Query 044908
Match_columns 275
No_of_seqs 223 out of 1504
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 13:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044908.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044908hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 20.4 35 0.0026 22.8 3.0 11 261-271 48-58 (100)
2 d1ep5a_ b.47.1.3 (A:) Viral ca 11.5 70 0.0051 22.9 2.7 47 200-251 77-125 (156)
3 d1wyka_ b.47.1.3 (A:) Viral ca 11.2 73 0.0053 22.7 2.7 39 208-251 81-121 (152)
4 d1vcpa_ b.47.1.3 (A:) Viral ca 10.4 80 0.0058 22.4 2.6 38 209-251 80-119 (149)
5 d1g25a_ g.44.1.1 (A:) TFIIH Ma 7.2 77 0.0056 19.0 1.2 20 73-92 29-48 (65)
6 d3d4ub1 g.9.1.3 (B:1-37) Carbo 6.5 48 0.0035 17.7 -0.1 25 77-103 2-27 (37)
7 d1cl4a_ g.40.1.1 (A:) Nucleoca 6.0 28 0.002 18.6 -1.3 18 86-103 1-18 (32)
8 d1f32a_ d.62.1.1 (A:) Pepsin i 5.1 2E+02 0.014 20.5 2.6 20 87-106 62-81 (147)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 5.1 2.2E+02 0.016 13.9 2.4 27 247-274 1-27 (27)
10 d1rmda2 g.44.1.1 (A:1-86) V(D) 4.6 1.5E+02 0.011 19.0 1.5 17 75-91 46-62 (86)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=20.38 E-value=35 Score=22.81 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=4.7
Q ss_pred HHHHHHhhCCC
Q 044908 261 FLSFLRSCGDK 271 (275)
Q Consensus 261 ~~~~~r~~~~~ 271 (275)
.++.+|.|+||
T Consensus 48 ~~~~~~~r~~~ 58 (100)
T d3dtub2 48 LYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHBTTT
T ss_pred HHHhhhhhccC
Confidence 34444444443
No 2
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}
Probab=11.54 E-value=70 Score=22.93 Aligned_cols=47 Identities=28% Similarity=0.302 Sum_probs=24.8
Q ss_pred cceEEEcceeEEEEecccCCCCCCCCCCCCCCCCCCCC--CCCCCcEEEEeehH
Q 044908 200 VSGQIYLDRCFISYSYFPHGSGPSGASGNSDNKKSSGG--DSNTGKTVAIVLGG 251 (275)
Q Consensus 200 ~ggrv~~~~C~lRYe~~~F~~~~~~~~p~~~~~~~~~~--~~~~~~iiaivv~~ 251 (275)
..|..---.=.++|+.-.|-.|...-.|. .+++ -.+++++++||++.
T Consensus 77 peg~YNwhhGavq~~~grftip~g~g~~G-----DSGRpi~DN~GkVVaIVLGG 125 (156)
T d1ep5a_ 77 PQGYYSWHHGAVQYENGRFTVPKGVGAKG-----DSGRPILDNQGRVVAIVLGG 125 (156)
T ss_dssp CSEEEEETTEEEEEETTEEEEETTCCCTT-----CTTCEEECTTSCEEEEEEEE
T ss_pred CCceeccccceEEEeCCeEEeccCCCCCC-----CCCCccCcCCCcEEEEEecC
Confidence 33433333345788888884443221111 0111 14688899999864
No 3
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}
Probab=11.25 E-value=73 Score=22.69 Aligned_cols=39 Identities=33% Similarity=0.362 Sum_probs=21.8
Q ss_pred eeEEEEecccCCCCCCCCCCCCCCCCCCCC--CCCCCcEEEEeehH
Q 044908 208 RCFISYSYFPHGSGPSGASGNSDNKKSSGG--DSNTGKTVAIVLGG 251 (275)
Q Consensus 208 ~C~lRYe~~~F~~~~~~~~p~~~~~~~~~~--~~~~~~iiaivv~~ 251 (275)
.=.++|++-.|-.|...-.|. .+++ -.+++++++||++.
T Consensus 81 hGavq~~~grftip~g~g~~G-----DSGRpi~DN~GrVVaIVLGG 121 (152)
T d1wyka_ 81 HGAVQYSGGRFTIPRGVGGRG-----DSGRPIMDNSGRVVAIVLGG 121 (152)
T ss_dssp TEEEEEETTEEEEETTTCCTT-----CTTCEEECTTSCEEEEEEEE
T ss_pred cceEEEeCCeEEecccCCCCC-----CCCCccCcCCCcEEEEEecC
Confidence 345788888884432221111 0111 14688899999864
No 4
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}
Probab=10.39 E-value=80 Score=22.44 Aligned_cols=38 Identities=34% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEEEecccCCCCCCCCCCCCCCCCCCCC--CCCCCcEEEEeehH
Q 044908 209 CFISYSYFPHGSGPSGASGNSDNKKSSGG--DSNTGKTVAIVLGG 251 (275)
Q Consensus 209 C~lRYe~~~F~~~~~~~~p~~~~~~~~~~--~~~~~~iiaivv~~ 251 (275)
=.++||.-.|-.|...-.|. .+++ -.+++++++||++.
T Consensus 80 Gavq~~~grft~p~g~g~~G-----DSGRpi~DN~GkVVaIVLGG 119 (149)
T d1vcpa_ 80 GAVQYSGGRFTIPTGAGKPG-----DSGRPIFDNKGRVVAIVLGG 119 (149)
T ss_dssp EEEEEETTEEEEETTSCCTT-----CTTCEEECTTSCEEEEEEEE
T ss_pred ceEEEeCCeEEeccccCCCC-----CCCCccCcCCCCEEEEEecC
Confidence 45788888884432211111 0111 15688999999864
No 5
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.16 E-value=77 Score=19.01 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.4
Q ss_pred cchHHHHHHhhHHhhhcCcC
Q 044908 73 KDCFDCVNTLPDLSNSLCNK 92 (275)
Q Consensus 73 ~~C~~Cl~~a~~~~~~~C~~ 92 (275)
.-|..|+......-...||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 57999999988766667996
No 6
>d3d4ub1 g.9.1.3 (B:1-37) Carboxypeptidase inhibitor {Tick (Rhipicephalus bursa) [TaxId: 67831]}
Probab=6.48 E-value=48 Score=17.73 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=15.6
Q ss_pred HHHHHhhHHhh-hcCcCCceeEEEeCce
Q 044908 77 DCVNTLPDLSN-SLCNKAVAGRIQLHGC 103 (275)
Q Consensus 77 ~Cl~~a~~~~~-~~C~~~~~a~i~~d~C 103 (275)
+|++..+.-++ ..||. ++++-|.+|
T Consensus 2 ~cvs~gfgc~p~s~cp~--e~rlsy~gc 27 (37)
T d3d4ub1 2 ECVSKGFGCLPQSDCPQ--EARLSYGGC 27 (37)
T ss_dssp HHHHTTCEEECGGGSCG--GGEECCSCC
T ss_pred cccccCcCcCccccCCH--hHeeccCCc
Confidence 46665555444 36885 677777776
No 7
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=6.03 E-value=28 Score=18.63 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=0.0
Q ss_pred hhhcCcCCceeEEEeCce
Q 044908 86 SNSLCNKAVAGRIQLHGC 103 (275)
Q Consensus 86 ~~~~C~~~~~a~i~~d~C 103 (275)
++..||.=+.++.|-.+|
T Consensus 1 ~P~lCPrC~kG~HWa~~C 18 (32)
T d1cl4a_ 1 VPGLCPRCKRGKHWANEC 18 (32)
T ss_dssp CCCSCSSCSSCSSCSTTC
T ss_pred CCccCccccCcchHHHHh
No 8
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=5.13 E-value=2e+02 Score=20.46 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=0.0
Q ss_pred hhcCcCCceeEEEeCceEEE
Q 044908 87 NSLCNKAVAGRIQLHGCYFY 106 (275)
Q Consensus 87 ~~~C~~~~~a~i~~d~C~lR 106 (275)
+.-|...-.-..+.|+||++
T Consensus 62 PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 62 PPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCcCcceEEEEeeeEEE
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.12 E-value=2.2e+02 Score=13.90 Aligned_cols=27 Identities=30% Similarity=0.408 Sum_probs=0.0
Q ss_pred EeehHHHHHHHHHHHHHHHHhhCCCCCC
Q 044908 247 IVLGGVAALALGFIFLSFLRSCGDKDSI 274 (275)
Q Consensus 247 ivv~~v~~v~~~~~~~~~~r~~~~~~~~ 274 (275)
||++.+++. +..+++.-+..-|++...
T Consensus 1 ivlgli~~t-l~glf~aayqqykrpnel 27 (27)
T d2e74g1 1 LVLGLVFAT-LGGLFYAAYQQYKRPNEL 27 (27)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHTTSCCCT
T ss_pred CeeeehHHH-HHHHHHHHHHHhcCCCCC
No 10
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.64 E-value=1.5e+02 Score=18.97 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHhhhcCc
Q 044908 75 CFDCVNTLPDLSNSLCN 91 (275)
Q Consensus 75 C~~Cl~~a~~~~~~~C~ 91 (275)
|+.|+....+.-...||
T Consensus 46 C~~Ci~~~~~~~~~~CP 62 (86)
T d1rmda2 46 CRICILRCLKVMGSYCP 62 (86)
T ss_dssp EHHHHHHHHHHTCSBCT
T ss_pred hHHHHHHHHhhCCCcCc
Done!