BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044905
(427 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8SKU2|TIC62_PEA Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
Length = 534
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 33/264 (12%)
Query: 2 KDSGTVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARLAASYKIL------- 54
KD VFVAGATG+ G R + L++ GF VRAGV AQ+ L S K L
Sbjct: 86 KDDNLVFVAGATGKVGSRTVRELIKLGFKVRAGV---RNAQKAGALVQSVKQLKLDGASG 142
Query: 55 SKEELKRLNAVESNFDSAESIAKAIGNAGKVVVTIGPTED------GPTSEVSTSDAFQV 108
E +++L VE + + A+ I A+GNA V+ IG +E GP + +
Sbjct: 143 GGEAVEKLEIVECDLEKADQIGSALGNASTVICAIGASEKEIFDITGP-CRIDYRATKNL 201
Query: 109 IQAAQLAGVGHVAIIYDGNTTAASTYNVLDGISSFFNNLFSRNQPLTVPEFLQKVIETDV 168
+ AA +A V H ++ + + + + I + F + + + + ++ + +
Sbjct: 202 VDAATVAKVNHFILV---TSLGTNKFGLPAAILNLFWGVLIWKR-----KAEEALLASGI 253
Query: 169 SYTFIKTSLTEDFSPESSY----NVVVSAEASVDANDYKVAKSQIASLVADVFSNTAVAE 224
YT ++ E P +Y NV +S E ++ +V+ Q+A L+A + N ++
Sbjct: 254 PYTIVRPGGME--RPTDAYKETHNVTLSTEDTLFGG--QVSNLQVAELMAIMAKNPDLSY 309
Query: 225 NKVVKVFTDPSAPARRVDELFSAI 248
K+V+V + +AP ++L + I
Sbjct: 310 CKIVEVIAETTAPLTPAEKLLTRI 333
>sp|Q8H0U5|TIC62_ARATH Protein TIC 62, chloroplastic OS=Arabidopsis thaliana GN=TIC62 PE=1
SV=1
Length = 641
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 28/319 (8%)
Query: 2 KDSGTVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARLAASYKILSKEE--- 58
K+ VFVAGATG+ G R + LL+ GF VRAGV A L + K+ + +E
Sbjct: 79 KEEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAGSLVQSVKEMKLQNTDEGTQ 138
Query: 59 -LKRLNAVESNFDSAESIAKAIGNAGKVVVTIGPTED------GPTSEVSTSDAFQVIQA 111
+++L VE + + +SI A+GNA ++ IG +E GP + ++ A
Sbjct: 139 PVEKLEIVECDLEKKDSIQPALGNASVIICCIGASEKEISDITGP-YRIDYLATKNLVDA 197
Query: 112 AQLAGVGHVAIIYDGNTTAASTYNVLDGISSFFNNLFSRNQPLTVPEFLQKVIETDVSYT 171
A A V + ++ + + + I + F + + + + +IE+ ++Y
Sbjct: 198 ATSAKVNNFILV---TSLGTNKFGFPAAILNLFWGVLCWKR-----KAEEALIESGLNYA 249
Query: 172 FIKTSLTEDFSPESSYNVVVSAEASVDANDY--KVAKSQIASLVADVFSNTAVAENKVVK 229
++ E P +Y + ++D + +V+ Q+A L+A + N ++ +K+V+
Sbjct: 250 IVRPGGME--RPTDAYKETHNLTLALDDTLFGGQVSNLQVAELLACMAKNPQLSFSKIVE 307
Query: 230 VFTDPSAPARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEAATKLEE 289
V + +AP +++L I + Y A KE + K A K +E
Sbjct: 308 VVAETTAPLTPIEKLLEKIPS---KRPYVPPPKASVATKEVKPVPTKPVTQEPTAPKEDE 364
Query: 290 EVKKLSEQEAKAASLAEEA 308
K E+ K L+ A
Sbjct: 365 APPK--EKNVKPRPLSPYA 381
>sp|Q8H124|Y2446_ARATH Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis
thaliana GN=At2g34460 PE=1 SV=1
Length = 280
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 33/252 (13%)
Query: 7 VFVAGATGQAGVRIAQTLLREGFSVRAGVPELGAAQELARLAASYKILSKEELKRLNAVE 66
VFVAGATGQ G RI + LL GF+V+AGV ++ A+ S+K ++ R + E
Sbjct: 49 VFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAK------TSFKDDPSLQIVRADVTE 102
Query: 67 SNFDSAESIAKAIGNAGKVVVT---IGPTEDGPTS-EVSTSDAFQVIQAAQLAGVGHVAI 122
+ +A+ IG+ + V+ P D T +V ++ A + GV +
Sbjct: 103 ----GPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVL 158
Query: 123 IYDGNTTAASTYNVLDGISSFFNNLFSRNQPLTVPEFLQ---KVIETDVSYTFIKTSLTE 179
+ A+ +L+ + F NLF LT+ LQ + ++ ++YT ++ +
Sbjct: 159 VSSILVNGAAMGQILNP-AYLFLNLFG----LTLVAKLQAEKYIKKSGINYTIVRPGGLK 213
Query: 180 DFSPESSYNVVVSAEASVDANDYKVAKSQIASLVADVFSNTAVAEN---KVVKVFTDPSA 236
+ P NVV+ E ++ Y+ + S+ LVA+V + E KVV++ A
Sbjct: 214 NDPPTG--NVVMEPEDTL----YEGSISR--DLVAEVAVEALLQEESSFKVVEIVARAEA 265
Query: 237 PARRVDELFSAI 248
P R +LF+++
Sbjct: 266 PKRSYKDLFASV 277
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
Length = 1786
Score = 40.0 bits (92), Expect = 0.039, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 17/163 (10%)
Query: 166 TDVSYT--FIKTSLTEDFSPESSYNVVVSAEASVDANDYKVAKSQIASLVADVFSNTAVA 223
TDV T +K +L E + V+AE ++ D + +Q +L+ + S TA +
Sbjct: 1586 TDVKVTADMVKEAL------EEAEKAQVAAEKAIKQADEDIQGTQ--NLLTSIESETAAS 1637
Query: 224 ENKVVKVFTDPSAPARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEA 283
E + S R V+EL A++ A Y E + + + E E
Sbjct: 1638 EETLFNASQRISELERNVEELKRKAAQNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEK 1697
Query: 284 ATKLEEEVKKLSEQEAKAASLAEEAQEKADVAGAPMDTLLSKA 326
K+E + K +E+ A A AE Q +A TLL++A
Sbjct: 1698 YKKVENLIAKKTEESADARRKAEMLQNEA-------KTLLAQA 1733
>sp|Q8YEB3|IF2_BRUME Translation initiation factor IF-2 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=infB PE=3 SV=2
Length = 959
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 238 ARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEAATKLEEE-VKKLSE 296
AR V+E ED RRA E A+ +AE+EAR+ AE AEA K EEE K++ +
Sbjct: 175 ARAVEEAKRRAEEDARRAKEHEESARRQAEEEARLKAE-----AEARRKAEEEAAKRMPQ 229
Query: 297 QEAKA 301
EA++
Sbjct: 230 PEARS 234
>sp|Q8FXT2|IF2_BRUSU Translation initiation factor IF-2 OS=Brucella suis biovar 1
(strain 1330) GN=infB PE=3 SV=1
Length = 959
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 238 ARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEAATKLEEE-VKKLSE 296
AR V+E ED RRA E A+ +AE+EAR+ AE AEA K EEE K++ +
Sbjct: 175 ARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAE-----AEARRKAEEEAAKRMPQ 229
Query: 297 QEAKA 301
EA++
Sbjct: 230 PEARS 234
>sp|A9M9Z4|IF2_BRUC2 Translation initiation factor IF-2 OS=Brucella canis (strain ATCC
23365 / NCTC 10854) GN=infB PE=3 SV=1
Length = 959
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 238 ARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEAATKLEEE-VKKLSE 296
AR V+E ED RRA E A+ +AE+EAR+ AE AEA K EEE K++ +
Sbjct: 175 ARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAE-----AEARRKAEEEAAKRMPQ 229
Query: 297 QEAKA 301
EA++
Sbjct: 230 PEARS 234
>sp|B0CK11|IF2_BRUSI Translation initiation factor IF-2 OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=infB PE=3 SV=1
Length = 959
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 238 ARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEAATKLEEE-VKKLSE 296
AR V+E ED RRA E A+ +AE+EAR+ AE AEA K EEE K++ +
Sbjct: 175 ARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAE-----AEARRKAEEEAAKRMPQ 229
Query: 297 QEAKA 301
EA++
Sbjct: 230 PEARS 234
>sp|Q57AA0|IF2_BRUAB Translation initiation factor IF-2 OS=Brucella abortus biovar 1
(strain 9-941) GN=infB PE=3 SV=1
Length = 959
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 238 ARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEAATKLEEE-VKKLSE 296
AR V+E ED RRA E A+ +AE+EAR+ AE AEA K EEE K++ +
Sbjct: 175 ARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAE-----AEARRKAEEEAAKRMPQ 229
Query: 297 QEAKA 301
EA++
Sbjct: 230 PEARS 234
>sp|Q2YQR7|IF2_BRUA2 Translation initiation factor IF-2 OS=Brucella abortus (strain
2308) GN=infB PE=3 SV=1
Length = 959
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 238 ARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEAATKLEEE-VKKLSE 296
AR V+E ED RRA E A+ +AE+EAR+ AE AEA K EEE K++ +
Sbjct: 175 ARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAE-----AEARRKAEEEAAKRMPQ 229
Query: 297 QEAKA 301
EA++
Sbjct: 230 PEARS 234
>sp|A5VTB2|IF2_BRUO2 Translation initiation factor IF-2 OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=infB PE=3 SV=2
Length = 959
Score = 35.4 bits (80), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 238 ARRVDELFSAIAEDGRRAAYAEALAKEKAEKEARIAAEKAREAAEAATKLEEE-VKKLSE 296
AR V+E ED RRA E A+ +AE+EAR+ AE AEA K EEE K++ +
Sbjct: 175 ARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAE-----AEARRKAEEEAAKRMPQ 229
Query: 297 QEAKA 301
EA++
Sbjct: 230 PEARS 234
>sp|P09790|IGA_NEIGO IgA-specific serine endopeptidase autotransporter OS=Neisseria
gonorrhoeae GN=iga PE=1 SV=1
Length = 1532
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 234 PSAPARRVDELF--SAIAEDGRR--AAYAEALAKEKAEKEARIAAEKAREAAEAATKLEE 289
PS A + +E A AE +R AA AE +A++K E+ R AAE AR+ EA E
Sbjct: 1018 PSPQANQAEEALRQQAKAEQVKRQQAAEAEKVARQKDEEAKRKAAEIARQQEEARKAAEL 1077
Query: 290 EVKKLSEQEAKAASLAEEAQEKA 312
K+ +E E KA LA + E+A
Sbjct: 1078 AAKQKAEAERKARELARQKAEEA 1100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.123 0.321
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,715,298
Number of Sequences: 539616
Number of extensions: 5092219
Number of successful extensions: 39246
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 1086
Number of HSP's that attempted gapping in prelim test: 33000
Number of HSP's gapped (non-prelim): 4823
length of query: 427
length of database: 191,569,459
effective HSP length: 120
effective length of query: 307
effective length of database: 126,815,539
effective search space: 38932370473
effective search space used: 38932370473
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)