DDMRE-GMVRGWR--GPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEV 321 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W------~~~~~-~~~~~~~--~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v 321 (387)
++.+.+-||.+..|.++|..+..= ..+.. .+..|.. -.+.++. .+.+++-|+..+.+.+||+.+. +++
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--~ki 206 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--KKI 206 (735)
T ss_pred CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc--cce
Confidence 566777788888888888875522 22221 1111111 2234432 2357777777888999999877 344
Q ss_pred cccccccCcee--EEEeCCeEEEEecCCceEEEEEecCC--------CCCceeEEcCCCCce
Q 044903 322 VKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA--------AAPTIFVVDTPLGFE 373 (387)
Q Consensus 322 ~~~~~~~~~~~--~~~~~~~l~v~gg~~~~i~v~d~~~~--------~~~~~W~~~~~~~~~ 373 (387)
..+..++.... ++.-+|.=++-++.++.|-+||.... -....|.+..-+.|.
T Consensus 207 mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~ 268 (735)
T KOG0308|consen 207 MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT 268 (735)
T ss_pred eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence 44444444433 33345666666566666777766532 111367764445544
No 251
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=46.56 E-value=1.9e+02 Score=26.68 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=73.1
Q ss_pred CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceee-ccccccCCCCCc
Q 044903 213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDD-MREGMVRGWRGP 289 (387)
Q Consensus 213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~~~~~~ 289 (387)
...+..||..|-+ --.-.. |..... .....|-+ .|+||+.+..+..|..+|-.+++... +.. ...+..-.
T Consensus 237 Hp~~rlYdv~T~Q----cfvsan-Pd~qht-~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-AH~gsevc 309 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQ----CFVSAN-PDDQHT-GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN-AHGGSEVC 309 (430)
T ss_pred CCceeEEecccee----EeeecC-cccccc-cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh-hcCCceee
Confidence 3467889998877 433332 333211 11222222 57899998877788888877776532 221 12221122
Q ss_pred EEEEeCCeEEEEe-CCCCeEEEEeCCCCceEEcc----ccccccCceeEEEe--CCeEEEEecCCceEEEEEecCCCCCc
Q 044903 290 VAAMDEEVLYGID-ENSCTLSKYDEVMDDWKEVV----KSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVKAAAAPT 362 (387)
Q Consensus 290 ~~~~~~g~ly~~g-~~~~~v~~yd~~~~~W~~v~----~~~~~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~~~~~~~ 362 (387)
+++.-.+.-|++. |.+..+..|...+.+=...- ..........++.. ++.++..-.....+-.||..+..+-.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 3333344446654 45566888888776433221 11111112222222 23333332335677778877653334
Q ss_pred eeE
Q 044903 363 IFV 365 (387)
Q Consensus 363 ~W~ 365 (387)
.|.
T Consensus 390 l~s 392 (430)
T KOG0640|consen 390 LLS 392 (430)
T ss_pred hcc
Confidence 343
No 252
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=46.17 E-value=2.7e+02 Score=26.56 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=69.1
Q ss_pred CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EE
Q 044903 213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VA 291 (387)
Q Consensus 213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~ 291 (387)
.+.+.++|..|++. -..+. .|.-.+ ......||.+.+....+..+-++|+.+++=..... ...|.... ++
T Consensus 153 Dn~v~iWnv~tgea---li~l~-hpd~i~----S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Rai 223 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA---LITLD-HPDMVY----SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAI 223 (472)
T ss_pred CceEEEEeccCCce---eeecC-CCCeEE----EEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeE
Confidence 34778888888872 11222 222211 11223467777666666899999998875332221 23333222 33
Q ss_pred EEeCCeEEEEeC---CCCeEEEEeCCCCceEEcccccccc-CceeEE-Ee---CCeEEEEecCCceEEEEEecCC
Q 044903 292 AMDEEVLYGIDE---NSCTLSKYDEVMDDWKEVVKSDLLK-GARHAA-AG---GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 292 ~~~~g~ly~~g~---~~~~v~~yd~~~~~W~~v~~~~~~~-~~~~~~-~~---~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
-+.++.++..|- ....+-.||+++-. +-.....+. ....+. .+ .+-||+.|.++++|--|++.+.
T Consensus 224 fl~~g~i~tTGfsr~seRq~aLwdp~nl~--eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 224 FLASGKIFTTGFSRMSERQIALWDPNNLE--EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EeccCceeeeccccccccceeccCccccc--CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 344556555542 12357888876431 100111111 111111 12 2347888777888888888843
No 253
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=45.74 E-value=2.2e+02 Score=25.32 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=85.5
Q ss_pred ceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC---ceeeCCCCCCC---------ceeeeEEeeCCEEEEEecCCC
Q 044903 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR---TWTFGPELVTP---------RRWCAAGYSRGAVYVASGIGS 206 (387)
Q Consensus 139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~---~W~~l~~~~~~---------r~~~~~~~~~~~iyv~GG~~~ 206 (387)
|..-++.+|.+|.-.+ ....+..||..+. .|..+|.+... ......++..+-++|+=-..+
T Consensus 70 gTg~VVynGs~yynk~-------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~ 142 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKA-------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPE 142 (249)
T ss_pred ccceEEEcceEEeecc-------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccc
Confidence 3556777777777543 2356788999884 45566654311 122444555566776644322
Q ss_pred CCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---CeE-EEEECCCCceeeccccc
Q 044903 207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEG-AVYDVVANTWDDMREGM 282 (387)
Q Consensus 207 ~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i-~~yD~~~~~W~~~~~~~ 282 (387)
. +....+...|+.+-+..-+|..--+-+ ....+.++=|.+|++-... ..| .+||..+++=+.++..+
T Consensus 143 ~---~g~iv~skLdp~tl~~e~tW~T~~~k~------~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf 213 (249)
T KOG3545|consen 143 N---AGTIVLSKLDPETLEVERTWNTTLPKR------SAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPF 213 (249)
T ss_pred c---CCcEEeeccCHHHhheeeeeccccCCC------CcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccccc
Confidence 1 111223445553222111265433221 1133555668888885543 223 68999988776666434
Q ss_pred cCCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 044903 283 VRGWRGPVAA---MDEEVLYGIDENSCTLSKYDEV 314 (387)
Q Consensus 283 ~~~~~~~~~~---~~~g~ly~~g~~~~~v~~yd~~ 314 (387)
+......+++ -.+.+||+. ++|.+..|++.
T Consensus 214 ~N~y~~~~~idYNP~D~~LY~w--dng~~l~y~l~ 246 (249)
T KOG3545|consen 214 PNPYSYATMIDYNPRDRRLYAW--DNGHQLTYNLT 246 (249)
T ss_pred cchhhhhhccCCCcccceeeEe--cCCcEEEEEeE
Confidence 4443333333 235689998 46778888764
No 254
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=41.35 E-value=91 Score=30.76 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=46.4
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEcccccc-ccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL-LKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
+|....+|..+|.+.+||.++.+ .+..+.. .....++..+++.++..|..+..|..+|+...
T Consensus 228 ~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 228 DGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred CCCEEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecc
Confidence 46778888888999999987652 2333333 34456777889999999888999999998844
No 255
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=41.29 E-value=2.7e+02 Score=25.16 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=71.4
Q ss_pred CEEEEEecCCCCCCCCCCceEEEEeCC-CCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903 196 GAVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA 272 (387)
Q Consensus 196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~-t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~ 272 (387)
|.|+..+|.+. .+-+++.. .+. |.-..-+-.. .. .....++. .|++.+.+.++..+.+|--..
T Consensus 27 g~ilAscg~Dk--------~vriw~~~~~~s----~~ck~vld~~-hk-rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 27 GVILASCGTDK--------AVRIWSTSSGDS----WTCKTVLDDG-HK-RSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred ceEEEeecCCc--------eEEEEecCCCCc----EEEEEecccc-ch-heeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 44565555543 56677766 566 7655433221 00 11223343 566555555555555555556
Q ss_pred CceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCC-CCceEEccccccccCceeEEEeCC--eEEEEecCCc
Q 044903 273 NTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEV-MDDWKEVVKSDLLKGARHAAAGGG--RVCAVCENGG 348 (387)
Q Consensus 273 ~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~-~~~W~~v~~~~~~~~~~~~~~~~~--~l~v~gg~~~ 348 (387)
+.|+.+...-.....--+++ ..+|.+......+..+++|... .++...+..+..+..-...+.... .|++-++.++
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 66665542100001111222 3345555555567789998654 456666665544443333444333 3444434445
Q ss_pred eEEEEEec
Q 044903 349 GIVVVDVK 356 (387)
Q Consensus 349 ~i~v~d~~ 356 (387)
.|-+|+-.
T Consensus 173 TIk~~~~~ 180 (312)
T KOG0645|consen 173 TIKVYRDE 180 (312)
T ss_pred eEEEEeec
Confidence 55555433
No 256
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=40.74 E-value=77 Score=29.18 Aligned_cols=61 Identities=10% Similarity=-0.014 Sum_probs=42.5
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903 295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.|.+..+|..+|.+..||..|.. +..+ .-+..+.++. .-+|+.++....+..+..||+..+
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred CcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 46677788889999999998875 2221 1122222222 448888888888899999999865
No 257
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=39.11 E-value=4e+02 Score=26.43 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=55.3
Q ss_pred EEEEEeeeCCeEEEEECCCCceeeccccccCCCCC--cEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCce
Q 044903 254 KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG--PVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR 331 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~--~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~ 331 (387)
.+.+..|.+ .+.-++++.+.-.+....+...-.. .+++..++-=.+.|..+|.|.+|++.+..-++... ....+-+
T Consensus 214 nliit~Gk~-H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~ 291 (626)
T KOG2106|consen 214 NLIITCGKG-HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVF 291 (626)
T ss_pred cEEEEeCCc-eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceE
Confidence 344443433 5666677777665444322111111 12333333234455567889999998887766444 3344456
Q ss_pred eEEEe-CCeEEEEecCCceEEEEE
Q 044903 332 HAAAG-GGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 332 ~~~~~-~~~l~v~gg~~~~i~v~d 354 (387)
++... +|.|+- ||.+..|..||
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd 314 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWD 314 (626)
T ss_pred EEEEecCccEee-cCccceEEecc
Confidence 66655 455554 88888898887
No 258
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=39.04 E-value=4.9e+02 Score=27.49 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=42.2
Q ss_pred eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE
Q 044903 246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE 320 (387)
Q Consensus 246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~ 320 (387)
...+..+..+||....++..++||..+-.=-.+...++.. -.+++... -|++......|++|--.+..|..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~--I~alas~~--~~vy~A~g~~i~~~~rgk~i~~~ 109 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDK--ITALASDK--DYVYVASGNKIYAYARGKHIRHT 109 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCc--eEEEEecC--ceEEEecCcEEEEEEccceEEEE
Confidence 4456678889998888889999998765554444333433 23344333 34444345567777555444433
No 259
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=38.14 E-value=44 Score=29.90 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=17.4
Q ss_pred CCCCCChHHHHHHHhhhcC
Q 044903 41 PLLPGLPDHIAHLCLSHVH 59 (387)
Q Consensus 41 ~~~~~LP~dl~~~iL~rLP 59 (387)
..+..||.|++.+||.|||
T Consensus 200 ltl~dLP~e~vl~Il~rls 218 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLS 218 (332)
T ss_pred CCcccchHHHHHHHHHHcc
Confidence 4578899999999999999
No 260
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=37.65 E-value=3.7e+02 Score=25.60 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=38.1
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccc---cccCCCCCcEEEEeCCeEEEEeC-----------------CCCeEEEE
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMRE---GMVRGWRGPVAAMDEEVLYGIDE-----------------NSCTLSKY 311 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~---~~~~~~~~~~~~~~~g~ly~~g~-----------------~~~~v~~y 311 (387)
+|.+||...+- .+++-+++.+.=+.+.. +-+.......-+.-+|.+|..+. .+|++..|
T Consensus 126 ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~Y 204 (376)
T KOG1520|consen 126 GGDLYVADAYL-GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRY 204 (376)
T ss_pred CCeEEEEecce-eeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEe
Confidence 45888886553 45666676665332221 11111112222233566666653 34679999
Q ss_pred eCCCCceEEcc
Q 044903 312 DEVMDDWKEVV 322 (387)
Q Consensus 312 d~~~~~W~~v~ 322 (387)
|+.++.=+.+.
T Consensus 205 D~~tK~~~VLl 215 (376)
T KOG1520|consen 205 DPSTKVTKVLL 215 (376)
T ss_pred cCcccchhhhh
Confidence 99998665543
No 261
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.30 E-value=3.7e+02 Score=26.93 Aligned_cols=60 Identities=8% Similarity=0.172 Sum_probs=39.3
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE--EeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
+....++|-.+..+..||..++.=......+. +..+ -.+|.++++++..|.+..||..-+
T Consensus 270 ~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~-----P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 270 SEDKLVLGCEDGSIILYDTTRGVTLLAKAEFI-----PTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ccceEEEEecCCeEEEEEcCCCeeeeeeeccc-----ceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 45566776666799999998774332222121 2222 236788999988899999997654
No 262
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=37.15 E-value=99 Score=29.17 Aligned_cols=61 Identities=18% Similarity=0.082 Sum_probs=42.6
Q ss_pred EEEEeCCCCeEEEEeCCCCceE-EccccccccCceeEEEeC---CeEEEEecCCceEEEEEecCC
Q 044903 298 LYGIDENSCTLSKYDEVMDDWK-EVVKSDLLKGARHAAAGG---GRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 298 ly~~g~~~~~v~~yd~~~~~W~-~v~~~~~~~~~~~~~~~~---~~l~v~gg~~~~i~v~d~~~~ 358 (387)
+...|+++|.+.+||+.+-+-. .|.....++.+..++.+. ..++.++|.+++|-+||++-.
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 5666778899999998654333 122223345556666664 889999899999999998844
No 263
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=37.11 E-value=1.7e+02 Score=29.74 Aligned_cols=93 Identities=10% Similarity=-0.051 Sum_probs=46.0
Q ss_pred CeEEEEECCCCceeeccccccCCCCCc-EEEEeCCeEEEEeCCC----CeEEEEeCCCCceEEccc-----cccccCcee
Q 044903 263 AEGAVYDVVANTWDDMREGMVRGWRGP-VAAMDEEVLYGIDENS----CTLSKYDEVMDDWKEVVK-----SDLLKGARH 332 (387)
Q Consensus 263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~~g~ly~~g~~~----~~v~~yd~~~~~W~~v~~-----~~~~~~~~~ 332 (387)
..+.+|.|.+..=..-...-+.+.++. ..-+++|++.++.|.+ ..+.+||..+-.-..+.. .|...-.
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP-- 819 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP-- 819 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccc--
Confidence 567889887654222221123333333 3347888877776643 248889876543221111 0111001
Q ss_pred EEEeC-CeEEEEecCCceEEEEEecC
Q 044903 333 AAAGG-GRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 333 ~~~~~-~~l~v~gg~~~~i~v~d~~~ 357 (387)
-.-.+ +-+++.|.++..+++|++..
T Consensus 820 ~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 820 HYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cccCCCceEEEecCCCceEEEEEecC
Confidence 11223 33555544556677777763
No 264
>PRK02888 nitrous-oxide reductase; Validated
Probab=37.02 E-value=4.8e+02 Score=26.80 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=36.7
Q ss_pred CCeEEEEeCCC---CceEEccccccccCceeEEE-eCC-eEEEEecCCceEEEEEecCC
Q 044903 305 SCTLSKYDEVM---DDWKEVVKSDLLKGARHAAA-GGG-RVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 305 ~~~v~~yd~~~---~~W~~v~~~~~~~~~~~~~~-~~~-~l~v~gg~~~~i~v~d~~~~ 358 (387)
.+.|.+.|..+ ..+..+...|..+.++++.. -+| .+|+.|+.+..+-|+|+++.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 46788999887 13555556666666655553 344 56666666899999999964
No 265
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=36.35 E-value=1.2e+02 Score=25.64 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=35.6
Q ss_pred CCeEEEEeC-CCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCC---ceEEEEEecCC
Q 044903 295 EEVLYGIDE-NSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG---GGIVVVDVKAA 358 (387)
Q Consensus 295 ~g~ly~~g~-~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~---~~i~v~d~~~~ 358 (387)
+.++.++.| ....+..||.+. +.+...+........-..+|+.++++|.+ +.+.+||+.+.
T Consensus 71 g~~favi~g~~~~~v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCEEEEEEccCCcccEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 345555543 345799999963 33333332222233445578888877643 56899999843
No 266
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=36.22 E-value=2e+02 Score=22.11 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=41.1
Q ss_pred EEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccc
Q 044903 257 LVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVK 323 (387)
Q Consensus 257 v~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~ 323 (387)
++|..+..|-+|+-+.-.++...... -.+++..++.-|..+-.+|+|-+|+-..+.|..-..
T Consensus 19 lvGs~D~~IRvf~~~e~~~Ei~e~~~-----v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK 80 (111)
T PF14783_consen 19 LVGSDDFEIRVFKGDEIVAEITETDK-----VTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSK 80 (111)
T ss_pred EEecCCcEEEEEeCCcEEEEEecccc-----eEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccC
Confidence 44555578888876655555433211 224444455557777688999999999999987543
No 267
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=36.15 E-value=3.6e+02 Score=25.04 Aligned_cols=143 Identities=14% Similarity=0.279 Sum_probs=66.8
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEEC-CCCceeeccccccCCCCCcE
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDV-VANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~-~~~~W~~~~~~~~~~~~~~~ 290 (387)
.+++|....++. |+....+.+.-.. ..++-. .++|. -++.+...+++.. ...+|......+...+...+
T Consensus 33 evhiy~~~~~~~---w~~~htls~Hd~~---vtgvdWap~snrIv-tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~ 105 (361)
T KOG1523|consen 33 EVHIYSMLGADL---WEPAHTLSEHDKI---VTGVDWAPKSNRIV-TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATC 105 (361)
T ss_pred eEEEEEecCCCC---ceeceehhhhCcc---eeEEeecCCCCcee-EccCCCCccccccCCCCeeccceeEEEeccceee
Confidence 667776555441 7766544322110 111111 12332 2333344566665 66788866543333322111
Q ss_pred EE-EeCCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCc------------eeEEEeCCeEEEEecCCceEEEEEe
Q 044903 291 AA-MDEEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGA------------RHAAAGGGRVCAVCENGGGIVVVDV 355 (387)
Q Consensus 291 ~~-~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~------------~~~~~~~~~l~v~gg~~~~i~v~d~ 355 (387)
+- .-.+..|.+|+... .|+-|.-+++-|..-..-.+.+.. .++...+++..|| ..|+-++
T Consensus 106 V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf-----SayIK~V 180 (361)
T KOG1523|consen 106 VKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF-----SAYIKGV 180 (361)
T ss_pred EeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEE-----EEeeecc
Confidence 11 22455777775433 355667777766543322233322 1222334444444 3455566
Q ss_pred cCCCCCceeEEcCC
Q 044903 356 KAAAAPTIFVVDTP 369 (387)
Q Consensus 356 ~~~~~~~~W~~~~~ 369 (387)
++.+.+.-|.-.+|
T Consensus 181 dekpap~pWgsk~P 194 (361)
T KOG1523|consen 181 DEKPAPTPWGSKMP 194 (361)
T ss_pred ccCCCCCCCccCCc
Confidence 66655555664444
No 268
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.71 E-value=1.5e+02 Score=30.00 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=38.5
Q ss_pred CCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEEEeCC-eEEEEeCCCCeEEEEeCCCCce
Q 044903 252 KGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEE-VLYGIDENSCTLSKYDEVMDDW 318 (387)
Q Consensus 252 ~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g-~ly~~g~~~~~v~~yd~~~~~W 318 (387)
+++=|++.|.+ ..+-+.|-++.+..+.-.+-... -..++.+.. -|.+.|+++|++..|+..+-+-
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N--vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN--VSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHhhccccc--ceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 44667776655 77788888877664432211111 112233322 3667778899999998776533
No 269
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=35.30 E-value=3.5e+02 Score=24.69 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=56.8
Q ss_pred EEEEeeeCCeEEEEECCCCceeeccccccCCCCCcE----EEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccc-ccC
Q 044903 255 LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV----AAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL-LKG 329 (387)
Q Consensus 255 lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~----~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~-~~~ 329 (387)
+++.|+.+ .....+..-+.|+.++.....+.+... .-...+.+|+.|. .|.+..--....+|++....+. ...
T Consensus 228 ~la~g~qg-~~f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~-gGnvl~StdgG~t~skd~g~~er~s~ 305 (339)
T COG4447 228 LLARGGQG-DQFSWVCGGDEWSDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGI-GGNVLASTDGGTTWSKDGGVEERVSN 305 (339)
T ss_pred eEEEcccc-ceeecCCCcccccccccchhcccCCCccccccccCCCCeEEecc-CccEEEecCCCeeEeccCChhhhhhh
Confidence 44445433 334445567899988743333321111 1133567888875 6777777667788997765443 332
Q ss_pred ceeEEEe-CCeEEEEecCCceEEEEEecC
Q 044903 330 ARHAAAG-GGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 330 ~~~~~~~-~~~l~v~gg~~~~i~v~d~~~ 357 (387)
.+.++.. .++.+++ |.++-+.-|++.+
T Consensus 306 l~~V~~ts~~~~~l~-Gq~Gvll~~n~~a 333 (339)
T COG4447 306 LYSVVFTSPKAGFLC-GQKGVLLKYNPGA 333 (339)
T ss_pred hheEEeccCCceEEE-cCCceEEEecCcc
Confidence 3444444 5567777 5566667776653
No 270
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.11 E-value=4.5e+02 Score=28.21 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=30.9
Q ss_pred EEEEeeeCC--eEEEEECCCCceeeccccccCCCCCcEEEEeCC--eEEEEeCCCCeEEEEeCCCC
Q 044903 255 LCLVNVKGA--EGAVYDVVANTWDDMREGMVRGWRGPVAAMDEE--VLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 255 lyv~gg~~~--~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g--~ly~~g~~~~~v~~yd~~~~ 316 (387)
+.|-|+.+. .++.++ ++..|+.-. +.--....+.+++.. .+.+-.++++.+.+||++++
T Consensus 220 liVSG~DDRqVKlWrmn-etKaWEvDt--crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMN-ETKAWEVDT--CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred eEEecCCcceeeEEEec-cccceeehh--hhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 344444443 344443 567776432 111111223344433 46666677889999998765
No 271
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=34.89 E-value=4.7e+02 Score=25.98 Aligned_cols=41 Identities=12% Similarity=0.035 Sum_probs=24.6
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeC-CEEEEEecCCC
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSR-GAVYVASGIGS 206 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~-~~iyv~GG~~~ 206 (387)
..+.+|++.+++-.+-.- -.+-.-++.+... |+|.- ||.+.
T Consensus 267 G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDR 308 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDR 308 (626)
T ss_pred ceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccc
Confidence 457899998888766433 2333345555554 45544 77755
No 272
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=34.50 E-value=99 Score=18.10 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=18.1
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCce
Q 044903 295 EEVLYGIDENSCTLSKYDEVMDDW 318 (387)
Q Consensus 295 ~g~ly~~g~~~~~v~~yd~~~~~W 318 (387)
+++||+.....+.|.++|+++.+-
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeE
Confidence 467888876678899999976543
No 273
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=34.29 E-value=4.3e+02 Score=25.44 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=60.1
Q ss_pred EEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEcccccc
Q 044903 248 AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL 326 (387)
Q Consensus 248 ~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~ 326 (387)
+.-.+|.+...||.+...-+.|+.+..-...=.+-... -.++. ..+|.....|+.++.+.+||+...+= +..+|-
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~--I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--ly~ipA 385 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE--ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--LYTIPA 385 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEecccccc--eeeEeECCCceEEeecCCCCcEEEeeeccccc--ceeccc
Confidence 44468999999988777778888777655432211100 01111 34677777777889999999976632 444444
Q ss_pred ccCc---eeEEEeCCeEEEEecCCceEEEEEec
Q 044903 327 LKGA---RHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 327 ~~~~---~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
+..- ...-.-.|+.++.++.++.+-+|...
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 3321 11112345566665555555555544
No 274
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=34.08 E-value=3.4e+02 Score=24.93 Aligned_cols=91 Identities=12% Similarity=0.190 Sum_probs=48.5
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD 294 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~ 294 (387)
.+.++|..|-+ =...-.|+.-.+. ...+.+....+|...|-.+..+..-|..++.....-.+-.. -.+++.
T Consensus 125 tlKVWDtnTlQ----~a~~F~me~~VYs-hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~----~vlaV~ 195 (397)
T KOG4283|consen 125 TLKVWDTNTLQ----EAVDFKMEGKVYS-HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD----GVLAVE 195 (397)
T ss_pred eEEEeecccce----eeEEeecCceeeh-hhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC----ceEEEE
Confidence 56677776665 3333344444333 22233344456666666667788888888887765332222 222221
Q ss_pred ----CCeEEEEeCCCCeEEEEeCC
Q 044903 295 ----EEVLYGIDENSCTLSKYDEV 314 (387)
Q Consensus 295 ----~g~ly~~g~~~~~v~~yd~~ 314 (387)
.+-+...|+.++.+..||..
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIR 219 (397)
T ss_pred eccCceeEEEecCCCceEEEEEee
Confidence 22334445566777777764
No 275
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=33.68 E-value=3.9e+02 Score=24.78 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=58.7
Q ss_pred CCEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcEEE----EeCCeEEEEeCCCCeEEEEeC-CCCceEEccccc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSKYDE-VMDDWKEVVKSD 325 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~----~~~g~ly~~g~~~~~v~~yd~-~~~~W~~v~~~~ 325 (387)
++....++-..+.+++|....+. |+.....-... ..... -..++|.-. +.+..-++|.. +..+|+....+-
T Consensus 21 drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap~snrIvtc-s~drnayVw~~~~~~~WkptlvLl 97 (361)
T KOG1523|consen 21 DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAPKSNRIVTC-SHDRNAYVWTQPSGGTWKPTLVLL 97 (361)
T ss_pred CCceEEeccCCceEEEEEecCCCCceeceehhhhC--cceeEEeecCCCCceeEc-cCCCCccccccCCCCeeccceeEE
Confidence 34444554444688999888777 98765311111 11111 112344333 34667888877 889999977766
Q ss_pred cccCceeEEEe--CCeEEEEecCCceEEEE
Q 044903 326 LLKGARHAAAG--GGRVCAVCENGGGIVVV 353 (387)
Q Consensus 326 ~~~~~~~~~~~--~~~l~v~gg~~~~i~v~ 353 (387)
++-++..++.+ .+..|++|++...|-|.
T Consensus 98 RiNrAAt~V~WsP~enkFAVgSgar~isVc 127 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGSGARLISVC 127 (361)
T ss_pred EeccceeeEeecCcCceEEeccCccEEEEE
Confidence 66666666654 56677776666555443
No 276
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=33.32 E-value=6.6e+02 Score=27.28 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=81.6
Q ss_pred CEEEEEcCccC---CCCCCCCccEEEeCCC-CceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903 147 GKLILLAATTH---NFNPALTRPLIFDPIC-RTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM 222 (387)
Q Consensus 147 ~~l~v~GG~~~---~~~~~~~~~~vydp~t-~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~ 222 (387)
+..|++|..-. ........+.+|.... ++-+.++++...-.-.+.+..+|++.+.-| ..+-.|+..
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In----------~~vrLye~t 856 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGIN----------QSVRLYEWT 856 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecC----------cEEEEEEcc
Confidence 45677765322 1122344556665554 666667666544444555666777765433 266777766
Q ss_pred CCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEE
Q 044903 223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGI 301 (387)
Q Consensus 223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~ 301 (387)
+++. -+.-.+...+. .....-+.++.|++-.-.. -.+..|+...+...+++......|.. ++...++..|+.
T Consensus 857 ~~~e---Lr~e~~~~~~~---~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt-aveil~~d~ylg 929 (1096)
T KOG1897|consen 857 TERE---LRIECNISNPI---IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT-AVEILDDDTYLG 929 (1096)
T ss_pred ccce---ehhhhcccCCe---EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee-eEEEecCceEEe
Confidence 6630 11111111111 0122334466777654433 56788999999999998766666642 334556777887
Q ss_pred eCCCCeEE
Q 044903 302 DENSCTLS 309 (387)
Q Consensus 302 g~~~~~v~ 309 (387)
+.+.+.++
T Consensus 930 ae~~gNlf 937 (1096)
T KOG1897|consen 930 AENSGNLF 937 (1096)
T ss_pred ecccccEE
Confidence 76666543
No 277
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=33.23 E-value=3e+02 Score=23.23 Aligned_cols=100 Identities=14% Similarity=0.010 Sum_probs=52.4
Q ss_pred CEEEEEeeeCCeEEEEECCCCcee---eccc-cccC-CCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEc----
Q 044903 253 GKLCLVNVKGAEGAVYDVVANTWD---DMRE-GMVR-GWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEV---- 321 (387)
Q Consensus 253 g~lyv~gg~~~~i~~yD~~~~~W~---~~~~-~~~~-~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v---- 321 (387)
|++|++-| ...+.||..+..+. .+.. +.+. ...-.++... ++++|++. ....++||..+++...-
T Consensus 63 ~~~yfFkg--~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFk--g~~y~ry~~~~~~v~~~yP~~ 138 (194)
T cd00094 63 GKIYFFKG--DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFK--GDKYWRYDEKTQKMDPGYPKL 138 (194)
T ss_pred CEEEEECC--CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEe--CCEEEEEeCCCccccCCCCcc
Confidence 88999865 36778876542221 1111 1110 0011222223 57899995 45789998765543211
Q ss_pred -cc-cc-cccCceeEEEe-CCeEEEEecCCceEEEEEecCC
Q 044903 322 -VK-SD-LLKGARHAAAG-GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 322 -~~-~~-~~~~~~~~~~~-~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.. -+ .....-++... ++++|++ .|...+.||....
T Consensus 139 i~~~w~g~p~~idaa~~~~~~~~yfF--~g~~y~~~d~~~~ 177 (194)
T cd00094 139 IETDFPGVPDKVDAAFRWLDGYYYFF--KGDQYWRFDPRSK 177 (194)
T ss_pred hhhcCCCcCCCcceeEEeCCCcEEEE--ECCEEEEEeCccc
Confidence 00 00 01111223334 4899999 5778888888754
No 278
>PRK10115 protease 2; Provisional
Probab=32.91 E-value=5.9e+02 Score=26.58 Aligned_cols=183 Identities=7% Similarity=-0.087 Sum_probs=88.2
Q ss_pred CCCccEEEeCCCCcee--eCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeC--CCCccccCeEEcCCC
Q 044903 162 ALTRPLIFDPICRTWT--FGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDL--MNGEKNSRWEKTGEL 236 (387)
Q Consensus 162 ~~~~~~vydp~t~~W~--~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~--~t~~~~~~W~~~~~~ 236 (387)
...+++.++..|..-. .+-.-+........... +++..++..... ..+.+..|+. .+.. |..+.+.
T Consensus 197 ~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~----~~~~~~~ 267 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAE----PFVFLPR 267 (686)
T ss_pred CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCC----ceEEEEC
Confidence 3367899999887322 22111111222222222 344333333221 2346777773 2344 4433322
Q ss_pred CCCcccccceeEEEECCEEEEEeeeC---CeEEEEECC-CCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEE
Q 044903 237 KDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVV-ANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSK 310 (387)
Q Consensus 237 ~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~-~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~ 310 (387)
+... .......++.+|+..-.+ ..+...++. .+.|+.+-+. .....-..+.+.++.|++.....+ .+++
T Consensus 268 ~~~~----~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 268 RKDH----EYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLFTDWLVVEERQRGLTSLRQ 342 (686)
T ss_pred CCCC----EEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEECCEEEEEEEeCCEEEEEE
Confidence 2211 133334568899886543 567777776 5789877542 112112234455777877765444 4788
Q ss_pred EeCCCCceEEcc-ccccccCceeEE-EeC-CeEEEEecC---CceEEEEEecCC
Q 044903 311 YDEVMDDWKEVV-KSDLLKGARHAA-AGG-GRVCAVCEN---GGGIVVVDVKAA 358 (387)
Q Consensus 311 yd~~~~~W~~v~-~~~~~~~~~~~~-~~~-~~l~v~gg~---~~~i~v~d~~~~ 358 (387)
+|..+.....+. ..+......... ..+ +.+++.-.. -..++.+|+.++
T Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 343 INRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 887665555443 111111000010 122 344443221 367889998754
No 279
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.57 E-value=4e+02 Score=24.49 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=81.4
Q ss_pred cceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCC-CceeeeEEee-CC-EEEEEecC-CCC--C---
Q 044903 138 LPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT-PRRWCAAGYS-RG-AVYVASGI-GSQ--F--- 208 (387)
Q Consensus 138 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~-~r~~~~~~~~-~~-~iyv~GG~-~~~--~--- 208 (387)
+||.+.+.+|.++..--.+. +..-.-+-+||.. +..+++.+.+. ...-|-.... ++ .+.|++|. ..+ +
T Consensus 116 yGHGvfs~dG~~LYATEndf--d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~ 192 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDF--DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRT 192 (366)
T ss_pred ecccccCCCCcEEEeecCCC--CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCcc
Confidence 46777777776544322111 2222335789987 78888877763 3333333333 34 45566552 222 1
Q ss_pred --CCC-CCceEEEEeCCCCccccCeEEcCCCCC--CcccccceeEEEECCEEEEEeeeC----------------CeEEE
Q 044903 209 --SSD-VAKSVEKWDLMNGEKNSRWEKTGELKD--GRFSREAIDAVGWKGKLCLVNVKG----------------AEGAV 267 (387)
Q Consensus 209 --~~~-~~~~v~vyd~~t~~~~~~W~~~~~~~~--~~~~~~~~~~v~~~g~lyv~gg~~----------------~~i~~ 267 (387)
+.+ ...+....|-.++. --+...||. .+.+. -|-..--+|.+.+-.-+. ..++.
T Consensus 193 ~lNldsMePSlvlld~atG~----liekh~Lp~~l~~lSi-RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~ 267 (366)
T COG3490 193 ELNLDSMEPSLVLLDAATGN----LIEKHTLPASLRQLSI-RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEF 267 (366)
T ss_pred ccchhhcCccEEEEeccccc----hhhhccCchhhhhcce-eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcc
Confidence 111 12244445656665 333334441 11111 133333455554332111 33455
Q ss_pred EECCCCceeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903 268 YDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS 324 (387)
Q Consensus 268 yD~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~ 324 (387)
+|...++|..+..- -.++++. ++-+-+.....+....||.++..-.....+
T Consensus 268 ~~~pee~~~~~anY------igsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 268 LDLPEEQTAAFANY------IGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred cCCCHHHHHHHHhh------hhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc
Confidence 55555566554420 1133333 232333333445688899998865554333
No 280
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.56 E-value=4.1e+02 Score=24.61 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=34.0
Q ss_pred EEEeCCCCeEEEEeCCCCceEEcccccc-ccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 299 YGIDENSCTLSKYDEVMDDWKEVVKSDL-LKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.+-|.++..+.+||+.+..= .+..... ...+-..+..+++|..+-..+.++-+||+...
T Consensus 371 vVSgSDDrTvKvWdLrNMRs-plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRS-PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred eeecCCCceEEEeeeccccC-cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 34455667899999875421 1111000 00122345556778888666788999999844
No 281
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=32.52 E-value=6.5e+02 Score=26.92 Aligned_cols=127 Identities=9% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCce
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR 331 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~ 331 (387)
+|.+.+..|....+.+++...+. +.|..+...........+....++.+...+.|.+|......=..+-..--.....
T Consensus 24 ~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~ 101 (933)
T KOG1274|consen 24 DGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRD 101 (933)
T ss_pred CCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceE
Q ss_pred eEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCceeeEEEecccc
Q 044903 332 HAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRM 383 (387)
Q Consensus 332 ~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 383 (387)
.++..+|+..++|+.+..|-+++.. ..+++-...-..+ .+.++.-.|-+
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~--D~s~~~~lrgh~a-pVl~l~~~p~~ 150 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLD--DSSQEKVLRGHDA-PVLQLSYDPKG 150 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEecc--ccchheeecccCC-ceeeeeEcCCC
No 282
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=32.50 E-value=1.9e+02 Score=29.50 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=32.5
Q ss_pred CCCCeEEEEeCCCCceEEcc--ccccccCceeEEEeCCeEEEEecCC----ceEEEEEec
Q 044903 303 ENSCTLSKYDEVMDDWKEVV--KSDLLKGARHAAAGGGRVCAVCENG----GGIVVVDVK 356 (387)
Q Consensus 303 ~~~~~v~~yd~~~~~W~~v~--~~~~~~~~~~~~~~~~~l~v~gg~~----~~i~v~d~~ 356 (387)
+.++++.+|++.+..=-.-. .+...+++..+-+++|+++|+.|-+ .++.+||..
T Consensus 739 cKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 739 CKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred ecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 35789999999765321111 1222344556668899998887742 345555544
No 283
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=32.32 E-value=3.2e+02 Score=25.81 Aligned_cols=61 Identities=3% Similarity=0.019 Sum_probs=37.9
Q ss_pred CeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEec-CCceEEEEEec
Q 044903 296 EVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVK 356 (387)
Q Consensus 296 g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg-~~~~i~v~d~~ 356 (387)
|+-|+-|+.+..|.+|......=.++--..++..-+++.-.-+.=||+.| ++.++-+|...
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 56677777888899998866654554433444444444434455566655 46777777665
No 284
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=32.09 E-value=3.8e+02 Score=24.16 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=34.1
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe--CCeEEEEecCCceEEEEEec
Q 044903 295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~ 356 (387)
.+.+|++....|.|.+..-- .-+.+....-+...+.|+.. +|+-+.+|+.+-.+..||++
T Consensus 158 ~nd~Fflt~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD 219 (313)
T ss_pred CCCEEEEecCCceEEEEecc--ccccccccccCCcceEEEEECCCCceEeeccccceeeccChh
Confidence 45677775434554443211 11222222222234444443 78999998888888899988
No 285
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=32.02 E-value=97 Score=18.17 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=12.3
Q ss_pred eEEEEeCCCCeEEEEeCCCC--ceEE
Q 044903 297 VLYGIDENSCTLSKYDEVMD--DWKE 320 (387)
Q Consensus 297 ~ly~~g~~~~~v~~yd~~~~--~W~~ 320 (387)
++|+- ..++.++.+|.++. .|+.
T Consensus 2 ~v~~~-~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEE-TTTSEEEEEETTTTSEEEEE
T ss_pred EEEEe-CCCCEEEEEECCCCCEEEee
Confidence 34444 44566666666554 3554
No 286
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=31.87 E-value=3.7e+02 Score=23.93 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=45.7
Q ss_pred CCeEEEEeCCCC-eEEEEeC----CCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903 295 EEVLYGIDENSC-TLSKYDE----VMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 295 ~g~ly~~g~~~~-~v~~yd~----~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
++++|++....+ .+..|.. ....|...-.+|..-...+-++++|.+|.-..++..|..||...
T Consensus 30 ~~r~~~~~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~t~~ivky~l~~ 97 (249)
T KOG3545|consen 30 DDRIYVMNYFDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAGTRNIIKYDLET 97 (249)
T ss_pred cCceEEeccccCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccCCcceEEEEeec
Confidence 567888865444 4677744 45567666666665555667899999999977788999999886
No 287
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.78 E-value=6.8e+02 Score=26.95 Aligned_cols=78 Identities=6% Similarity=0.020 Sum_probs=48.3
Q ss_pred EEEEeCCCCeEEEEeC-CCCceEEccccccccCceeEEEeCC--eEEEEecCCceEEEEEecCC--------CCCceeEE
Q 044903 298 LYGIDENSCTLSKYDE-VMDDWKEVVKSDLLKGARHAAAGGG--RVCAVCENGGGIVVVDVKAA--------AAPTIFVV 366 (387)
Q Consensus 298 ly~~g~~~~~v~~yd~-~~~~W~~v~~~~~~~~~~~~~~~~~--~l~v~gg~~~~i~v~d~~~~--------~~~~~W~~ 366 (387)
|++-|+++..|..|.. +++.|+. ...-.+..+..++.... .+.+-.+.+..|-|||+... +..+-|-+
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEv-DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEV-DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred eEEecCCcceeeEEEeccccceee-hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence 5555666666666654 4677865 33333344455555544 67777677889999999854 34566777
Q ss_pred cCCCCceeeE
Q 044903 367 DTPLGFEALS 376 (387)
Q Consensus 367 ~~~~~~~~~~ 376 (387)
...|.+++..
T Consensus 299 aahP~lNLfA 308 (1202)
T KOG0292|consen 299 AAHPELNLFA 308 (1202)
T ss_pred EecCCcceee
Confidence 6665555443
No 288
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=31.66 E-value=4.3e+02 Score=24.59 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=39.7
Q ss_pred EeCCeEEEEeC-CCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903 293 MDEEVLYGIDE-NSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 293 ~~~g~ly~~g~-~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
..++..|++.. .+.+|..||.+...-..|... ......+++.-+|+.++..|-..++.||++-
T Consensus 195 iA~~~k~imsas~dt~i~lw~lkGq~L~~idtn-q~~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN-QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecCCceeeeeccc-cccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 44566777764 455799999986655544432 1222456667778777777766666666554
No 289
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=31.50 E-value=4e+02 Score=24.16 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=47.3
Q ss_pred eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEee-----eCCeEEEEECCCCceeecccc--c--cCC
Q 044903 215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV-----KGAEGAVYDVVANTWDDMREG--M--VRG 285 (387)
Q Consensus 215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg-----~~~~i~~yD~~~~~W~~~~~~--~--~~~ 285 (387)
++..+|.++++..+.|..-.+.. -.-...+|.+.++.- +...+.+||.....=...... + +..
T Consensus 75 t~kLWDv~tGk~la~~k~~~~Vk--------~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPVK--------RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCeeE--------EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 77888999888444444322211 111223444443322 225678888874432111110 0 111
Q ss_pred CCCcEEEEeC--CeEEEEeCCCCeEEEEeCCCC
Q 044903 286 WRGPVAAMDE--EVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 286 ~~~~~~~~~~--g~ly~~g~~~~~v~~yd~~~~ 316 (387)
-.....++.+ ++..+.|.++|.|..||..+.
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence 1123333332 345556667899999999875
No 290
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=31.47 E-value=3.2e+02 Score=23.07 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=46.9
Q ss_pred CEEEEEeee-CCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeC---CCCeEEEEeCCCCceEEccccccc
Q 044903 253 GKLCLVNVK-GAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDE---NSCTLSKYDEVMDDWKEVVKSDLL 327 (387)
Q Consensus 253 g~lyv~gg~-~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~---~~~~v~~yd~~~~~W~~v~~~~~~ 327 (387)
.++.++-|. ...+..||.+.+.=..++. ... ..+. ..+|+..++++ ..|.|..||.. +.+.+......
T Consensus 72 ~~favi~g~~~~~v~lyd~~~~~i~~~~~----~~~-n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~ 144 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVKGKKIFSFGT----QPR-NTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKISTFEHS 144 (194)
T ss_pred CEEEEEEccCCcccEEEcCcccEeEeecC----CCc-eEEEECCCCCEEEEEEccCCCcEEEEEECC--CCEEeeccccC
Confidence 345555333 3678889986222222221 111 1222 23566666654 24779999998 44555443332
Q ss_pred cCceeEEEeCCeEEEEecC------CceEEEEEec
Q 044903 328 KGARHAAAGGGRVCAVCEN------GGGIVVVDVK 356 (387)
Q Consensus 328 ~~~~~~~~~~~~l~v~gg~------~~~i~v~d~~ 356 (387)
......-..+|+-++.... ++.+.+|+..
T Consensus 145 ~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 145 DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 2222222346666665432 3444555544
No 291
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=31.36 E-value=4e+02 Score=24.14 Aligned_cols=171 Identities=11% Similarity=0.031 Sum_probs=80.2
Q ss_pred CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccc----cCeEEcCCCCCC
Q 044903 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN----SRWEKTGELKDG 239 (387)
Q Consensus 164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~----~~W~~~~~~~~~ 239 (387)
+.+..+|..|.+-...-+.+.+...... ..++.+.++.--.. ......+.+||...+... ---.+++ .|+.
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~Vk~~~F-~~~gn~~l~~tD~~---mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~s 148 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPVKRVDF-SFGGNLILASTDKQ---MGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDS 148 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCeeEEEee-ccCCcEEEEEehhh---cCcceEEEEEEccCChhhhcccCceEEec-CCcc
Confidence 4557789988876554444433221111 22444444432211 234457788887743300 0011111 1111
Q ss_pred cccccceeEEEEC--CEEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 240 RFSREAIDAVGWK--GKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 240 ~~~~~~~~~v~~~--g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
....+..+ ++..+.|.....|-.||..++ +-..-...-...-..... ..+...|+.+..+.....+|..+-
T Consensus 149 -----kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~-s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 149 -----KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF-SRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred -----ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc-cCCcceEEecccCccceeeeccce
Confidence 13334433 445555655688999999875 332221111111000111 224556777666677788887654
Q ss_pred ceEEccccccccCceeEEEeCCeEEEEec
Q 044903 317 DWKEVVKSDLLKGARHAAAGGGRVCAVCE 345 (387)
Q Consensus 317 ~W~~v~~~~~~~~~~~~~~~~~~l~v~gg 345 (387)
+-.+--....+....++....+.+++-||
T Consensus 223 ~v~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 223 EVLKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred eeEEEeeecccccceecccccceEEecCC
Confidence 33332222333334455566666665543
No 292
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=30.58 E-value=3.9e+02 Score=23.84 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=78.3
Q ss_pred CCceeeCCCCCCC-----ce-eeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccce
Q 044903 173 CRTWTFGPELVTP-----RR-WCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAI 246 (387)
Q Consensus 173 t~~W~~l~~~~~~-----r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~ 246 (387)
..-|+..+||... -- ......-.|.|+.+||-+ .++..|.++++ -...-.-. ....|
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~---------~~y~~dlE~G~----i~r~~rGH----tDYvH 160 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG---------VIYQVDLEDGR----IQREYRGH----TDYVH 160 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe---------EEEEEEecCCE----EEEEEcCC----cceee
Confidence 3457777776541 11 222223467888888642 56788888887 33321000 00012
Q ss_pred eEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccc------cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce
Q 044903 247 DAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMRE------GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDW 318 (387)
Q Consensus 247 ~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~------~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W 318 (387)
+.+. -++.| +-|+.+..+-++|.++.+-..+-. .+...+..--.++..+.=+++.|....+-.|++...+=
T Consensus 161 ~vv~R~~~~qi-lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~ 239 (325)
T KOG0649|consen 161 SVVGRNANGQI-LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSES 239 (325)
T ss_pred eeeecccCcce-eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCc
Confidence 2222 12333 234444678888888876544421 11111222113333344455555455788888766655
Q ss_pred EEccccccccCceeEEEeCCeEEEEecCCceEEEE
Q 044903 319 KEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVV 353 (387)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~ 353 (387)
+.+.+.| . ....+...++.++++|.+..+.-|
T Consensus 240 t~vfpip--a-~v~~v~F~~d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 240 TCVFPIP--A-RVHLVDFVDDCVLIGGEGNHVQSY 271 (325)
T ss_pred eEEEecc--c-ceeEeeeecceEEEeccccceeee
Confidence 5444332 2 223444445555665655444333
No 293
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.28 E-value=5e+02 Score=24.97 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=58.4
Q ss_pred eeEEEECCEEEEEeeeCCeEEEEECCCCce-eeccccccCCCCCcEEE--EeCCeEEEEeCCCCeEEEEeCCCCceEEcc
Q 044903 246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSKYDEVMDDWKEVV 322 (387)
Q Consensus 246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~--~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~ 322 (387)
+..+++++..++-|.+...+-.+|..+..= ..++. +..-.++. ..+..|... ..+..+.+.|..+..=....
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEeec----CcceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEe
Confidence 445555555555555556677777544322 23321 11111222 222233333 34566777887776554444
Q ss_pred ccccccC----ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 323 KSDLLKG----ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 323 ~~~~~~~----~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
..+..+. ..+++..++..+..|+.++.+++|++.++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 3333322 24556667777778777889999998865
No 294
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=30.13 E-value=1.1e+02 Score=17.39 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=13.3
Q ss_pred CCeEEEEecCCceEEEEE
Q 044903 337 GGRVCAVCENGGGIVVVD 354 (387)
Q Consensus 337 ~~~l~v~gg~~~~i~v~d 354 (387)
++..++.|+.++.+.+||
T Consensus 22 ~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 22 DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp TSSEEEEEETTSEEEEEE
T ss_pred ccccceeeCCCCEEEEEC
Confidence 467777777778888776
No 295
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=29.77 E-value=4.6e+02 Score=24.39 Aligned_cols=71 Identities=6% Similarity=0.047 Sum_probs=43.5
Q ss_pred EECCEEEEEeee-CCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeC---CCCceEEcc
Q 044903 250 GWKGKLCLVNVK-GAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDE---VMDDWKEVV 322 (387)
Q Consensus 250 ~~~g~lyv~gg~-~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~---~~~~W~~v~ 322 (387)
..++..|++... +.+|..||..-+.-..+.. .+.....+++.-+|+.....+..-++.+|.+ +..+.+++.
T Consensus 195 iA~~~k~imsas~dt~i~lw~lkGq~L~~idt--nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~ 269 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLKGQLLQSIDT--NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK 269 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecCCceeeeecc--ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh
Confidence 346666777543 3788889988655565553 2222244566667777777666777888765 344555544
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.09 E-value=6.1e+02 Score=25.52 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=40.8
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe--CCeEEEEecCCceEEEEEecCC
Q 044903 295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
.....++|..+|.|..||..++.=+.+.. + . ....+.+ +|.++++|+..+.+..+|+.-.
T Consensus 270 ~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-~-~--~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 270 SEDKLVLGCEDGSIILYDTTRGVTLLAKA-E-F--IPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ccceEEEEecCCeEEEEEcCCCeeeeeee-c-c--cceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 45678899899999999997763222111 1 1 1123333 7889999888889999998843
No 297
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=29.01 E-value=3.2e+02 Score=24.06 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCEEEEEeeeCCeEEEEE---CCCCceeeccccccCC-CC--CcEEEEeCCeEEEEeCCCCeEEEE---eCCCCceEE
Q 044903 252 KGKLCLVNVKGAEGAVYD---VVANTWDDMREGMVRG-WR--GPVAAMDEEVLYGIDENSCTLSKY---DEVMDDWKE 320 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD---~~~~~W~~~~~~~~~~-~~--~~~~~~~~g~ly~~g~~~~~v~~y---d~~~~~W~~ 320 (387)
+++||.+.. ..++.+. ...++|...+..+..+ |. ....+-..|.||.+.. +++++++ +...+.|..
T Consensus 44 ~g~lY~I~~--~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~ 118 (229)
T PF14517_consen 44 NGRLYAIRN--DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIG 118 (229)
T ss_dssp TS-EEEEET--TEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEET-T-EEEEES---STT--HHH
T ss_pred CceEEEEEC--CceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEecc-ccceeeccCCCccCcchhh
Confidence 778888753 2555552 3355676444334444 43 2222234578999975 6777665 456678864
No 298
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=28.56 E-value=6.8e+02 Score=25.90 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=36.6
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903 293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 293 ~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
..++.+.+..|+++++..|+.+ .-......|-.....+.+..+|.|++- +.++.+.||-.+
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg-~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVG-GSDGRVRVFTVD 288 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEe-ccCceEEEEEec
Confidence 4456677777889999999876 111222333333344445557777654 556667777655
No 299
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=28.25 E-value=1.5e+02 Score=18.21 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=20.3
Q ss_pred eeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 331 RHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 331 ~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
..+...++.+||. .....+.++|+++.
T Consensus 5 ~~v~v~g~yaYva-~~~~Gl~IvDISnP 31 (42)
T PF08309_consen 5 RDVAVSGNYAYVA-DGNNGLVIVDISNP 31 (42)
T ss_pred EEEEEECCEEEEE-eCCCCEEEEECCCC
Confidence 4566778888888 44577889999954
No 300
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=27.98 E-value=2.1e+02 Score=26.12 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=39.3
Q ss_pred eEEEEeCCCCeEEEEeCC---CCceEEccccccccCceeEEE--eCCeEEEEecCCceEEEEEecCC--------CCCce
Q 044903 297 VLYGIDENSCTLSKYDEV---MDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA--------AAPTI 363 (387)
Q Consensus 297 ~ly~~g~~~~~v~~yd~~---~~~W~~v~~~~~~~~~~~~~~--~~~~l~v~gg~~~~i~v~d~~~~--------~~~~~ 363 (387)
.|...|++++.+..||.. +-.|+... .+..+-+++-. ......+.|..+..|.++|..+- ..|..
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~k--vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGV 256 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSK--VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGV 256 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecce--eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccce
Confidence 567778889999999986 44454211 11111111111 12334445445777888887621 34688
Q ss_pred eEE-cCC
Q 044903 364 FVV-DTP 369 (387)
Q Consensus 364 W~~-~~~ 369 (387)
|++ -.|
T Consensus 257 WRi~~~p 263 (339)
T KOG0280|consen 257 WRIKHHP 263 (339)
T ss_pred EEEEecc
Confidence 997 444
No 301
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=27.62 E-value=3.2e+02 Score=27.83 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=38.9
Q ss_pred EECCEEEEEeeeC-CeEEEEECCCCceeeccccccCC--CCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903 250 GWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRG--WRGPVAAMDEEVLYGIDENSCTLSKYDEVMD 316 (387)
Q Consensus 250 ~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~--~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~ 316 (387)
.+.|+..++...+ ..+..+|+++.+-.-....+... ....+....+..+|+.|+.++.+.+||..-+
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred cCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 3446655554433 56777887776655443111111 1112222446679999999999999997544
No 302
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=27.12 E-value=5.7e+02 Score=24.53 Aligned_cols=134 Identities=10% Similarity=0.074 Sum_probs=56.0
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEeee----CCeEEEEECCCCceeeccccccCCCCC
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVK----GAEGAVYDVVANTWDDMREGMVRGWRG 288 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg~----~~~i~~yD~~~~~W~~~~~~~~~~~~~ 288 (387)
..++.-|..... ...+-.-.. . ....|.--+-+|. |+..+.. ...+..||+++..=+.+.. ++ +..
T Consensus 216 ~RiW~i~~dg~~----~~~v~~~~~-~-e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p--~~~ 286 (386)
T PF14583_consen 216 QRIWTINTDGSN----VKKVHRRME-G-ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MP--WCS 286 (386)
T ss_dssp -SEEEEETTS-------EESS---T-T-EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-E---SEE
T ss_pred eEEEEEEcCCCc----ceeeecCCC-C-cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-CC--cee
Confidence 377888877665 555542211 1 1112333334554 3222221 2567889998763222222 22 233
Q ss_pred cEEEEeCCeEEEEeCCCC----------------eEEEEeCCCCceEEcc----------ccccccCceeEEEeCCeEEE
Q 044903 289 PVAAMDEEVLYGIDENSC----------------TLSKYDEVMDDWKEVV----------KSDLLKGARHAAAGGGRVCA 342 (387)
Q Consensus 289 ~~~~~~~g~ly~~g~~~~----------------~v~~yd~~~~~W~~v~----------~~~~~~~~~~~~~~~~~l~v 342 (387)
+-.+..+|+|++-+|.+. -|++++++++.-..+. .......++..+..+|+-+|
T Consensus 287 H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~Vl 366 (386)
T PF14583_consen 287 HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVL 366 (386)
T ss_dssp EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEE
T ss_pred eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEE
Confidence 455566778887765321 2455666655433322 11112235666777888888
Q ss_pred EecC---CceEEEEEec
Q 044903 343 VCEN---GGGIVVVDVK 356 (387)
Q Consensus 343 ~gg~---~~~i~v~d~~ 356 (387)
+..+ ...++..++.
T Consensus 367 F~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 367 FRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEE-TTSS-EEEEEE--
T ss_pred EECCCCCCccEEEEeCc
Confidence 7653 2455555554
No 303
>PRK01742 tolB translocation protein TolB; Provisional
Probab=27.03 E-value=5.8e+02 Score=24.62 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=59.5
Q ss_pred ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcE
Q 044903 214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
..+.++|..+++ -+.+...+... ......-||+ |++..... ..++.+|+.++..+.+..... ....+.
T Consensus 228 ~~i~i~dl~tg~----~~~l~~~~g~~----~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~ 298 (429)
T PRK01742 228 SQLVVHDLRSGA----RKVVASFRGHN----GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAG-NNTEPS 298 (429)
T ss_pred cEEEEEeCCCCc----eEEEecCCCcc----CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCC-CcCCEE
Confidence 367888988876 55554433211 0112223554 44332222 357778887777666543211 111222
Q ss_pred EEEeCCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 291 AAMDEEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 291 ~~~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
-.-.+..|++.....+ .|+.+|..+..=+.+.. . ... .....+|+.+++.+. ..++++|..++
T Consensus 299 wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~--~~~-~~~SpDG~~ia~~~~-~~i~~~Dl~~g 363 (429)
T PRK01742 299 WSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-R--GYS-AQISADGKTLVMING-DNVVKQDLTSG 363 (429)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-C--CCC-ccCCCCCCEEEEEcC-CCEEEEECCCC
Confidence 2222334555544344 45666665443232211 1 111 112334443333222 45666777643
No 304
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.00 E-value=4.6e+02 Score=23.45 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=29.8
Q ss_pred ECCCCceeecc-ccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC-ceEEccc
Q 044903 269 DVVANTWDDMR-EGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD-DWKEVVK 323 (387)
Q Consensus 269 D~~~~~W~~~~-~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~-~W~~v~~ 323 (387)
+-+.+.|+..- ..++...-..+=... |.+..+++.++++.+|-+..+ +|+++..
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~s-Gn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLS-GNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCccCcccccccccCCcceEEEEEecc-ccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 44567887543 112222111222233 445555555788888877655 8999864
No 305
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=26.95 E-value=1.2e+02 Score=16.52 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=13.6
Q ss_pred eCCeEEEEeCCCCeEEEE
Q 044903 294 DEEVLYGIDENSCTLSKY 311 (387)
Q Consensus 294 ~~g~ly~~g~~~~~v~~y 311 (387)
.+|.||+.+.....|.+|
T Consensus 11 ~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 11 SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp TTSEEEEEECCCTEEEEE
T ss_pred CCCCEEEEECCCCEEEEC
Confidence 678899998666677665
No 306
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.16 E-value=5.9e+02 Score=24.10 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=48.5
Q ss_pred CCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEeCCeEEEEe-CCCCeEEEEeCCCCceEEccccccccC
Q 044903 252 KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGID-ENSCTLSKYDEVMDDWKEVVKSDLLKG 329 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~g~ly~~g-~~~~~v~~yd~~~~~W~~v~~~~~~~~ 329 (387)
++.+...+..+..|-+.|..+..-- ++.. ...|-...+.-.+|+ |++. .+++.+.+||..+.+=... .+.+..
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg~cL~tL~g--hdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~--~~ah~h 377 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTGMCLFTLVG--HDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKT--LEAHEH 377 (406)
T ss_pred CccEEEeecccceEEEEeccCCeEEEEEec--ccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeec--cCCCcc
Confidence 4556666666678888888776332 1110 111111122233455 4444 4678899999988744332 222222
Q ss_pred c-eeEEEeCCeEEEEecC
Q 044903 330 A-RHAAAGGGRVCAVCEN 346 (387)
Q Consensus 330 ~-~~~~~~~~~l~v~gg~ 346 (387)
. ..+....+..||+.|.
T Consensus 378 fvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 378 FVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred eeEEEecCCCCceEEecc
Confidence 1 2344456778888775
No 307
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=25.01 E-value=5.7e+02 Score=23.87 Aligned_cols=138 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred EEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEEC-CCCceeeccccccCCCCCcEEE--
Q 044903 216 VEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV-VANTWDDMREGMVRGWRGPVAA-- 292 (387)
Q Consensus 216 v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~-~~~~W~~~~~~~~~~~~~~~~~-- 292 (387)
++++|.-|++.....+....+-+-..+ ++.+.-.+-=+++.|+...|.+||+ ..++-..+-.-...+-.+...+
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taA---hsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAA---HSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhh---eeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Q ss_pred -----EeCCeEEEEeCCCCeEEEE-eCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903 293 -----MDEEVLYGIDENSCTLSKY-DEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK 356 (387)
Q Consensus 293 -----~~~g~ly~~g~~~~~v~~y-d~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~ 356 (387)
-.+-+++.+|+....+-+| +-+..--..+..-..--....-...|+++|.=...+..|.+||+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
No 308
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=24.81 E-value=5.5e+02 Score=23.63 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=15.0
Q ss_pred CCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903 195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGE 225 (387)
Q Consensus 195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~ 225 (387)
.++..+-||.+. ++.+||.+.-+
T Consensus 55 egrymlSGgadg--------si~v~Dl~n~t 77 (397)
T KOG4283|consen 55 EGRYMLSGGADG--------SIAVFDLQNAT 77 (397)
T ss_pred cceEEeecCCCc--------cEEEEEecccc
Confidence 355566666544 67888887654
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=24.50 E-value=2e+02 Score=30.71 Aligned_cols=96 Identities=8% Similarity=-0.042 Sum_probs=61.3
Q ss_pred eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccc
Q 044903 246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD 325 (387)
Q Consensus 246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~ 325 (387)
+....+++.-.++||....+..||..+.+=..... ...+ +..+.-.+++..+.|...|+|..-|+.+. +.+....
T Consensus 140 ~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~--~v~imR~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~ 214 (1118)
T KOG1275|consen 140 ASSLHMGPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSAS--GVTIMRYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFD 214 (1118)
T ss_pred HHHhccCCcceeecchhhheeeeecccceeeeeee-ccCC--ceEEEEecCcEEEeecccceEEeecCCcC--ceeeeee
Confidence 33455577788899988889999987765444332 1111 23333456688888888899999999765 3333333
Q ss_pred cccCceeEEEeCCeEEEEecC
Q 044903 326 LLKGARHAAAGGGRVCAVCEN 346 (387)
Q Consensus 326 ~~~~~~~~~~~~~~l~v~gg~ 346 (387)
-+.+...-..+.|.+++..|.
T Consensus 215 aHs~siSDfDv~GNlLitCG~ 235 (1118)
T KOG1275|consen 215 AHSGSISDFDVQGNLLITCGY 235 (1118)
T ss_pred ccccceeeeeccCCeEEEeec
Confidence 444455555666777776664
No 310
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=24.38 E-value=5.6e+02 Score=23.58 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=14.8
Q ss_pred eEEEEeCCCCeEEEEeCCCCce
Q 044903 297 VLYGIDENSCTLSKYDEVMDDW 318 (387)
Q Consensus 297 ~ly~~g~~~~~v~~yd~~~~~W 318 (387)
.|+.. +.+..+..||.++.+=
T Consensus 104 ~i~S~-gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 104 HILSC-GTDKTVRGWDAETGKR 124 (338)
T ss_pred EEEEe-cCCceEEEEeccccee
Confidence 34444 4678899999988743
No 311
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.20 E-value=6.4e+02 Score=24.15 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=56.5
Q ss_pred CCEEEEEeeeCCeEEEEECCCC-ceeeccc-----cccCCCCCcEEEEeCCeEEEEeC--CCCeEEEEeCCCCceEEccc
Q 044903 252 KGKLCLVNVKGAEGAVYDVVAN-TWDDMRE-----GMVRGWRGPVAAMDEEVLYGIDE--NSCTLSKYDEVMDDWKEVVK 323 (387)
Q Consensus 252 ~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~-----~~~~~~~~~~~~~~~g~ly~~g~--~~~~v~~yd~~~~~W~~v~~ 323 (387)
||++.+--+.. ...+.|..+. .|....+ .+...+ -+....+..+++... ..+.+..+|.....|..+..
T Consensus 197 dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cR--F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 197 DGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCR--FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred CCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhce--ecccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 66554432332 6677777665 4444432 111111 111111235677653 34567778877666643321
Q ss_pred ----cccccC-ceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903 324 ----SDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 324 ----~~~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
+.+... ..-.|..+|+...+|..++.+.+|+..+
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEece
Confidence 122222 2334567899999998899999999884
No 312
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=23.61 E-value=3.1e+02 Score=27.49 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=39.3
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCcee--EE-EeCCeEEEEecCCceEEEEEecC
Q 044903 295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH--AA-AGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~--~~-~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
+|.+.+-|.++-.+.+||+-..+-...........-|+ .+ -.+++|++.|.++..|.++|.+.
T Consensus 61 dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 61 DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 56666666666789999996443222222222222222 22 23788888877888999999983
No 313
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=23.51 E-value=5.4e+02 Score=23.97 Aligned_cols=74 Identities=18% Similarity=0.091 Sum_probs=46.4
Q ss_pred CceEEEEeCCCCccccCeEEcC--CCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcE
Q 044903 213 AKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV 290 (387)
Q Consensus 213 ~~~v~vyd~~t~~~~~~W~~~~--~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~ 290 (387)
.+.-.+.|..+++ ..+. .|| ++--.++|+||+.......+..+|+++++.+.+... + +. ...
T Consensus 184 ~~gG~vidv~s~e-----vl~~GLsmP--------hSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~v-p-G~-~rG 247 (335)
T TIGR03032 184 RDGGCVIDIPSGE-----VVASGLSMP--------HSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFL-P-GF-TRG 247 (335)
T ss_pred cCCeEEEEeCCCC-----EEEcCccCC--------cCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEEC-C-CC-Ccc
Confidence 3344567888887 2222 344 333456999999987777899999999999988642 1 11 123
Q ss_pred EEEeCCeEEEEeC
Q 044903 291 AAMDEEVLYGIDE 303 (387)
Q Consensus 291 ~~~~~g~ly~~g~ 303 (387)
++.. |.+.+++.
T Consensus 248 L~f~-G~llvVgm 259 (335)
T TIGR03032 248 LAFA-GDFAFVGL 259 (335)
T ss_pred ccee-CCEEEEEe
Confidence 3444 55666653
No 314
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=23.39 E-value=3.5e+02 Score=20.80 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=42.0
Q ss_pred eEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEc
Q 044903 297 VLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD 367 (387)
Q Consensus 297 ~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~ 367 (387)
.-.++|.++..|.+|+-+.-.++.- .......++.+.+.-|..+-.++.|=+||-... .|++-
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~----e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----lWRiK 78 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEIT----ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----LWRIK 78 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEe----cccceEEEEEcCCCEEEEEecCCEEEEEeCcce----eeeec
Confidence 3455666788899998875444332 222234566666666777667888999988854 89973
No 315
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=23.33 E-value=7.6e+02 Score=24.68 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=41.2
Q ss_pred eCCeEEEEeCCCCeEEEEeCCCCceEEcccccc----c---cCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 294 DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL----L---KGARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 294 ~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~----~---~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
-+++++.-|..+|.|..||. ..|..-..+-. . .-.+..+..+|++++-=|.+..+-+||+.+-
T Consensus 327 rdg~~iAagc~DGSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 327 RDGKLIAAGCLDGSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred CCcchhhhcccCCceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 35677666677899999997 44544322211 1 1134556778888888667788889988843
No 316
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.85 E-value=5.8e+02 Score=23.19 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=95.2
Q ss_pred eCCEEEEEcCcc-CCCC----CCCCccEEEeCCCCceee---CCCC-CCCceeeeEEeeC--------CEEEEEecCCCC
Q 044903 145 LSGKLILLAATT-HNFN----PALTRPLIFDPICRTWTF---GPEL-VTPRRWCAAGYSR--------GAVYVASGIGSQ 207 (387)
Q Consensus 145 ~~~~l~v~GG~~-~~~~----~~~~~~~vydp~t~~W~~---l~~~-~~~r~~~~~~~~~--------~~iyv~GG~~~~ 207 (387)
-.+.||++-... .... .....+.+||..|++-.+ +|+- -.+.++....+++ +.+|+.--.
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~--- 86 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG--- 86 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT---
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC---
Confidence 467899985322 1111 223578999999998644 3322 2233444333332 356776332
Q ss_pred CCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEE-ee----eC------CeEEEEECCCC-ce
Q 044903 208 FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLV-NV----KG------AEGAVYDVVAN-TW 275 (387)
Q Consensus 208 ~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~-gg----~~------~~i~~yD~~~~-~W 275 (387)
...+.+||..+++ .|+.......+.. ......++|..+-. +| .. ....-|.+-+. .+
T Consensus 87 -----~~glIV~dl~~~~---s~Rv~~~~~~~~p---~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~l 155 (287)
T PF03022_consen 87 -----GPGLIVYDLATGK---SWRVLHNSFSPDP---DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKL 155 (287)
T ss_dssp -----TCEEEEEETTTTE---EEEEETCGCTTS----SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEE
T ss_pred -----cCcEEEEEccCCc---EEEEecCCcceec---cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcE
Confidence 2278999999987 4887765322211 13344456654422 11 10 12333444322 22
Q ss_pred eecc-----------cc-----c-cCC----CCCcEEEEeCCeEEEEeCCCCeEEEEeCCC----CceEEcccccc-ccC
Q 044903 276 DDMR-----------EG-----M-VRG----WRGPVAAMDEEVLYGIDENSCTLSKYDEVM----DDWKEVVKSDL-LKG 329 (387)
Q Consensus 276 ~~~~-----------~~-----~-~~~----~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~----~~W~~v~~~~~-~~~ 329 (387)
-.++ .. . ..+ .....+.-.+|.||+-.-..+.|.+||+.+ +....+...+. ..-
T Consensus 156 y~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~ 235 (287)
T PF03022_consen 156 YRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW 235 (287)
T ss_dssp EEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS
T ss_pred EEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec
Confidence 2221 00 0 001 111122234678998887888999999987 56677766666 444
Q ss_pred ceeEEEeC---CeEEEEec
Q 044903 330 ARHAAAGG---GRVCAVCE 345 (387)
Q Consensus 330 ~~~~~~~~---~~l~v~gg 345 (387)
.-.+...+ |.||++..
T Consensus 236 pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 236 PDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEEEE-T--TS-EEEEE-
T ss_pred cceeeeccccCceEEEEEC
Confidence 44555555 89999853
No 317
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=22.14 E-value=4e+02 Score=27.44 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=39.6
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccC----ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903 293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG----ARHAAAGGGRVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 293 ~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~----~~~~~~~~~~l~v~gg~~~~i~v~d~~~~ 358 (387)
+..+...+-++.++++.+|+...+.|.+......+.+ ..+.+..++-..++|+.+..+.++.....
T Consensus 22 ~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 22 VTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred ecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 3333333334567889999999999998544332222 12223345555666677777777777744
No 318
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.08 E-value=9.4e+02 Score=25.31 Aligned_cols=103 Identities=9% Similarity=-0.006 Sum_probs=51.5
Q ss_pred EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC-CceEEccccccccCcee
Q 044903 254 KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVM-DDWKEVVKSDLLKGARH 332 (387)
Q Consensus 254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~-~~W~~v~~~~~~~~~~~ 332 (387)
.+.+-|+.+..+-+||...+.=...--.-...-+-....-..+..|.-+.++|.+..||+.. ++|... .--+.+...
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k--~~AH~GpV~ 224 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK--LTAHNGPVL 224 (839)
T ss_pred cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH--hhcccCceE
Confidence 34555666688899998654321111000000010111111244555556778999999842 333321 112233332
Q ss_pred EE-EeCCeEEE-EecCCceEEEEEecCC
Q 044903 333 AA-AGGGRVCA-VCENGGGIVVVDVKAA 358 (387)
Q Consensus 333 ~~-~~~~~l~v-~gg~~~~i~v~d~~~~ 358 (387)
+. -.-++.|+ .||++..+-+||....
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCC
Confidence 33 23344444 5666888888888854
No 319
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=21.60 E-value=3.7e+02 Score=25.85 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=42.4
Q ss_pred EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeE-EEeCCeEEEEecCCceEEEEEecC
Q 044903 293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKA 357 (387)
Q Consensus 293 ~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~l~v~gg~~~~i~v~d~~~ 357 (387)
-.+|.|...||.+..-.+||+.+..=..+-.- ..+.-+.+ ..-+|..+..|+.++.+-|||...
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred cCCCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 45788888888887788899987743332211 22222322 345788888888888888888773
No 320
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=21.33 E-value=7.3e+02 Score=24.87 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCeEEEEEeCC--CCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCE--EEEEcCccCCCCCCCCccEEEeCCC
Q 044903 98 TPIHLFTFDPV--SSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGK--LILLAATTHNFNPALTRPLIFDPIC 173 (387)
Q Consensus 98 ~~~~~~~~d~~--~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~vydp~t 173 (387)
+...+|.++.. +..-......|. |++...... ..|+-|+.. ..+-+||+..
T Consensus 249 GEq~Lyll~t~g~s~~V~L~k~GPV-------------------hdv~W~~s~~EF~VvyGfMP------Akvtifnlr~ 303 (566)
T KOG2315|consen 249 GEQTLYLLATQGESVSVPLLKEGPV-------------------HDVTWSPSGREFAVVYGFMP------AKVTIFNLRG 303 (566)
T ss_pred ccceEEEEEecCceEEEecCCCCCc-------------------eEEEECCCCCEEEEEEeccc------ceEEEEcCCC
Q ss_pred CceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903 174 RTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN 223 (387)
Q Consensus 174 ~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t 223 (387)
+--..+++-|..+.++.. .++|.++.|.++ ...++|++|..+
T Consensus 304 ~~v~df~egpRN~~~fnp---~g~ii~lAGFGN-----L~G~mEvwDv~n 345 (566)
T KOG2315|consen 304 KPVFDFPEGPRNTAFFNP---HGNIILLAGFGN-----LPGDMEVWDVPN 345 (566)
T ss_pred CEeEeCCCCCccceEECC---CCCEEEEeecCC-----CCCceEEEeccc
No 321
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=21.33 E-value=4.7e+02 Score=25.44 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=42.3
Q ss_pred eEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC-CceEEEEEecCCCCCceeEEcCCCCce
Q 044903 307 TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN-GGGIVVVDVKAAAAPTIFVVDTPLGFE 373 (387)
Q Consensus 307 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~-~~~i~v~d~~~~~~~~~W~~~~~~~~~ 373 (387)
.++++|.+-+.--++..+.+-.+-+++-..++.+|++.-+ ..-.+++|.++.+.+..-...-.+||+
T Consensus 407 ~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS 474 (603)
T COG4880 407 AVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFS 474 (603)
T ss_pred eeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCch
Confidence 4666666655444444443444446566678888888655 477999999977666655555555654
No 322
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.61 E-value=9.8e+02 Score=24.98 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=58.6
Q ss_pred eeEEEECCEEEEEeeeCCeEEEEECCCC----ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEc
Q 044903 246 IDAVGWKGKLCLVNVKGAEGAVYDVVAN----TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEV 321 (387)
Q Consensus 246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~----~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v 321 (387)
.-++..+++..+..++..-+.+|+..++ .|..+-..+... ..+...+.+...||.++.+.+||.+...=+.
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~----ma~~~~g~LlAtggaD~~v~VWdi~~~~~th- 141 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVIT----MAFDPTGTLLATGGADGRVKVWDIKNGYCTH- 141 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEE----EEEcCCCceEEeccccceEEEEEeeCCEEEE-
Confidence 3344555554444455556788888766 455433221111 1222345677778889999999998764332
Q ss_pred cccccccCc-eeEEEeCC---eEEEEecCCceEEEEEecCC
Q 044903 322 VKSDLLKGA-RHAAAGGG---RVCAVCENGGGIVVVDVKAA 358 (387)
Q Consensus 322 ~~~~~~~~~-~~~~~~~~---~l~v~gg~~~~i~v~d~~~~ 358 (387)
....+.+. .++..... .+++.|+.+..+.+||...+
T Consensus 142 -~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 142 -SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred -EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 11111111 12222222 34466666788999998854
No 323
>PRK10115 protease 2; Provisional
Probab=20.02 E-value=1e+03 Score=24.89 Aligned_cols=147 Identities=7% Similarity=-0.107 Sum_probs=72.5
Q ss_pred CccEEEeC--CCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC-CCccccCeEEcCCCCCCc
Q 044903 164 TRPLIFDP--ICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDGR 240 (387)
Q Consensus 164 ~~~~vydp--~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~-t~~~~~~W~~~~~~~~~~ 240 (387)
+.++.|+. .+..|..+-+.+.... ......++.+|+.--.+. ....+...+.. +++ |+.+-+.....
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~~~-----~~~~l~~~~~~~~~~----~~~l~~~~~~~ 316 (686)
T PRK10115 247 SEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNRHG-----KNFGLYRTRVRDEQQ----WEELIPPRENI 316 (686)
T ss_pred ccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEcCCC-----CCceEEEecCCCccc----CeEEECCCCCC
Confidence 45666662 2334333222222222 223344678887754422 11234555655 456 98887542221
Q ss_pred ccccceeEEEECCEEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEE--EeCCeEEEEeC---CCCeEEEEeC
Q 044903 241 FSREAIDAVGWKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDE---NSCTLSKYDE 313 (387)
Q Consensus 241 ~~~~~~~~v~~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~g~ly~~g~---~~~~v~~yd~ 313 (387)
........++.|++..-.. ..+.++|..++....+.-..+......... ..++.+++.-. ....++.||+
T Consensus 317 ---~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 393 (686)
T PRK10115 317 ---MLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDM 393 (686)
T ss_pred ---EEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEEC
Confidence 1123344577777664433 567888876655555431011110000000 11234444332 3467999999
Q ss_pred CCCceEEccc
Q 044903 314 VMDDWKEVVK 323 (387)
Q Consensus 314 ~~~~W~~v~~ 323 (387)
++.+|+.+..
T Consensus 394 ~~~~~~~l~~ 403 (686)
T PRK10115 394 DTGERRVLKQ 403 (686)
T ss_pred CCCcEEEEEe
Confidence 9998888764
Done!