BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044913
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%)
Query: 60 NEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLN 119
N K + + LQ G GK+ P ++ L L+L +N L G IP + +L++L DL L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 120 VNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANX 179
+N L G+IP E+ Y+ +L+ L L +N LTG IP+ L + L+ ++L +N+LTG IP
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 180 XXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKR 229
S N G+IP +L D L LD+ N +G++P A+ +
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 86 LKHLTGLYLHYNSLYGQIPREIANLT---------------------------ELSDLYL 118
++ L L L +N G++P + NL+ L +LYL
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 119 NVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPAN 178
N +G IPP + L L L +N L+G+IP+ LGSL KL L L N L G IP
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 179 XXXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRL 230
FN L G IP L++ L + + NN L+G +P + RL
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 54 FEGIACNEKGQVAN---ISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANL 110
F+GI + +++ ++ + G SP + L + YN L G IP+EI ++
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 111 TELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQ 170
L L L N++SG IP E+G + L +L L N+L G IP + +L L+ + L +N
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 171 LTGAIP 176
L+G IP
Sbjct: 713 LSGPIP 718
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 24/109 (22%)
Query: 116 LYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAI 175
L ++ N LSG IP EIG M L +L L +N ++GSIP ++G LR L++L L SN+L G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 176 PANXXXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVP 224
P + ++ +L +D+ NN LSG +P
Sbjct: 694 P------------------------QAMSALTMLTEIDLSNNNLSGPIP 718
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 32/218 (14%)
Query: 68 ISLQGKGLNGKVSPAIAG-LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGD 126
+SL G++ ++G LTGL L N YG +P + + L L L+ NN SG+
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 127 IPPE-IGYMGSLQVLQLCYNQLTGSIPTQLGSL--------------------------- 158
+P + + M L+VL L +N+ +G +P L +L
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 159 RKLSVLALQSNQLTGAIPANXXXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNT 218
L L LQ+N TG IP SFN+L G+IP L L L + N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 219 LSGSVPPALKRLN--EGFLYENNLELCGVGFSALKTCS 254
L G +P L + E + + N +L G S L C+
Sbjct: 451 LEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCT 487
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 22 ELRALMDMKAALDPEERYLSSWTINGDPCDGSFEGIACNEKGQVANISLQGKGLN----- 76
E+ L+ K L P++ L W+ N +PC +F+G+ C + +V +I L K LN
Sbjct: 10 EIHQLISFKDVL-PDKNLLPDWSSNKNPC--TFDGVTCRDD-KVTSIDLSSKPLNVGFSA 65
Query: 77 ------------------GKVSPAIAGLK---HLTGLYLHYNSLYGQIPREIANLTELSD 115
++ +++G K LT L L NSL G + + +L S
Sbjct: 66 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV-TTLTSLGSCSG 124
Query: 116 L-YLNVNNLSGDIPPEIG---YMGSLQVLQLCYNQLTGS------IPTQLGSLRKLSVLA 165
L +LNV++ + D P ++ + SL+VL L N ++G+ + G L+ L A
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL---A 181
Query: 166 LQSNQLTGAIPANXXXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPP 225
+ N+++G + + S N+ IP L D L+ LDI N LSG
Sbjct: 182 ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 238
Query: 226 ALKRLNE 232
A+ E
Sbjct: 239 AISTCTE 245
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 125 GDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANXXXXXX 184
G P GS+ L + YN L+G IP ++GS+ L +L L N ++G
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG----------- 667
Query: 185 XXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVP---PALKRLNEGFLYENNL 240
SIP ++ D L +LD+ +N L G +P AL L E L NNL
Sbjct: 668 -------------SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 69 SLQGKGLNGKV-SPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDI 127
S+ G + G V S LKHL + N + G + +++ L L ++ NN S I
Sbjct: 159 SISGANVVGWVLSDGCGELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 213
Query: 128 PPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANXXXXXXXXX 187
P +G +LQ L + N+L+G + + +L +L + SNQ G IP
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 270
Query: 188 XXXSFNHLFGSIPRKLADA-PLLEVLDIRNNTLSGSVPP 225
+ N G IP L+ A L LD+ N G+VPP
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%)
Query: 60 NEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLN 119
N K + + LQ G GK+ P ++ L L+L +N L G IP + +L++L DL L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 120 VNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANX 179
+N L G+IP E+ Y+ +L+ L L +N LTG IP+ L + L+ ++L +N+LTG IP
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 180 XXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKR 229
S N G+IP +L D L LD+ N +G++P A+ +
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 86 LKHLTGLYLHYNSLYGQIPREIANLT---------------------------ELSDLYL 118
++ L L L +N G++P + NL+ L +LYL
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 119 NVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPAN 178
N +G IPP + L L L +N L+G+IP+ LGSL KL L L N L G IP
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 179 XXXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRL 230
FN L G IP L++ L + + NN L+G +P + RL
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 54 FEGIACNEKGQVAN---ISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANL 110
F+GI + +++ ++ + G SP + L + YN L G IP+EI ++
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 111 TELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQ 170
L L L N++SG IP E+G + L +L L N+L G IP + +L L+ + L +N
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 171 LTGAIP 176
L+G IP
Sbjct: 716 LSGPIP 721
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 24/109 (22%)
Query: 116 LYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAI 175
L ++ N LSG IP EIG M L +L L +N ++GSIP ++G LR L++L L SN+L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 176 PANXXXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVP 224
P + ++ +L +D+ NN LSG +P
Sbjct: 697 P------------------------QAMSALTMLTEIDLSNNNLSGPIP 721
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 32/218 (14%)
Query: 68 ISLQGKGLNGKVSPAIAG-LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGD 126
+SL G++ ++G LTGL L N YG +P + + L L L+ NN SG+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 127 IPPE-IGYMGSLQVLQLCYNQLTGSIPTQLGSL--------------------------- 158
+P + + M L+VL L +N+ +G +P L +L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 159 RKLSVLALQSNQLTGAIPANXXXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNT 218
L L LQ+N TG IP SFN+L G+IP L L L + N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 219 LSGSVPPALKRLN--EGFLYENNLELCGVGFSALKTCS 254
L G +P L + E + + N +L G S L C+
Sbjct: 454 LEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCT 490
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 22 ELRALMDMKAALDPEERYLSSWTINGDPCDGSFEGIACNEKGQVANISLQGKGLN----- 76
E+ L+ K L P++ L W+ N +PC +F+G+ C + +V +I L K LN
Sbjct: 13 EIHQLISFKDVL-PDKNLLPDWSSNKNPC--TFDGVTCRDD-KVTSIDLSSKPLNVGFSA 68
Query: 77 ------------------GKVSPAIAGLK---HLTGLYLHYNSLYGQIPREIANLTELSD 115
++ +++G K LT L L NSL G + + +L S
Sbjct: 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV-TTLTSLGSCSG 127
Query: 116 L-YLNVNNLSGDIPPEIG---YMGSLQVLQLCYNQLTGS------IPTQLGSLRKLSVLA 165
L +LNV++ + D P ++ + SL+VL L N ++G+ + G L+ L A
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL---A 184
Query: 166 LQSNQLTGAIPANXXXXXXXXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPP 225
+ N+++G + + S N+ IP L D L+ LDI N LSG
Sbjct: 185 ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241
Query: 226 ALKRLNE 232
A+ E
Sbjct: 242 AISTCTE 248
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 125 GDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANXXXXXX 184
G P GS+ L + YN L+G IP ++GS+ L +L L N ++G
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG----------- 670
Query: 185 XXXXXXSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVP---PALKRLNEGFLYENNL 240
SIP ++ D L +LD+ +N L G +P AL L E L NNL
Sbjct: 671 -------------SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 69 SLQGKGLNGKV-SPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDI 127
S+ G + G V S LKHL + N + G + +++ L L ++ NN S I
Sbjct: 162 SISGANVVGWVLSDGCGELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 216
Query: 128 PPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANXXXXXXXXX 187
P +G +LQ L + N+L+G + + +L +L + SNQ G IP
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 273
Query: 188 XXXSFNHLFGSIPRKLADA-PLLEVLDIRNNTLSGSVPP 225
+ N G IP L+ A L LD+ N G+VPP
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 32/226 (14%)
Query: 24 RALMDMKAALDPEERYLSSWTINGDPCDGSFEGIACNEKGQ---VANISLQGKGLNGK-- 78
+AL+ +K L LSSW D C+ ++ G+ C+ Q V N+ L G L
Sbjct: 9 QALLQIKKDLG-NPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP 67
Query: 79 VSPAIAGLKHLTGLYLH-YNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSL 137
+ ++A L +L LY+ N+L G IP IA LT+L LY+ N+SG IP + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 138 QVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANXXXXXXXXXXXXSFNHLFG 197
L YN L+G++P + SL L + N+++GAIP + SF+ LF
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS----------YGSFSKLFT 177
Query: 198 SIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEGF--LYENNLE 241
S + I N L+G +PP LN F L N LE
Sbjct: 178 S-------------MTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 87 KHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIP 128
K+L GL L N +YG +P+ + L L L ++ NNL G+IP
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 79 VSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQ 138
+S I LT LYL+ NSL ++P EI NL+ L L L+ N L+ +P E+G L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 139 VLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQL 171
N +T ++P + G+L L L ++ N L
Sbjct: 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 113 LSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLT 172
L+ LYLN N+L+ ++P EI + +L+VL L +N+LT S+P +LGS +L N +T
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 44 TINGDPCDGSFEGIACNEK----------GQVANISLQGKGLNGKVSPAIAGLKHLTGLY 93
T+ G C+ + + C K + LQ GL GL LT L
Sbjct: 6 TVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLN 65
Query: 94 LHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPT 153
L YN L +LTEL L L N L+ ++ L L L NQL S+P+
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPS 124
Query: 154 QL-GSLRKLSVLALQSNQLTGAIPA 177
+ L KL L L +NQL +IPA
Sbjct: 125 GVFDRLTKLKELRLNTNQLQ-SIPA 148
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 33/86 (38%)
Query: 86 LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145
L L LYL N L LT+L +L LN N L + +LQ L L N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 146 QLTGSIPTQLGSLRKLSVLALQSNQL 171
QL L KL + L NQ
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 44 TINGDPCDGSFEGIACNEK----------GQVANISLQGKGLNGKVSPAIAGLKHLTGLY 93
T+ G C+ + + C K + LQ GL GL LT L
Sbjct: 6 TVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLN 65
Query: 94 LHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPT 153
L YN L +LTEL L L N L+ ++ L L L NQL S+P+
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPS 124
Query: 154 QL-GSLRKLSVLALQSNQLTGAIPA 177
+ L KL L L +NQL +IPA
Sbjct: 125 GVFDRLTKLKELRLNTNQLQ-SIPA 148
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 33/86 (38%)
Query: 86 LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145
L L LYL N L LT+L +L LN N L + +LQ L L N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 146 QLTGSIPTQLGSLRKLSVLALQSNQL 171
QL L KL + L NQ
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 52 GSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLT 111
G F G+A + + LQ L L +LT L+LH N + R L
Sbjct: 123 GLFRGLA-----ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 112 ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQ-LGSLRKLSVLALQSN 169
L L L+ N ++ P +G L L L N L+ ++PT+ L LR L L L N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 48 DPCDGSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREI 107
DP +F G+ G++ + L GL GL L LYL N+L
Sbjct: 97 DP--ATFHGL-----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 108 ANLTELSDLYLNVNNLSGDIPPEIGYMG--SLQVLQLCYNQLTGSIPTQLGSLRKLSVLA 165
+L L+ L+L+ N +S PE + G SL L L N++ P L +L L
Sbjct: 150 RDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 166 LQSNQLTGAIP 176
L +N L+ A+P
Sbjct: 208 LFANNLS-ALP 217
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 52 GSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLT 111
G F G+A + + LQ L L +LT L+LH N + R L
Sbjct: 122 GLFRGLA-----ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Query: 112 ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQ-LGSLRKLSVLALQSN 169
L L L+ N ++ P +G L L L N L+ ++PT+ L LR L L L N
Sbjct: 177 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 234
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 48 DPCDGSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREI 107
DP +F G+ G++ + L GL GL L LYL N+L
Sbjct: 96 DP--ATFHGL-----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 148
Query: 108 ANLTELSDLYLNVNNLSGDIPPEIGYMG--SLQVLQLCYNQLTGSIPTQLGSLRKLSVLA 165
+L L+ L+L+ N +S PE + G SL L L N++ P L +L L
Sbjct: 149 RDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 166 LQSNQLTGAIP 176
L +N L+ A+P
Sbjct: 207 LFANNLS-ALP 216
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 82 AIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLS----GDIPPEIGYMGSL 137
GL HL LYL++N L P ++LT L L LN N L+ D+P +L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANL 528
Query: 138 QVLQLCYNQLTGSIPTQLGSLRKLSV 163
++L + NQL P SL L +
Sbjct: 529 EILDISRNQLLAPNPDVFVSLSVLDI 554
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 61 EKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNV 120
+ G + ++ L G + A GL L L LH N + P +L L LYL
Sbjct: 150 DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 121 NNLSGDIPPEIGY-MGSLQVLQL 142
NNLS +P E+ + SLQ L+L
Sbjct: 210 NNLSM-LPAEVLVPLRSLQYLRL 231
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 6/180 (3%)
Query: 68 ISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVN-NLSGD 126
I L G ++ + + ++LT L+LH N+L G LT L L L+ N L
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 127 IPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANXXXXXXXX 186
P +G L L L L P L L L LQ N L A+P N
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNL 154
Query: 187 XXXXSFNHLFGSIPRK-LADAPLLEVLDIRNNTLSGSVPPALK---RLNEGFLYENNLEL 242
+ S+P L+ L + N ++ P A + RL +L+ NNL +
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM 214
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 52 GSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLT 111
G F G+A + + LQ L L +LT L+LH N + L
Sbjct: 122 GLFRGLA-----ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Query: 112 ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSN 169
L L L+ N+++ P +G L L L N L+ L LR L L L N
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 53 SFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTE 112
+F G+ G + + L GL GL L LYL N+L +L
Sbjct: 99 TFRGL-----GHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 113 LSDLYLNVNNLSGDIPPEIGYMG--SLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQ 170
L+ L+L+ N + PE + G SL L L N + P L +L L L +N
Sbjct: 154 LTHLFLHGNRIPS--VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANN 211
Query: 171 LTGAIPA 177
L+ +PA
Sbjct: 212 LS-MLPA 217
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%)
Query: 86 LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145
L +L L L N L PR +LT+L+ L L N L + SL+ L+L N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 146 QLTGSIPTQLGSLRKLSVLALQSNQL 171
QL L +L L L +NQL
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 86 LKHLTGLYLHYNSLYGQIPREIAN-LTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCY 144
L LT L L YN L +P+ + + LT L +L L N L + L+ L+L
Sbjct: 132 LTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 145 NQLTGSIPTQLGSLRKLSVLALQSN 169
NQL SL KL +L LQ N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 86 LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEI-GYMGSLQVLQLCY 144
LK+L L++ N L L L++L L+ N L +PP + + L L L Y
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGY 142
Query: 145 NQLTGSIPTQLGSLRKLSVLALQSNQL 171
N+L L L L L +NQL
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQL 169
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 52 GSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYL 94
G+ G++ N G+V +SL+G G +G+V AI L L L L
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 137 LQVLQLCYNQL-TGSIPTQLGSLRKLSVLALQSNQLTGAIPA 177
+Q++ + YN L T + T L +KL L NQL G +PA
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA 348
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 92 LYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGS---LQVLQLCYNQLT 148
LYLH N + P +L L +LYL N L G +P +G S L VL L NQLT
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP--VGVFDSLTQLTVLDLGTNQLT 101
Query: 149 GSIPTQLGSLRKLSVLALQSNQLT 172
L L L + N+LT
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT 125
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 86 LKHLTGL-YLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCY 144
L + TGL YL + IANLT+L L LN N + DI P + + SL
Sbjct: 151 LSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYV 208
Query: 145 NQLTGSIPTQLGSLRKLSVLALQSNQLTGAIP-ANXXXXXXXXXXXXSFNHLFGSIPRKL 203
NQ+T P + + +L+ L + +N++T P AN + + +
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-----NAV 261
Query: 204 ADAPLLEVLDIRNNTLSG-SVPPALKRLNEGFLYENNL-----ELCGVGFSALKTCSASS 257
D L+ L++ +N +S SV L +LN FL N L E+ G G + L T S
Sbjct: 262 KDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIG-GLTNLTTLFLSQ 320
Query: 258 N-INPSRP 264
N I RP
Sbjct: 321 NHITDIRP 328
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 70 LQGKGLNG----KVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSG 125
L+ LNG +SP ++ L LT LY+ N + + NLT L +LYLN +N+S
Sbjct: 68 LEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNIS- 123
Query: 126 DIPP 129
DI P
Sbjct: 124 DISP 127
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 51 DGSFEGIACNEKGQVANISLQGKGLNG--KVSPAIAGLKHLTGLYLHYNSLYGQ-IPREI 107
D F+G C+ ++ + LQ GL KV+ + L L + NSL R
Sbjct: 367 DSVFQG--CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424
Query: 108 ANLTELSDLYLNVNNLSGDI----PPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSV 163
A + L L+ N L+G + PP++ +VL L +N SIP + L+ L
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPPKV------KVLDL-HNNRIMSIPKDVTHLQALQE 477
Query: 164 LALQSNQLTGA 174
L + SNQL
Sbjct: 478 LNVASNQLKSV 488
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 70 LQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPP 129
LQ L G+ PA LT L + +N L + L EL +LYL N L P
Sbjct: 89 LQSLPLLGQTLPA------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 130 EIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQL 171
+ L+ L L NQLT L L L L LQ N L
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 70 LQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPP 129
LQ L G+ PA LT L + +N L + L EL +LYL N L P
Sbjct: 89 LQSLPLLGQTLPA------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 130 EIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQL 171
+ L+ L L NQLT L L L L LQ N L
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 70 LQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPP 129
LQ L G+ PA LT L + +N L + L EL +LYL N L P
Sbjct: 89 LQSLPLLGQTLPA------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 130 EIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQL 171
+ L+ L L NQLT L L L L LQ N L
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 70 LQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPP 129
LQ L G+ PA LT L + +N L + L EL +LYL N L P
Sbjct: 89 LQSLPLLGQTLPA------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 130 EIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQL 171
+ L+ L L NQLT L L L L LQ N L
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3N75|A Chain A, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|B Chain B, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|C Chain C, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|D Chain D, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|E Chain E, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3Q16|A Chain A, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|B Chain B, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|C Chain C, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|D Chain D, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|E Chain E, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
Length = 715
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 226 ALKRLNEGFLY-----------ENNLELCGVGFSA----LKTCSASSNINPSRPEPYGAA 270
AL+RLN +Y ENN LCGV F L+ C S +N + P Y A
Sbjct: 25 ALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLP-LYAFA 83
Query: 271 TTHSTRNI 278
T+ST ++
Sbjct: 84 NTYSTLDV 91
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 79 VSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQ 138
V ++ KHLT + L N + + +N+T+L L L+ N L P + SL+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 139 VLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQL 171
+L L N ++ L LS LA+ +N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 11 LVLFTWANADTELRALMDMKAALDPEE-----RYLSSWTINGDPCDGSFEGIACNEKGQV 65
++ TW AD + +K + RYLS +TIN G E + E G+V
Sbjct: 372 VITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKV 431
Query: 66 ANISLQGKGLNGKVSPAIAGLK 87
A++ L SPA G+K
Sbjct: 432 ADLVLW--------SPAFFGVK 445
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 11 LVLFTWANADTELRALMDMKAALDPEE-----RYLSSWTINGDPCDGSFEGIACNEKGQV 65
++ TW AD + +K + RYLS +TIN G E + E G+V
Sbjct: 372 VITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKV 431
Query: 66 ANISLQGKGLNGKVSPAIAGLK 87
A++ L SPA G+K
Sbjct: 432 ADLVLW--------SPAFFGVK 445
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 46/123 (37%), Gaps = 16/123 (13%)
Query: 88 HLTGLYLHYNSLYGQIPRE--IANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145
H T L L+ N L G+I + L L L L N L+G P +Q LQL N
Sbjct: 30 HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 146 QLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANXXXXXXXXXXXXSFNHLFGSIPRKLAD 205
++ L +L L L NQ++ +P SF HL LA
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-------------SFEHLNSLTSLNLAS 135
Query: 206 APL 208
P
Sbjct: 136 NPF 138
>pdb|1PXE|A Chain A, Solution Structure Of A Cchhc Domain Of Neural Zinc Finger
Factor-1
Length = 63
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 80 SPAIAGLKHLTGLYLHYNSLYG-----QIPREIANLTE 112
+P G H+TGLY H+ SL G ++P EI + E
Sbjct: 22 TPGCDGTGHVTGLYPHHRSLSGCPHKDRVPPEILAMHE 59
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 34/144 (23%)
Query: 107 IANLTELSDLYLNVNNLSGDIPPEIGYM--------------GSLQVLQLCYNQLTGSIP 152
I +EL LN+++L ++PP+I + SL+ L C N+L+ ++P
Sbjct: 58 INQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLS-TLP 116
Query: 153 TQLGSLRKLSVLALQSNQLTG--AIPANXXXXXXXXXXXXSFNHLFGSIPRKLADAPL-L 209
SL+ L V +NQLT +PA + N+ +P + P L
Sbjct: 117 ELPASLKHLDV---DNNQLTXLPELPA-------LLEYINADNNQLTXLP----ELPTSL 162
Query: 210 EVLDIRNNTLS--GSVPPALKRLN 231
EVL +RNN L+ +P +L+ L+
Sbjct: 163 EVLSVRNNQLTFLPELPESLEALD 186
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNL 123
Q+ +SL + L LT LYLH N L LT+L +L L+ N L
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 124 SGDIPPEI-GYMGSLQVLQLCYNQLTGSIP 152
+P I + SLQ + L N S P
Sbjct: 113 KS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 101 GQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRK 160
+P I T++ LY +N ++ P + L L L NQLT L K
Sbjct: 32 ASVPAGIPTTTQVLHLY--INQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 161 LSVLALQSNQL 171
L+ LAL NQL
Sbjct: 90 LTHLALHINQL 100
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 132 GYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPA 177
G + QVL L NQ+T P SL +L+ L L NQLT A+P
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPV 81
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANXXXXXXXXXXXXSFNHLFGSIPRK 202
C + IP L S ++VL L NQL P N FN + P
Sbjct: 11 CSHLKLTHIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 203 LADAPLLEVLDIRNNTLS 220
PLL+VL++++N LS
Sbjct: 69 CQILPLLKVLNLQHNELS 86
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 65 VANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLS 124
+ + L G + + ++ GL +L L L +NS+ +AN L +L+LN N L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 125 GDIPPEIGYMGSLQVLQLCYNQLTG 149
+P + +QV+ L N ++
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 65 VANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLS 124
+ + L G + + ++ GL +L L L +NS+ +AN L +L+LN N L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 125 GDIPPEIGYMGSLQVLQLCYNQLTG 149
+P + +QV+ L N ++
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 3/124 (2%)
Query: 48 DPCDGSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREI 107
DP + +F+G+ E V L + + + L L L N +
Sbjct: 263 DPDNFTFKGL---EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319
Query: 108 ANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQ 167
LT L L L+ N L + L+VL L YN + L L LAL
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 168 SNQL 171
+NQL
Sbjct: 380 TNQL 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,686,398
Number of Sequences: 62578
Number of extensions: 423671
Number of successful extensions: 1096
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 151
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)