Query 044908
Match_columns 275
No_of_seqs 223 out of 1504
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 1.8E-29 6.2E-34 196.2 10.1 105 7-112 2-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 1.4E-28 4.9E-33 191.1 9.5 104 7-112 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 9.3E-25 3.2E-29 169.6 9.8 97 122-218 4-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 6.3E-24 2.2E-28 164.9 9.9 97 122-218 4-108 (108)
5 2l2t_A Receptor tyrosine-prote 95.8 0.0019 6.5E-08 40.9 0.5 33 239-271 7-40 (44)
6 2jwa_A Receptor tyrosine-prote 95.7 0.0016 5.4E-08 41.3 -0.2 27 244-270 14-40 (44)
7 2ks1_B Epidermal growth factor 95.5 0.0046 1.6E-07 39.2 1.5 32 241-272 10-42 (44)
8 2k1k_A Ephrin type-A receptor 93.9 0.0074 2.5E-07 37.1 -0.7 28 239-266 8-36 (38)
9 1cd1_A CD1, MCD1D.1; immunolog 71.6 0.81 2.8E-05 40.7 0.0 11 57-67 92-102 (315)
10 1iij_A ERBB-2 receptor protein 70.0 0.21 7.2E-06 29.8 -2.8 6 245-250 11-16 (35)
11 2l34_A TYRO protein tyrosine k 63.1 0.77 2.6E-05 27.0 -1.3 25 242-266 7-31 (33)
12 1q55_A EP-cadherin, C-cadherin 58.8 2 6.9E-05 43.7 0.0 15 241-255 704-718 (880)
13 2lx0_A Membrane fusion protein 50.8 4.9 0.00017 22.4 0.7 24 248-271 9-32 (32)
14 2knc_B Integrin beta-3; transm 47.6 3.8 0.00013 29.0 -0.1 15 244-258 10-24 (79)
15 2l9u_A Receptor tyrosine-prote 47.4 11 0.00037 22.3 1.9 10 260-269 25-34 (40)
16 2llm_A Amyloid beta A4 protein 45.9 6.1 0.00021 24.4 0.0 9 242-250 17-25 (43)
17 1s7q_A H-2KB, H-2 class I hist 38.6 6.5 0.00022 35.3 0.0 10 58-67 93-102 (348)
18 2klu_A T-cell surface glycopro 38.0 11 0.00036 25.7 0.9 12 247-258 12-23 (70)
19 2k9j_B Integrin beta-3; transm 27.4 11 0.00038 23.2 -0.3 15 244-258 9-23 (43)
20 1afo_A Glycophorin A; integral 27.1 34 0.0012 20.6 1.8 12 244-255 12-23 (40)
21 1zza_A Stannin, AG8_1; helix, 24.9 6.7 0.00023 27.2 -1.8 11 256-266 29-39 (90)
22 3lb6_C IL-13, interleukin-13 r 22.6 18 0.00062 32.4 0.0 10 259-268 358-367 (380)
23 2kv5_A FST, putative uncharact 20.3 30 0.001 20.1 0.6 10 247-256 8-17 (33)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.96 E-value=1.8e-29 Score=196.17 Aligned_cols=105 Identities=25% Similarity=0.535 Sum_probs=94.2
Q ss_pred cccccccccccccccCCCchHHHHHHHHHHHhcccCCCC--CceeeecCCCCCCcEEEEEecCCCCCccchHHHHHHhhH
Q 044908 7 YNNLVYKNCSSQTLAGSNESHSKSLHSLFQELVPQSSKS--KFFKATAGDDPSAAVSGFFQCRGDLSNKDCFDCVNTLPD 84 (275)
Q Consensus 7 ~~~~~~~~C~~~~~~~~~s~y~~nl~~ll~~L~~~~~~~--~f~~~~~g~~~~~~vygl~~CrgD~s~~~C~~Cl~~a~~ 84 (275)
++.++++.|++ ++++++++|++||+.||++|+++++.. +|++...|..++++||||+|||+|+++++|+.||+.|..
T Consensus 2 ~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 3a2e_A 2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 67899999965 577899999999999999999887643 466666664667999999999999999999999999999
Q ss_pred HhhhcCcCCceeEEEeCceEEEEecCcc
Q 044908 85 LSNSLCNKAVAGRIQLHGCYFYYETDEF 112 (275)
Q Consensus 85 ~~~~~C~~~~~a~i~~d~C~lRYs~~~f 112 (275)
++.+.||++++|+||++.|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.95 E-value=1.4e-28 Score=191.13 Aligned_cols=104 Identities=24% Similarity=0.524 Sum_probs=95.2
Q ss_pred cccccccccccccccCCCchHHHHHHHHHHHhcccCCC--CCceeeecCCCCC-CcEEEEEecCCCCCccchHHHHHHhh
Q 044908 7 YNNLVYKNCSSQTLAGSNESHSKSLHSLFQELVPQSSK--SKFFKATAGDDPS-AAVSGFFQCRGDLSNKDCFDCVNTLP 83 (275)
Q Consensus 7 ~~~~~~~~C~~~~~~~~~s~y~~nl~~ll~~L~~~~~~--~~f~~~~~g~~~~-~~vygl~~CrgD~s~~~C~~Cl~~a~ 83 (275)
+++++++.|++ ++++++++|++||+.||+.|+++++. .+|+++++| ..| ++||||+|||+|+++++|+.||+.|.
T Consensus 2 ~t~~~~~~C~~-~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g-~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~ 79 (108)
T 2e79_A 2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAG-SGGAPTAYGRATCKQSISQSDCTACLSNLV 79 (108)
T ss_dssp CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECC-CTTCCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceeeeeeCCC-CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecC-CCCCCcEEEEEecCCCCChHHHHHHHHHHH
Confidence 67899999998 67889999999999999999988653 358888888 555 89999999999999999999999999
Q ss_pred HHhhhcCcCCceeEEEeCceEEEEecCcc
Q 044908 84 DLSNSLCNKAVAGRIQLHGCYFYYETDEF 112 (275)
Q Consensus 84 ~~~~~~C~~~~~a~i~~d~C~lRYs~~~f 112 (275)
.++.+.||++++|+||++.|+||||+++|
T Consensus 80 ~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 80 NRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp TTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999999987
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.91 E-value=9.3e-25 Score=169.55 Aligned_cols=97 Identities=19% Similarity=0.424 Sum_probs=83.4
Q ss_pred ceeeeecCCCCC--chhHHHHHHHHHHhhhcccC-CCCccccC-----CCCcEEEEEEcCCCCCcchhHHHHHHHHHHHH
Q 044908 122 DLIHKVCGQKAK--DSSFEGQRDKAFETMESGVI-DGKGFYSG-----DYESVHAMAQCEGDLIDCDCGECVSNAVQIAQ 193 (275)
Q Consensus 122 ~~~~~~c~~~~~--~~~F~~~~~~~~~~l~~~~~-~~~~f~~~-----~~~~vYgLaQCt~DLs~~dC~~CL~~a~~~i~ 193 (275)
..+++.|+..+. ++.|+++++.++..|.+.++ ++.+|++. +.++||||+||+|||++++|+.||+.++.+++
T Consensus 4 ~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~ 83 (108)
T 3a2e_A 4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF 83 (108)
T ss_dssp CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred ceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 356778987665 67899999999999977654 33345432 35799999999999999999999999999999
Q ss_pred hhCCCCcceEEEcceeEEEEecccC
Q 044908 194 EECVGSVSGQIYLDRCFISYSYFPH 218 (275)
Q Consensus 194 ~~C~~~~ggrv~~~~C~lRYe~~~F 218 (275)
++|++++||+||+++|+||||+|+|
T Consensus 84 ~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 84 SICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999998
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.90 E-value=6.3e-24 Score=164.87 Aligned_cols=97 Identities=19% Similarity=0.407 Sum_probs=83.2
Q ss_pred ceeeeecCCCCC--chhHHHHHHHHHHhhhcccCC-CCccccC-----CCCcEEEEEEcCCCCCcchhHHHHHHHHHHHH
Q 044908 122 DLIHKVCGQKAK--DSSFEGQRDKAFETMESGVID-GKGFYSG-----DYESVHAMAQCEGDLIDCDCGECVSNAVQIAQ 193 (275)
Q Consensus 122 ~~~~~~c~~~~~--~~~F~~~~~~~~~~l~~~~~~-~~~f~~~-----~~~~vYgLaQCt~DLs~~dC~~CL~~a~~~i~ 193 (275)
.++++.|+..+. ++.|+++++.++..|...++. +.+|+++ +.++||||+||+|||++++|+.||+.++.+++
T Consensus 4 ~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~~~ 83 (108)
T 2e79_A 4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF 83 (108)
T ss_dssp CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred eeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Confidence 467888987554 678999999999998776532 2356553 13789999999999999999999999999999
Q ss_pred hhCCCCcceEEEcceeEEEEecccC
Q 044908 194 EECVGSVSGQIYLDRCFISYSYFPH 218 (275)
Q Consensus 194 ~~C~~~~ggrv~~~~C~lRYe~~~F 218 (275)
++|++++||+||+++|+||||+++|
T Consensus 84 ~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 84 SICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HhCCCCceEEEECCCeEEEEeCCCC
Confidence 9999999999999999999999998
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=95.81 E-value=0.0019 Score=40.94 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=14.6
Q ss_pred CCCCcEEEEeehHHHHH-HHHHHHHHHHHhhCCC
Q 044908 239 SNTGKTVAIVLGGVAAL-ALGFIFLSFLRSCGDK 271 (275)
Q Consensus 239 ~~~~~iiaivv~~v~~v-~~~~~~~~~~r~~~~~ 271 (275)
+++..|.+.||+.++++ ++....++++|||+++
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34444555555544443 3333334444544433
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=95.72 E-value=0.0016 Score=41.26 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=13.3
Q ss_pred EEEEeehHHHHHHHHHHHHHHHHhhCC
Q 044908 244 TVAIVLGGVAALALGFIFLSFLRSCGD 270 (275)
Q Consensus 244 iiaivv~~v~~v~~~~~~~~~~r~~~~ 270 (275)
|+++||++++++++..+.++++|||+.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 566777754444333333444444443
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.53 E-value=0.0046 Score=39.23 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=13.6
Q ss_pred CCcEEEEeehHHHHH-HHHHHHHHHHHhhCCCC
Q 044908 241 TGKTVAIVLGGVAAL-ALGFIFLSFLRSCGDKD 272 (275)
Q Consensus 241 ~~~iiaivv~~v~~v-~~~~~~~~~~r~~~~~~ 272 (275)
+..|.+.||+.++++ ++++..++++|||++|+
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 333444455434433 33333444445544433
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=93.87 E-value=0.0074 Score=37.07 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=16.4
Q ss_pred CCCCcEEEEeehHHHHHHHHH-HHHHHHH
Q 044908 239 SNTGKTVAIVLGGVAALALGF-IFLSFLR 266 (275)
Q Consensus 239 ~~~~~iiaivv~~v~~v~~~~-~~~~~~r 266 (275)
-+.+.|..||+++++.+++++ +.++++|
T Consensus 8 ls~GaIAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 8 LTGGEIVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceeeeehHHHHHHHHHHHHHHHHee
Confidence 345567778888777664444 3344443
No 9
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=71.62 E-value=0.81 Score=40.71 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=7.4
Q ss_pred CCcEEEEEecC
Q 044908 57 SAAVSGFFQCR 67 (275)
Q Consensus 57 ~~~vygl~~Cr 67 (275)
+-......-|.
T Consensus 92 ~ht~Q~~~gCe 102 (315)
T 1cd1_A 92 PIEIQLSAGCE 102 (315)
T ss_dssp CEEEEEEEEEE
T ss_pred cEEEEEEEEEE
Confidence 45667777775
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=70.02 E-value=0.21 Score=29.84 Aligned_cols=6 Identities=50% Similarity=0.927 Sum_probs=2.6
Q ss_pred EEEeeh
Q 044908 245 VAIVLG 250 (275)
Q Consensus 245 iaivv~ 250 (275)
++.|++
T Consensus 11 aagVvg 16 (35)
T 1iij_A 11 IATVVG 16 (35)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 11
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=63.07 E-value=0.77 Score=27.01 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=13.8
Q ss_pred CcEEEEeehHHHHHHHHHHHHHHHH
Q 044908 242 GKTVAIVLGGVAALALGFIFLSFLR 266 (275)
Q Consensus 242 ~~iiaivv~~v~~v~~~~~~~~~~r 266 (275)
+.+..||++.+++++++.+.+++++
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEeEeHHHHHHHHHHHHHHhhee
Confidence 4456677776666655544444433
No 12
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=58.82 E-value=2 Score=43.71 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCcEEEEeehHHHHH
Q 044908 241 TGKTVAIVLGGVAAL 255 (275)
Q Consensus 241 ~~~iiaivv~~v~~v 255 (275)
.+.+|+|++++++++
T Consensus 704 ~~aii~il~~~~~ll 718 (880)
T 1q55_A 704 LPIILVILGSVLALL 718 (880)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444667766665544
No 13
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=50.77 E-value=4.9 Score=22.41 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=12.7
Q ss_pred eehHHHHHHHHHHHHHHHHhhCCC
Q 044908 248 VLGGVAALALGFIFLSFLRSCGDK 271 (275)
Q Consensus 248 vv~~v~~v~~~~~~~~~~r~~~~~ 271 (275)
+.+.|+.+-++.+.|++++-.+||
T Consensus 9 iaglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555555555666665554443
No 14
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=47.58 E-value=3.8 Score=28.95 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=7.6
Q ss_pred EEEEeehHHHHHHHH
Q 044908 244 TVAIVLGGVAALALG 258 (275)
Q Consensus 244 iiaivv~~v~~v~~~ 258 (275)
+++||+++++.++++
T Consensus 10 ~~~Iv~gvi~gilli 24 (79)
T 2knc_B 10 ILVVLLSVMGAILLI 24 (79)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHH
Confidence 345555655554333
No 15
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=47.41 E-value=11 Score=22.26 Aligned_cols=10 Identities=10% Similarity=-0.014 Sum_probs=5.6
Q ss_pred HHHHHHHhhC
Q 044908 260 IFLSFLRSCG 269 (275)
Q Consensus 260 ~~~~~~r~~~ 269 (275)
.-|++||-||
T Consensus 25 ~tflywrgrr 34 (40)
T 2l9u_A 25 GTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHH
T ss_pred ceeEEEcccc
Confidence 3456666554
No 16
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=45.87 E-value=6.1 Score=24.45 Aligned_cols=9 Identities=22% Similarity=0.815 Sum_probs=3.7
Q ss_pred CcEEEEeeh
Q 044908 242 GKTVAIVLG 250 (275)
Q Consensus 242 ~~iiaivv~ 250 (275)
+.++.+.++
T Consensus 17 ga~iGL~v~ 25 (43)
T 2llm_A 17 GAIIGLMVG 25 (43)
Confidence 334444433
No 17
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=38.63 E-value=6.5 Score=35.35 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=5.3
Q ss_pred CcEEEEEecC
Q 044908 58 AAVSGFFQCR 67 (275)
Q Consensus 58 ~~vygl~~Cr 67 (275)
-....+.-|.
T Consensus 93 ht~Q~~~GCe 102 (348)
T 1s7q_A 93 HTIQVISGCE 102 (348)
T ss_dssp CEEEEEEEEE
T ss_pred eeeEEEeEEE
Confidence 3455555564
No 18
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=38.01 E-value=11 Score=25.70 Aligned_cols=12 Identities=75% Similarity=0.902 Sum_probs=7.5
Q ss_pred EeehHHHHHHHH
Q 044908 247 IVLGGVAALALG 258 (275)
Q Consensus 247 ivv~~v~~v~~~ 258 (275)
||++.++.++++
T Consensus 12 ivlGg~~~lll~ 23 (70)
T 2klu_A 12 IVLGGVAGLLLF 23 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 677777665443
No 19
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=27.39 E-value=11 Score=23.25 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=7.8
Q ss_pred EEEEeehHHHHHHHH
Q 044908 244 TVAIVLGGVAALALG 258 (275)
Q Consensus 244 iiaivv~~v~~v~~~ 258 (275)
+.+|+.++++.++++
T Consensus 9 ~~~Iv~gvi~~ivli 23 (43)
T 2k9j_B 9 ILVVLLSVMGAILLI 23 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHH
Confidence 455665665554333
No 20
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.07 E-value=34 Score=20.62 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=6.3
Q ss_pred EEEEeehHHHHH
Q 044908 244 TVAIVLGGVAAL 255 (275)
Q Consensus 244 iiaivv~~v~~v 255 (275)
++.|+.++++.+
T Consensus 12 i~lII~~vmaGi 23 (40)
T 1afo_A 12 ITLIIFGVMAGV 23 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444555555544
No 21
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=24.86 E-value=6.7 Score=27.22 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 044908 256 ALGFIFLSFLR 266 (275)
Q Consensus 256 ~~~~~~~~~~r 266 (275)
+|+..|++++|
T Consensus 29 ~li~gcwcylr 39 (90)
T 1zza_A 29 ALILGCWCYLR 39 (90)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHHHHH
Confidence 44445555544
No 22
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=22.55 E-value=18 Score=32.39 Aligned_cols=10 Identities=10% Similarity=-0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHhh
Q 044908 259 FIFLSFLRSC 268 (275)
Q Consensus 259 ~~~~~~~r~~ 268 (275)
+.|+++.+||
T Consensus 358 ~~~~~~~k~~ 367 (380)
T 3lb6_C 358 VTGLLLRKPN 367 (380)
T ss_dssp ----------
T ss_pred HHHHHHhcch
Confidence 3444444443
No 23
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=20.34 E-value=30 Score=20.06 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.6
Q ss_pred EeehHHHHHH
Q 044908 247 IVLGGVAALA 256 (275)
Q Consensus 247 ivv~~v~~v~ 256 (275)
|+.|+++.++
T Consensus 8 IIaPivVGvv 17 (33)
T 2kv5_A 8 VIAPIFVGLV 17 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555443
Done!