Query 044904
Match_columns 155
No_of_seqs 135 out of 1089
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0234 GroS Co-chaperonin Gro 100.0 1.3E-37 2.8E-42 229.2 10.3 95 61-155 1-96 (96)
2 PRK00364 groES co-chaperonin G 100.0 1.3E-35 2.7E-40 217.2 11.4 93 62-154 2-95 (95)
3 cd00320 cpn10 Chaperonin 10 Kd 100.0 1.9E-34 4.1E-39 210.2 10.5 92 62-153 1-93 (93)
4 PRK14533 groES co-chaperonin G 100.0 6.6E-34 1.4E-38 207.6 10.7 89 62-155 2-91 (91)
5 PTZ00414 10 kDa heat shock pro 100.0 6.6E-34 1.4E-38 211.1 10.7 89 61-154 10-99 (100)
6 PF00166 Cpn10: Chaperonin 10 100.0 1.1E-32 2.4E-37 200.0 10.9 92 62-153 1-93 (93)
7 KOG1641 Mitochondrial chaperon 100.0 2.7E-30 5.9E-35 192.2 7.3 95 59-153 7-103 (104)
8 KOG1197 Predicted quinone oxid 90.9 0.21 4.5E-06 44.0 3.0 39 81-128 54-96 (336)
9 PF08240 ADH_N: Alcohol dehydr 90.3 0.3 6.4E-06 34.9 2.9 26 94-128 38-63 (109)
10 COG1062 AdhC Zn-dependent alco 86.5 0.53 1.1E-05 42.4 2.5 53 64-126 24-85 (366)
11 COG0604 Qor NADPH:quinone redu 82.7 1.7 3.8E-05 37.5 4.0 72 65-150 25-109 (326)
12 KOG0025 Zn2+-binding dehydroge 80.2 4 8.6E-05 36.6 5.3 59 64-132 45-114 (354)
13 TIGR03366 HpnZ_proposed putati 80.0 2.1 4.6E-05 35.0 3.5 30 95-128 6-36 (280)
14 TIGR02819 fdhA_non_GSH formald 75.3 2.6 5.6E-05 37.0 2.8 24 95-127 69-92 (393)
15 COG1064 AdhP Zn-dependent alco 74.4 6 0.00013 35.3 4.9 54 64-126 25-87 (339)
16 KOG0022 Alcohol dehydrogenase, 72.8 3 6.5E-05 37.7 2.6 53 63-125 28-90 (375)
17 TIGR02227 sigpep_I_bact signal 72.5 18 0.0004 28.0 6.7 46 57-103 28-78 (163)
18 PLN02178 cinnamyl-alcohol dehy 72.4 4.9 0.00011 34.9 3.8 24 94-126 67-90 (375)
19 TIGR02822 adh_fam_2 zinc-bindi 72.3 7.2 0.00016 32.9 4.7 25 94-127 63-87 (329)
20 cd08230 glucose_DH Glucose deh 71.7 3.4 7.4E-05 34.8 2.6 23 95-127 65-87 (355)
21 PLN02586 probable cinnamyl alc 68.5 4.8 0.0001 34.4 2.9 24 94-126 73-96 (360)
22 COG4384 Mu-like prophage prote 68.2 15 0.00032 30.8 5.5 41 109-149 87-134 (203)
23 PF08140 Cuticle_1: Crustacean 67.7 5.9 0.00013 25.3 2.4 31 82-112 2-36 (40)
24 cd08269 Zn_ADH9 Alcohol dehydr 66.2 13 0.00028 29.9 4.8 27 94-129 58-84 (312)
25 cd08237 ribitol-5-phosphate_DH 65.9 13 0.00028 31.4 4.9 23 95-128 66-88 (341)
26 TIGR01202 bchC 2-desacetyl-2-h 65.3 6.2 0.00013 32.9 2.9 46 95-150 66-115 (308)
27 cd08281 liver_ADH_like1 Zinc-d 65.1 6.1 0.00013 33.7 2.8 23 95-126 69-91 (371)
28 PRK10309 galactitol-1-phosphat 64.9 5.9 0.00013 33.1 2.7 25 94-127 60-84 (347)
29 cd08301 alcohol_DH_plants Plan 64.1 6.3 0.00014 33.4 2.7 24 95-127 64-87 (369)
30 PF10794 DUF2606: Protein of u 62.3 53 0.0011 25.8 7.3 65 69-135 43-112 (131)
31 cd05279 Zn_ADH1 Liver alcohol 61.3 21 0.00046 30.3 5.5 24 95-127 61-84 (365)
32 cd08239 THR_DH_like L-threonin 60.9 8.2 0.00018 32.0 2.8 25 95-128 62-86 (339)
33 PLN02827 Alcohol dehydrogenase 60.9 7.5 0.00016 33.6 2.6 24 95-127 71-94 (378)
34 cd08293 PTGR2 Prostaglandin re 60.8 8 0.00017 32.0 2.7 25 94-127 75-99 (345)
35 TIGR02818 adh_III_F_hyde S-(hy 59.8 8.8 0.00019 32.8 2.9 24 95-127 63-86 (368)
36 cd08292 ETR_like_2 2-enoyl thi 59.5 18 0.0004 29.3 4.6 26 94-128 65-90 (324)
37 PLN02740 Alcohol dehydrogenase 58.9 8.6 0.00019 33.0 2.7 24 95-127 73-96 (381)
38 cd08300 alcohol_DH_class_III c 58.8 8.7 0.00019 32.7 2.7 25 94-127 63-87 (368)
39 cd08238 sorbose_phosphate_red 58.2 9.1 0.0002 33.4 2.7 25 95-127 70-94 (410)
40 TIGR03451 mycoS_dep_FDH mycoth 58.1 9.7 0.00021 32.2 2.8 23 95-126 62-84 (358)
41 PLN02514 cinnamyl-alcohol dehy 57.6 10 0.00022 32.3 2.9 54 64-126 31-93 (357)
42 smart00696 DM9 Repeats found i 57.2 25 0.00054 24.3 4.3 50 87-138 12-64 (71)
43 KOG0024 Sorbitol dehydrogenase 56.6 4.8 0.0001 36.3 0.8 26 94-128 68-93 (354)
44 cd08266 Zn_ADH_like1 Alcohol d 56.0 16 0.00034 29.4 3.6 25 94-127 64-88 (342)
45 PRK10083 putative oxidoreducta 55.4 11 0.00024 31.0 2.7 25 94-127 60-84 (339)
46 cd08277 liver_alcohol_DH_like 55.0 11 0.00025 31.9 2.8 25 94-127 62-86 (365)
47 TIGR00692 tdh L-threonine 3-de 54.3 13 0.00028 31.0 2.9 25 94-127 62-86 (340)
48 cd08264 Zn_ADH_like2 Alcohol d 54.2 12 0.00026 30.6 2.7 25 94-127 61-85 (325)
49 TIGR02817 adh_fam_1 zinc-bindi 54.2 13 0.00027 30.5 2.8 25 94-127 65-89 (336)
50 cd08233 butanediol_DH_like (2R 53.8 12 0.00027 31.2 2.7 24 94-126 71-94 (351)
51 cd08287 FDH_like_ADH3 formalde 52.8 13 0.00027 30.8 2.6 24 94-126 60-83 (345)
52 cd05278 FDH_like Formaldehyde 52.0 15 0.00033 30.2 2.9 24 94-126 61-84 (347)
53 PF10844 DUF2577: Protein of u 51.9 13 0.00029 27.0 2.4 23 117-145 76-98 (100)
54 PF01079 Hint: Hint module; I 51.0 25 0.00055 29.2 4.2 24 108-131 21-45 (217)
55 cd08278 benzyl_alcohol_DH Benz 50.8 14 0.00031 31.4 2.7 24 94-126 62-85 (365)
56 cd08260 Zn_ADH6 Alcohol dehydr 50.0 15 0.00033 30.4 2.7 24 94-126 61-84 (345)
57 cd08261 Zn_ADH7 Alcohol dehydr 49.9 16 0.00034 30.2 2.8 24 94-126 60-83 (337)
58 cd05188 MDR Medium chain reduc 49.8 17 0.00038 28.1 2.8 26 94-128 36-61 (271)
59 cd08291 ETR_like_1 2-enoyl thi 49.7 16 0.00034 30.2 2.7 26 94-127 67-92 (324)
60 cd05284 arabinose_DH_like D-ar 49.5 16 0.00034 30.1 2.7 24 95-127 65-88 (340)
61 cd08235 iditol_2_DH_like L-idi 49.4 17 0.00036 30.0 2.9 24 94-126 60-83 (343)
62 cd08284 FDH_like_2 Glutathione 49.1 16 0.00034 30.1 2.7 24 94-126 60-83 (344)
63 cd08262 Zn_ADH8 Alcohol dehydr 48.7 16 0.00035 30.1 2.7 25 94-127 70-95 (341)
64 cd08285 NADP_ADH NADP(H)-depen 48.4 18 0.00038 30.3 2.8 25 94-127 60-84 (351)
65 cd08255 2-desacetyl-2-hydroxye 48.1 34 0.00073 27.2 4.3 26 93-127 26-51 (277)
66 cd08286 FDH_like_ADH2 formalde 47.9 17 0.00038 30.0 2.7 25 94-127 61-85 (345)
67 TIGR03214 ura-cupin putative a 47.4 29 0.00064 29.2 4.0 50 95-146 201-253 (260)
68 cd08236 sugar_DH NAD(P)-depend 47.1 20 0.00043 29.6 2.9 26 93-127 58-83 (343)
69 cd08232 idonate-5-DH L-idonate 46.5 18 0.0004 29.8 2.7 23 95-126 61-83 (339)
70 cd08283 FDH_like_1 Glutathione 46.5 18 0.00038 31.2 2.6 25 94-127 61-85 (386)
71 cd05283 CAD1 Cinnamyl alcohol 46.1 19 0.0004 30.0 2.7 24 94-126 60-83 (337)
72 cd08258 Zn_ADH4 Alcohol dehydr 45.9 20 0.00044 29.6 2.8 25 94-127 62-86 (306)
73 PLN02702 L-idonate 5-dehydroge 45.5 19 0.00042 30.3 2.7 24 94-126 80-103 (364)
74 cd08231 MDR_TM0436_like Hypoth 44.5 22 0.00047 29.8 2.8 30 94-127 61-91 (361)
75 PTZ00354 alcohol dehydrogenase 44.3 23 0.0005 28.7 2.9 24 94-126 65-88 (334)
76 cd08290 ETR 2-enoyl thioester 43.8 23 0.0005 29.1 2.8 26 94-128 70-95 (341)
77 cd08282 PFDH_like Pseudomonas 43.7 22 0.00048 30.3 2.8 24 94-126 60-83 (375)
78 PF06890 Phage_Mu_Gp45: Bacter 43.7 93 0.002 25.0 6.2 31 94-130 57-87 (162)
79 cd08279 Zn_ADH_class_III Class 43.6 22 0.00047 30.1 2.7 24 94-126 60-83 (363)
80 PRK05396 tdh L-threonine 3-deh 43.3 24 0.00053 29.2 2.9 24 95-127 65-88 (341)
81 cd08274 MDR9 Medium chain dehy 43.0 23 0.00049 29.2 2.7 24 95-127 85-108 (350)
82 PRK10754 quinone oxidoreductas 42.8 24 0.00053 28.8 2.8 25 94-127 64-88 (327)
83 cd08259 Zn_ADH5 Alcohol dehydr 42.6 24 0.00052 28.5 2.7 25 94-127 61-85 (332)
84 smart00829 PKS_ER Enoylreducta 42.3 23 0.00051 27.3 2.5 26 94-128 30-55 (288)
85 cd08268 MDR2 Medium chain dehy 41.6 25 0.00054 27.9 2.7 25 94-127 64-88 (328)
86 cd05285 sorbitol_DH Sorbitol d 41.2 26 0.00057 29.1 2.8 24 94-126 61-84 (343)
87 COG1063 Tdh Threonine dehydrog 40.6 26 0.00057 30.3 2.8 24 95-128 63-86 (350)
88 cd08240 6_hydroxyhexanoate_dh_ 40.2 26 0.00056 29.2 2.6 25 94-127 73-97 (350)
89 cd05195 enoyl_red enoyl reduct 39.9 27 0.00058 26.9 2.5 25 94-127 34-58 (293)
90 TIGR01751 crot-CoA-red crotony 39.6 27 0.00058 30.1 2.7 24 95-127 85-108 (398)
91 PRK09422 ethanol-active dehydr 39.6 28 0.00061 28.6 2.7 24 94-126 60-83 (338)
92 cd08234 threonine_DH_like L-th 39.3 31 0.00066 28.2 2.9 24 94-126 59-82 (334)
93 cd08297 CAD3 Cinnamyl alcohol 39.2 65 0.0014 26.5 4.8 23 95-126 64-86 (341)
94 cd08254 hydroxyacyl_CoA_DH 6-h 39.2 29 0.00063 28.2 2.7 23 95-126 64-86 (338)
95 TIGR01511 ATPase-IB1_Cu copper 39.1 51 0.0011 30.7 4.6 49 82-135 112-164 (562)
96 cd08246 crotonyl_coA_red croto 39.0 30 0.00066 29.5 3.0 24 95-127 89-112 (393)
97 cd08270 MDR4 Medium chain dehy 39.0 32 0.0007 27.5 2.9 25 94-127 58-82 (305)
98 cd08299 alcohol_DH_class_I_II_ 38.5 29 0.00063 29.8 2.7 25 94-127 67-91 (373)
99 cd08244 MDR_enoyl_red Possible 38.2 32 0.0007 27.7 2.9 26 94-128 66-91 (324)
100 KOG0023 Alcohol dehydrogenase, 37.8 27 0.00058 31.7 2.4 24 95-127 73-96 (360)
101 cd08251 polyketide_synthase po 37.7 32 0.0007 27.0 2.7 25 94-127 44-68 (303)
102 cd08265 Zn_ADH3 Alcohol dehydr 36.7 32 0.00068 29.5 2.7 23 95-126 95-117 (384)
103 cd08245 CAD Cinnamyl alcohol d 36.6 34 0.00073 28.0 2.7 24 94-126 60-83 (330)
104 COG2140 Thermophilic glucose-6 36.4 53 0.0012 27.7 3.9 36 109-144 121-157 (209)
105 cd05282 ETR_like 2-enoyl thioe 36.2 37 0.0008 27.4 2.9 26 94-128 63-88 (323)
106 cd08273 MDR8 Medium chain dehy 36.0 34 0.00074 27.7 2.7 40 95-149 65-105 (331)
107 cd08250 Mgc45594_like Mgc45594 36.0 74 0.0016 25.9 4.7 26 94-128 67-92 (329)
108 cd08298 CAD2 Cinnamyl alcohol 35.9 37 0.0008 27.8 2.9 24 94-126 65-88 (329)
109 cd06530 S26_SPase_I The S26 Ty 35.8 57 0.0012 21.9 3.4 43 58-101 9-56 (85)
110 cd08248 RTN4I1 Human Reticulon 35.6 32 0.00069 28.3 2.5 25 94-127 80-104 (350)
111 cd08296 CAD_like Cinnamyl alco 35.3 37 0.0008 28.2 2.8 24 94-126 61-84 (333)
112 cd08253 zeta_crystallin Zeta-c 34.8 36 0.00079 26.9 2.6 25 95-128 65-89 (325)
113 PLN03154 putative allyl alcoho 34.8 34 0.00073 29.1 2.5 24 94-126 81-104 (348)
114 cd03703 aeIF5B_II aeIF5B_II: T 34.6 84 0.0018 23.8 4.4 19 117-135 26-47 (110)
115 PF02559 CarD_CdnL_TRCF: CarD- 34.5 30 0.00065 24.4 1.9 29 118-146 2-38 (98)
116 cd08249 enoyl_reductase_like e 34.1 38 0.00082 28.3 2.7 25 94-127 61-85 (339)
117 cd08271 MDR5 Medium chain dehy 33.9 39 0.00085 27.0 2.7 25 94-127 63-87 (325)
118 cd08267 MDR1 Medium chain dehy 33.8 41 0.00089 26.8 2.8 25 94-127 65-89 (319)
119 PRK05889 putative acetyl-CoA c 33.8 87 0.0019 20.8 4.0 29 125-153 42-70 (71)
120 cd05286 QOR2 Quinone oxidoredu 33.7 43 0.00093 26.3 2.8 25 94-127 61-85 (320)
121 cd08263 Zn_ADH10 Alcohol dehyd 33.6 38 0.00082 28.6 2.6 27 94-126 60-86 (367)
122 PF08605 Rad9_Rad53_bind: Fung 33.5 67 0.0015 25.0 3.8 20 109-128 51-70 (131)
123 cd08272 MDR6 Medium chain dehy 33.3 41 0.00089 26.8 2.7 25 94-127 64-88 (326)
124 TIGR03201 dearomat_had 6-hydro 33.1 44 0.00096 28.1 3.0 23 95-127 61-83 (349)
125 PRK13771 putative alcohol dehy 32.8 44 0.00095 27.4 2.8 25 94-127 61-85 (334)
126 PRK12784 hypothetical protein; 32.7 94 0.002 22.7 4.2 25 96-125 42-66 (84)
127 cd06555 ASCH_PF0470_like ASC-1 30.8 39 0.00084 25.5 2.0 15 117-131 31-45 (109)
128 cd08252 AL_MDR Arginate lyase 29.9 48 0.001 27.0 2.6 25 94-127 66-90 (336)
129 PF09871 DUF2098: Uncharacteri 29.6 1.1E+02 0.0024 22.4 4.2 34 117-150 2-40 (91)
130 PRK09880 L-idonate 5-dehydroge 29.5 48 0.001 27.8 2.6 23 94-127 66-88 (343)
131 cd05276 p53_inducible_oxidored 29.4 50 0.0011 26.0 2.5 25 94-127 64-88 (323)
132 COG4079 Uncharacterized protei 29.4 64 0.0014 28.3 3.3 28 117-145 261-292 (293)
133 TIGR00074 hypC_hupF hydrogenas 29.1 71 0.0015 22.6 3.0 12 117-128 35-46 (76)
134 COG3450 Predicted enzyme of th 29.0 1.1E+02 0.0023 23.5 4.2 27 109-137 79-106 (116)
135 KOG3209 WW domain-containing p 28.8 37 0.00081 33.9 2.0 63 70-151 757-821 (984)
136 cd05281 TDH Threonine dehydrog 28.1 59 0.0013 27.0 2.9 24 94-126 64-87 (341)
137 TIGR03784 marine_sortase sorta 27.9 69 0.0015 25.7 3.1 49 96-148 90-139 (174)
138 TIGR02824 quinone_pig3 putativ 27.7 58 0.0013 25.8 2.6 25 94-127 64-88 (325)
139 cd07376 PLPDE_III_DSD_D-TA_lik 27.6 90 0.0019 26.6 4.0 36 117-153 305-341 (345)
140 cd08275 MDR3 Medium chain dehy 27.4 59 0.0013 26.1 2.7 25 94-127 63-87 (337)
141 PF11901 DUF3421: Protein of u 27.2 80 0.0017 23.6 3.2 48 87-136 68-118 (119)
142 PRK10861 signal peptidase I; P 26.9 2.9E+02 0.0062 24.6 7.0 63 58-128 91-160 (324)
143 PRK10671 copA copper exporting 26.8 1E+02 0.0023 29.9 4.7 50 81-135 342-395 (834)
144 TIGR00061 L21 ribosomal protei 26.1 2.4E+02 0.0053 20.8 5.6 21 117-137 12-35 (101)
145 cd05289 MDR_like_2 alcohol deh 25.9 63 0.0014 25.4 2.5 26 94-128 66-91 (309)
146 cd08243 quinone_oxidoreductase 25.8 63 0.0014 25.8 2.6 23 94-127 63-85 (320)
147 cd08256 Zn_ADH2 Alcohol dehydr 25.7 67 0.0015 26.7 2.8 25 95-126 70-94 (350)
148 KOG3163 Uncharacterized conser 25.5 1E+02 0.0023 26.4 3.9 78 44-131 152-243 (260)
149 cd05288 PGDH Prostaglandin deh 25.2 61 0.0013 26.3 2.4 23 94-127 71-93 (329)
150 PRK14875 acetoin dehydrogenase 25.0 3.1E+02 0.0067 22.6 6.6 17 86-102 6-22 (371)
151 PF00829 Ribosomal_L21p: Ribos 24.8 1.3E+02 0.0029 21.8 3.9 21 117-137 13-36 (96)
152 cd04456 S1_IF1A_like S1_IF1A_l 24.6 79 0.0017 22.3 2.6 22 65-86 40-61 (78)
153 cd08242 MDR_like Medium chain 23.9 70 0.0015 26.0 2.6 21 94-126 57-77 (319)
154 TIGR01512 ATPase-IB2_Cd heavy 23.6 1.2E+02 0.0027 27.8 4.4 37 94-135 88-127 (536)
155 cd08276 MDR7 Medium chain dehy 23.6 76 0.0017 25.5 2.7 25 94-127 64-88 (336)
156 PF13856 Gifsy-2: ATP-binding 23.5 1.6E+02 0.0035 20.8 4.1 37 110-148 50-86 (95)
157 PF12508 DUF3714: Protein of u 23.2 1.6E+02 0.0034 24.4 4.5 53 65-122 66-125 (200)
158 TIGR02754 sod_Ni_protease nick 23.2 2.5E+02 0.0054 19.0 5.0 45 58-103 7-56 (90)
159 cd08247 AST1_like AST1 is a cy 23.0 76 0.0016 26.4 2.6 26 94-127 65-90 (352)
160 PRK02268 hypothetical protein; 22.8 41 0.00088 26.6 0.9 16 111-126 28-44 (141)
161 CHL00075 rpl21 ribosomal prote 22.7 2.3E+02 0.005 21.3 4.9 21 117-137 15-38 (108)
162 PF11302 DUF3104: Protein of u 22.7 51 0.0011 23.6 1.3 15 116-130 4-18 (75)
163 PF07378 FlbT: Flagellar prote 22.6 78 0.0017 24.4 2.4 34 116-150 3-42 (126)
164 PF05203 Hom_end_hint: Hom_end 22.5 53 0.0011 27.3 1.6 29 101-129 3-32 (215)
165 PF08206 OB_RNB: Ribonuclease 22.2 1.2E+02 0.0027 19.6 3.0 12 65-76 33-44 (58)
166 PF01052 SpoA: Surface present 22.1 1.1E+02 0.0024 20.4 2.9 24 117-140 28-53 (77)
167 cd00148 PROF Profilin binds ac 21.6 92 0.002 23.3 2.6 17 133-149 61-77 (127)
168 PRK05573 rplU 50S ribosomal pr 21.2 3.5E+02 0.0075 20.0 5.7 12 117-128 13-24 (103)
169 COG1417 Uncharacterized conser 21.0 3.3E+02 0.0072 24.1 6.2 26 83-108 96-121 (288)
170 cd08241 QOR1 Quinone oxidoredu 20.9 95 0.0021 24.4 2.7 26 94-128 64-89 (323)
171 cd04451 S1_IF1 S1_IF1: Transla 20.7 72 0.0016 20.9 1.7 11 117-127 40-50 (64)
172 TIGR01525 ATPase-IB_hvy heavy 20.6 1.7E+02 0.0038 26.9 4.7 39 94-137 89-130 (556)
173 PF00235 Profilin: Profilin; 20.5 88 0.0019 22.6 2.3 17 132-148 59-75 (121)
174 TIGR00739 yajC preprotein tran 20.4 2.2E+02 0.0047 20.2 4.2 22 117-138 37-59 (84)
175 PRK06763 F0F1 ATP synthase sub 20.2 93 0.002 26.4 2.6 34 94-127 41-84 (213)
176 TIGR02825 B4_12hDH leukotriene 20.2 81 0.0018 26.0 2.2 21 94-126 64-84 (325)
177 PF12852 Cupin_6: Cupin 20.1 77 0.0017 24.4 2.0 22 110-131 51-72 (186)
178 TIGR00523 eIF-1A eukaryotic/ar 20.1 1.6E+02 0.0035 21.7 3.6 17 116-132 56-72 (99)
179 PRK10689 transcription-repair 20.0 1.3E+02 0.0027 31.1 3.9 31 117-147 476-514 (1147)
No 1
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=229.24 Aligned_cols=95 Identities=37% Similarity=0.718 Sum_probs=91.9
Q ss_pred ccceecCCeEEEEecCCCCcccceEEecCC-CCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECCE
Q 044904 61 KRLIPTLNRVLVEKIVPPSKTNAGILLPEK-SSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEK 139 (155)
Q Consensus 61 ~~i~PLgDRVLVk~~e~e~kT~gGIiLP~s-a~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg~ 139 (155)
++|+||||||||++.++|++|+|||+||++ ++|++.|+|||||+|..+++|+++|++||+||+|+|++|+|+++++||+
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 379999999999999999999999999999 4799999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCceEEEecC
Q 044904 140 DYHLYRDEEILGTLHD 155 (155)
Q Consensus 140 ey~ivre~DILAvi~~ 155 (155)
+|++++++||||++++
T Consensus 81 eylil~e~DILAiv~~ 96 (96)
T COG0234 81 EYLILSESDILAIVEK 96 (96)
T ss_pred EEEEechHHeeEEecC
Confidence 9999999999999974
No 2
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=100.00 E-value=1.3e-35 Score=217.24 Aligned_cols=93 Identities=39% Similarity=0.720 Sum_probs=90.4
Q ss_pred cceecCCeEEEEecCCCCcccceEEecCC-CCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECCEE
Q 044904 62 RLIPTLNRVLVEKIVPPSKTNAGILLPEK-SSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKD 140 (155)
Q Consensus 62 ~i~PLgDRVLVk~~e~e~kT~gGIiLP~s-a~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg~e 140 (155)
+|+||+|||||++.+++++|+|||+||++ ++++++|+|+|||+|+.+++|++.|++||+||+|+|++|+|++|+++|++
T Consensus 2 ~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~~ 81 (95)
T PRK00364 2 NLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGEE 81 (95)
T ss_pred cceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCEE
Confidence 69999999999999999999999999999 57999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceEEEec
Q 044904 141 YHLYRDEEILGTLH 154 (155)
Q Consensus 141 y~ivre~DILAvi~ 154 (155)
|++++++||||+++
T Consensus 82 y~iv~~~DIlavi~ 95 (95)
T PRK00364 82 YLILRESDILAIVE 95 (95)
T ss_pred EEEEEHHHEEEEeC
Confidence 99999999999985
No 3
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=100.00 E-value=1.9e-34 Score=210.16 Aligned_cols=92 Identities=42% Similarity=0.830 Sum_probs=89.1
Q ss_pred cceecCCeEEEEecCCCCcccceEEecCCC-CCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECCEE
Q 044904 62 RLIPTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKD 140 (155)
Q Consensus 62 ~i~PLgDRVLVk~~e~e~kT~gGIiLP~sa-~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg~e 140 (155)
+|+||+|||||++.++|++|+|||+||+++ +++++|+|+|||+|+.+++|++.|++||+||+|+|++|+|++|+++|++
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE 80 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence 489999999999999999999999999994 7999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceEEEe
Q 044904 141 YHLYRDEEILGTL 153 (155)
Q Consensus 141 y~ivre~DILAvi 153 (155)
|+|++++||||++
T Consensus 81 y~i~~~~DIla~i 93 (93)
T cd00320 81 YLILRESDILAVI 93 (93)
T ss_pred EEEEEHHHEEEEC
Confidence 9999999999986
No 4
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=100.00 E-value=6.6e-34 Score=207.61 Aligned_cols=89 Identities=30% Similarity=0.562 Sum_probs=84.0
Q ss_pred cceecCCeEEEEecCCCCcccceEEecCC-CCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECCEE
Q 044904 62 RLIPTLNRVLVEKIVPPSKTNAGILLPEK-SSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKD 140 (155)
Q Consensus 62 ~i~PLgDRVLVk~~e~e~kT~gGIiLP~s-a~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg~e 140 (155)
+|+||+|||||++.++|++|+|||+||++ ++|++.|+|||||+|.. ..|++||+||+|+|++|+|++|+++|++
T Consensus 2 ~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~ 76 (91)
T PRK14533 2 KVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKIDDED 76 (91)
T ss_pred CceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEECCEE
Confidence 79999999999999999999999999999 57999999999999852 4588999999999999999999999999
Q ss_pred EEEEecCceEEEecC
Q 044904 141 YHLYRDEEILGTLHD 155 (155)
Q Consensus 141 y~ivre~DILAvi~~ 155 (155)
|++++++||||+++|
T Consensus 77 y~iv~e~DILa~i~~ 91 (91)
T PRK14533 77 YIIIDVNDILAKIEE 91 (91)
T ss_pred EEEEEhHhEEEEeeC
Confidence 999999999999986
No 5
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=100.00 E-value=6.6e-34 Score=211.08 Aligned_cols=89 Identities=42% Similarity=0.786 Sum_probs=83.9
Q ss_pred ccceecCCeEEEEecCCCCcccceEEecCC-CCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECCE
Q 044904 61 KRLIPTLNRVLVEKIVPPSKTNAGILLPEK-SSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEK 139 (155)
Q Consensus 61 ~~i~PLgDRVLVk~~e~e~kT~gGIiLP~s-a~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg~ 139 (155)
++|+||+|||||++.++|++|+|||+||++ ++|+++|+|||||+|..+ .|++||+||+|+|++|+|++|++||+
T Consensus 10 ~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gtevk~dg~ 84 (100)
T PTZ00414 10 KKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSSVKVEGE 84 (100)
T ss_pred ccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcEEEECCE
Confidence 479999999999999999999999999999 479999999999999753 37899999999999999999999999
Q ss_pred EEEEEecCceEEEec
Q 044904 140 DYHLYRDEEILGTLH 154 (155)
Q Consensus 140 ey~ivre~DILAvi~ 154 (155)
+|++++++||||+++
T Consensus 85 ey~i~~e~DILavi~ 99 (100)
T PTZ00414 85 EFFLYNEDSLLGVLQ 99 (100)
T ss_pred EEEEEEhHHEEEEec
Confidence 999999999999986
No 6
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=100.00 E-value=1.1e-32 Score=199.98 Aligned_cols=92 Identities=43% Similarity=0.805 Sum_probs=85.9
Q ss_pred cceecCCeEEEEecCCCCcccceEEecCCC-CCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECCEE
Q 044904 62 RLIPTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKD 140 (155)
Q Consensus 62 ~i~PLgDRVLVk~~e~e~kT~gGIiLP~sa-~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg~e 140 (155)
+|+||+|||||++.+++++|+|||+||+++ +++++|+|||||+|+.+++|+..|+.|++||+|+|++|+|+++++||++
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEK 80 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEE
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEE
Confidence 589999999999999999999999999885 6999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceEEEe
Q 044904 141 YHLYRDEEILGTL 153 (155)
Q Consensus 141 y~ivre~DILAvi 153 (155)
|++++++||||++
T Consensus 81 ~~~~~~~dIlavi 93 (93)
T PF00166_consen 81 YLIVREDDILAVI 93 (93)
T ss_dssp EEEEEGGGEEEEE
T ss_pred EEEEEHHHeEEEC
Confidence 9999999999986
No 7
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-30 Score=192.20 Aligned_cols=95 Identities=57% Similarity=0.997 Sum_probs=89.8
Q ss_pred hhccceecCCeEEEEecCCCCcccceEEecCC-CCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEEC
Q 044904 59 MAKRLIPTLNRVLVEKIVPPSKTNAGILLPEK-SSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLG 137 (155)
Q Consensus 59 m~~~i~PLgDRVLVk~~e~e~kT~gGIiLP~s-a~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~d 137 (155)
+.+++.|+.|||||++.+++++|+|||+||++ ++|.++|+|+|||+|.+++.|+.+|..||+||+|||++|+|++|+++
T Consensus 7 ~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~l~ 86 (104)
T KOG1641|consen 7 EIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKVKLG 86 (104)
T ss_pred hhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEEecc
Confidence 44689999999999999999999999999999 68999999999999999999999999999999999999999999998
Q ss_pred C-EEEEEEecCceEEEe
Q 044904 138 E-KDYHLYRDEEILGTL 153 (155)
Q Consensus 138 g-~ey~ivre~DILAvi 153 (155)
+ ++|.++|++|+|+++
T Consensus 87 ~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 87 DEDEYHLFRDEDDLLAI 103 (104)
T ss_pred CCceeEEecchhhhhhh
Confidence 4 699999999999875
No 8
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=90.94 E-value=0.21 Score=44.04 Aligned_cols=39 Identities=31% Similarity=0.363 Sum_probs=28.9
Q ss_pred ccceEE-ecCC---CCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 81 TNAGIL-LPEK---SSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 81 T~gGIi-LP~s---a~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
-..||| .+.- -.+-..|+|+|||.|.. +.|+||+|.|-.
T Consensus 54 ~RkGlY~~~plPytpGmEaaGvVvAvG~gvt---------drkvGDrVayl~ 96 (336)
T KOG1197|consen 54 FRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT---------DRKVGDRVAYLN 96 (336)
T ss_pred HhccccCCCCCCcCCCcccceEEEEecCCcc---------ccccccEEEEec
Confidence 345788 3222 24567899999999975 478999999865
No 9
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=90.28 E-value=0.3 Score=34.87 Aligned_cols=26 Identities=46% Similarity=0.770 Sum_probs=20.8
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
-..|+|+++|++.. .+++||+|....
T Consensus 38 E~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 38 EGVGVVVAVGPGVT---------DFKVGDRVVVSP 63 (109)
T ss_dssp EEEEEEEEESTTTT---------SSGTT-EEEEES
T ss_pred ceeeeeeeeccccc---------cccccceeeeec
Confidence 36899999999864 489999999854
No 10
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.50 E-value=0.53 Score=42.43 Aligned_cols=53 Identities=36% Similarity=0.436 Sum_probs=36.4
Q ss_pred eecCCeEEEEecCC-----CCcccceEEecCCC----CCceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 64 IPTLNRVLVEKIVP-----PSKTNAGILLPEKS----SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 64 ~PLgDRVLVk~~e~-----e~kT~gGIiLP~sa----~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
-|=-|-||||.... ..-+-+|.+ |+.- .----|.|.+||+|.. +||+||+|+.
T Consensus 24 ~P~~gEVlVri~AtGVCHTD~~~~~G~~-p~~~P~vLGHEgAGiVe~VG~gVt---------~vkpGDhVI~ 85 (366)
T COG1062 24 PPRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVLGHEGAGIVEAVGEGVT---------SVKPGDHVIL 85 (366)
T ss_pred CCCCCeEEEEEEEeeccccchhhhcCCC-CCCCceecccccccEEEEecCCcc---------ccCCCCEEEE
Confidence 37788999998652 333444433 3331 1235699999999986 7999999985
No 11
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=82.67 E-value=1.7 Score=37.46 Aligned_cols=72 Identities=29% Similarity=0.425 Sum_probs=45.4
Q ss_pred ecCCeEEEEecCC-----CCcccceEE-----ecCCCCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC-C--Cc
Q 044904 65 PTLNRVLVEKIVP-----PSKTNAGIL-----LPEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN-Y--GG 131 (155)
Q Consensus 65 PLgDRVLVk~~e~-----e~kT~gGIi-----LP~sa~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~-y--~G 131 (155)
|=.+.|||+.... +.....|-. +|.....-..|+|+|||++.. ..++||+|.+.. . .|
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~---------~~~~GdrV~~~~~~~~~G 95 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVT---------GFKVGDRVAALGGVGRDG 95 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCC---------CcCCCCEEEEccCCCCCC
Confidence 6678999998752 223333321 222223457899999999874 348999999984 2 22
Q ss_pred eEEEECCEEEEEEecCceE
Q 044904 132 DHVKLGEKDYHLYRDEEIL 150 (155)
Q Consensus 132 ~evk~dg~ey~ivre~DIL 150 (155)
.--+|..+.++.+.
T Consensus 96 -----~~AEy~~v~a~~~~ 109 (326)
T COG0604 96 -----GYAEYVVVPADWLV 109 (326)
T ss_pred -----cceeEEEecHHHce
Confidence 13567776665443
No 12
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=80.22 E-value=4 Score=36.62 Aligned_cols=59 Identities=32% Similarity=0.568 Sum_probs=37.9
Q ss_pred eecCCeEEEEecCCCC-----cccceEE-----ecCCCCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCC-ce
Q 044904 64 IPTLNRVLVEKIVPPS-----KTNAGIL-----LPEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYG-GD 132 (155)
Q Consensus 64 ~PLgDRVLVk~~e~e~-----kT~gGIi-----LP~sa~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~-G~ 132 (155)
.|..| |+||-..+.- -+--|.| +|.-...-..|+||+||++.. .+|+||+|+-..-+ |+
T Consensus 45 ~~~s~-v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vk---------gfk~Gd~VIp~~a~lGt 114 (354)
T KOG0025|consen 45 VPGSD-VLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVK---------GFKPGDWVIPLSANLGT 114 (354)
T ss_pred CCCCc-eeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcC---------ccCCCCeEeecCCCCcc
Confidence 46677 9999876432 2234555 121123457899999999653 38999999966533 53
No 13
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=79.98 E-value=2.1 Score=35.00 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCccC-CCCceeeeeeecCCEEEecC
Q 044904 95 NSGKVIAVGPGARD-KEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 95 ~~G~VVAVG~G~~~-~~G~~~P~~VKvGD~Vlf~~ 128 (155)
..|+|++||++... ..|. .+++||+|....
T Consensus 6 ~~G~V~~vG~~v~~~~~~~----~~~~GdrV~~~~ 36 (280)
T TIGR03366 6 IVGEVVALRGGFTPADDGV----PLRLGQRVVWSV 36 (280)
T ss_pred cceEEEEeCCCccccccCC----CCCCCCEEEEcC
Confidence 46999999998741 2222 489999998743
No 14
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=75.35 E-value=2.6 Score=36.95 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|...
T Consensus 69 ~~G~V~~vG~~V~---------~~~vGdrV~~~ 92 (393)
T TIGR02819 69 ITGEVIEKGRDVE---------FIKIGDIVSVP 92 (393)
T ss_pred eEEEEEEEcCccc---------cccCCCEEEEe
Confidence 6899999999864 48999999874
No 15
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=74.37 E-value=6 Score=35.27 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=33.1
Q ss_pred eecCCeEEEEecCC-----CCcc----cceEEecCCCCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 64 IPTLNRVLVEKIVP-----PSKT----NAGILLPEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 64 ~PLgDRVLVk~~e~-----e~kT----~gGIiLP~sa~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
.|=.+-|||+.... .--. -+...+|---.--..|+|++||++.. .+|+||+|-.
T Consensus 25 ~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~---------~~k~GDrVgV 87 (339)
T COG1064 25 EPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVT---------GLKVGDRVGV 87 (339)
T ss_pred CCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCc---------cCCCCCEEEe
Confidence 35568888887541 0000 01111333322247899999999874 4899999998
No 16
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.82 E-value=3 Score=37.68 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=33.7
Q ss_pred ceecCCeEEEEecC-----CCCcccceEEecCCC-----CCceeeEEEEEcCCccCCCCceeeeeeecCCEEE
Q 044904 63 LIPTLNRVLVEKIV-----PPSKTNAGILLPEKS-----SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVL 125 (155)
Q Consensus 63 i~PLgDRVLVk~~e-----~e~kT~gGIiLP~sa-----~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vl 125 (155)
-.|-...|.||... .+..+-+|-- |+.+ .--..|.|.+||+|.. .||+||+|+
T Consensus 28 ~pPka~EVRIKI~~t~vCHTD~~~~~g~~-~~~~fP~IlGHEaaGIVESvGegV~---------~vk~GD~Vi 90 (375)
T KOG0022|consen 28 APPKAHEVRIKILATGVCHTDAYVWSGKD-PEGLFPVILGHEAAGIVESVGEGVT---------TVKPGDHVI 90 (375)
T ss_pred CCCCCceEEEEEEEEeeccccceeecCCC-ccccCceEecccceeEEEEecCCcc---------ccCCCCEEe
Confidence 34777777777654 2222333322 2222 1235799999999875 699999998
No 17
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=72.50 E-value=18 Score=28.04 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=27.4
Q ss_pred HhhhccceecCCeEEEEecCC--CCcccceEEecCC---CCCceeeEEEEEc
Q 044904 57 KAMAKRLIPTLNRVLVEKIVP--PSKTNAGILLPEK---SSKLNSGKVIAVG 103 (155)
Q Consensus 57 ~~m~~~i~PLgDRVLVk~~e~--e~kT~gGIiLP~s---a~k~~~G~VVAVG 103 (155)
.+|.-.|.+ ||+||+.+..- .+-..|.|++=.. ..+.....|+++.
T Consensus 28 ~SM~Ptl~~-Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~p 78 (163)
T TIGR02227 28 GSMEPTLKE-GDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKRVIGLP 78 (163)
T ss_pred cccccchhC-CCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEEEEecC
Confidence 356655654 99999998632 3344566776332 2344566666664
No 18
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=72.41 E-value=4.9 Score=34.86 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=19.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|..
T Consensus 67 E~aG~Vv~vG~~v~---------~~~vGdrV~~ 90 (375)
T PLN02178 67 EIVGIATKVGKNVT---------KFKEGDRVGV 90 (375)
T ss_pred eeeEEEEEECCCCC---------ccCCCCEEEE
Confidence 36799999999753 4789999985
No 19
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=72.29 E-value=7.2 Score=32.89 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.2
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 63 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 87 (329)
T TIGR02822 63 EVVGEVAGRGADAG---------GFAVGDRVGIA 87 (329)
T ss_pred ceEEEEEEECCCCc---------ccCCCCEEEEc
Confidence 36899999999753 47899999853
No 20
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=71.74 E-value=3.4 Score=34.84 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.1
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++ . .+++||+|+..
T Consensus 65 ~~G~V~~vG~~-~---------~~~vGdrV~~~ 87 (355)
T cd08230 65 ALGVVEEVGDG-S---------GLSPGDLVVPT 87 (355)
T ss_pred cceEEEEecCC-C---------CCCCCCEEEec
Confidence 57999999986 3 48999999864
No 21
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=68.49 E-value=4.8 Score=34.44 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=19.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
-..|+|+++|++.. .+++||+|..
T Consensus 73 E~~G~V~~vG~~v~---------~~~vGdrV~~ 96 (360)
T PLN02586 73 EIVGIVTKLGKNVK---------KFKEGDRVGV 96 (360)
T ss_pred ceeEEEEEECCCCC---------ccCCCCEEEE
Confidence 36799999999763 4799999974
No 22
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=68.21 E-value=15 Score=30.79 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=29.3
Q ss_pred CCCceeeeeeecCCEEEecCCC-------ceEEEECCEEEEEEecCce
Q 044904 109 KEGNTIPVAFKEGDTVLLPNYG-------GDHVKLGEKDYHLYRDEEI 149 (155)
Q Consensus 109 ~~G~~~P~~VKvGD~Vlf~~y~-------G~evk~dg~ey~ivre~DI 149 (155)
.+|...|+-++.||+|+|..++ |-.++.+-+.|-+...+++
T Consensus 87 ~~~syR~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~a~~~v 134 (203)
T COG4384 87 QHGSYRITGLKAGETVIYNHEGAKIVLTEGGIIEADCKTLTVNAATGV 134 (203)
T ss_pred cCCccccccccCCceEEEeccCcEEEEccCcEEEEeccEEEEecCCce
Confidence 3677788889999999998876 3455566667766555443
No 23
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=67.68 E-value=5.9 Score=25.28 Aligned_cols=31 Identities=23% Similarity=0.553 Sum_probs=19.9
Q ss_pred cceEEecCCCC---CceeeEEEEEcCC-ccCCCCc
Q 044904 82 NAGILLPEKSS---KLNSGKVIAVGPG-ARDKEGN 112 (155)
Q Consensus 82 ~gGIiLP~sa~---k~~~G~VVAVG~G-~~~~~G~ 112 (155)
.|||+.|+... ..-...|+.+||- ....||+
T Consensus 2 ~SGii~~dG~~~q~~~~~a~ivl~GpSG~v~sdG~ 36 (40)
T PF08140_consen 2 PSGIITPDGTNVQFPHGVANIVLIGPSGAVLSDGK 36 (40)
T ss_pred CCceECCCCCEEECCcccceEEEECCceEEeeCCc
Confidence 48999999853 2333389999983 3334443
No 24
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=66.21 E-value=13 Score=29.85 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=20.8
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNY 129 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y 129 (155)
...|.|+++|++.. ..++||+|+.-.+
T Consensus 58 e~~G~V~~vG~~v~---------~~~~Gd~V~~~~~ 84 (312)
T cd08269 58 EGWGRVVALGPGVR---------GLAVGDRVAGLSG 84 (312)
T ss_pred eeEEEEEEECCCCc---------CCCCCCEEEEecC
Confidence 35799999998753 4789999997543
No 25
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=65.91 E-value=13 Score=31.45 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=18.4
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
..|+|+++|.+ .+++||+|.+..
T Consensus 66 ~~G~V~~~g~~-----------~~~vGdrV~~~~ 88 (341)
T cd08237 66 GIGVVVSDPTG-----------TYKVGTKVVMVP 88 (341)
T ss_pred eEEEEEeeCCC-----------ccCCCCEEEECC
Confidence 68999998753 378999998753
No 26
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=65.34 E-value=6.2 Score=32.89 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=28.1
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCC-ceEE-EECC--EEEEEEecCceE
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYG-GDHV-KLGE--KDYHLYRDEEIL 150 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~-G~ev-k~dg--~ey~ivre~DIL 150 (155)
..|+|+++|++. .+++||+|...... .... -.+| .+|+++.++.+.
T Consensus 66 ~~G~V~~vG~~v----------~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~ 115 (308)
T TIGR01202 66 SVGRVVEAGPDT----------GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVC 115 (308)
T ss_pred eEEEEEEecCCC----------CCCCCCEEEEeCccccccccccCCcccceEEcCHHHce
Confidence 689999999863 26899999863210 0000 0012 478877766543
No 27
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=65.07 E-value=6.1 Score=33.69 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=19.3
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
..|+|+++|++.. .+++||+|+.
T Consensus 69 ~~G~V~~vG~~v~---------~~~~GdrV~~ 91 (371)
T cd08281 69 AAGVVVEVGEGVT---------DLEVGDHVVL 91 (371)
T ss_pred ceeEEEEeCCCCC---------cCCCCCEEEE
Confidence 5799999998753 4789999986
No 28
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=64.88 E-value=5.9 Score=33.13 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=20.2
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~vGd~V~~~ 84 (347)
T PRK10309 60 EFSGYVEAVGSGVD---------DLHPGDAVACV 84 (347)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 46799999998753 47899999864
No 29
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=64.13 E-value=6.3 Score=33.40 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=19.8
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 87 (369)
T cd08301 64 AAGIVESVGEGVT---------DLKPGDHVLPV 87 (369)
T ss_pred cceEEEEeCCCCC---------ccccCCEEEEc
Confidence 5799999998753 58999999863
No 30
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=62.33 E-value=53 Score=25.81 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=46.6
Q ss_pred eEEEEecCCCCcccceEEe-----cCCCCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEE
Q 044904 69 RVLVEKIVPPSKTNAGILL-----PEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVK 135 (155)
Q Consensus 69 RVLVk~~e~e~kT~gGIiL-----P~sa~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk 135 (155)
-|-.-+..+|.+..-|+-+ |++...|+.-.++.+|. -+++|++..-.++.|+..+|-.-+++.+.
T Consensus 43 pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGK--TD~~Gki~Wk~~~kG~Y~v~l~n~e~~~~ 112 (131)
T PF10794_consen 43 PVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGK--TDEEGKIIWKNGRKGKYIVFLPNGETQET 112 (131)
T ss_pred cEEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecc--cCCCCcEEEecCCcceEEEEEcCCCceeE
Confidence 3445555566666666433 34455677777778875 46899999999999999999888876654
No 31
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=61.31 E-value=21 Score=30.29 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=19.3
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|++||++.. .+++||+|+..
T Consensus 61 ~~G~V~~vG~~v~---------~~~~Gd~Vv~~ 84 (365)
T cd05279 61 GAGIVESIGPGVT---------TLKPGDKVIPL 84 (365)
T ss_pred eeEEEEEeCCCcc---------cCCCCCEEEEc
Confidence 6799999998642 47899999864
No 32
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=60.88 E-value=8.2 Score=31.99 Aligned_cols=25 Identities=44% Similarity=0.830 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
..|+|+++|++.. .+++||+|+...
T Consensus 62 ~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 86 (339)
T cd08239 62 PAGVVVAVGPGVT---------HFRVGDRVMVYH 86 (339)
T ss_pred ceEEEEEECCCCc---------cCCCCCEEEECC
Confidence 5799999998753 478999998643
No 33
>PLN02827 Alcohol dehydrogenase-like
Probab=60.87 E-value=7.5 Score=33.59 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=20.1
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|+..
T Consensus 71 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 94 (378)
T PLN02827 71 ASGIVESIGEGVT---------EFEKGDHVLTV 94 (378)
T ss_pred ceEEEEEcCCCCc---------ccCCCCEEEEe
Confidence 5799999999763 47899999864
No 34
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=60.78 E-value=8 Score=31.99 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=20.0
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
-..|+|+++|++.. .+++||+|..-
T Consensus 75 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 99 (345)
T cd08293 75 DGGGVGVVEESKHQ---------KFAVGDIVTSF 99 (345)
T ss_pred EeeEEEEEeccCCC---------CCCCCCEEEec
Confidence 36799999998753 47899999863
No 35
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=59.79 E-value=8.8 Score=32.82 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|...
T Consensus 63 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (368)
T TIGR02818 63 GAGIVEAVGEGVT---------SVKVGDHVIPL 86 (368)
T ss_pred cEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 6799999998763 58999999864
No 36
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=59.50 E-value=18 Score=29.26 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=20.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|+|+++|++.. .+++||+|+...
T Consensus 65 e~~G~V~~~G~~v~---------~~~~Gd~V~~~~ 90 (324)
T cd08292 65 EAVGVVDAVGEGVK---------GLQVGQRVAVAP 90 (324)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEecc
Confidence 46899999998653 478999998754
No 37
>PLN02740 Alcohol dehydrogenase-like
Probab=58.88 E-value=8.6 Score=33.04 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.7
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|+..
T Consensus 73 ~~G~V~~vG~~v~---------~~~vGdrV~~~ 96 (381)
T PLN02740 73 AAGIVESVGEGVE---------DLKAGDHVIPI 96 (381)
T ss_pred ceEEEEEeCCCCC---------cCCCCCEEEec
Confidence 5799999998753 47899999864
No 38
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=58.84 E-value=8.7 Score=32.68 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 63 E~~G~V~~vG~~v~---------~~~vGdrV~~~ 87 (368)
T cd08300 63 EGAGIVESVGEGVT---------SVKPGDHVIPL 87 (368)
T ss_pred ceeEEEEEeCCCCc---------cCCCCCEEEEc
Confidence 36799999998753 47899999864
No 39
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=58.24 E-value=9.1 Score=33.37 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=19.8
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|++||++... .+++||+|...
T Consensus 70 ~~G~V~~vG~~v~~--------~~~vGdrV~~~ 94 (410)
T cd08238 70 FAGTILKVGKKWQG--------KYKPGQRFVIQ 94 (410)
T ss_pred cEEEEEEeCCCccC--------CCCCCCEEEEc
Confidence 57999999987531 27899999874
No 40
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=58.11 E-value=9.7 Score=32.20 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=19.4
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
..|+|+++|++.. .+++||+|..
T Consensus 62 ~~G~V~~vG~~v~---------~~~~GdrV~~ 84 (358)
T TIGR03451 62 AAGVVEAVGEGVT---------DVAPGDYVVL 84 (358)
T ss_pred eEEEEEEeCCCCc---------ccCCCCEEEE
Confidence 6799999998753 4789999986
No 41
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=57.64 E-value=10 Score=32.33 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=31.9
Q ss_pred eecCCeEEEEecCCCC-----cccceEE----ecCCCCCceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 64 IPTLNRVLVEKIVPPS-----KTNAGIL----LPEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 64 ~PLgDRVLVk~~e~e~-----kT~gGIi----LP~sa~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
.|-.|.|||+....-- ..-.|-+ .|..-.--..|+|+++|++.. .+++||+|++
T Consensus 31 ~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~---------~~~~Gd~V~~ 93 (357)
T PLN02514 31 KTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVS---------KFTVGDIVGV 93 (357)
T ss_pred CCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcc---------cccCCCEEEE
Confidence 3567889988764311 0011211 111111236799999999753 4789999985
No 42
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=57.25 E-value=25 Score=24.29 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=40.6
Q ss_pred ecCCC---CCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECC
Q 044904 87 LPEKS---SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGE 138 (155)
Q Consensus 87 LP~sa---~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg 138 (155)
+|..| .....|+.+-||-+.. +|+++|-.|.+.....|=.|+|.|+.++.
T Consensus 12 vP~~AV~~G~~~~G~~lYvgR~~~--~g~~~pGKv~p~~~~~yi~~~g~E~~~~~ 64 (71)
T smart00696 12 IPPNAVVGGTDSDGEPLYVGRAYY--EGSLLPGKVVPSHGCAYIPYGGQEVRLDS 64 (71)
T ss_pred CCCCcEEcccCCCCCEEEEEEEEE--CCcEEEEEEEccCCEEEEEECCEEEEcCe
Confidence 36664 3456788999997765 78899999999999999999999998753
No 43
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.63 E-value=4.8 Score=36.28 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
-..|+|..||++.. .+|+||+|....
T Consensus 68 EssGiV~evG~~Vk---------~LkVGDrVaiEp 93 (354)
T KOG0024|consen 68 ESSGIVEEVGDEVK---------HLKVGDRVAIEP 93 (354)
T ss_pred ccccchhhhccccc---------ccccCCeEEecC
Confidence 36799999999875 699999999754
No 44
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=56.01 E-value=16 Score=29.36 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=19.8
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (342)
T cd08266 64 DGAGVVEAVGPGVT---------NVKPGQRVVIY 88 (342)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 35799999998653 47899999865
No 45
>PRK10083 putative oxidoreductase; Provisional
Probab=55.42 E-value=11 Score=31.05 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=19.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 84 (339)
T PRK10083 60 EFFGVIDAVGEGVD---------AARIGERVAVD 84 (339)
T ss_pred ceEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 36799999998652 47899999853
No 46
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=54.95 E-value=11 Score=31.94 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=20.0
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (365)
T cd08277 62 EGAGIVESVGEGVT---------NLKPGDKVIPL 86 (365)
T ss_pred ceeEEEEeeCCCCc---------cCCCCCEEEEC
Confidence 36899999998753 47899999864
No 47
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=54.27 E-value=13 Score=30.96 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=20.1
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (340)
T TIGR00692 62 EVAGEVVGIGPGVE---------GIKVGDYVSVE 86 (340)
T ss_pred ceEEEEEEECCCCC---------cCCCCCEEEEC
Confidence 36899999998652 47899999873
No 48
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=54.25 E-value=12 Score=30.58 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=20.0
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (325)
T cd08264 61 EFAGVVEEVGDHVK---------GVKKGDRVVVY 85 (325)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEEC
Confidence 36799999998753 47899999854
No 49
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=54.22 E-value=13 Score=30.54 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=20.0
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+.-
T Consensus 65 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 89 (336)
T TIGR02817 65 DAAGVVVAVGDEVT---------LFKPGDEVWYA 89 (336)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46899999998753 47899999864
No 50
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=53.78 E-value=12 Score=31.19 Aligned_cols=24 Identities=46% Similarity=0.715 Sum_probs=19.5
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 71 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 94 (351)
T cd08233 71 EFSGVVVEVGSGVT---------GFKVGDRVVV 94 (351)
T ss_pred cceEEEEEeCCCCC---------CCCCCCEEEE
Confidence 36799999998653 4789999986
No 51
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.83 E-value=13 Score=30.81 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=19.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|++||++.. .+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (345)
T cd08287 60 EFVGVVEEVGSEVT---------SVKPGDFVIA 83 (345)
T ss_pred ceEEEEEEeCCCCC---------ccCCCCEEEe
Confidence 36799999998653 4789999985
No 52
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=51.96 E-value=15 Score=30.23 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=19.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (347)
T cd05278 61 EFVGEVVEVGSDVK---------RLKPGDRVSV 84 (347)
T ss_pred ceEEEEEEECCCcc---------ccCCCCEEEe
Confidence 36899999998753 4789999996
No 53
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=51.93 E-value=13 Score=27.03 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=17.3
Q ss_pred eeecCCEEEecCCCceEEEECCEEEEEEe
Q 044904 117 AFKEGDTVLLPNYGGDHVKLGEKDYHLYR 145 (155)
Q Consensus 117 ~VKvGD~Vlf~~y~G~evk~dg~ey~ivr 145 (155)
.+|+||+|+.-... +|+.|+++.
T Consensus 76 ~Lk~GD~V~ll~~~------~gQ~yiVlD 98 (100)
T PF10844_consen 76 GLKVGDKVLLLRVQ------GGQKYIVLD 98 (100)
T ss_pred CCcCCCEEEEEEec------CCCEEEEEE
Confidence 69999999986633 367887764
No 54
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=50.99 E-value=25 Score=29.22 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=15.0
Q ss_pred CCCCceeee-eeecCCEEEecCCCc
Q 044904 108 DKEGNTIPV-AFKEGDTVLLPNYGG 131 (155)
Q Consensus 108 ~~~G~~~P~-~VKvGD~Vlf~~y~G 131 (155)
.++|..++| ++++||+|+--+-.|
T Consensus 21 ~~~G~~k~m~~L~iGD~Vla~d~~G 45 (217)
T PF01079_consen 21 LEDGGRKRMSDLKIGDRVLAVDSDG 45 (217)
T ss_dssp BTTS-EEEGGG--TT-EEEEE-TTS
T ss_pred eCCCCEeEHHHCCCCCEEEEecCCC
Confidence 468878888 599999999988555
No 55
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=50.82 E-value=14 Score=31.37 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=19.4
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 85 (365)
T cd08278 62 EGAGVVEAVGSAVT---------GLKPGDHVVL 85 (365)
T ss_pred ceeEEEEEeCCCcc---------cCCCCCEEEE
Confidence 36799999998642 4799999984
No 56
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=49.97 E-value=15 Score=30.40 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 61 e~~G~V~~~G~~~~---------~~~~Gd~V~~ 84 (345)
T cd08260 61 EFAGVVVEVGEDVS---------RWRVGDRVTV 84 (345)
T ss_pred ceeEEEEEECCCCc---------cCCCCCEEEE
Confidence 46799999998642 4799999986
No 57
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=49.91 E-value=16 Score=30.21 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (337)
T cd08261 60 ELSGEVVEVGEGVA---------GLKVGDRVVV 83 (337)
T ss_pred ccEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 46799999998652 4789999996
No 58
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=49.75 E-value=17 Score=28.06 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|+|+++|++.. .+++||+|+...
T Consensus 36 e~~G~v~~~G~~v~---------~~~~Gd~V~~~~ 61 (271)
T cd05188 36 EGAGVVVEVGPGVT---------GVKVGDRVVVLP 61 (271)
T ss_pred ccEEEEEEECCCCC---------cCCCCCEEEEcC
Confidence 35799999998542 478999999754
No 59
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=49.73 E-value=16 Score=30.22 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=19.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++... .+++||+|+..
T Consensus 67 e~~G~V~~vG~~v~~--------~~~vGd~V~~~ 92 (324)
T cd08291 67 EGSGTVVAAGGGPLA--------QSLIGKRVAFL 92 (324)
T ss_pred ceEEEEEEECCCccc--------cCCCCCEEEec
Confidence 467999999987531 27899999863
No 60
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=49.54 E-value=16 Score=30.10 Aligned_cols=24 Identities=46% Similarity=0.724 Sum_probs=19.4
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|+.-
T Consensus 65 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 88 (340)
T cd05284 65 NAGWVEEVGSGVD---------GLKEGDPVVVH 88 (340)
T ss_pred eeEEEEEeCCCCC---------cCcCCCEEEEc
Confidence 5799999998653 47899999853
No 61
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=49.37 E-value=17 Score=29.96 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=19.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 60 ~~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (343)
T cd08235 60 EIAGEIVEVGDGVT---------GFKVGDRVFV 83 (343)
T ss_pred ceEEEEEeeCCCCC---------CCCCCCEEEE
Confidence 46899999998753 4789999996
No 62
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=49.12 E-value=16 Score=30.13 Aligned_cols=24 Identities=42% Similarity=0.655 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (344)
T cd08284 60 EFVGEVVEVGPEVR---------TLKVGDRVVS 83 (344)
T ss_pred ceEEEEEeeCCCcc---------ccCCCCEEEE
Confidence 36799999998653 4789999986
No 63
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=48.74 E-value=16 Score=30.11 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeee-eecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVA-FKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~-VKvGD~Vlf~ 127 (155)
...|+|+++|++.. . +++||+|+.-
T Consensus 70 e~~G~V~~vG~~v~---------~~~~~Gd~V~~~ 95 (341)
T cd08262 70 EFCGEVVDYGPGTE---------RKLKVGTRVTSL 95 (341)
T ss_pred ceeEEEEEeCCCCc---------CCCCCCCEEEec
Confidence 36799999998652 3 7899999965
No 64
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.36 E-value=18 Score=30.27 Aligned_cols=25 Identities=40% Similarity=0.667 Sum_probs=20.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 84 (351)
T cd08285 60 EAVGVVEEVGSEVK---------DFKPGDRVIVP 84 (351)
T ss_pred ceEEEEEEecCCcC---------ccCCCCEEEEc
Confidence 46799999998753 47899999973
No 65
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=48.07 E-value=34 Score=27.24 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=20.3
Q ss_pred CceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 93 KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 93 k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
-...|+|+++|++.. ..++||+|+..
T Consensus 26 ~e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 51 (277)
T cd08255 26 YSSVGRVVEVGSGVT---------GFKPGDRVFCF 51 (277)
T ss_pred cceeEEEEEeCCCCC---------CCCCCCEEEec
Confidence 356799999998642 36899999875
No 66
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=47.91 E-value=17 Score=30.05 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=19.8
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~V~~~G~~v~---------~~~~Gd~V~~~ 85 (345)
T cd08286 61 EGVGVVEEVGSAVT---------NFKVGDRVLIS 85 (345)
T ss_pred cceEEEEEeccCcc---------ccCCCCEEEEC
Confidence 36799999998653 47899999863
No 67
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=47.36 E-value=29 Score=29.20 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=38.5
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECC---EEEEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGE---KDYHLYRD 146 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg---~ey~ivre 146 (155)
.++.-|==|.|..+.||+.. .|+.||.+.++.|.=..+.--| -+|++.++
T Consensus 201 eh~~yiL~G~G~~~~~g~~~--~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd 253 (260)
T TIGR03214 201 EHGLYVLEGKGVYNLDNNWV--PVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKD 253 (260)
T ss_pred eeEEEEEeceEEEEECCEEE--EecCCCEEEECCCCCEEEEecCCCcEEEEEEcc
Confidence 35677777999988888755 6899999999999988887643 36666654
No 68
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=47.12 E-value=20 Score=29.64 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=20.6
Q ss_pred CceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 93 KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 93 k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
....|+|+++|++.. .+++||+|+.-
T Consensus 58 ~~~~G~V~~~g~~v~---------~~~~Gd~V~~~ 83 (343)
T cd08236 58 HEFSGTVEEVGSGVD---------DLAVGDRVAVN 83 (343)
T ss_pred cceEEEEEEECCCCC---------cCCCCCEEEEc
Confidence 346899999998652 57999999863
No 69
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=46.55 E-value=18 Score=29.76 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=19.0
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
..|+|+++|++.. ..++||+|+.
T Consensus 61 ~~G~v~~vG~~v~---------~~~~Gd~V~~ 83 (339)
T cd08232 61 VSGVVEAVGPGVT---------GLAPGQRVAV 83 (339)
T ss_pred ceEEEEeeCCCCC---------cCCCCCEEEE
Confidence 5799999998653 4789999986
No 70
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=46.54 E-value=18 Score=31.18 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=19.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 85 (386)
T cd08283 61 EFMGVVEEVGPEVR---------NLKVGDRVVVP 85 (386)
T ss_pred cceEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 36799999998643 47999999864
No 71
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=46.13 E-value=19 Score=30.00 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=19.5
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|++
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (337)
T cd05283 60 EIVGIVVAVGSKVT---------KFKVGDRVGV 83 (337)
T ss_pred ceeeEEEEECCCCc---------ccCCCCEEEE
Confidence 36799999998753 5889999974
No 72
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=45.86 E-value=20 Score=29.57 Aligned_cols=25 Identities=36% Similarity=0.621 Sum_probs=20.1
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (306)
T cd08258 62 EFSGTIVEVGPDVE---------GWKVGDRVVSE 86 (306)
T ss_pred ceEEEEEEECCCcC---------cCCCCCEEEEc
Confidence 36799999998653 47899999874
No 73
>PLN02702 L-idonate 5-dehydrogenase
Probab=45.47 E-value=19 Score=30.31 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 80 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 103 (364)
T PLN02702 80 ECAGIIEEVGSEVK---------HLVVGDRVAL 103 (364)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEE
Confidence 35799999998653 4789999986
No 74
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=44.45 E-value=22 Score=29.84 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=21.0
Q ss_pred ceeeEEEEEcCCccC-CCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARD-KEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~-~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++... .+|. .+++||+|+..
T Consensus 61 e~~G~V~~vG~~v~~~~~~~----~~~~Gd~V~~~ 91 (361)
T cd08231 61 EGVGRVVALGGGVTTDVAGE----PLKVGDRVTWS 91 (361)
T ss_pred CCceEEEEeCCCccccccCC----ccCCCCEEEEc
Confidence 357999999987631 0111 37899999875
No 75
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=44.34 E-value=23 Score=28.65 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=19.2
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|.|+++|++.. .+++||+|+-
T Consensus 65 e~~G~v~~vG~~v~---------~~~~Gd~V~~ 88 (334)
T PTZ00354 65 EVAGYVEDVGSDVK---------RFKEGDRVMA 88 (334)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 36899999998642 4789999975
No 76
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=43.75 E-value=23 Score=29.11 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=20.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|.|+++|++.. .+++||+|+...
T Consensus 70 e~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 95 (341)
T cd08290 70 EGVGEVVKVGSGVK---------SLKPGDWVIPLR 95 (341)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEecC
Confidence 36799999998753 478999999754
No 77
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=43.69 E-value=22 Score=30.30 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.4
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (375)
T cd08282 60 EAMGEVEEVGSAVE---------SLKVGDRVVV 83 (375)
T ss_pred ccEEEEEEeCCCCC---------cCCCCCEEEE
Confidence 36799999998642 4789999986
No 78
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=43.66 E-value=93 Score=24.99 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYG 130 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~ 130 (155)
...|.|||+..++ ..|-.++.|+.++|.+.+
T Consensus 57 rs~~Vvia~~d~~------yR~~~L~~GEvalY~~~G 87 (162)
T PF06890_consen 57 RSHGVVIAVEDRR------YRPKGLKPGEVALYDDEG 87 (162)
T ss_pred CcceEEEEeCCcc------ccccCCCCCcEEEEcCCC
Confidence 3466677766544 344458899999988654
No 79
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=43.64 E-value=22 Score=30.09 Aligned_cols=24 Identities=46% Similarity=0.721 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (363)
T cd08279 60 EGAGVVEEVGPGVT---------GVKPGDHVVL 83 (363)
T ss_pred cceEEEEEeCCCcc---------ccCCCCEEEE
Confidence 36799999998653 4789999987
No 80
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=43.34 E-value=24 Score=29.20 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=19.5
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|+..
T Consensus 65 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 88 (341)
T PRK05396 65 FVGEVVEVGSEVT---------GFKVGDRVSGE 88 (341)
T ss_pred eEEEEEEeCCCCC---------cCCCCCEEEEC
Confidence 5799999998653 47899999864
No 81
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.96 E-value=23 Score=29.20 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=19.5
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|.|+++|++.. .+++||+|+..
T Consensus 85 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 108 (350)
T cd08274 85 IVGRVVAVGEGVD---------TARIGERVLVD 108 (350)
T ss_pred ceEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 5799999998753 47899999863
No 82
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=42.85 E-value=24 Score=28.79 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|++.
T Consensus 64 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 88 (327)
T PRK10754 64 EAAGVVSKVGSGVK---------HIKVGDRVVYA 88 (327)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 36799999998753 47899999864
No 83
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=42.56 E-value=24 Score=28.50 Aligned_cols=25 Identities=44% Similarity=0.596 Sum_probs=19.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+.-
T Consensus 61 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 85 (332)
T cd08259 61 EIVGTVEEVGEGVE---------RFKPGDRVILY 85 (332)
T ss_pred cceEEEEEECCCCc---------cCCCCCEEEEC
Confidence 36799999998652 47899999864
No 84
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=42.32 E-value=23 Score=27.34 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=20.2
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|+|+++|++.. .+++||+|+.-.
T Consensus 30 e~~G~v~~~G~~~~---------~~~~Gd~V~~~~ 55 (288)
T smart00829 30 ECAGVVTRVGPGVT---------GLAVGDRVMGLA 55 (288)
T ss_pred eeEEEEEeeCCCCc---------CCCCCCEEEEEc
Confidence 35799999998652 478999999753
No 85
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.64 E-value=25 Score=27.94 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=19.4
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+.-
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (328)
T cd08268 64 EAAGVVEAVGAGVT---------GFAVGDRVSVI 88 (328)
T ss_pred ceEEEEEeeCCCCC---------cCCCCCEEEec
Confidence 36799999998642 47899999853
No 86
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=41.18 E-value=26 Score=29.11 Aligned_cols=24 Identities=42% Similarity=0.699 Sum_probs=19.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|+... .+++||+|+.
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (343)
T cd05285 61 ESAGTVVAVGSGVT---------HLKVGDRVAI 84 (343)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEE
Confidence 46899999997542 4789999985
No 87
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=40.58 E-value=26 Score=30.30 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=18.3
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
..|+|+++| ... ..|+||+|....
T Consensus 63 ~~G~V~evG-~~~---------~~~~GdrVvv~~ 86 (350)
T COG1063 63 FVGEVVEVG-VVR---------GFKVGDRVVVEP 86 (350)
T ss_pred ceEEEEEec-ccc---------CCCCCCEEEECC
Confidence 579999999 432 478899998864
No 88
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=40.19 E-value=26 Score=29.16 Aligned_cols=25 Identities=48% Similarity=0.643 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+.-
T Consensus 73 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 97 (350)
T cd08240 73 EIVGEVVAVGPDAA---------DVKVGDKVLVY 97 (350)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEEC
Confidence 35799999998752 47899999853
No 89
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=39.90 E-value=27 Score=26.91 Aligned_cols=25 Identities=40% Similarity=0.476 Sum_probs=19.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+.-
T Consensus 34 e~~G~v~~~g~~~~---------~~~~Gd~V~~~ 58 (293)
T cd05195 34 ECSGIVTRVGSGVT---------GLKVGDRVMGL 58 (293)
T ss_pred eeeEEEEeecCCcc---------CCCCCCEEEEE
Confidence 45799999998642 47899999864
No 90
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=39.57 E-value=27 Score=30.13 Aligned_cols=24 Identities=46% Similarity=0.720 Sum_probs=19.5
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|+..
T Consensus 85 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 108 (398)
T TIGR01751 85 ASGVVWRVGPGVT---------RWKVGDEVVAS 108 (398)
T ss_pred eEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 5799999998753 47899999864
No 91
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=39.56 E-value=28 Score=28.57 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=19.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (338)
T PRK09422 60 EGIGIVKEVGPGVT---------SLKVGDRVSI 83 (338)
T ss_pred ccceEEEEECCCCc---------cCCCCCEEEE
Confidence 36799999998653 4789999985
No 92
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=39.35 E-value=31 Score=28.22 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=19.5
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 59 ~~~G~v~~vG~~v~---------~~~~Gd~V~~ 82 (334)
T cd08234 59 EFAGVVVAVGSKVT---------GFKVGDRVAV 82 (334)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 46899999998653 4789999986
No 93
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=39.18 E-value=65 Score=26.53 Aligned_cols=23 Identities=48% Similarity=0.798 Sum_probs=18.7
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
..|+|+++|++.. ..++||+|+.
T Consensus 64 ~~G~V~~vG~~~~---------~~~~Gd~V~~ 86 (341)
T cd08297 64 GAGVVVAVGPGVS---------GLKVGDRVGV 86 (341)
T ss_pred cceEEEEeCCCCC---------CCCCCCEEEE
Confidence 6799999998642 4789999985
No 94
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=39.15 E-value=29 Score=28.19 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=18.7
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
..|+|+++|++.. .+++||+|+.
T Consensus 64 ~~G~v~~~G~~v~---------~~~~Gd~V~~ 86 (338)
T cd08254 64 IAGTVVEVGAGVT---------NFKVGDRVAV 86 (338)
T ss_pred ccEEEEEECCCCc---------cCCCCCEEEE
Confidence 5799999998643 4689999985
No 95
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=39.13 E-value=51 Score=30.66 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=34.4
Q ss_pred cceEEecCC-CCCceeeEEEEEcCCccCC---CCceeeeeeecCCEEEecCCCceEEE
Q 044904 82 NAGILLPEK-SSKLNSGKVIAVGPGARDK---EGNTIPVAFKEGDTVLLPNYGGDHVK 135 (155)
Q Consensus 82 ~gGIiLP~s-a~k~~~G~VVAVG~G~~~~---~G~~~P~~VKvGD~Vlf~~y~G~evk 135 (155)
.|-|++=.. ..-|.-|+|++ |....++ +||-.|...++||.| |+|+-+.
T Consensus 112 ~GDii~v~~Ge~iP~Dg~v~~-g~~~vdes~lTGEs~pv~k~~gd~V----~aGt~~~ 164 (562)
T TIGR01511 112 PGDIVKVLPGEKIPVDGTVIE-GESEVDESLVTGESLPVPKKVGDPV----IAGTVNG 164 (562)
T ss_pred CCCEEEECCCCEecCceEEEE-CceEEehHhhcCCCCcEEcCCCCEE----EeeeEEC
Confidence 344444333 33477888888 7766654 799999999999998 5776554
No 96
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=39.05 E-value=30 Score=29.52 Aligned_cols=24 Identities=46% Similarity=0.709 Sum_probs=19.5
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+++||+|+..
T Consensus 89 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 112 (393)
T cd08246 89 ASGIVWAVGEGVK---------NWKVGDEVVVH 112 (393)
T ss_pred eEEEEEEeCCCCC---------cCCCCCEEEEe
Confidence 5799999998753 47899999864
No 97
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=39.01 E-value=32 Score=27.55 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+.-
T Consensus 58 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 82 (305)
T cd08270 58 DAAGVVERAAADGS---------GPAVGARVVGL 82 (305)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 46899999998642 46899999864
No 98
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=38.46 E-value=29 Score=29.77 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=19.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|...
T Consensus 67 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 91 (373)
T cd08299 67 EAAGIVESVGEGVT---------TVKPGDKVIPL 91 (373)
T ss_pred cceEEEEEeCCCCc---------cCCCCCEEEEC
Confidence 36799999998653 47899999864
No 99
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=38.23 E-value=32 Score=27.71 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=20.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|.|+++|++.. .+++||+|+..-
T Consensus 66 e~~G~v~~~G~~v~---------~~~~Gd~V~~~~ 91 (324)
T cd08244 66 EVAGVVDAVGPGVD---------PAWLGRRVVAHT 91 (324)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEcc
Confidence 36899999998643 478999998753
No 100
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.77 E-value=27 Score=31.69 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=18.9
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+.||+... -+|+||+|=..
T Consensus 73 iaG~VvkvGs~V~---------~~kiGD~vGVg 96 (360)
T KOG0023|consen 73 IAGVVVKVGSNVT---------GFKIGDRVGVG 96 (360)
T ss_pred eeEEEEEECCCcc---------cccccCeeeee
Confidence 6799999999753 47889988554
No 101
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=37.68 E-value=32 Score=27.03 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=19.4
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. ..++||+|+..
T Consensus 44 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 68 (303)
T cd08251 44 EASGVVRAVGPHVT---------RLAVGDEVIAG 68 (303)
T ss_pred eeeEEEEEECCCCC---------CCCCCCEEEEe
Confidence 35799999998653 46899999863
No 102
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=36.66 E-value=32 Score=29.53 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=18.8
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
..|+|+++|++.. .+++||+|+.
T Consensus 95 ~~G~V~~vG~~v~---------~~~~Gd~V~~ 117 (384)
T cd08265 95 FSGVVEKTGKNVK---------NFEKGDPVTA 117 (384)
T ss_pred eEEEEEEECCCCC---------CCCCCCEEEE
Confidence 5799999998642 4789999985
No 103
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=36.55 E-value=34 Score=27.99 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=19.1
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|++
T Consensus 60 e~~G~v~~~g~~~~---------~~~~Gd~V~~ 83 (330)
T cd08245 60 EIVGEVVEVGAGVE---------GRKVGDRVGV 83 (330)
T ss_pred cceEEEEEECCCCc---------ccccCCEEEE
Confidence 36799999997643 4789999985
No 104
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=36.41 E-value=53 Score=27.66 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCCceeeeeeecCCEEEecCCCc-eEEEECCEEEEEE
Q 044904 109 KEGNTIPVAFKEGDTVLLPNYGG-DHVKLGEKDYHLY 144 (155)
Q Consensus 109 ~~G~~~P~~VKvGD~Vlf~~y~G-~evk~dg~ey~iv 144 (155)
.+|+.+.+.++.||.++.+.+-| ..+..+++.+.++
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~ 157 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFL 157 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEE
Confidence 46888999999999999999666 4444555555543
No 105
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=36.25 E-value=37 Score=27.36 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=20.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|.|+++|++.. .+++||+|+.-.
T Consensus 63 e~~G~v~~~G~~v~---------~~~~Gd~V~~~~ 88 (323)
T cd05282 63 EGVGVVVEVGSGVS---------GLLVGQRVLPLG 88 (323)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEeC
Confidence 46899999998753 478999999754
No 106
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.02 E-value=34 Score=27.74 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=26.4
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEecCC-CceEEEECCEEEEEEecCce
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNY-GGDHVKLGEKDYHLYRDEEI 149 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y-~G~evk~dg~ey~ivre~DI 149 (155)
..|.|+++|++.. .+++||+|.--.. ++ -.+|+++.++.+
T Consensus 65 ~~G~v~~vG~~v~---------~~~~Gd~V~~~~~~g~------~~~~~~~~~~~~ 105 (331)
T cd08273 65 LVGRVDALGSGVT---------GFEVGDRVAALTRVGG------NAEYINLDAKYL 105 (331)
T ss_pred eEEEEEEeCCCCc---------cCCCCCEEEEeCCCcc------eeeEEEechHHe
Confidence 5799999998653 4789999986432 21 235666655443
No 107
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=35.99 E-value=74 Score=25.89 Aligned_cols=26 Identities=42% Similarity=0.624 Sum_probs=20.2
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|.|+++|++.. .+++||+|+...
T Consensus 67 e~~G~v~~vG~~v~---------~~~~Gd~V~~~~ 92 (329)
T cd08250 67 EGVGEVVAVGEGVT---------DFKVGDAVATMS 92 (329)
T ss_pred eeEEEEEEECCCCC---------CCCCCCEEEEec
Confidence 36799999998642 478999999753
No 108
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=35.88 E-value=37 Score=27.76 Aligned_cols=24 Identities=46% Similarity=0.645 Sum_probs=19.0
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 65 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 88 (329)
T cd08298 65 EIVGRVEAVGPGVT---------RFSVGDRVGV 88 (329)
T ss_pred cccEEEEEECCCCC---------CCcCCCEEEE
Confidence 36799999998652 3789999975
No 109
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa
Probab=35.84 E-value=57 Score=21.90 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=21.6
Q ss_pred hhhccceecCCeEEEEecCCC--CcccceEEecCC-C--CCceeeEEEE
Q 044904 58 AMAKRLIPTLNRVLVEKIVPP--SKTNAGILLPEK-S--SKLNSGKVIA 101 (155)
Q Consensus 58 ~m~~~i~PLgDRVLVk~~e~e--~kT~gGIiLP~s-a--~k~~~G~VVA 101 (155)
+|.-.+.+ ||.|+|.+.... .-..|-+++-.. . .......|++
T Consensus 9 SM~P~i~~-gd~v~v~~~~~~~~~~~~GDiv~~~~~~~~~~~~vkRv~~ 56 (85)
T cd06530 9 SMEPTLQP-GDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIG 56 (85)
T ss_pred CCcCcccC-CCEEEEEEeecccCCCCCCCEEEEeCCCCCCCEEEEEEEE
Confidence 45444444 888888875431 223344554443 2 2344555555
No 110
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=35.59 E-value=32 Score=28.32 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=19.5
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+..
T Consensus 80 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 104 (350)
T cd08248 80 DCSGVVVDIGSGVK---------SFEIGDEVWGA 104 (350)
T ss_pred eeEEEEEecCCCcc---------cCCCCCEEEEe
Confidence 35799999998653 47899999863
No 111
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=35.26 E-value=37 Score=28.16 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=19.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. .+++||+|+.
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~ 84 (333)
T cd08296 61 EVVGRIDAVGEGVS---------RWKVGDRVGV 84 (333)
T ss_pred ceeEEEEEECCCCc---------cCCCCCEEEe
Confidence 36799999998653 4789999986
No 112
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=34.81 E-value=36 Score=26.87 Aligned_cols=25 Identities=48% Similarity=0.679 Sum_probs=19.5
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
..|.|+++|++.. .+++||+|+.-.
T Consensus 65 ~~G~v~~~g~~~~---------~~~~Gd~v~~~~ 89 (325)
T cd08253 65 GAGVVEAVGEGVD---------GLKVGDRVWLTN 89 (325)
T ss_pred eEEEEEeeCCCCC---------CCCCCCEEEEec
Confidence 5799999997543 478999998653
No 113
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=34.80 E-value=34 Score=29.14 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|.|.+||++.. .+++||+|..
T Consensus 81 ~~~G~v~~vg~~v~---------~~~~Gd~V~~ 104 (348)
T PLN03154 81 EGFGVSKVVDSDDP---------NFKPGDLISG 104 (348)
T ss_pred EeeEEEEEEecCCC---------CCCCCCEEEe
Confidence 35789999998752 4789999973
No 114
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=34.60 E-value=84 Score=23.78 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=15.0
Q ss_pred eeecCCEEEecCCCc---eEEE
Q 044904 117 AFKEGDTVLLPNYGG---DHVK 135 (155)
Q Consensus 117 ~VKvGD~Vlf~~y~G---~evk 135 (155)
.+++||+|++....| ++|+
T Consensus 26 tL~~GD~Iv~g~~~Gpi~tkVR 47 (110)
T cd03703 26 TLREGDTIVVCGLNGPIVTKVR 47 (110)
T ss_pred eEecCCEEEEccCCCCceEEEe
Confidence 688999999988776 5554
No 115
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=34.51 E-value=30 Score=24.44 Aligned_cols=29 Identities=34% Similarity=0.629 Sum_probs=18.9
Q ss_pred eecCCEEEecCCCceE------EEECC--EEEEEEec
Q 044904 118 FKEGDTVLLPNYGGDH------VKLGE--KDYHLYRD 146 (155)
Q Consensus 118 VKvGD~Vlf~~y~G~e------vk~dg--~ey~ivre 146 (155)
+++||.|+++.++-.. .+++| ++|+++.-
T Consensus 2 f~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~ 38 (98)
T PF02559_consen 2 FKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEY 38 (98)
T ss_dssp --TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEE
T ss_pred CCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEE
Confidence 5899999999998432 33333 57777754
No 116
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=34.08 E-value=38 Score=28.26 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+--
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (339)
T cd08249 61 DFAGTVVEVGSGVT---------RFKVGDRVAGF 85 (339)
T ss_pred eeeEEEEEeCCCcC---------cCCCCCEEEEE
Confidence 36799999998753 47899999853
No 117
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.85 E-value=39 Score=27.00 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=19.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+.-
T Consensus 63 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 87 (325)
T cd08271 63 DGAGVVVAVGAKVT---------GWKVGDRVAYH 87 (325)
T ss_pred ceEEEEEEeCCCCC---------cCCCCCEEEec
Confidence 36799999998653 46899999964
No 118
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.85 E-value=41 Score=26.80 Aligned_cols=25 Identities=44% Similarity=0.622 Sum_probs=19.8
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+..
T Consensus 65 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 89 (319)
T cd08267 65 DFAGEVVAVGSGVT---------RFKVGDEVFGR 89 (319)
T ss_pred eeeEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 46799999998653 47899999864
No 119
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=33.83 E-value=87 Score=20.79 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=13.2
Q ss_pred EecCCCceEEEECCEEEEEEecCceEEEe
Q 044904 125 LLPNYGGDHVKLGEKDYHLYRDEEILGTL 153 (155)
Q Consensus 125 lf~~y~G~evk~dg~ey~ivre~DILAvi 153 (155)
+..+.+|+=.++.-++--.++..++|+.|
T Consensus 42 I~a~~~G~V~~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 42 VLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EeCCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence 34555663322211111235667777665
No 120
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=33.67 E-value=43 Score=26.31 Aligned_cols=25 Identities=48% Similarity=0.709 Sum_probs=19.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+.-
T Consensus 61 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 85 (320)
T cd05286 61 EGAGVVEAVGPGVT---------GFKVGDRVAYA 85 (320)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEEe
Confidence 46799999998643 47899999874
No 121
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=33.56 E-value=38 Score=28.59 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=20.0
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|++||++.. ..| ..++||+|+.
T Consensus 60 e~~G~v~~vG~~~~-~~~-----~~~~Gd~V~~ 86 (367)
T cd08263 60 EISGEVVEVGPNVE-NPY-----GLSVGDRVVG 86 (367)
T ss_pred ccceEEEEeCCCCC-CCC-----cCCCCCEEEE
Confidence 46799999998653 111 3789999986
No 122
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=33.49 E-value=67 Score=24.95 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.3
Q ss_pred CCCceeeeeeecCCEEEecC
Q 044904 109 KEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 109 ~~G~~~P~~VKvGD~Vlf~~ 128 (155)
+++.+..+++++||+|.+..
T Consensus 51 ~~~dv~~LDlRIGD~Vkv~~ 70 (131)
T PF08605_consen 51 KNEDVKYLDLRIGDTVKVDG 70 (131)
T ss_pred CcccEeeeeeecCCEEEECC
Confidence 45667788999999999876
No 123
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.26 E-value=41 Score=26.76 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=19.4
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+.-
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (326)
T cd08272 64 DVAGVVEAVGEGVT---------RFRVGDEVYGC 88 (326)
T ss_pred ceeEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 35799999997643 47899999853
No 124
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=33.07 E-value=44 Score=28.09 Aligned_cols=23 Identities=43% Similarity=0.820 Sum_probs=18.1
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
..|+|+++|++.. .+ +||+|...
T Consensus 61 ~~G~V~~vG~~v~---------~~-~GdrV~~~ 83 (349)
T TIGR03201 61 ISGRVIQAGAGAA---------SW-IGKAVIVP 83 (349)
T ss_pred ceEEEEEeCCCcC---------CC-CCCEEEEC
Confidence 6799999998753 24 89999864
No 125
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=32.83 E-value=44 Score=27.38 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=19.5
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+..
T Consensus 61 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 85 (334)
T PRK13771 61 EVVGTVEEVGENVK---------GFKPGDRVASL 85 (334)
T ss_pred cceEEEEEeCCCCc---------cCCCCCEEEEC
Confidence 35799999998642 46799999865
No 126
>PRK12784 hypothetical protein; Provisional
Probab=32.69 E-value=94 Score=22.73 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.2
Q ss_pred eeEEEEEcCCccCCCCceeeeeeecCCEEE
Q 044904 96 SGKVIAVGPGARDKEGNTIPVAFKEGDTVL 125 (155)
Q Consensus 96 ~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vl 125 (155)
.=++||||- .|.+.-+.|.+||.|.
T Consensus 42 ~le~v~vGi-----SG~I~~v~Ve~Gq~i~ 66 (84)
T PRK12784 42 ELEKVAVGI-----SGNIRLVNVVVGQQIH 66 (84)
T ss_pred cEEEEEEee-----eeeEEEEEeecCceec
Confidence 346788884 7888889999999886
No 127
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=30.84 E-value=39 Score=25.47 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.2
Q ss_pred eeecCCEEEecCCCc
Q 044904 117 AFKEGDTVLLPNYGG 131 (155)
Q Consensus 117 ~VKvGD~Vlf~~y~G 131 (155)
.+++||+++|.++.+
T Consensus 31 ~ikvGD~I~f~~~~~ 45 (109)
T cd06555 31 QIKVGDKILFNDLDT 45 (109)
T ss_pred cCCCCCEEEEEEcCC
Confidence 589999999999864
No 128
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=29.90 E-value=48 Score=27.03 Aligned_cols=25 Identities=44% Similarity=0.500 Sum_probs=19.8
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. ..++||+|+.-
T Consensus 66 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 90 (336)
T cd08252 66 DASGVVEAVGSEVT---------LFKVGDEVYYA 90 (336)
T ss_pred ceEEEEEEcCCCCC---------CCCCCCEEEEc
Confidence 35799999998652 46899999974
No 129
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=29.59 E-value=1.1e+02 Score=22.44 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=24.6
Q ss_pred eeecCCEEEecCCC--c--eEEEE-CCEEEEEEecCceE
Q 044904 117 AFKEGDTVLLPNYG--G--DHVKL-GEKDYHLYRDEEIL 150 (155)
Q Consensus 117 ~VKvGD~Vlf~~y~--G--~evk~-dg~ey~ivre~DIL 150 (155)
.+++|+.|.|..-+ | .+|+. ||..|+++...|++
T Consensus 2 ~I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 2 PIKVGSYVRYINTGTVGKVVDIKEEDGETWVLLDSTDLY 40 (91)
T ss_pred cceeCCEEEECCCCeEEEEEEEEEeCCCeEEEEccCCce
Confidence 47889999998855 4 45554 57888888777664
No 130
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=29.49 E-value=48 Score=27.82 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=17.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
-..|+|++| +.. .+++||+|...
T Consensus 66 E~~G~V~~v--~v~---------~~~vGdrV~~~ 88 (343)
T PRK09880 66 EVIGKIVHS--DSS---------GLKEGQTVAIN 88 (343)
T ss_pred ccEEEEEEe--cCc---------cCCCCCEEEEC
Confidence 367999999 321 58999999874
No 131
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=29.39 E-value=50 Score=25.98 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=19.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++.. .+++||+|+.-
T Consensus 64 e~~G~v~~vg~~~~---------~~~~Gd~V~~~ 88 (323)
T cd05276 64 EVAGVVVAVGPGVT---------GWKVGDRVCAL 88 (323)
T ss_pred eeEEEEEeeCCCCC---------CCCCCCEEEEe
Confidence 35799999998642 46899999864
No 132
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.39 E-value=64 Score=28.32 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=18.7
Q ss_pred eeecCCEEEecCC----CceEEEECCEEEEEEe
Q 044904 117 AFKEGDTVLLPNY----GGDHVKLGEKDYHLYR 145 (155)
Q Consensus 117 ~VKvGD~Vlf~~y----~G~evk~dg~ey~ivr 145 (155)
.+++||+|...+- .|.+++.. ..|+++|
T Consensus 261 ~~~pGd~vvv~dg~mki~G~d~kV~-t~yiIcr 292 (293)
T COG4079 261 EVEPGDRVVVKDGVMKIDGKDLKVI-TGYIICR 292 (293)
T ss_pred ccCCCCEEEEecCceEeccccceee-eeeEEec
Confidence 4889999998773 24444443 5677765
No 133
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=29.05 E-value=71 Score=22.60 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=10.1
Q ss_pred eeecCCEEEecC
Q 044904 117 AFKEGDTVLLPN 128 (155)
Q Consensus 117 ~VKvGD~Vlf~~ 128 (155)
++++||.|+..-
T Consensus 35 ~~~vGD~VLVH~ 46 (76)
T TIGR00074 35 EVKVGDYVLVHV 46 (76)
T ss_pred CCCCCCEEEEec
Confidence 589999999754
No 134
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=29.00 E-value=1.1e+02 Score=23.46 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=20.6
Q ss_pred CCCceeeeeeecCCEEEecC-CCceEEEEC
Q 044904 109 KEGNTIPVAFKEGDTVLLPN-YGGDHVKLG 137 (155)
Q Consensus 109 ~~G~~~P~~VKvGD~Vlf~~-y~G~evk~d 137 (155)
++|+ |..+++||.++|+. +.|+--..+
T Consensus 79 d~Ge--~v~~~aGD~~~~~~G~~g~W~V~E 106 (116)
T COG3450 79 DGGE--PVEVRAGDSFVFPAGFKGTWEVLE 106 (116)
T ss_pred CCCe--EEEEcCCCEEEECCCCeEEEEEee
Confidence 4564 66899999999998 888655444
No 135
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=28.75 E-value=37 Score=33.94 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=39.8
Q ss_pred EEEEecCCCCcccceEEecCCCCC--ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEECCEEEEEEecC
Q 044904 70 VLVEKIVPPSKTNAGILLPEKSSK--LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDE 147 (155)
Q Consensus 70 VLVk~~e~e~kT~gGIiLP~sa~k--~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~dg~ey~ivre~ 147 (155)
|++.+.|.| .-|.+|=.++.| +..|.|+.=.|.. ..| .+||||+|+- +||...+-+...
T Consensus 757 V~lhR~ENe---GFGFVi~sS~~kp~sgiGrIieGSPAd--RCg-----kLkVGDrilA---------VNG~sI~~lsHa 817 (984)
T KOG3209|consen 757 VVLHRKENE---GFGFVIMSSQNKPESGIGRIIEGSPAD--RCG-----KLKVGDRILA---------VNGQSILNLSHA 817 (984)
T ss_pred eEEecccCC---ceeEEEEecccCCCCCccccccCChhH--hhc-----cccccceEEE---------ecCeeeeccCch
Confidence 667776544 367888777654 4667777655432 356 5899999973 345555555555
Q ss_pred ceEE
Q 044904 148 EILG 151 (155)
Q Consensus 148 DILA 151 (155)
||..
T Consensus 818 div~ 821 (984)
T KOG3209|consen 818 DIVS 821 (984)
T ss_pred hHHH
Confidence 5543
No 136
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=28.10 E-value=59 Score=26.96 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=18.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++.. ..++||+|+.
T Consensus 64 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 87 (341)
T cd05281 64 EFAGEVVEVGEGVT---------RVKVGDYVSA 87 (341)
T ss_pred ceEEEEEEECCCCC---------CCCCCCEEEE
Confidence 36899999998642 3689999976
No 137
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=27.85 E-value=69 Score=25.69 Aligned_cols=49 Identities=14% Similarity=0.277 Sum_probs=28.4
Q ss_pred eeEEEEEcCCccCCCCceeee-eeecCCEEEecCCCceEEEECCEEEEEEecCc
Q 044904 96 SGKVIAVGPGARDKEGNTIPV-AFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEE 148 (155)
Q Consensus 96 ~G~VVAVG~G~~~~~G~~~P~-~VKvGD~Vlf~~y~G~evk~dg~ey~ivre~D 148 (155)
.|.+|=.|- .+..+..+ .+++||.|.+..-.|+...|.=.+-.+++.+|
T Consensus 90 ~Gn~VIAGH----rdt~F~~L~~L~~GD~I~v~~~~g~~~~Y~V~~~~iV~~~d 139 (174)
T TIGR03784 90 QGNSVIAGH----RDTHFAFLQELRPGDVIRLQTPDGQWQSYQVTATRVVDESE 139 (174)
T ss_pred CCcEEEEee----CCccCCChhhCCCCCEEEEEECCCeEEEEEEeEEEEECCcc
Confidence 455555553 12234444 59999999998877765544323333455544
No 138
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=27.70 E-value=58 Score=25.80 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=19.2
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|+... .+++||+|+--
T Consensus 64 e~~G~v~~vg~~~~---------~~~~Gd~V~~~ 88 (325)
T TIGR02824 64 EVAGEVVAVGEGVS---------RWKVGDRVCAL 88 (325)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 36799999997542 46899999863
No 139
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=27.56 E-value=90 Score=26.55 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=28.6
Q ss_pred eeecCCEEEe-cCCCceEEEECCEEEEEEecCceEEEe
Q 044904 117 AFKEGDTVLL-PNYGGDHVKLGEKDYHLYRDEEILGTL 153 (155)
Q Consensus 117 ~VKvGD~Vlf-~~y~G~evk~dg~ey~ivre~DILAvi 153 (155)
.+++||+|.+ +.+....+..-+. |++++...|.+..
T Consensus 305 ~~~vGd~v~~ip~H~c~t~~~~~~-~~vv~~~~v~~~w 341 (345)
T cd07376 305 DLPIGDRVFLVPNHACETVALHDE-LYVVEGGRVAATW 341 (345)
T ss_pred CCCCCCEEEEeCCccccchhcCCE-EEEEECCEEEEEE
Confidence 4899999999 7777777766655 8889988887754
No 140
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=27.38 E-value=59 Score=26.12 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|++.. .+++||+|+.-
T Consensus 63 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 87 (337)
T cd08275 63 ECAGTVEAVGEGVK---------DFKVGDRVMGL 87 (337)
T ss_pred eeEEEEEEECCCCc---------CCCCCCEEEEe
Confidence 36799999998653 46899999864
No 141
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=27.15 E-value=80 Score=23.58 Aligned_cols=48 Identities=19% Similarity=0.463 Sum_probs=37.8
Q ss_pred ecCCC---CCceeeEEEEEcCCccCCCCceeeeeeecCCEEEecCCCceEEEE
Q 044904 87 LPEKS---SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKL 136 (155)
Q Consensus 87 LP~sa---~k~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~y~G~evk~ 136 (155)
+|..+ .....|+.+-||-... +|...|-.|..+..+.|=.|+|.|+.+
T Consensus 68 iP~~av~~G~~~~Ge~lyIgR~~~--~g~~~~GKv~~s~~~~~ip~gG~E~~~ 118 (119)
T PF11901_consen 68 IPPNAVVGGRTEDGEPLYIGRAHY--NGSLIPGKVHPSHKCCYIPYGGKEISF 118 (119)
T ss_pred cCCCcEEcccccCCCEEEEEEEEE--CCeeEEEEEEcCCCEEEEEECCEEEEc
Confidence 45553 3566788999998765 778888889999999999999988864
No 142
>PRK10861 signal peptidase I; Provisional
Probab=26.92 E-value=2.9e+02 Score=24.57 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=32.9
Q ss_pred hhhccceecCCeEEEEecCCCCcccceEEecCC------CCCceeeEEEEEcCCccCCCCcee-eeeeecCCEEEecC
Q 044904 58 AMAKRLIPTLNRVLVEKIVPPSKTNAGILLPEK------SSKLNSGKVIAVGPGARDKEGNTI-PVAFKEGDTVLLPN 128 (155)
Q Consensus 58 ~m~~~i~PLgDRVLVk~~e~e~kT~gGIiLP~s------a~k~~~G~VVAVG~G~~~~~G~~~-P~~VKvGD~Vlf~~ 128 (155)
+|.-.|. -||+|||.+..- |+-+|-. ...+..|.||-.-.-.. .+-..+ -+-=.+||+|.+..
T Consensus 91 SM~PTL~-~GD~IlVnK~~y------g~~~p~~~~~~~~~~~p~RGDIVVF~~P~~-~~~~yIKRVIGlPGD~I~~~~ 160 (324)
T PRK10861 91 SMMPTLL-IGDFILVEKFAY------GIKDPITQTTLIETGHPKRGDIVVFKYPED-PKLDYIKRVVGLPGDKVTYDP 160 (324)
T ss_pred cCcCccc-CCCEEEEEEeec------CccCccccccccccCCCCCCCEEEEecCCC-CCCcEEEEeeecCCcEEEEEe
Confidence 3554454 799999999642 2222221 13567787777643111 111111 11235788888863
No 143
>PRK10671 copA copper exporting ATPase; Provisional
Probab=26.81 E-value=1e+02 Score=29.95 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=33.8
Q ss_pred ccceEEecCC-CCCceeeEEEEEcCCccCC---CCceeeeeeecCCEEEecCCCceEEE
Q 044904 81 TNAGILLPEK-SSKLNSGKVIAVGPGARDK---EGNTIPVAFKEGDTVLLPNYGGDHVK 135 (155)
Q Consensus 81 T~gGIiLP~s-a~k~~~G~VVAVG~G~~~~---~G~~~P~~VKvGD~Vlf~~y~G~evk 135 (155)
..|-+++=.. ..-|.-|+|+. |....++ +||-.|...++||.|+ +|+-+.
T Consensus 342 ~~GD~v~v~~G~~iP~Dg~v~~-g~~~vdeS~lTGEs~pv~k~~gd~V~----aGt~~~ 395 (834)
T PRK10671 342 QPGMLLRLTTGDRVPVDGEITQ-GEAWLDEAMLTGEPIPQQKGEGDSVH----AGTVVQ 395 (834)
T ss_pred CCCCEEEEcCCCEeeeeEEEEE-ceEEEeehhhcCCCCCEecCCCCEEE----ecceec
Confidence 3344444333 23467788887 6666654 6999999999999884 666554
No 144
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=26.12 E-value=2.4e+02 Score=20.82 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=12.6
Q ss_pred eeecCCEEEecCCC---ceEEEEC
Q 044904 117 AFKEGDTVLLPNYG---GDHVKLG 137 (155)
Q Consensus 117 ~VKvGD~Vlf~~y~---G~evk~d 137 (155)
-|++||.+.....+ |..++++
T Consensus 12 kV~~Gd~i~Ve~l~~~~G~~i~l~ 35 (101)
T TIGR00061 12 KVEEGQTVRIEKLDAAPGDTVEFD 35 (101)
T ss_pred EEeCCCEEEEcccCCCCCCEEEEE
Confidence 46777777766532 5555554
No 145
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=25.88 E-value=63 Score=25.38 Aligned_cols=26 Identities=46% Similarity=0.666 Sum_probs=20.0
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|.|+++|++.. .+++||+|..-.
T Consensus 66 e~~G~v~~~G~~~~---------~~~~G~~V~~~~ 91 (309)
T cd05289 66 DVAGVVVAVGPGVT---------GFKVGDEVFGMT 91 (309)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEEcc
Confidence 35799999998642 468999998654
No 146
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=25.83 E-value=63 Score=25.76 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=17.7
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|.. .+++||+|+-.
T Consensus 63 e~~G~v~~vG~~-----------~~~~Gd~V~~~ 85 (320)
T cd08243 63 EAVGEVEEAPGG-----------TFTPGQRVATA 85 (320)
T ss_pred eeEEEEEEecCC-----------CCCCCCEEEEe
Confidence 357999999941 47899999854
No 147
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=25.67 E-value=67 Score=26.75 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=18.9
Q ss_pred eeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 95 NSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 95 ~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
..|+|+++|++.. +| .+++||+|+.
T Consensus 70 ~~G~v~~vG~~v~--~~-----~~~~Gd~V~~ 94 (350)
T cd08256 70 FVGRVVELGEGAE--ER-----GVKVGDRVIS 94 (350)
T ss_pred eeEEEEEeCCCcc--cC-----CCCCCCEEEE
Confidence 5799999998642 11 2689999985
No 148
>KOG3163 consensus Uncharacterized conserved protein related to ribosomal protein S8E [General function prediction only]
Probab=25.45 E-value=1e+02 Score=26.39 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=50.9
Q ss_pred cccCCCCCcchhhHhhhccceecCCeEEEEecC-CCCcccceEEecC--------CC-----CCceeeEEEEEcCCccCC
Q 044904 44 QHCPKGPNFCRESKAMAKRLIPTLNRVLVEKIV-PPSKTNAGILLPE--------KS-----SKLNSGKVIAVGPGARDK 109 (155)
Q Consensus 44 ~~~~~~~~~~~~~~~m~~~i~PLgDRVLVk~~e-~e~kT~gGIiLP~--------sa-----~k~~~G~VVAVG~G~~~~ 109 (155)
.+|+.+..|+|..-.+.+-|+|.+=|.==-..- .|-+ .-.-||- +. .-.+.|+|++|--+..
T Consensus 152 k~tFVg~~FTRkPpKyERfIRPm~lRfkkAhVthpEL~--~Tf~LpIigvKKNP~sp~yT~LGvitkGTviEvnVseL-- 227 (260)
T KOG3163|consen 152 KVTFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELK--VTFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNVSEL-- 227 (260)
T ss_pred eeeeecCCcccCCchHhhhhchhhhhhhhccccChhhc--eEEEeeeeEeccCCCCcceeecceeecceEEEEecccc--
Confidence 479999999999988888999998774211110 1111 1133332 21 1246789998876532
Q ss_pred CCceeeeeeecCCEEEecCCCc
Q 044904 110 EGNTIPVAFKEGDTVLLPNYGG 131 (155)
Q Consensus 110 ~G~~~P~~VKvGD~Vlf~~y~G 131 (155)
| -|..|-+|++.+|+-
T Consensus 228 -G-----lVt~~GkvvWGKyAQ 243 (260)
T KOG3163|consen 228 -G-----LVTQGGKVVWGKYAQ 243 (260)
T ss_pred -c-----eeccCceEEeeehhh
Confidence 3 588999999999985
No 149
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=25.24 E-value=61 Score=26.32 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=17.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++ .+++||+|+..
T Consensus 71 e~~G~V~~~G~~-----------~~~~Gd~V~~~ 93 (329)
T cd05288 71 GGVGEVVESRSP-----------DFKVGDLVSGF 93 (329)
T ss_pred ceEEEEEecCCC-----------CCCCCCEEecc
Confidence 367999999952 37899999864
No 150
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=25.04 E-value=3.1e+02 Score=22.59 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=7.7
Q ss_pred EecCCCCCceeeEEEEE
Q 044904 86 LLPEKSSKLNSGKVIAV 102 (155)
Q Consensus 86 iLP~sa~k~~~G~VVAV 102 (155)
.+|+-.+....|+|+++
T Consensus 6 ~~p~~~~~~~~g~~~~~ 22 (371)
T PRK14875 6 TMPKWGLSMTEGKVAGW 22 (371)
T ss_pred eCCCCCCCCceEEEEEE
Confidence 34444333345555544
No 151
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=24.79 E-value=1.3e+02 Score=21.79 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=13.4
Q ss_pred eeecCCEEEecCCC---ceEEEEC
Q 044904 117 AFKEGDTVLLPNYG---GDHVKLG 137 (155)
Q Consensus 117 ~VKvGD~Vlf~~y~---G~evk~d 137 (155)
-|.+||.+..+... |.+|+++
T Consensus 13 kV~~gd~i~v~~l~~~~G~~i~l~ 36 (96)
T PF00829_consen 13 KVEEGDVIDVERLDAEVGDKIELD 36 (96)
T ss_dssp EESSSEEEEEESTSSSTTSEEEET
T ss_pred EEeCCCEEEECCcCcCCCCEEEEE
Confidence 56777777776642 5666665
No 152
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=24.62 E-value=79 Score=22.26 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=16.1
Q ss_pred ecCCeEEEEecCCCCcccceEE
Q 044904 65 PTLNRVLVEKIVPPSKTNAGIL 86 (155)
Q Consensus 65 PLgDRVLVk~~e~e~kT~gGIi 86 (155)
=-||+|||+..+..+.++|=|+
T Consensus 40 ~~GD~VlV~~~~~~~~~kg~Iv 61 (78)
T cd04456 40 KRGDFLIVDPIEEGEDVKADII 61 (78)
T ss_pred cCCCEEEEEecccCCCceEEEE
Confidence 5699999998875456666554
No 153
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=23.92 E-value=70 Score=26.04 Aligned_cols=21 Identities=19% Similarity=-0.105 Sum_probs=16.3
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
...|+|+++|++ .++||+|..
T Consensus 57 e~~G~Vv~~G~~------------~~~G~~V~~ 77 (319)
T cd08242 57 EFVGIVEEGPEA------------ELVGKRVVG 77 (319)
T ss_pred eEEEEEEEeCCC------------CCCCCeEEE
Confidence 367999999974 258888863
No 154
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=23.65 E-value=1.2e+02 Score=27.84 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=26.2
Q ss_pred ceeeEEEEEcCCccCC---CCceeeeeeecCCEEEecCCCceEEE
Q 044904 94 LNSGKVIAVGPGARDK---EGNTIPVAFKEGDTVLLPNYGGDHVK 135 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~---~G~~~P~~VKvGD~Vlf~~y~G~evk 135 (155)
|.-|.|++ |....++ +||-.|...++||.| |+|+.+.
T Consensus 88 P~Dg~ii~-g~~~vdes~lTGEs~pv~k~~g~~v----~aGt~v~ 127 (536)
T TIGR01512 88 PVDGVVLS-GTSTVDESALTGESVPVEKAPGDEV----FAGAINL 127 (536)
T ss_pred ecceEEEe-CcEEEEecccCCCCCcEEeCCCCEE----EeeeEEC
Confidence 45566665 4444443 699999999999987 5787664
No 155
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=23.61 E-value=76 Score=25.54 Aligned_cols=25 Identities=44% Similarity=0.694 Sum_probs=18.9
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|.|+++|+... .+++||+|+-.
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (336)
T cd08276 64 DGAGEVVAVGEGVT---------RFKVGDRVVPT 88 (336)
T ss_pred ceeEEEEEeCCCCc---------CCCCCCEEEEe
Confidence 35799999997543 36789998864
No 156
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=23.49 E-value=1.6e+02 Score=20.79 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=19.0
Q ss_pred CCceeeeeeecCCEEEecCCCceEEEECCEEEEEEecCc
Q 044904 110 EGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEE 148 (155)
Q Consensus 110 ~G~~~P~~VKvGD~Vlf~~y~G~evk~dg~ey~ivre~D 148 (155)
+|.-.-+.|+..|.-- .--|..|.+||+.|.+-+..+
T Consensus 50 ~g~~~~L~v~~~d~~~--P~~gd~v~~dG~~y~V~~~~~ 86 (95)
T PF13856_consen 50 EGTQPTLYVFSSDYPK--PRRGDRVVIDGESYTVTRFQE 86 (95)
T ss_dssp ----EEEEE--SS-------TT-EEEETTEEEEEEEEEE
T ss_pred cCCceEEEEEcCCCCC--CCCCCEEEECCeEEEEeEEec
Confidence 3444556777777332 556788899999999876543
No 157
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=23.22 E-value=1.6e+02 Score=24.45 Aligned_cols=53 Identities=26% Similarity=0.258 Sum_probs=35.7
Q ss_pred ecCCeEEEEecCCCCcccceEEecCCCCCceeeEEEEEcCCccCC-------CCceeeeeeecCC
Q 044904 65 PTLNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGARDK-------EGNTIPVAFKEGD 122 (155)
Q Consensus 65 PLgDRVLVk~~e~e~kT~gGIiLP~sa~k~~~G~VVAVG~G~~~~-------~G~~~P~~VKvGD 122 (155)
--|.||=++..| ..+.+|++||.. -...| +..++..+..- .|+++|+++.+-|
T Consensus 66 ~~Gs~vrlRLle--~i~i~g~~IPkg--t~l~G-~~~~~~~Rl~i~I~SI~~~~~IipV~L~vYD 125 (200)
T PF12508_consen 66 VDGSRVRLRLLE--DIQIGGILIPKG--TYLYG-VASFQGQRLLITITSIEYGGNIIPVELSVYD 125 (200)
T ss_pred eCCCEEEEEEcC--ceEECCEEeCCC--CEEEE-EEeeeccEEEEEEEEEEECCEEEEEEEEEEC
Confidence 457788888874 567799999987 35677 77888776531 4555555555444
No 158
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=23.15 E-value=2.5e+02 Score=19.04 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=24.7
Q ss_pred hhhccceecCCeEEEEecCC--CCcccceEEecCC---CCCceeeEEEEEc
Q 044904 58 AMAKRLIPTLNRVLVEKIVP--PSKTNAGILLPEK---SSKLNSGKVIAVG 103 (155)
Q Consensus 58 ~m~~~i~PLgDRVLVk~~e~--e~kT~gGIiLP~s---a~k~~~G~VVAVG 103 (155)
+|.-.|++ ||.|||.+... .....|.+++=.. ........|++..
T Consensus 7 SM~P~l~~-GD~vlv~~~~~~~~~~~~Gdivv~~~~~~~~~~~vkRv~~~~ 56 (90)
T TIGR02754 7 SMSPTLPP-GDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRLAAVD 56 (90)
T ss_pred CccCccCC-CCEEEEEEccccCCCCCCCeEEEEecCCCCcceEEEEeeEEc
Confidence 45444544 89999997432 2223466765332 2345566666654
No 159
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=22.96 E-value=76 Score=26.39 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=19.4
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~ 127 (155)
...|+|+++|++... .+++||+|+-.
T Consensus 65 e~~G~V~~vG~~v~~--------~~~~Gd~V~~~ 90 (352)
T cd08247 65 DYSGVIVKVGSNVAS--------EWKVGDEVCGI 90 (352)
T ss_pred eeEEEEEEeCccccc--------CCCCCCEEEEe
Confidence 468999999986520 36899999853
No 160
>PRK02268 hypothetical protein; Provisional
Probab=22.75 E-value=41 Score=26.56 Aligned_cols=16 Identities=31% Similarity=0.709 Sum_probs=11.6
Q ss_pred Cceeee-eeecCCEEEe
Q 044904 111 GNTIPV-AFKEGDTVLL 126 (155)
Q Consensus 111 G~~~P~-~VKvGD~Vlf 126 (155)
|+..|+ -+|+||.|+|
T Consensus 28 gK~apl~RmkpGD~ivy 44 (141)
T PRK02268 28 GKAAPLRRMKPGDWIIY 44 (141)
T ss_pred CccchhhcCCCCCEEEE
Confidence 334455 4899999997
No 161
>CHL00075 rpl21 ribosomal protein L21
Probab=22.71 E-value=2.3e+02 Score=21.30 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=11.4
Q ss_pred eeecCCEEEecCC---CceEEEEC
Q 044904 117 AFKEGDTVLLPNY---GGDHVKLG 137 (155)
Q Consensus 117 ~VKvGD~Vlf~~y---~G~evk~d 137 (155)
-|+.||.+...+. .|.+|+++
T Consensus 15 kV~~Gd~i~vekl~~~~G~~i~l~ 38 (108)
T CHL00075 15 WVEPGRFYDINHFPLEPGTKILLN 38 (108)
T ss_pred EEeCCCEEEEEEcCCCCCCEEEEE
Confidence 4666666665542 35555554
No 162
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.68 E-value=51 Score=23.61 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.7
Q ss_pred eeeecCCEEEecCCC
Q 044904 116 VAFKEGDTVLLPNYG 130 (155)
Q Consensus 116 ~~VKvGD~Vlf~~y~ 130 (155)
+.||.||.|++.+-.
T Consensus 4 L~Vk~Gd~ViV~~~~ 18 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQ 18 (75)
T ss_pred cccCCCCEEEEecCc
Confidence 369999999998865
No 163
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=22.61 E-value=78 Score=24.41 Aligned_cols=34 Identities=15% Similarity=0.439 Sum_probs=22.7
Q ss_pred eeeecCCEEEecC------CCceEEEECCEEEEEEecCceE
Q 044904 116 VAFKEGDTVLLPN------YGGDHVKLGEKDYHLYRDEEIL 150 (155)
Q Consensus 116 ~~VKvGD~Vlf~~------y~G~evk~dg~ey~ivre~DIL 150 (155)
+.+|+|++++.+. -.-+.+.+.+. --|++++|||
T Consensus 3 l~LkpgERi~INGAVi~N~drr~~l~i~n~-a~~Lre~dil 42 (126)
T PF07378_consen 3 LSLKPGERIIINGAVIRNGDRRSTLEIEND-APFLREKDIL 42 (126)
T ss_pred eeecCCCEEEEcCeEEEeCCCceEEEEecC-CceechhccC
Confidence 4678888888754 11245556555 6778888886
No 164
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=22.48 E-value=53 Score=27.30 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=16.4
Q ss_pred EEcCCccCCCCceeee-eeecCCEEEecCC
Q 044904 101 AVGPGARDKEGNTIPV-AFKEGDTVLLPNY 129 (155)
Q Consensus 101 AVG~G~~~~~G~~~P~-~VKvGD~Vlf~~y 129 (155)
|-|.-....||...+. +|++||.|+=.+-
T Consensus 3 ~~gT~vlmaDG~~k~ie~i~~Gd~vmg~dg 32 (215)
T PF05203_consen 3 AKGTRVLMADGSIKPIEDIKIGDQVMGPDG 32 (215)
T ss_dssp ETT-EEEBTTS-EEEGGG--TT-EEEBTTS
T ss_pred CCCCEEEecCCCeeEEeecccCCEEECCCC
Confidence 3355555678888887 5999999985543
No 165
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=22.20 E-value=1.2e+02 Score=19.59 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=8.1
Q ss_pred ecCCeEEEEecC
Q 044904 65 PTLNRVLVEKIV 76 (155)
Q Consensus 65 PLgDRVLVk~~e 76 (155)
--+|+|+|+...
T Consensus 33 ~~gD~V~v~i~~ 44 (58)
T PF08206_consen 33 MDGDKVLVRITP 44 (58)
T ss_dssp -TT-EEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 468999998875
No 166
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=22.13 E-value=1.1e+02 Score=20.40 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=11.1
Q ss_pred eeecCCEEEecCCC--ceEEEECCEE
Q 044904 117 AFKEGDTVLLPNYG--GDHVKLGEKD 140 (155)
Q Consensus 117 ~VKvGD~Vlf~~y~--G~evk~dg~e 140 (155)
.+++||.+-++... -.++..+|..
T Consensus 28 ~L~~Gdvi~l~~~~~~~v~l~v~g~~ 53 (77)
T PF01052_consen 28 NLKVGDVIPLDKPADEPVELRVNGQP 53 (77)
T ss_dssp C--TT-EEEECCESSTEEEEEETTEE
T ss_pred cCCCCCEEEeCCCCCCCEEEEECCEE
Confidence 45666666666653 3344445543
No 167
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=21.61 E-value=92 Score=23.34 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.7
Q ss_pred EEEECCEEEEEEecCce
Q 044904 133 HVKLGEKDYHLYRDEEI 149 (155)
Q Consensus 133 evk~dg~ey~ivre~DI 149 (155)
=+.++|++|+++|.+|-
T Consensus 61 Gi~l~G~KY~~l~~d~~ 77 (127)
T cd00148 61 GLTLGGQKYMVIRADDR 77 (127)
T ss_pred CEEECCeEEEEEecCcc
Confidence 38889999999998874
No 168
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=21.21 E-value=3.5e+02 Score=19.98 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=6.7
Q ss_pred eeecCCEEEecC
Q 044904 117 AFKEGDTVLLPN 128 (155)
Q Consensus 117 ~VKvGD~Vlf~~ 128 (155)
-|++||.+..+.
T Consensus 13 kV~~Gd~i~v~~ 24 (103)
T PRK05573 13 KVEEGDVIKVEK 24 (103)
T ss_pred EEeCCCEEEEcc
Confidence 455566555554
No 169
>COG1417 Uncharacterized conserved protein [Function unknown]
Probab=21.04 E-value=3.3e+02 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=20.4
Q ss_pred ceEEecCCCCCceeeEEEEEcCCccC
Q 044904 83 AGILLPEKSSKLNSGKVIAVGPGARD 108 (155)
Q Consensus 83 gGIiLP~sa~k~~~G~VVAVG~G~~~ 108 (155)
.-|++|-+-.....|.|++|+.|+..
T Consensus 96 nTVv~p~~~arna~G~vldVveg~Pr 121 (288)
T COG1417 96 NTVVVPLPYARNALGHVLDVVEGKPR 121 (288)
T ss_pred CcEEEEchhhcCcCccEEeeccCccc
Confidence 33888887566779999999998753
No 170
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=20.88 E-value=95 Score=24.44 Aligned_cols=26 Identities=42% Similarity=0.542 Sum_probs=19.4
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEecC
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPN 128 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf~~ 128 (155)
...|+|+.+|++.. ..++||+|+--.
T Consensus 64 e~~G~v~~~g~~~~---------~~~~G~~V~~~~ 89 (323)
T cd08241 64 EVAGVVEAVGEGVT---------GFKVGDRVVALT 89 (323)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEec
Confidence 35799999997642 368899998643
No 171
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=20.67 E-value=72 Score=20.90 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=9.6
Q ss_pred eeecCCEEEec
Q 044904 117 AFKEGDTVLLP 127 (155)
Q Consensus 117 ~VKvGD~Vlf~ 127 (155)
.+.+||.|.|.
T Consensus 40 ~~~vGD~V~~~ 50 (64)
T cd04451 40 RILPGDRVKVE 50 (64)
T ss_pred ccCCCCEEEEE
Confidence 47899999988
No 172
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=20.60 E-value=1.7e+02 Score=26.93 Aligned_cols=39 Identities=38% Similarity=0.595 Sum_probs=27.0
Q ss_pred ceeeEEEEEcCCccCC---CCceeeeeeecCCEEEecCCCceEEEEC
Q 044904 94 LNSGKVIAVGPGARDK---EGNTIPVAFKEGDTVLLPNYGGDHVKLG 137 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~---~G~~~P~~VKvGD~Vlf~~y~G~evk~d 137 (155)
|.-|.|++ |....++ +||-.|...+.||.| |+|+.+.-+
T Consensus 89 P~Dg~vi~-g~~~vdes~lTGEs~pv~k~~g~~v----~aGt~v~~g 130 (556)
T TIGR01525 89 PVDGVVIS-GESEVDESALTGESMPVEKKEGDEV----FAGTINGDG 130 (556)
T ss_pred ccceEEEe-cceEEeehhccCCCCCEecCCcCEE----eeceEECCc
Confidence 55666665 4444443 699999999999986 478777533
No 173
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=20.52 E-value=88 Score=22.58 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=14.3
Q ss_pred eEEEECCEEEEEEecCc
Q 044904 132 DHVKLGEKDYHLYRDEE 148 (155)
Q Consensus 132 ~evk~dg~ey~ivre~D 148 (155)
.-|.++|++|.++|.+|
T Consensus 59 ~gi~l~G~kY~~~~~d~ 75 (121)
T PF00235_consen 59 NGITLGGKKYIVLRADD 75 (121)
T ss_dssp H-EEETTEEEEEEEEET
T ss_pred CCeEEcCcEeEEEecCC
Confidence 45899999999999876
No 174
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.40 E-value=2.2e+02 Score=20.22 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=10.5
Q ss_pred eeecCCEEEecC-CCceEEEECC
Q 044904 117 AFKEGDTVLLPN-YGGDHVKLGE 138 (155)
Q Consensus 117 ~VKvGD~Vlf~~-y~G~evk~dg 138 (155)
.+++||.|+... .-|+=+++++
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d 59 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAE 59 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeC
Confidence 355666665544 3344444443
No 175
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=20.25 E-value=93 Score=26.37 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=20.6
Q ss_pred ceeeEEEEEcCCccC-CC---Cc------eeeeeeecCCEEEec
Q 044904 94 LNSGKVIAVGPGARD-KE---GN------TIPVAFKEGDTVLLP 127 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~-~~---G~------~~P~~VKvGD~Vlf~ 127 (155)
..+|+||.|..+... +. ++ -.+..||+||.|...
T Consensus 41 tiEGrVvEV~~~~i~iesk~yn~~v~i~~d~~~nvKVGD~VKaT 84 (213)
T PRK06763 41 TIEGRVVEVDNGVIVIKSKQYEEPVSVYIDSLSNVKVGDEVKAT 84 (213)
T ss_pred eeeeEEEEEeCCEEEEEeccCCCceEEEecCCCCcccCcEEEEc
Confidence 578888888887321 00 00 012258999999764
No 176
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=20.18 E-value=81 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=16.4
Q ss_pred ceeeEEEEEcCCccCCCCceeeeeeecCCEEEe
Q 044904 94 LNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLL 126 (155)
Q Consensus 94 ~~~G~VVAVG~G~~~~~G~~~P~~VKvGD~Vlf 126 (155)
-..|+|+++|+ .+++||+|+.
T Consensus 64 ~~~g~v~~~~~------------~~~~GdrV~~ 84 (325)
T TIGR02825 64 QVARVVESKNV------------ALPKGTIVLA 84 (325)
T ss_pred eEEEEEEeCCC------------CCCCCCEEEE
Confidence 35789998774 3689999986
No 177
>PF12852 Cupin_6: Cupin
Probab=20.14 E-value=77 Score=24.45 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=15.5
Q ss_pred CCceeeeeeecCCEEEecCCCc
Q 044904 110 EGNTIPVAFKEGDTVLLPNYGG 131 (155)
Q Consensus 110 ~G~~~P~~VKvGD~Vlf~~y~G 131 (155)
+|...|..+..||.|+++.=..
T Consensus 51 ~~~~~~~~L~~GDivllp~g~~ 72 (186)
T PF12852_consen 51 PGGGEPIRLEAGDIVLLPRGTA 72 (186)
T ss_pred cCCCCeEEecCCCEEEEcCCCC
Confidence 3433677889999999887443
No 178
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=20.12 E-value=1.6e+02 Score=21.71 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=13.8
Q ss_pred eeeecCCEEEecCCCce
Q 044904 116 VAFKEGDTVLLPNYGGD 132 (155)
Q Consensus 116 ~~VKvGD~Vlf~~y~G~ 132 (155)
+-++.||.|+.+.|+-+
T Consensus 56 iwI~~GD~VlVsp~d~~ 72 (99)
T TIGR00523 56 IWIREGDVVIVKPWEFQ 72 (99)
T ss_pred EEecCCCEEEEEEccCC
Confidence 35899999999877754
No 179
>PRK10689 transcription-repair coupling factor; Provisional
Probab=20.02 E-value=1.3e+02 Score=31.11 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=23.6
Q ss_pred eeecCCEEEecCCC-----c-eEEEECC--EEEEEEecC
Q 044904 117 AFKEGDTVLLPNYG-----G-DHVKLGE--KDYHLYRDE 147 (155)
Q Consensus 117 ~VKvGD~Vlf~~y~-----G-~evk~dg--~ey~ivre~ 147 (155)
++++||.|++.+|+ | ..++.+| .+|+.+.-.
T Consensus 476 ~l~~Gd~VVh~~~Gig~~~gi~~~~~~g~~~~~~~l~y~ 514 (1147)
T PRK10689 476 ELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA 514 (1147)
T ss_pred hCCCCCEEEecCCCeEEEeeEEEEecCCcceeEEEEEEC
Confidence 79999999999988 3 3445565 788887754
Done!