BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044904
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|B Chain B, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|C Chain C, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|D Chain D, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|E Chain E, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|F Chain F, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|G Chain G, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
Length = 94
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 65 PTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDT 123
P +RV+V++I KT GI+LP+ + K GKVIAVG G + G +P+ KEGD
Sbjct: 4 PLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDI 63
Query: 124 VLLPNYGGDHVKLGEKDYHLYRDEEILGTLH 154
V+ YGG +++ ++Y + + ++L L
Sbjct: 64 VVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 94
>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|P Chain P, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|Q Chain Q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|R Chain R, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|S Chain S, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|T Chain T, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|U Chain U, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|OO Chain o, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|PP Chain p, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|QQ Chain q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|RR Chain r, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|SS Chain s, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|TT Chain t, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|UU Chain u, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 100
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 65 PTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDT 123
P +RV+V++I KT GI+LP+ + K GKVIAVG G + G +P+ KEGD
Sbjct: 10 PLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDI 69
Query: 124 VLLPNYGGDHVKLGEKDYHLYRDEEILGTLH 154
V+ YGG +++ ++Y + + ++L L
Sbjct: 70 VVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 100
>pdb|1HX5|A Chain A, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|B Chain B, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|C Chain C, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|D Chain D, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|E Chain E, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|F Chain F, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|G Chain G, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1P3H|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|E Chain E, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|F Chain F, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|G Chain G, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|H Chain H, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|I Chain I, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|J Chain J, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|K Chain K, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|L Chain L, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|M Chain M, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|N Chain N, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
Length = 99
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 65 PTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNT-IPVAFKEGD 122
P +++LV+ + T +G+++P+ + K G V+AVGPG D++G IP+ EGD
Sbjct: 7 PLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGD 66
Query: 123 TVLLPNYGGDHVKLGEKDYHLYRDEEILGTLH 154
TV+ YGG +K ++Y + ++L +
Sbjct: 67 TVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98
>pdb|1LEP|A Chain A, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|B Chain B, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|C Chain C, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|D Chain D, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|E Chain E, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|F Chain F, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|G Chain G, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
Length = 99
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 62 RLIPTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEG-NTIPVAFK 119
++ P +++LV+ + T +G+++PE + K G V+AVGPG D++G IPV
Sbjct: 4 KIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVS 63
Query: 120 EGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLH 154
EGD V+ YGG +K ++Y + ++L +
Sbjct: 64 EGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98
>pdb|3NX6|A Chain A, Crystal Structure Of Co-Chaperonin, Groes (Xoo4289) From
Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 95
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 65 PTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDT 123
P +RV+V+ I + GI++P+ + K G+V+A+G G G+ K GD
Sbjct: 5 PLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKVGDK 64
Query: 124 VLLPNYGGDHVKLGEKDYHLYRDEEILGTL 153
V+ Y G K +Y + R+++IL +
Sbjct: 65 VIYGQYAGSSYKSEGVEYKVLREDDILAVI 94
>pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|P Chain P, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|Q Chain Q, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|R Chain R, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|S Chain S, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|T Chain T, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|U Chain U, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|O Chain O, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|P Chain P, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|Q Chain Q, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|R Chain R, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|S Chain S, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|T Chain T, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|U Chain U, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1PCQ|O Chain O, Crystal Structure Of Groel-Groes
pdb|1PCQ|P Chain P, Crystal Structure Of Groel-Groes
pdb|1PCQ|Q Chain Q, Crystal Structure Of Groel-Groes
pdb|1PCQ|R Chain R, Crystal Structure Of Groel-Groes
pdb|1PCQ|S Chain S, Crystal Structure Of Groel-Groes
pdb|1PCQ|T Chain T, Crystal Structure Of Groel-Groes
pdb|1PCQ|U Chain U, Crystal Structure Of Groel-Groes
pdb|1PF9|O Chain O, Groel-Groes-Adp
pdb|1PF9|P Chain P, Groel-Groes-Adp
pdb|1PF9|Q Chain Q, Groel-Groes-Adp
pdb|1PF9|R Chain R, Groel-Groes-Adp
pdb|1PF9|S Chain S, Groel-Groes-Adp
pdb|1PF9|T Chain T, Groel-Groes-Adp
pdb|1PF9|U Chain U, Groel-Groes-Adp
pdb|1SVT|O Chain O, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|P Chain P, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|Q Chain Q, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|R Chain R, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|S Chain S, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|T Chain T, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|U Chain U, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|O Chain O, Groel-Groes-Adp7
pdb|1SX4|P Chain P, Groel-Groes-Adp7
pdb|1SX4|Q Chain Q, Groel-Groes-Adp7
pdb|1SX4|R Chain R, Groel-Groes-Adp7
pdb|1SX4|S Chain S, Groel-Groes-Adp7
pdb|1SX4|T Chain T, Groel-Groes-Adp7
pdb|1SX4|U Chain U, Groel-Groes-Adp7
pdb|2C7C|O Chain O, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|P Chain P, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|Q Chain Q, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|R Chain R, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|S Chain S, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|T Chain T, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|U Chain U, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|O Chain O, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|P Chain P, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|Q Chain Q, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|R Chain R, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|S Chain S, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|T Chain T, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|U Chain U, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
Length = 97
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 65 PTLNRVLVEKIVPPSKTNAGILLP-EKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDT 123
P +RV+V++ +K+ GI+L ++K G+V+AVG G + G P+ K GD
Sbjct: 5 PLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDI 64
Query: 124 VLLPN-YGGDHVKLGEKDYHLYRDEEILGTLH 154
V+ + YG K+ ++ + + +IL +
Sbjct: 65 VIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96
>pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|B Chain B, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|C Chain C, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|D Chain D, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
Length = 572
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 56 SKAMAKRLIPTLNRVLVEKI---VPPSKTNAGILLPEKSSKLNSGKVIAVGPGARDKEGN 112
S K L P L + K+ + P AG LLPE + K+ IAV G D
Sbjct: 219 SNEFFKALDPRLEHLTTTKLRGDIVPLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAA 278
Query: 113 TIPVAFKE-GDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 155
V G V+ H+ LGEK+ + E + G + D
Sbjct: 279 VPAVGVTTPGKLVMAMGTSICHMLLGEKEQEV---EGMCGVVED 319
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 102 VGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKD 140
VG G D E + A KEG V + GG H+ + D
Sbjct: 196 VGEGCFDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALD 234
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 92 SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKL 136
+K+ + KV PG EG + F E + +L+ NYG H+++
Sbjct: 207 AKIENKKVWGHIPGTH--EGGADGMDFDEDNNLLVANYGSSHIEV 249
>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate
Reductase, The Terminal Enzyme Of The Non-mevalonate
Pathway
pdb|3DNF|B Chain B, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate
Reductase, The Terminal Enzyme Of The Non-mevalonate
Pathway
Length = 297
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 84 GILLPEKSSKLNSGKVIAVGPGARD-KEGNTIP---------VAFKEGDTVLLPNYG 130
+ L E+S K + GKV +GP + +E N + FKEGDTV++ ++G
Sbjct: 19 AVKLAEESLKESQGKVYTLGPIIHNPQEVNRLKNLGVFPSQGEEFKEGDTVIIRSHG 75
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 92 SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKL 136
+K+ + KV PG EG ++F E + +L+ N+G H+++
Sbjct: 207 AKIENKKVWGHIPGTH--EGGADGMSFDEDNNLLVANWGSSHIEV 249
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 41 LQWQHCPKGPNFCRESKAMAKRLIPTLNRVLV---EKIVPPSKTNAG--ILLPEKSSKLN 95
Q P F RESKA+ L P+ R++V E P K +A LL + ++K N
Sbjct: 131 FQTDRIIFSPEFLRESKALYDNLYPS--RIIVSCEENDSPKVKADAEKFALLLKSAAKKN 188
Query: 96 SGKVIAVGPG 105
+ V+ +G
Sbjct: 189 NVPVLIMGAS 198
>pdb|2ZP2|A Chain A, C-Terminal Domain Of Kipi From Bacillus Subtilis
pdb|2ZP2|B Chain B, C-Terminal Domain Of Kipi From Bacillus Subtilis
Length = 141
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 115 PVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDE 147
P + GD V V++ EKDYH Y++E
Sbjct: 114 PTLLRAGDIV-------KFVRISEKDYHAYKEE 139
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 41 LQWQHCPKGPNFCRESKAMAKRLIPTLNRVLV---EKIVPPSKTNAG--ILLPEKSSKLN 95
Q P F RESKA+ L P+ R++V E P K +A LL + ++K N
Sbjct: 131 FQTDRIIFSPEFLRESKALYDNLYPS--RIIVSCEENDSPKVKADAEKFALLLKSAAKKN 188
Query: 96 SGKVIAVGPG 105
+ V+ +G
Sbjct: 189 NVPVLIMGAS 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,096,366
Number of Sequences: 62578
Number of extensions: 210754
Number of successful extensions: 522
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 19
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)