BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044905
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 31/176 (17%)
Query: 6 TVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARLAASYKILSKEELKRLNAV 65
++ V GATGQ G + Q LL++ VP A ++ + + + S + +
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKK-------VP----ASQIIAIVRNVEKASTLADQGVEVR 50
Query: 66 ESNFDSAESIAKAIGNAGKVVVTIGPTEDGPTSEVSTSDAFQVIQAAQLAGVGHVAIIYD 125
+++ ES+ KA K++ GP D V ++ V++AA+ AGV H+A Y
Sbjct: 51 HGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGVKHIA--YT 105
Query: 126 GNTTAASTYNVLDGISSFFNNLFSRNQPLTVPEFLQKVIETDVSYTFIKTSLTEDF 181
G A + L + E+ + T++ YTF++ +L DF
Sbjct: 106 GYAFAEESIIPLAHVH-------------LATEY--AIRTTNIPYTFLRNALYTDF 146
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 31/176 (17%)
Query: 6 TVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARLAASYKILSKEELKRLNAV 65
++ V GATGQ G + Q LL++ VP A ++ + + + S + +
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKK-------VP----ASQIIAIVRNVEKASTLADQGVEVR 50
Query: 66 ESNFDSAESIAKAIGNAGKVVVTIGPTEDGPTSEVSTSDAFQVIQAAQLAGVGHVAIIYD 125
+++ ES+ KA K++ GP D V ++ V++AA+ AGV H+A Y
Sbjct: 51 HGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGVKHIA--YT 105
Query: 126 GNTTAASTYNVLDGISSFFNNLFSRNQPLTVPEFLQKVIETDVSYTFIKTSLTEDF 181
G A + L + E+ + T++ YTF++ +L DF
Sbjct: 106 GYAFAEESIIPLAHVH-------------LATEY--AIRTTNIPYTFLRNALYTDF 146
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 31/176 (17%)
Query: 6 TVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARLAASYKILSKEELKRLNAV 65
++ V GATGQ G + Q L A VP A ++ + + + S + +
Sbjct: 2 SIAVTGATGQLGGLVIQHL-------XAAVP----ASQIIAIVRNVEKASTLADQGVEVR 50
Query: 66 ESNFDSAESIAKAIGNAGKVVVTIGPTEDGPTSEVSTSDAFQVIQAAQLAGVGHVAIIYD 125
+++ ES+ KA K++ GP D V ++ V++AA+ AGV H+A Y
Sbjct: 51 HGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGVKHIA--YT 105
Query: 126 GNTTAASTYNVLDGISSFFNNLFSRNQPLTVPEFLQKVIETDVSYTFIKTSLTEDF 181
G A + L + E+ + T++ YTF++ +L DF
Sbjct: 106 GYAFAEESIIPLAHVH-------------LATEYATRT--TNIPYTFLRNALYTDF 146
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 31/176 (17%)
Query: 6 TVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARLAASYKILSKEELKRLNAV 65
++ V GATGQ G + Q L A VP A ++ + + + S + +
Sbjct: 2 SIAVTGATGQLGGLVIQHL-------XAAVP----ASQIIAIVRNVEKASTLADQGVEVR 50
Query: 66 ESNFDSAESIAKAIGNAGKVVVTIGPTEDGPTSEVSTSDAFQVIQAAQLAGVGHVAIIYD 125
+++ ES+ KA K++ GP D V ++ V++AA+ AGV H+A Y
Sbjct: 51 HGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGVKHIA--YT 105
Query: 126 GNTTAASTYNVLDGISSFFNNLFSRNQPLTVPEFLQKVIETDVSYTFIKTSLTEDF 181
G A + L + E+ + T++ YTF++ +L DF
Sbjct: 106 GYAFAEESIIPLAHVH-------------LATEYAIRT--TNIPYTFLRNALYTDF 146
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 4 SGTVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARL-----AASYKILSKEE 58
S TV V GA+G G + LL G++VRA V + +++ L A ++ L K +
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKAD 64
Query: 59 LKRLNAVESNFDSA 72
L A E +FD A
Sbjct: 65 L----ADEGSFDEA 74
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 7 VFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARLAASYKILSKEELKRLNAVE 66
+ V GATG+AG I R G V A V + A + RL A+ L KE L E
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD--RLGATVATLVKEPLV---LTE 57
Query: 67 SNFDSAESIAKAI 79
++ DS +++ A+
Sbjct: 58 ADLDSVDAVVDAL 70
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 2 KDSGTVFVAGATGQAGVRIAQTLLREG-----FSVRAGVPELGAAQELA 45
+ SGTV + G G G R+A+ L EG + R G PE A ELA
Sbjct: 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRG-PEAPGAAELA 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.125 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,228,227
Number of Sequences: 62578
Number of extensions: 306224
Number of successful extensions: 1047
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 28
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)