Query 044913
Match_columns 395
No_of_seqs 383 out of 3751
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2E-26 4.4E-31 249.5 22.0 211 17-229 25-258 (968)
2 PLN00113 leucine-rich repeat r 99.9 7.8E-23 1.7E-27 221.5 17.9 169 64-232 381-572 (968)
3 KOG4194 Membrane glycoprotein 99.8 1.7E-22 3.7E-27 193.4 -2.1 214 64-280 270-488 (873)
4 PLN03150 hypothetical protein; 99.8 2.6E-18 5.7E-23 176.1 17.8 134 17-178 368-509 (623)
5 KOG4237 Extracellular matrix p 99.8 2.5E-20 5.4E-25 171.3 -0.0 216 64-283 68-396 (498)
6 KOG0617 Ras suppressor protein 99.8 1.4E-20 2.9E-25 155.0 -4.8 164 62-231 32-196 (264)
7 KOG4194 Membrane glycoprotein 99.7 6.3E-17 1.4E-21 155.6 6.6 166 62-227 172-337 (873)
8 KOG0444 Cytoskeletal regulator 99.6 6.5E-17 1.4E-21 156.6 -1.3 164 63-231 103-291 (1255)
9 KOG0617 Ras suppressor protein 99.6 4.1E-17 8.9E-22 134.5 -3.3 145 83-232 29-174 (264)
10 KOG0444 Cytoskeletal regulator 99.5 4.7E-16 1E-20 150.7 -3.6 169 62-234 125-319 (1255)
11 KOG0472 Leucine-rich repeat pr 99.4 3.1E-14 6.7E-19 131.8 -2.5 151 65-220 390-541 (565)
12 PLN03150 hypothetical protein; 99.4 2.9E-12 6.3E-17 131.7 10.6 110 136-245 419-531 (623)
13 KOG0472 Leucine-rich repeat pr 99.3 1.8E-14 3.8E-19 133.4 -7.2 159 64-230 138-297 (565)
14 PRK15387 E3 ubiquitin-protein 99.3 7.2E-12 1.6E-16 129.4 10.9 49 184-233 423-471 (788)
15 PLN03210 Resistant to P. syrin 99.3 1.9E-11 4.1E-16 134.3 14.4 81 63-145 634-714 (1153)
16 PRK15370 E3 ubiquitin-protein 99.3 1.5E-11 3.3E-16 127.5 9.6 147 63-226 220-385 (754)
17 KOG0532 Leucine-rich repeat (L 99.2 1.3E-13 2.9E-18 132.6 -5.9 137 78-221 112-248 (722)
18 PRK15370 E3 ubiquitin-protein 99.2 2.5E-11 5.4E-16 125.9 9.8 119 63-196 199-317 (754)
19 PLN03210 Resistant to P. syrin 99.2 1E-10 2.2E-15 128.5 14.0 160 63-225 611-820 (1153)
20 cd00116 LRR_RI Leucine-rich re 99.2 2.6E-12 5.6E-17 121.7 0.8 158 63-220 81-263 (319)
21 KOG0618 Serine/threonine phosp 99.2 1.4E-12 3E-17 132.0 -1.1 128 89-219 361-488 (1081)
22 cd00116 LRR_RI Leucine-rich re 99.2 4E-12 8.6E-17 120.4 0.6 159 63-221 51-235 (319)
23 KOG0532 Leucine-rich repeat (L 99.2 1.2E-12 2.7E-17 126.1 -3.2 168 64-240 76-245 (722)
24 PRK15387 E3 ubiquitin-protein 99.1 2.3E-10 5.1E-15 118.4 11.8 133 64-220 223-355 (788)
25 KOG0618 Serine/threonine phosp 99.1 2.3E-12 5E-17 130.5 -2.9 151 64-217 360-510 (1081)
26 KOG4237 Extracellular matrix p 99.1 7.5E-12 1.6E-16 115.9 -1.0 142 113-254 69-213 (498)
27 PF14580 LRR_9: Leucine-rich r 99.1 6.5E-11 1.4E-15 101.1 3.6 104 88-196 20-126 (175)
28 COG4886 Leucine-rich repeat (L 98.9 4.2E-10 9.2E-15 110.0 3.8 152 63-220 116-268 (394)
29 KOG1259 Nischarin, modulator o 98.9 7.3E-11 1.6E-15 105.9 -1.6 130 86-221 283-413 (490)
30 PF14580 LRR_9: Leucine-rich r 98.9 7.8E-10 1.7E-14 94.5 3.7 109 108-221 16-127 (175)
31 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.2E-14 106.2 4.2 131 85-220 114-245 (394)
32 PF13855 LRR_8: Leucine rich r 98.8 3E-09 6.4E-14 74.8 3.0 59 88-146 2-60 (61)
33 KOG1259 Nischarin, modulator o 98.8 3.7E-10 8.1E-15 101.4 -2.2 129 64-198 285-414 (490)
34 PF13855 LRR_8: Leucine rich r 98.8 4.8E-09 1E-13 73.8 2.9 61 111-171 1-61 (61)
35 KOG3207 Beta-tubulin folding c 98.6 5.9E-09 1.3E-13 98.2 0.7 158 62-220 145-314 (505)
36 KOG3207 Beta-tubulin folding c 98.6 3.1E-09 6.8E-14 100.0 -1.8 137 84-220 143-284 (505)
37 KOG1909 Ran GTPase-activating 98.4 9.5E-08 2.1E-12 87.8 1.9 157 64-220 93-283 (382)
38 PF08263 LRRNT_2: Leucine rich 98.4 6.5E-07 1.4E-11 57.9 4.3 39 20-60 2-43 (43)
39 KOG4579 Leucine-rich repeat (L 98.3 1.7E-08 3.7E-13 80.9 -5.3 40 179-219 96-135 (177)
40 KOG4658 Apoptotic ATPase [Sign 98.3 5.4E-07 1.2E-11 95.5 4.2 148 64-214 524-675 (889)
41 KOG1909 Ran GTPase-activating 98.3 2E-07 4.3E-12 85.8 0.7 160 62-221 29-227 (382)
42 KOG4579 Leucine-rich repeat (L 98.3 9.3E-09 2E-13 82.3 -7.2 88 83-172 49-136 (177)
43 KOG1859 Leucine-rich repeat pr 98.2 1.4E-08 3.1E-13 101.0 -9.3 125 89-220 166-292 (1096)
44 KOG0531 Protein phosphatase 1, 98.1 3.6E-07 7.9E-12 89.9 -1.0 149 64-221 73-222 (414)
45 KOG1859 Leucine-rich repeat pr 98.1 2.4E-08 5.3E-13 99.4 -9.2 126 64-196 165-292 (1096)
46 KOG0531 Protein phosphatase 1, 98.1 2.8E-07 6.2E-12 90.7 -1.9 150 62-221 94-246 (414)
47 KOG4658 Apoptotic ATPase [Sign 98.1 1.4E-06 3.1E-11 92.3 2.5 107 63-170 545-653 (889)
48 KOG2982 Uncharacterized conser 98.1 1.3E-06 2.7E-11 79.0 1.1 161 64-224 72-266 (418)
49 PF12799 LRR_4: Leucine Rich r 97.8 4E-05 8.6E-10 49.7 4.2 36 184-220 2-37 (44)
50 KOG1644 U2-associated snRNP A' 97.8 5.6E-05 1.2E-09 64.9 5.9 61 86-148 41-101 (233)
51 PF12799 LRR_4: Leucine Rich r 97.7 4.8E-05 1E-09 49.3 3.6 36 160-196 2-37 (44)
52 KOG1644 U2-associated snRNP A' 97.6 9.2E-05 2E-09 63.6 5.3 103 112-216 43-149 (233)
53 KOG2982 Uncharacterized conser 97.5 7.7E-05 1.7E-09 67.7 3.8 173 33-214 76-286 (418)
54 COG5238 RNA1 Ran GTPase-activa 97.5 6.1E-05 1.3E-09 67.5 2.7 159 63-221 30-228 (388)
55 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.3E-10 80.0 1.2 113 109-223 146-266 (699)
56 KOG3665 ZYG-1-like serine/thre 97.5 2.8E-05 6.1E-10 80.6 0.3 150 62-213 121-281 (699)
57 KOG2120 SCF ubiquitin ligase, 97.4 1.1E-06 2.5E-11 79.3 -9.0 164 62-227 184-356 (419)
58 PRK15386 type III secretion pr 97.4 0.0006 1.3E-08 65.8 7.7 72 63-147 52-124 (426)
59 PRK15386 type III secretion pr 97.3 0.00097 2.1E-08 64.4 8.4 76 83-171 48-124 (426)
60 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 64.7 2.4 42 107-148 61-104 (260)
61 PF13306 LRR_5: Leucine rich r 97.3 0.00081 1.8E-08 54.4 6.5 105 82-191 7-111 (129)
62 COG5238 RNA1 Ran GTPase-activa 97.2 0.00033 7.1E-09 62.9 3.6 160 62-221 57-256 (388)
63 KOG2739 Leucine-rich acidic nu 97.0 0.00049 1.1E-08 61.5 3.0 90 104-197 36-130 (260)
64 KOG2120 SCF ubiquitin ligase, 97.0 3E-05 6.6E-10 70.3 -4.7 152 64-217 211-373 (419)
65 PF13306 LRR_5: Leucine rich r 96.9 0.0031 6.7E-08 50.9 6.6 116 64-185 13-128 (129)
66 KOG2123 Uncharacterized conser 96.5 5.7E-05 1.2E-09 67.9 -6.4 85 62-150 18-103 (388)
67 KOG2123 Uncharacterized conser 96.2 0.00021 4.5E-09 64.4 -5.0 78 133-213 39-123 (388)
68 TIGR00864 PCC polycystin catio 96.2 0.0035 7.5E-08 72.3 3.2 80 189-290 1-82 (2740)
69 PF08693 SKG6: Transmembrane a 94.9 0.016 3.5E-07 36.0 1.5 31 299-329 8-39 (40)
70 PF00560 LRR_1: Leucine Rich R 94.8 0.0098 2.1E-07 32.1 0.4 18 113-131 2-19 (22)
71 PF02439 Adeno_E3_CR2: Adenovi 94.8 0.026 5.6E-07 34.4 2.2 28 303-330 7-34 (38)
72 PF00560 LRR_1: Leucine Rich R 93.9 0.026 5.6E-07 30.4 0.8 12 185-196 2-13 (22)
73 KOG0473 Leucine-rich repeat pr 93.6 0.00095 2.1E-08 58.7 -8.0 86 108-196 39-124 (326)
74 KOG0473 Leucine-rich repeat pr 92.6 0.0016 3.4E-08 57.4 -8.3 85 84-171 39-123 (326)
75 PF01102 Glycophorin_A: Glycop 92.4 0.11 2.5E-06 41.3 2.7 21 312-332 74-94 (122)
76 PF15176 LRR19-TM: Leucine-ric 92.3 0.31 6.6E-06 36.9 4.7 42 297-338 12-53 (102)
77 KOG4308 LRR-containing protein 91.9 0.0015 3.2E-08 65.1 -10.5 157 65-221 89-276 (478)
78 PF13504 LRR_7: Leucine rich r 91.9 0.1 2.2E-06 26.1 1.2 11 113-123 3-13 (17)
79 PF15102 TMEM154: TMEM154 prot 91.4 0.46 1E-05 38.8 5.2 17 316-332 72-88 (146)
80 KOG4308 LRR-containing protein 89.9 0.0038 8.3E-08 62.2 -9.7 158 64-221 116-304 (478)
81 PF04478 Mid2: Mid2 like cell 87.8 0.24 5.2E-06 40.7 1.1 8 303-310 50-57 (154)
82 PF08374 Protocadherin: Protoc 86.7 1.1 2.4E-05 39.0 4.5 28 301-328 36-64 (221)
83 PTZ00382 Variant-specific surf 86.7 0.46 1E-05 36.3 1.9 13 303-315 67-79 (96)
84 smart00370 LRR Leucine-rich re 86.1 0.68 1.5E-05 25.7 2.0 14 111-124 2-15 (26)
85 smart00369 LRR_TYP Leucine-ric 86.1 0.68 1.5E-05 25.7 2.0 14 111-124 2-15 (26)
86 PF05454 DAG1: Dystroglycan (D 86.1 0.23 4.9E-06 45.9 0.0 21 351-371 184-204 (290)
87 PF12273 RCR: Chitin synthesis 85.9 0.87 1.9E-05 37.0 3.4 8 326-333 20-27 (130)
88 smart00369 LRR_TYP Leucine-ric 85.6 0.87 1.9E-05 25.3 2.3 13 184-196 3-15 (26)
89 smart00370 LRR Leucine-rich re 85.6 0.87 1.9E-05 25.3 2.3 13 184-196 3-15 (26)
90 PF01034 Syndecan: Syndecan do 84.6 0.28 6E-06 33.9 -0.1 10 323-332 31-40 (64)
91 KOG1947 Leucine rich repeat pr 84.2 0.21 4.6E-06 49.7 -1.2 110 86-195 187-307 (482)
92 PF02009 Rifin_STEVOR: Rifin/s 83.7 0.53 1.2E-05 43.8 1.3 9 322-330 277-285 (299)
93 PF01102 Glycophorin_A: Glycop 83.7 0.64 1.4E-05 37.1 1.6 35 299-333 64-98 (122)
94 PF02439 Adeno_E3_CR2: Adenovi 83.6 2.1 4.5E-05 26.3 3.3 30 304-333 5-34 (38)
95 PF06679 DUF1180: Protein of u 82.1 13 0.00027 31.4 8.7 35 309-343 100-135 (163)
96 PF01034 Syndecan: Syndecan do 81.2 0.67 1.4E-05 32.1 0.7 28 302-329 13-40 (64)
97 PF13908 Shisa: Wnt and FGF in 80.6 1.8 4E-05 37.2 3.4 16 301-316 77-92 (179)
98 KOG3864 Uncharacterized conser 79.4 0.36 7.9E-06 41.9 -1.3 81 136-216 102-185 (221)
99 PF01299 Lamp: Lysosome-associ 79.2 1.1 2.4E-05 42.2 1.8 21 312-332 281-301 (306)
100 PF06697 DUF1191: Protein of u 79.2 0.9 1.9E-05 41.5 1.1 37 297-333 208-244 (278)
101 PF14575 EphA2_TM: Ephrin type 79.1 0.76 1.7E-05 33.3 0.5 24 306-329 4-27 (75)
102 smart00082 LRRCT Leucine rich 78.8 0.56 1.2E-05 30.9 -0.3 37 239-276 1-37 (51)
103 PF08114 PMP1_2: ATPase proteo 78.1 4.7 0.0001 25.0 3.6 12 317-328 21-32 (43)
104 PHA03265 envelope glycoprotein 77.7 1.7 3.7E-05 40.7 2.4 21 312-332 358-378 (402)
105 PF13516 LRR_6: Leucine Rich r 77.3 0.37 8.1E-06 26.3 -1.2 14 183-196 2-15 (24)
106 PF06365 CD34_antigen: CD34/Po 77.1 5.3 0.00012 34.8 5.1 28 303-330 101-129 (202)
107 PF15102 TMEM154: TMEM154 prot 77.1 4.9 0.00011 32.9 4.6 32 305-336 58-89 (146)
108 PTZ00370 STEVOR; Provisional 76.9 2.3 5E-05 38.8 3.0 7 324-330 277-283 (296)
109 PF04478 Mid2: Mid2 like cell 76.4 1 2.3E-05 37.0 0.6 19 297-315 47-65 (154)
110 PF08114 PMP1_2: ATPase proteo 74.8 1.9 4.1E-05 26.7 1.3 31 302-332 9-39 (43)
111 PTZ00046 rifin; Provisional 74.4 1.6 3.4E-05 41.4 1.3 10 322-331 336-345 (358)
112 PF04689 S1FA: DNA binding pro 74.3 8.3 0.00018 26.6 4.4 31 299-329 10-40 (69)
113 TIGR01477 RIFIN variant surfac 73.5 1.7 3.7E-05 41.1 1.3 9 323-331 332-340 (353)
114 PF07213 DAP10: DAP10 membrane 71.2 5.2 0.00011 29.0 3.0 30 303-332 34-64 (79)
115 PF12877 DUF3827: Domain of un 71.1 7 0.00015 39.8 5.0 29 300-328 267-295 (684)
116 PF15050 SCIMP: SCIMP protein 70.3 3 6.5E-05 32.6 1.7 12 316-327 21-32 (133)
117 KOG1947 Leucine rich repeat pr 69.9 1.6 3.5E-05 43.3 0.3 113 108-220 185-308 (482)
118 smart00365 LRR_SD22 Leucine-ri 69.1 4.3 9.3E-05 22.8 1.8 14 111-124 2-15 (26)
119 PF02480 Herpes_gE: Alphaherpe 69.0 1.6 3.4E-05 43.2 0.0 18 305-322 355-372 (439)
120 PF15069 FAM163: FAM163 family 68.5 16 0.00035 29.8 5.7 22 303-324 7-28 (143)
121 smart00364 LRR_BAC Leucine-ric 67.4 4 8.6E-05 22.9 1.4 16 112-128 3-18 (26)
122 TIGR01478 STEVOR variant surfa 66.8 6.4 0.00014 36.0 3.4 7 324-330 281-287 (295)
123 PF06809 NPDC1: Neural prolife 66.4 22 0.00048 33.0 6.8 28 303-330 199-226 (341)
124 PF05961 Chordopox_A13L: Chord 65.7 10 0.00022 26.5 3.4 25 309-333 6-30 (68)
125 KOG3864 Uncharacterized conser 64.7 0.68 1.5E-05 40.3 -3.0 35 64-98 102-136 (221)
126 smart00368 LRR_RI Leucine rich 63.4 6 0.00013 22.4 1.7 13 112-124 3-15 (28)
127 PF12768 Rax2: Cortical protei 62.9 16 0.00035 33.8 5.4 9 62-70 36-44 (281)
128 PF05545 FixQ: Cbb3-type cytoc 62.5 9.9 0.00021 24.9 2.9 8 322-329 26-33 (49)
129 TIGR01478 STEVOR variant surfa 60.7 7.3 0.00016 35.6 2.6 24 314-337 268-291 (295)
130 PF14991 MLANA: Protein melan- 60.6 2.6 5.5E-05 32.7 -0.2 10 362-371 86-95 (118)
131 PF05568 ASFV_J13L: African sw 60.5 7.4 0.00016 31.6 2.3 19 312-330 39-57 (189)
132 PF12301 CD99L2: CD99 antigen 59.7 12 0.00026 31.7 3.6 29 302-330 114-142 (169)
133 PF08374 Protocadherin: Protoc 56.6 14 0.0003 32.4 3.5 32 297-328 36-67 (221)
134 PF03302 VSP: Giardia variant- 55.8 19 0.00042 35.2 4.9 19 312-330 378-396 (397)
135 PF07010 Endomucin: Endomucin; 54.5 44 0.00095 29.5 6.2 18 312-329 199-216 (259)
136 PF10873 DUF2668: Protein of u 53.1 19 0.00041 29.4 3.5 11 303-313 65-75 (155)
137 PHA03049 IMV membrane protein; 52.4 22 0.00047 24.8 3.2 22 310-331 7-28 (68)
138 PF02480 Herpes_gE: Alphaherpe 52.2 4.7 0.0001 39.9 0.0 34 300-333 353-386 (439)
139 PTZ00382 Variant-specific surf 51.6 11 0.00024 28.7 2.0 19 299-317 66-84 (96)
140 PF00446 GnRH: Gonadotropin-re 51.2 7.4 0.00016 16.4 0.5 7 365-371 3-9 (10)
141 PF05393 Hum_adeno_E3A: Human 50.1 20 0.00043 26.5 2.9 11 320-330 49-59 (94)
142 PF12606 RELT: Tumour necrosis 47.7 60 0.0013 21.5 4.6 11 312-322 10-20 (50)
143 PF10873 DUF2668: Protein of u 47.4 30 0.00066 28.2 3.8 24 302-325 61-84 (155)
144 PF07204 Orthoreo_P10: Orthore 46.5 10 0.00022 28.4 1.0 19 312-330 51-69 (98)
145 KOG3653 Transforming growth fa 46.1 1.5E+02 0.0033 29.6 9.1 25 310-334 162-186 (534)
146 PHA02902 putative IMV membrane 45.5 29 0.00063 24.0 3.0 20 311-330 9-28 (70)
147 PF15050 SCIMP: SCIMP protein 45.2 14 0.0003 29.0 1.6 29 302-330 10-38 (133)
148 PF02158 Neuregulin: Neureguli 45.1 7.1 0.00015 37.2 0.0 19 303-321 10-28 (404)
149 PF14979 TMEM52: Transmembrane 44.7 64 0.0014 26.5 5.3 19 303-321 20-38 (154)
150 PF10577 UPF0560: Uncharacteri 44.6 15 0.00032 38.7 2.1 27 303-329 273-299 (807)
151 PF05283 MGC-24: Multi-glycosy 42.9 27 0.00058 30.2 3.1 21 306-326 164-184 (186)
152 PF15069 FAM163: FAM163 family 42.0 32 0.00069 28.1 3.3 28 303-330 4-31 (143)
153 KOG3763 mRNA export factor TAP 40.5 15 0.00032 37.0 1.4 35 135-169 218-254 (585)
154 PF13908 Shisa: Wnt and FGF in 40.1 45 0.00098 28.5 4.2 16 306-321 79-94 (179)
155 PHA03105 EEV glycoprotein; Pro 39.6 47 0.001 27.5 3.9 9 382-390 77-85 (188)
156 PHA03099 epidermal growth fact 39.2 23 0.0005 28.3 2.0 21 312-332 112-132 (139)
157 PHA03265 envelope glycoprotein 38.8 69 0.0015 30.4 5.3 36 298-333 347-382 (402)
158 PF02158 Neuregulin: Neureguli 38.0 11 0.00023 36.0 0.0 28 304-331 8-36 (404)
159 KOG4341 F-box protein containi 37.7 18 0.00039 35.3 1.4 132 86-217 293-436 (483)
160 KOG3763 mRNA export factor TAP 36.9 18 0.00039 36.5 1.3 63 109-173 216-284 (585)
161 PF15330 SIT: SHP2-interacting 36.2 71 0.0015 24.9 4.3 8 322-329 16-23 (107)
162 PF10389 CoatB: Bacteriophage 35.9 55 0.0012 21.2 3.0 19 310-328 26-44 (46)
163 PF07172 GRP: Glycine rich pro 35.5 18 0.0004 27.5 0.9 12 1-12 1-12 (95)
164 PF03229 Alpha_GJ: Alphavirus 34.6 45 0.00098 26.1 2.9 19 305-323 86-104 (126)
165 PTZ00208 65 kDa invariant surf 34.4 11 0.00024 36.2 -0.5 28 301-328 385-412 (436)
166 PF06679 DUF1180: Protein of u 33.6 1.2E+02 0.0026 25.6 5.6 25 302-326 96-120 (163)
167 PF05454 DAG1: Dystroglycan (D 33.3 14 0.00031 34.3 0.0 12 318-329 162-173 (290)
168 PF00558 Vpu: Vpu protein; In 32.9 21 0.00045 26.2 0.8 6 323-328 27-32 (81)
169 PF12259 DUF3609: Protein of u 32.4 40 0.00086 32.5 2.9 20 311-331 309-328 (361)
170 PF15176 LRR19-TM: Leucine-ric 32.3 91 0.002 23.8 4.1 24 307-330 25-48 (102)
171 PHA03286 envelope glycoprotein 31.9 38 0.00083 33.2 2.6 11 2-12 3-13 (492)
172 PF14828 Amnionless: Amnionles 31.8 82 0.0018 31.3 5.0 19 40-60 13-31 (437)
173 PF15347 PAG: Phosphoprotein a 31.7 1.1E+02 0.0024 29.3 5.5 23 303-325 15-37 (428)
174 PRK04778 septation ring format 31.6 28 0.00061 35.9 1.9 14 316-329 13-26 (569)
175 PF05337 CSF-1: Macrophage col 31.1 16 0.00035 33.3 0.0 17 312-330 236-252 (285)
176 KOG1094 Discoidin domain recep 30.7 52 0.0011 33.7 3.4 6 40-45 44-49 (807)
177 PF03988 DUF347: Repeat of Unk 29.4 83 0.0018 21.1 3.3 16 315-330 37-52 (55)
178 PF14914 LRRC37AB_C: LRRC37A/B 29.0 58 0.0012 26.8 2.8 20 304-323 121-140 (154)
179 PF07213 DAP10: DAP10 membrane 29.0 27 0.00058 25.4 0.8 38 298-335 33-70 (79)
180 PF02529 PetG: Cytochrome B6-F 28.8 1.3E+02 0.0027 18.4 3.5 20 306-325 7-26 (37)
181 KOG3637 Vitronectin receptor, 28.7 53 0.0011 36.4 3.4 23 301-323 978-1000(1030)
182 COG3889 Predicted solute bindi 28.7 90 0.002 33.0 4.7 26 304-329 846-871 (872)
183 PF01708 Gemini_mov: Geminivir 28.4 1.1E+02 0.0024 22.8 3.9 8 318-325 50-57 (91)
184 PRK00665 petG cytochrome b6-f 28.1 72 0.0016 19.3 2.4 19 305-323 6-24 (37)
185 PRK09459 pspG phage shock prot 27.9 1.3E+02 0.0028 21.7 4.0 16 320-335 55-70 (76)
186 PF03597 CcoS: Cytochrome oxid 27.8 91 0.002 20.1 3.0 18 312-329 10-27 (45)
187 CHL00008 petG cytochrome b6/f 27.5 73 0.0016 19.3 2.3 18 306-323 7-24 (37)
188 PF12191 stn_TNFRSF12A: Tumour 26.9 49 0.0011 26.4 2.0 17 315-331 93-109 (129)
189 PHA02681 ORF089 virion membran 26.9 85 0.0018 23.0 3.0 18 312-329 10-27 (92)
190 PRK06432 NADH dehydrogenase su 26.5 1.1E+02 0.0025 25.1 4.1 19 358-376 60-78 (144)
191 PF10883 DUF2681: Protein of u 26.1 65 0.0014 24.1 2.4 15 314-328 11-25 (87)
192 PF05808 Podoplanin: Podoplani 24.7 24 0.00053 29.4 0.0 27 301-327 128-154 (162)
193 PTZ00370 STEVOR; Provisional 24.5 52 0.0011 30.4 2.0 27 313-339 263-289 (296)
194 PF11694 DUF3290: Protein of u 24.2 94 0.002 25.8 3.3 19 311-329 23-41 (149)
195 PF02009 Rifin_STEVOR: Rifin/s 24.2 55 0.0012 30.6 2.2 20 315-334 267-286 (299)
196 TIGR00847 ccoS cytochrome oxid 24.2 82 0.0018 20.9 2.4 18 312-329 11-28 (51)
197 PF05283 MGC-24: Multi-glycosy 23.7 75 0.0016 27.4 2.8 26 305-330 160-185 (186)
198 TIGR00864 PCC polycystin catio 23.5 53 0.0012 39.8 2.3 33 141-173 1-33 (2740)
199 KOG1219 Uncharacterized conser 23.3 1.8E+02 0.0039 35.3 6.1 9 66-74 3685-3693(4289)
200 COG3197 FixS Uncharacterized p 23.2 1.5E+02 0.0032 20.2 3.4 21 309-329 8-28 (58)
201 PF14851 FAM176: FAM176 family 23.2 58 0.0013 27.2 1.9 23 303-325 25-47 (153)
202 TIGR01495 ETRAMP Plasmodium ri 23.0 1.1E+02 0.0024 22.7 3.2 16 301-316 50-65 (85)
203 PF14283 DUF4366: Domain of un 22.5 32 0.00069 30.6 0.3 19 314-332 168-186 (218)
204 PF11770 GAPT: GRB2-binding ad 21.9 26 0.00056 28.8 -0.4 9 316-324 23-31 (158)
205 PF15298 AJAP1_PANP_C: AJAP1/P 21.7 1.1E+02 0.0025 26.4 3.4 6 322-327 122-127 (205)
206 smart00367 LRR_CC Leucine-rich 21.6 63 0.0014 17.6 1.3 11 111-121 2-12 (26)
207 PF10731 Anophelin: Thrombin i 21.5 51 0.0011 22.5 1.0 15 1-15 1-15 (65)
208 TIGR02205 septum_zipA cell div 21.0 80 0.0017 29.3 2.6 17 307-323 6-22 (284)
209 PF15065 NCU-G1: Lysosomal tra 20.7 26 0.00055 33.6 -0.7 19 312-330 329-347 (350)
210 KOG1024 Receptor-like protein 20.4 2.1E+02 0.0045 28.1 5.2 33 1-33 1-41 (563)
211 PRK08455 fliL flagellar basal 20.3 1.6E+02 0.0036 25.3 4.2 22 304-325 20-41 (182)
212 PF03229 Alpha_GJ: Alphavirus 20.1 3.3E+02 0.0071 21.5 5.2 29 300-328 85-113 (126)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2e-26 Score=249.45 Aligned_cols=211 Identities=38% Similarity=0.641 Sum_probs=145.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccC
Q 044913 17 ANADTELRALMDMKAALDPEERYLSSWTINGDPCDGSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHY 96 (395)
Q Consensus 17 ~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~~~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 96 (395)
-..+.|..+|+++|+.+......+.+|..+.|+| .|.||.|+..++|+.|+|++|.+.+.++..|..+++|+.|+|++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 25 MLHAEELELLLSFKSSINDPLKYLSNWNSSADVC--LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC--cCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 3367899999999999964445578998777888 89999998888999999999999999999999999999999999
Q ss_pred CCCCCCCccccC-CCCCCCEEEccCCCCCCCCC----------------------CCCCCCCCccEEEeecCCCCCCCcc
Q 044913 97 NSLYGQIPREIA-NLTELSDLYLNVNNLSGDIP----------------------PEIGYMGSLQVLQLCYNQLTGSIPT 153 (395)
Q Consensus 97 n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p----------------------~~~~~l~~L~~L~Ls~n~l~~~~p~ 153 (395)
|.+.+.+|..+. .+++|++|+|++|.+++.+| ..++.+++|++|++++|.+.+.+|.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 999888886544 77777777777776665444 3444445555555555555444555
Q ss_pred ccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhc
Q 044913 154 QLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKR 229 (395)
Q Consensus 154 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~ 229 (395)
.+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+.+
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=7.8e-23 Score=221.54 Aligned_cols=169 Identities=34% Similarity=0.545 Sum_probs=106.5
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCC----------
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGY---------- 133 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~---------- 133 (395)
+++.|++.+|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 4455555555555555555555555555555555555444544444444444444444444444433333
Q ss_pred -------------CCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcch
Q 044913 134 -------------MGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIP 200 (395)
Q Consensus 134 -------------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 200 (395)
.++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|
T Consensus 461 ~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred CceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 3556666666666666666667777777777777777777777777777777777777777777777
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCChhhhccCc
Q 044913 201 RKLADAPLLEVLDIRNNTLSGSVPPALKRLNE 232 (395)
Q Consensus 201 ~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~ 232 (395)
..+..+++|+.|++++|++++.+|..+..+..
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 77777777777777777777777776655443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.7e-22 Score=193.43 Aligned_cols=214 Identities=21% Similarity=0.221 Sum_probs=182.8
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
+++.|+|+.|+++..-...+.+|+.|+.|+|++|.|..+.++.+...++|++|+|++|+|+...+.+|..|..|+.|+|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 78899999999998888888999999999999999998889999999999999999999997778899999999999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCcc---ccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPA---NLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
+|.++...-..|..+.+|+.|+|++|.++..+.+ .|..|++|+.|++.+|++......+|.+++.|++|||.+|.+.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 9999977777889999999999999999875543 4778999999999999999766679999999999999999999
Q ss_pred CCCChhhhcc--CccccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044913 221 GSVPPALKRL--NEGFLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIPE 280 (395)
Q Consensus 221 ~~~p~~l~~l--~~l~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (395)
..-|..|..+ +.+.. ....++|||.+.|+.+|+...... ......|+.|+...+...
T Consensus 430 SIq~nAFe~m~Lk~Lv~-nSssflCDCql~Wl~qWl~~~~lq--~sv~a~CayPe~Lad~~i 488 (873)
T KOG4194|consen 430 SIQPNAFEPMELKELVM-NSSSFLCDCQLKWLAQWLYRRKLQ--SSVIAKCAYPEPLADQSI 488 (873)
T ss_pred eecccccccchhhhhhh-cccceEEeccHHHHHHHHHhcccc--cceeeeccCCccccccee
Confidence 8888888655 34433 334569999999999998766555 445567777776655443
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.79 E-value=2.6e-18 Score=176.11 Aligned_cols=134 Identities=37% Similarity=0.647 Sum_probs=78.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC---CCCCeeecCCC-----CCEEEEEecCCCCCCcCCccccCCCC
Q 044913 17 ANADTELRALMDMKAALDPEERYLSSWTINGDPCD---GSFEGIACNEK-----GQVANISLQGKGLNGKVSPAIAGLKH 88 (395)
Q Consensus 17 ~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~---~~~~gv~c~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~ 88 (395)
+..+.|+++|+.+|.++.... ..+|. +|+|. +.|.||.|... ..++.|+|++|.+.+.+|..+..+++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~--~~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL--RFGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc--cCCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 345678999999999885432 13784 57884 36999999521 13566666666666655555555555
Q ss_pred CcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccC
Q 044913 89 LTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQS 168 (395)
Q Consensus 89 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 168 (395)
|+.|+|++|.+.+.+|. .+..+++|+.|+|++|.+++.+|..++.+++|++|+|++
T Consensus 444 L~~L~Ls~N~l~g~iP~------------------------~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 444 LQSINLSGNSIRGNIPP------------------------SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred CCEEECCCCcccCcCCh------------------------HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55555555555544444 444555555555555555544454444444455555555
Q ss_pred ccCCCCCccc
Q 044913 169 NQLTGAIPAN 178 (395)
Q Consensus 169 n~l~~~~p~~ 178 (395)
|.+++.+|..
T Consensus 500 N~l~g~iP~~ 509 (623)
T PLN03150 500 NSLSGRVPAA 509 (623)
T ss_pred CcccccCChH
Confidence 5444444443
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=2.5e-20 Score=171.30 Aligned_cols=216 Identities=21% Similarity=0.185 Sum_probs=165.6
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccC-CCCCCCCCCCCCCCCCccEEEe
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNV-NNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L 142 (395)
..+.|.|..|.|+.+.+.+|..+++|+.|||++|.|+.+-|.+|.++++|..|-+.+ |+|+...-..|.+|.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 577899999999999999999999999999999999999999999999988887666 8887333334444443333332
Q ss_pred ecCCCC--------------------------------------------------------------------------
Q 044913 143 CYNQLT-------------------------------------------------------------------------- 148 (395)
Q Consensus 143 s~n~l~-------------------------------------------------------------------------- 148 (395)
.-|++.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 222111
Q ss_pred -----------------------------------CCCc-cccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccC
Q 044913 149 -----------------------------------GSIP-TQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSF 192 (395)
Q Consensus 149 -----------------------------------~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 192 (395)
+..| ..|..|++|+.|+|++|.++++-+..|..+..++.|+|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 0111 2367788999999999999988888899999999999999
Q ss_pred CCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc--ccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 044913 193 NHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG--FLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAA 270 (395)
Q Consensus 193 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (395)
|++...-...|.++..|+.|+|.+|+++...|..|..+..+ .....|++.|+|.+.|+..|....... ....|.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~----~~~~Cq 383 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVV----GNPRCQ 383 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCC----CCCCCC
Confidence 99886666788999999999999999999889888766544 234568999999999999999877632 334566
Q ss_pred CCCCCCCCCCCcC
Q 044913 271 TTHSTRNIPETAN 283 (395)
Q Consensus 271 ~~~~~~~~~~~~~ 283 (395)
.|...+.++.+..
T Consensus 384 ~p~~~~~~~~~dv 396 (498)
T KOG4237|consen 384 SPGFVRQIPISDV 396 (498)
T ss_pred CCchhccccchhc
Confidence 6666666555443
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.4e-20 Score=154.95 Aligned_cols=164 Identities=33% Similarity=0.536 Sum_probs=151.2
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|.|++|.++ .+|+.++.+.+|+.|++.+|+|. .+|..++.+++|+.|+++-|++. .+|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 457899999999998 56777999999999999999998 88999999999999999999999 9999999999999999
Q ss_pred eecCCCCC-CCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 142 LCYNQLTG-SIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 142 Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
|++|+++. .+|..|-.++.|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+. .+|..++.+..|+.|++++|.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 99999874 57888889999999999999998 88889999999999999999998 78999999999999999999998
Q ss_pred CCCChhhhccC
Q 044913 221 GSVPPALKRLN 231 (395)
Q Consensus 221 ~~~p~~l~~l~ 231 (395)
.+|+.+.++.
T Consensus 187 -vlppel~~l~ 196 (264)
T KOG0617|consen 187 -VLPPELANLD 196 (264)
T ss_pred -ecChhhhhhh
Confidence 7787777654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=6.3e-17 Score=155.58 Aligned_cols=166 Identities=23% Similarity=0.197 Sum_probs=131.0
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..++++|+|.+|.|+..-...|..+.+|..|.|+.|+++...+..|.+|++|+.|+|..|+|.-.---.|.+|++|+.|.
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 35788999999999888888899999999999999999877778888899999999999988733345677888888888
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
|..|.+....-..|..+.++++|+|..|+++..-...+.++++|+.|+|++|.|...-++.+...++|+.|+|++|+++.
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 88888776666677777778888888887776666667777788888888887777667777777778888888887776
Q ss_pred CCChhh
Q 044913 222 SVPPAL 227 (395)
Q Consensus 222 ~~p~~l 227 (395)
..+..|
T Consensus 332 l~~~sf 337 (873)
T KOG4194|consen 332 LDEGSF 337 (873)
T ss_pred CChhHH
Confidence 666554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=6.5e-17 Score=156.56 Aligned_cols=164 Identities=31% Similarity=0.389 Sum_probs=106.1
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
..++.|||++|.+. ..|..+..-+++..|+|++|+|..+....|-+++.|-.|||++|++. .+|+.+..+.+|++|.|
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhc
Confidence 35666777777665 45566666666666777777666443445566666667777777766 56666666666666666
Q ss_pred ecCCCC-------------------------CCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCC
Q 044913 143 CYNQLT-------------------------GSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 143 s~n~l~-------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 197 (395)
++|.+. ..+|.++..+.+|..++++.|++. ..|+.+..+++|+.|+|++|.|+
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it- 258 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT- 258 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-
Confidence 666543 135666666677777777777777 67777777777777777777776
Q ss_pred cchhhhcCCCCCcEEEccCCCCCCCCChhhhccC
Q 044913 198 SIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLN 231 (395)
Q Consensus 198 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~ 231 (395)
.+.-....+.+|++|+++.|+++ .+|+.++++.
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~ 291 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT 291 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence 33344455666666666666666 5666555443
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=4.1e-17 Score=134.50 Aligned_cols=145 Identities=30% Similarity=0.470 Sum_probs=132.9
Q ss_pred ccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCC
Q 044913 83 IAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLS 162 (395)
Q Consensus 83 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 162 (395)
+.++.+++.|.|++|.++ .+|..+..+.+|+.|++.+|++. .+|..++.++.|+.|++..|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446888999999999999 67778999999999999999999 89999999999999999999999 8999999999999
Q ss_pred EEeccCccCCC-CCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCc
Q 044913 163 VLALQSNQLTG-AIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNE 232 (395)
Q Consensus 163 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~ 232 (395)
+|+|.+|++.. .+|..|..++.|+.|+|++|.+. .+|..++.+++|+.|.++.|.+- ..|..++.+..
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 99999999986 68999999999999999999998 78888999999999999999987 68887765543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=4.7e-16 Score=150.66 Aligned_cols=169 Identities=27% Similarity=0.336 Sum_probs=141.6
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCC-----------------
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLS----------------- 124 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~----------------- 124 (395)
..+...|+|++|+|..+..+.|.+|+.|-.|||++|++. .+|..+..+..|++|+|++|.+.
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 346778999999999887788889999999999999987 66767777777777777777442
Q ss_pred --------CCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCC
Q 044913 125 --------GDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 125 --------~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 196 (395)
..+|.++..|.+|..+|+|.|.+. .+|+.+-.+.+|+.|+|++|.|+ .+....+.+.+|++|+++.|+++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT 281 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc
Confidence 246778888899999999999999 88999999999999999999998 55555667788999999999999
Q ss_pred CcchhhhcCCCCCcEEEccCCCCC-CCCChhhhccCccc
Q 044913 197 GSIPRKLADAPLLEVLDIRNNTLS-GSVPPALKRLNEGF 234 (395)
Q Consensus 197 ~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~~l~~l~~l~ 234 (395)
.+|.++..+++|+.|.+.+|+++ .-+|+.++++..+-
T Consensus 282 -~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 282 -VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred -cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 78999999999999999999887 35888888777653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.37 E-value=3.1e-14 Score=131.77 Aligned_cols=151 Identities=30% Similarity=0.459 Sum_probs=123.0
Q ss_pred EEEEEecCCCCCCcCCccccCCCCCcE-EEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 65 VANISLQGKGLNGKVSPAIAGLKHLTG-LYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 65 l~~L~L~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
|+.++++.|.+. .+|..+..++.+.+ +.+++|.+ +.+|..+..+++|..|+|++|-+. .+|..++.+..||.|+++
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccc
Confidence 666777777665 34444444444433 34444444 477888889999999999999998 889999999999999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
.|+|. .+|..+..+..|+++-.++|++....|+.+.++.+|++|||.+|.+. .+|..++++.+|++|++.+|+|.
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99988 78888888888888888889998666677999999999999999998 78889999999999999999998
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.35 E-value=2.9e-12 Score=131.69 Aligned_cols=110 Identities=38% Similarity=0.638 Sum_probs=98.7
Q ss_pred CccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEcc
Q 044913 136 SLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIR 215 (395)
Q Consensus 136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 215 (395)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhccC-c--cccccCCccCcCC
Q 044913 216 NNTLSGSVPPALKRLN-E--GFLYENNLELCGV 245 (395)
Q Consensus 216 ~N~l~~~~p~~l~~l~-~--l~~~~~n~~~c~~ 245 (395)
+|+++|.+|..+..+. . ...+.+|..+|+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCC
Confidence 9999999999886532 1 2345667777764
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=1.8e-14 Score=133.36 Aligned_cols=159 Identities=31% Similarity=0.444 Sum_probs=125.3
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
.+..++..+|+++ ..|+.+..+..|..|++.+|.++...|..+. ++.|++||...|-+. .+|+.++.|.+|+-|++.
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence 4566777777776 4677777888888888989888855555555 888899998888888 888888899999999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccc-cCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPAN-LGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
+|.+. .+| .|.++..|.+++++.|.+. .+|.. ..++.++.+|||.+|+++ ..|+.+.-+.+|..||+++|.++ .
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~ 289 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-S 289 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-c
Confidence 99888 666 6788888888888888887 45544 448888888888888888 67887877888888888888888 4
Q ss_pred CChhhhcc
Q 044913 223 VPPALKRL 230 (395)
Q Consensus 223 ~p~~l~~l 230 (395)
.|..++++
T Consensus 290 Lp~sLgnl 297 (565)
T KOG0472|consen 290 LPYSLGNL 297 (565)
T ss_pred CCcccccc
Confidence 66666655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=7.2e-12 Score=129.42 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc
Q 044913 184 MLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG 233 (395)
Q Consensus 184 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l 233 (395)
+|+.|++++|+++ .+|..+..+++|+.|++++|+|++..|..+..+...
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s~ 471 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 471 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhcC
Confidence 3455566666665 456666667777777777777777666666544433
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.31 E-value=1.9e-11 Score=134.28 Aligned_cols=81 Identities=25% Similarity=0.238 Sum_probs=41.4
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|+++.....+|. ++.+++|+.|+|++|.....+|..+..+++|+.|++++|..-..+|..+ ++++|+.|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 3455555555443333332 4555566666665555444555556666666666666543333444433 3444555444
Q ss_pred ecC
Q 044913 143 CYN 145 (395)
Q Consensus 143 s~n 145 (395)
++|
T Consensus 712 sgc 714 (1153)
T PLN03210 712 SGC 714 (1153)
T ss_pred CCC
Confidence 444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=1.5e-11 Score=127.52 Aligned_cols=147 Identities=25% Similarity=0.441 Sum_probs=88.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+.. +|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++
T Consensus 220 ~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 478889999988874 454442 46788888888877 5565543 46788888888877 5666543 46777777
Q ss_pred ecCCCCCCCccccC-------------------CCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhh
Q 044913 143 CYNQLTGSIPTQLG-------------------SLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKL 203 (395)
Q Consensus 143 s~n~l~~~~p~~l~-------------------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 203 (395)
++|.++. +|..+. -.++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+
T Consensus 291 s~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 291 YDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred CCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh
Confidence 7777763 333221 11345555555555552 333332 45666666666665 344433
Q ss_pred cCCCCCcEEEccCCCCCCCCChh
Q 044913 204 ADAPLLEVLDIRNNTLSGSVPPA 226 (395)
Q Consensus 204 ~~l~~L~~L~l~~N~l~~~~p~~ 226 (395)
.++|+.|++++|+++ .+|..
T Consensus 366 --p~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 366 --PPTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred --cCCcCEEECCCCcCC-CCCHh
Confidence 245666666666666 34443
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=1.3e-13 Score=132.65 Aligned_cols=137 Identities=35% Similarity=0.551 Sum_probs=98.6
Q ss_pred cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCC
Q 044913 78 KVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGS 157 (395)
Q Consensus 78 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 157 (395)
.+|+++.++..|++|||+.|++. .+|.-+..|+ |+.|.+++|+++ .+|..++.+.+|..||.+.|.+. .+|..++.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~ 187 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY 187 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh
Confidence 35666667777777777777766 4555444443 667777777777 67777777777777777777777 66777777
Q ss_pred CCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 158 LRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 158 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+.+|+.|.+..|++. .+|..+..| .|..||+++|++. .+|-.|-.|.+|++|-|.+|++..
T Consensus 188 l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 777777777777777 556666644 3777888888887 678888888888888888888873
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.24 E-value=2.5e-11 Score=125.95 Aligned_cols=119 Identities=24% Similarity=0.473 Sum_probs=90.1
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
..++.|+|++|.+.. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|+|++|.+. .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 368999999999985 455443 58999999999998 5666553 47999999999999 7777664 58999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 196 (395)
++|.++ .+|..+. ++|+.|++++|+++. +|..+. .+|+.|++++|.++
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 999999 5676554 589999999999984 444332 24455555555554
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.22 E-value=1e-10 Score=128.55 Aligned_cols=160 Identities=24% Similarity=0.300 Sum_probs=100.3
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++.+|.+. .++..+..+++|+.|+|+++.....+|. +..+++|++|+|++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 35667777777665 3455667788888888887765555664 677888888888887655577888888888888888
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCC--------------------cccc-----------------------
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAI--------------------PANL----------------------- 179 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--------------------p~~~----------------------- 179 (395)
++|.....+|..+ ++++|+.|++++|.....+ |..+
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 8865444555543 4555555555554322222 2110
Q ss_pred -------CCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCCh
Q 044913 180 -------GDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPP 225 (395)
Q Consensus 180 -------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 225 (395)
...++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 0113455666666655555666667777777777776644444554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=2.6e-12 Score=121.72 Aligned_cols=158 Identities=25% Similarity=0.300 Sum_probs=79.6
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCC---CcEEEccCCCCCC----CCccccCCC-CCCCEEEccCCCCCCC----CCCC
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKH---LTGLYLHYNSLYG----QIPREIANL-TELSDLYLNVNNLSGD----IPPE 130 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~p~~ 130 (395)
.+++.|++++|.+.+..+..+..+.. |+.|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 35666666666665444444444433 6666666665552 122334444 5666666666665522 1223
Q ss_pred CCCCCCccEEEeecCCCCCC----CccccCCCCCCCEEeccCccCCCC----CccccCCCCCCCEEEccCCCCCCcchhh
Q 044913 131 IGYMGSLQVLQLCYNQLTGS----IPTQLGSLRKLSVLALQSNQLTGA----IPANLGDLGMLMRLDLSFNHLFGSIPRK 202 (395)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 202 (395)
+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 44445566666666665532 222233445666666666655432 2233445555666666666655422221
Q ss_pred hc-----CCCCCcEEEccCCCCC
Q 044913 203 LA-----DAPLLEVLDIRNNTLS 220 (395)
Q Consensus 203 l~-----~l~~L~~L~l~~N~l~ 220 (395)
+. ..+.|+.|++++|.++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCC
Confidence 11 1245666666666554
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-12 Score=131.99 Aligned_cols=128 Identities=33% Similarity=0.401 Sum_probs=74.0
Q ss_pred CcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccC
Q 044913 89 LTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQS 168 (395)
Q Consensus 89 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 168 (395)
|+.|.+.+|.++...-..+.++++|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..++.|++|...+
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 444555556665555555566666666666666665222234556666666666666666 5556666666666666666
Q ss_pred ccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCC
Q 044913 169 NQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTL 219 (395)
Q Consensus 169 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 219 (395)
|.+. .+| .+..+++|+.+|++.|+++...-......++|++||+++|..
T Consensus 440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 6665 455 466666666666666666532222222236666666666654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=4e-12 Score=120.43 Aligned_cols=159 Identities=26% Similarity=0.265 Sum_probs=112.5
Q ss_pred CCEEEEEecCCCCCC------cCCccccCCCCCcEEEccCCCCCCCCccccCCCCC---CCEEEccCCCCCC----CCCC
Q 044913 63 GQVANISLQGKGLNG------KVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTE---LSDLYLNVNNLSG----DIPP 129 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~ 129 (395)
..++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|.+++ .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 457888888887762 23456677888888888888887655655555544 8888888888773 1223
Q ss_pred CCCCC-CCccEEEeecCCCCCC----CccccCCCCCCCEEeccCccCCCC----CccccCCCCCCCEEEccCCCCCCc--
Q 044913 130 EIGYM-GSLQVLQLCYNQLTGS----IPTQLGSLRKLSVLALQSNQLTGA----IPANLGDLGMLMRLDLSFNHLFGS-- 198 (395)
Q Consensus 130 ~~~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-- 198 (395)
.+..+ ++|+.|++++|.+++. ++..+..+..|++|++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 44556 7888888888888743 233456667888888888888742 333455667888888888888743
Q ss_pred --chhhhcCCCCCcEEEccCCCCCC
Q 044913 199 --IPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 199 --~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+...+..+++|++|++++|.+++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCch
Confidence 33455677888888888888875
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1.2e-12 Score=126.10 Aligned_cols=168 Identities=30% Similarity=0.464 Sum_probs=145.8
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
.....||+.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ .+|..+..|+ |+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 4567888888886 67888888999999999999998 88999999999999999999999 8888887775 8999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSV 223 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 223 (395)
+|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..++ |..||++.|+++ .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ec
Confidence 99999 88888998899999999999998 78888999999999999999998 5677777665 889999999998 89
Q ss_pred ChhhhccCcc--ccccCCc
Q 044913 224 PPALKRLNEG--FLYENNL 240 (395)
Q Consensus 224 p~~l~~l~~l--~~~~~n~ 240 (395)
|-.|.+++.| ....|||
T Consensus 227 Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred chhhhhhhhheeeeeccCC
Confidence 9998888766 3345555
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.15 E-value=2.3e-10 Score=118.36 Aligned_cols=133 Identities=26% Similarity=0.299 Sum_probs=67.0
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
+++.|++.+|.++. +|. .+++|++|+|++|.++. +|.. .++|+.|++++|.++ .+|.. ..+|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 45555555555553 222 13555556666555552 2321 245555555555555 33331 2345566666
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
+|.++ .+|. .+++|+.|++++|.+++ +|... .+|+.|++++|.+++ +|. ...+|+.|++++|+|+
T Consensus 291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 291 GNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLA 355 (788)
T ss_pred CCccc-cccc---cccccceeECCCCcccc-CCCCc---ccccccccccCcccc-ccc---cccccceEecCCCccC
Confidence 66666 3333 23567777777777764 33321 234445555555542 332 1135666666666665
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=2.3e-12 Score=130.45 Aligned_cols=151 Identities=30% Similarity=0.367 Sum_probs=128.7
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
.++.|.+.+|.++...-+.+.++++|+.|+|++|++.......+.+++.|++|+|++|.++ .+|..+..++.|++|...
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 5778999999999988899999999999999999999666678899999999999999999 889999999999999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNN 217 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 217 (395)
+|.+. ..| .+..++.|+++|++.|+++...-......++|++||+++|.-.......|..++++...++.-|
T Consensus 439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99998 777 7899999999999999998633222233389999999999865455566677777777777666
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=7.5e-12 Score=115.93 Aligned_cols=142 Identities=23% Similarity=0.281 Sum_probs=77.7
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccC-ccCCCCCccccCCCCCCCEEEcc
Q 044913 113 LSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQS-NQLTGAIPANLGDLGMLMRLDLS 191 (395)
Q Consensus 113 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~ 191 (395)
-.+++|..|.|+...|..|+.+++|+.|||++|.|+.+.|+.|.++.+|..|-+.+ |+|+......|..|.+|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34445555555533444555555555555555555555555555555554444433 55554444556666666666666
Q ss_pred CCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc--ccccCCccCcCCCCCCCccCC
Q 044913 192 FNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG--FLYENNLELCGVGFSALKTCS 254 (395)
Q Consensus 192 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~~~~~~~~~~~ 254 (395)
-|.+.-...+.|..+++|..|.+.+|.+...-...+..+..+ .....|++.|+|.+.|+.+..
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 666655555566666666666666666652222234433332 334556778888888776543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=6.5e-11 Score=101.14 Aligned_cols=104 Identities=24% Similarity=0.276 Sum_probs=25.4
Q ss_pred CCcEEEccCCCCCCCCccccC-CCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCcccc-CCCCCCCEEe
Q 044913 88 HLTGLYLHYNSLYGQIPREIA-NLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQL-GSLRKLSVLA 165 (395)
Q Consensus 88 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ 165 (395)
.++.|+|++|.|+.+ . .+. .+.+|+.|+|++|.|+ .++ .+..++.|++|++++|.++.. ...+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc-c-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 455555555555522 1 222 3455666666666665 222 355555666666666666532 2222 2355566666
Q ss_pred ccCccCCCCC-ccccCCCCCCCEEEccCCCCC
Q 044913 166 LQSNQLTGAI-PANLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 166 L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~ 196 (395)
+++|.|...- -..+..+++|+.|+|.+|.++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666554311 123344555555555555554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=4.2e-10 Score=110.04 Aligned_cols=152 Identities=30% Similarity=0.501 Sum_probs=105.8
Q ss_pred CCEEEEEecCCCCCCcCCccccCCC-CCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLK-HLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..++.|++.+|.+.. +++....++ +|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|.....++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 468889999888874 444455664 8999999999888 55567788899999999999998 6666666788888888
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
+++|.+. .+|.....+..|+++.+++|.+. ..+..+..+.++..+.+.+|++. .++..+..++.++.|++++|+++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 9888888 55555445556777777777433 34444555555666666666554 22444555555666666666655
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=7.3e-11 Score=105.91 Aligned_cols=130 Identities=28% Similarity=0.326 Sum_probs=104.2
Q ss_pred CCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEe
Q 044913 86 LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLA 165 (395)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 165 (395)
-..|+.|||++|.|+ .+..+..-+|.++.|++++|.+. .+. .+..+++|+.|||++|.++ .+...-..+.+.++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 346889999999988 67777778899999999999997 333 3788899999999999887 4445556788899999
Q ss_pred ccCccCCCCCccccCCCCCCCEEEccCCCCCCc-chhhhcCCCCCcEEEccCCCCCC
Q 044913 166 LQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGS-IPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 166 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
|+.|.+... ..+..+-+|..||+++|+|... -...++++|-|+++.+.+|++.+
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999988622 3467788899999999998742 23467889999999999999985
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=7.8e-10 Score=94.55 Aligned_cols=109 Identities=32% Similarity=0.424 Sum_probs=43.3
Q ss_pred CCCCCCCEEEccCCCCCCCCCCCCC-CCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCcccc-CCCCCC
Q 044913 108 ANLTELSDLYLNVNNLSGDIPPEIG-YMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANL-GDLGML 185 (395)
Q Consensus 108 ~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 185 (395)
.+..++++|+|.+|.|+ .+ +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++. +...+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 44557899999999998 44 3465 578999999999999944 357889999999999999995 43334 468999
Q ss_pred CEEEccCCCCCCc-chhhhcCCCCCcEEEccCCCCCC
Q 044913 186 MRLDLSFNHLFGS-IPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 186 ~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+.|++++|+|... .-..+..+++|+.|++.+|+++.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999999999752 22467789999999999999974
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=1.5e-09 Score=106.24 Aligned_cols=131 Identities=31% Similarity=0.496 Sum_probs=63.7
Q ss_pred CCCCCcEEEccCCCCCCCCccccCCCC-CCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCE
Q 044913 85 GLKHLTGLYLHYNSLYGQIPREIANLT-ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSV 163 (395)
Q Consensus 85 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 163 (395)
.++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|...+.+++|+.
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 3345555555555555 3333334442 5555555555555 44444555555555555555555 33333334455555
Q ss_pred EeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 164 LALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 164 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
|++++|.+. .+|........|+.|.+++|.+. ..+..+..+.++..+.+.+|++.
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence 555555555 33433333344555555555322 23334444555555555555544
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3e-09 Score=74.83 Aligned_cols=59 Identities=32% Similarity=0.390 Sum_probs=26.6
Q ss_pred CCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCC
Q 044913 88 HLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQ 146 (395)
Q Consensus 88 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 146 (395)
+|++|++++|.+....+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443333444444444444444444443333444444444444444443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=3.7e-10 Score=101.45 Aligned_cols=129 Identities=26% Similarity=0.320 Sum_probs=106.7
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
-++.+||++|.|+ .+.+++.-++.++.|++++|.|.. +. .+..+++|+.|||++|.++ .+...-..+.++++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 3778999999987 456677788999999999999983 22 3889999999999999998 555555678899999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCC-CccccCCCCCCCEEEccCCCCCCc
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGA-IPANLGDLGMLMRLDLSFNHLFGS 198 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~ 198 (395)
.|.+.. -..+..+-+|..|++.+|+|... -...+++++.|+++.|.+|.+.+.
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 998862 24567788999999999999742 225689999999999999999854
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=4.8e-09 Score=73.75 Aligned_cols=61 Identities=31% Similarity=0.420 Sum_probs=37.4
Q ss_pred CCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccC
Q 044913 111 TELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQL 171 (395)
Q Consensus 111 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 171 (395)
|+|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666644445666666666666666666655555566666666666665543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.9e-09 Score=98.17 Aligned_cols=158 Identities=27% Similarity=0.224 Sum_probs=93.4
Q ss_pred CCCEEEEEecCCCCCCc--CCccccCCCCCcEEEccCCCCCCCCcc-ccCCCCCCCEEEccCCCCCCCC-CCCCCCCCCc
Q 044913 62 KGQVANISLQGKGLNGK--VSPAIAGLKHLTGLYLHYNSLYGQIPR-EIANLTELSDLYLNVNNLSGDI-PPEIGYMGSL 137 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L 137 (395)
..+|+.|||+.|-+... +......|++|+.|+|+.|.+.--..+ .-..+++|+.|.|+.|.++... ......+|+|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 35788888888877633 234455788888888888877622221 1135567777777777776221 1123455677
Q ss_pred cEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCc--cccCCCCCCCEEEccCCCCCCc-chhh-----hcCCCCC
Q 044913 138 QVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIP--ANLGDLGMLMRLDLSFNHLFGS-IPRK-----LADAPLL 209 (395)
Q Consensus 138 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~-~p~~-----l~~l~~L 209 (395)
+.|+|..|.....-......+..|+.|+|++|++-. .+ ...+.++.|+.|+++.+.+... .|+. ...+++|
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 777777774222222333445667777777776653 22 3455666677777776666531 2222 3455667
Q ss_pred cEEEccCCCCC
Q 044913 210 EVLDIRNNTLS 220 (395)
Q Consensus 210 ~~L~l~~N~l~ 220 (395)
+.|++..|++.
T Consensus 304 ~~L~i~~N~I~ 314 (505)
T KOG3207|consen 304 EYLNISENNIR 314 (505)
T ss_pred eeeecccCccc
Confidence 77777777664
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.1e-09 Score=99.99 Aligned_cols=137 Identities=26% Similarity=0.229 Sum_probs=54.8
Q ss_pred cCCCCCcEEEccCCCCCCCCc--cccCCCCCCCEEEccCCCCCCCCCCC-CCCCCCccEEEeecCCCCCCCcc-ccCCCC
Q 044913 84 AGLKHLTGLYLHYNSLYGQIP--REIANLTELSDLYLNVNNLSGDIPPE-IGYMGSLQVLQLCYNQLTGSIPT-QLGSLR 159 (395)
Q Consensus 84 ~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~ 159 (395)
..+++++.|||+.|-+....+ .....||+|+.|+|+.|.+....... -..+++|+.|.|+.|.++...-. .+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 344555555555554432211 22344455555555555443111111 11234445555555554432211 122334
Q ss_pred CCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcc-hhhhcCCCCCcEEEccCCCCC
Q 044913 160 KLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSI-PRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~ 220 (395)
+|..|+|..|.....-......+..|+.|||++|++.... ....+.++.|..|+++.+.+.
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 4555555544321111122223344455555555444211 122344444555555444443
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=9.5e-08 Score=87.83 Aligned_cols=157 Identities=22% Similarity=0.257 Sum_probs=100.6
Q ss_pred CEEEEEecCCCCCCcCCcc----ccCCCCCcEEEccCCCCCCCC-------------ccccCCCCCCCEEEccCCCCCCC
Q 044913 64 QVANISLQGKGLNGKVSPA----IAGLKHLTGLYLHYNSLYGQI-------------PREIANLTELSDLYLNVNNLSGD 126 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~-------------p~~~~~l~~L~~L~L~~n~l~~~ 126 (395)
++++|+|++|.+.-..++. +.....|+.|.|.+|.+...- ......-+.|+++...+|++...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 6778888888776444433 345677777888877776221 12234456777777777777532
Q ss_pred C----CCCCCCCCCccEEEeecCCCCCC----CccccCCCCCCCEEeccCccCCC----CCccccCCCCCCCEEEccCCC
Q 044913 127 I----PPEIGYMGSLQVLQLCYNQLTGS----IPTQLGSLRKLSVLALQSNQLTG----AIPANLGDLGMLMRLDLSFNH 194 (395)
Q Consensus 127 ~----p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~ 194 (395)
. ...|...+.|+.+.+..|.+... +...|..++.|++|+|+.|.++. .+...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 1 12355567777788877776522 22345677888888888887764 244556677788888888887
Q ss_pred CCCcchh----hh-cCCCCCcEEEccCCCCC
Q 044913 195 LFGSIPR----KL-ADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 195 l~~~~p~----~l-~~l~~L~~L~l~~N~l~ 220 (395)
+...-.. .+ ...|+|+.|.+.+|.++
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 7643222 22 34677888888888776
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.36 E-value=6.5e-07 Score=57.87 Aligned_cols=39 Identities=36% Similarity=0.831 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhCC-CCCCCCCCCCCC--CCCCCCCCCeeecC
Q 044913 20 DTELRALMDMKAALD-PEERYLSSWTIN--GDPCDGSFEGIACN 60 (395)
Q Consensus 20 ~~~~~~L~~~~~~l~-~~~~~l~~W~~~--~~~c~~~~~gv~c~ 60 (395)
++|+++|++||+++. +....+.+|... .+|| +|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C--~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC--SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC--CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe--eeccEEeC
Confidence 678999999999996 455679999876 7999 79999995
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=1.7e-08 Score=80.86 Aligned_cols=40 Identities=35% Similarity=0.438 Sum_probs=15.3
Q ss_pred cCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCC
Q 044913 179 LGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTL 219 (395)
Q Consensus 179 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 219 (395)
+..++.|+.|+++.|.+. ..|..+..+.+|..|+..+|.+
T Consensus 96 ~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 333333333333333333 2333333333344444444433
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.28 E-value=5.4e-07 Score=95.49 Aligned_cols=148 Identities=28% Similarity=0.297 Sum_probs=99.0
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCC--CCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNS--LYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
.++.+.+-+|.+.-.... . ..+.|++|-+..|. +.......|..++.|+.|||++|.--+.+|..++.|-+|++|+
T Consensus 524 ~~rr~s~~~~~~~~~~~~-~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGS-S-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhhccCC-C-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 456666666655322111 1 23367788877775 4444455577788888888887766667888888888888888
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCC--CCcchhhhcCCCCCcEEEc
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHL--FGSIPRKLADAPLLEVLDI 214 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~L~~L~l 214 (395)
+++..++ .+|..+++|..|.+|++..+.....+|.....+.+|++|.+..... +...-..+..+.+|+.+..
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8888887 7788888888888888887766556677777788888888765442 2223334455555555554
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=2e-07 Score=85.79 Aligned_cols=160 Identities=23% Similarity=0.283 Sum_probs=107.3
Q ss_pred CCCEEEEEecCCCCCC----cCCccccCCCCCcEEEccCCC---CCCCCc-------cccCCCCCCCEEEccCCCCCCCC
Q 044913 62 KGQVANISLQGKGLNG----KVSPAIAGLKHLTGLYLHYNS---LYGQIP-------REIANLTELSDLYLNVNNLSGDI 127 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~---l~~~~p-------~~~~~l~~L~~L~L~~n~l~~~~ 127 (395)
...+++|+|+||.+.. .+...+...++|+..++++-- ....+| ..+...++|++|+||.|.+.-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3467889999988863 344556677788888887642 222333 34456678888888888887444
Q ss_pred CCC----CCCCCCccEEEeecCCCCCC-------------CccccCCCCCCCEEeccCccCCCC----CccccCCCCCCC
Q 044913 128 PPE----IGYMGSLQVLQLCYNQLTGS-------------IPTQLGSLRKLSVLALQSNQLTGA----IPANLGDLGMLM 186 (395)
Q Consensus 128 p~~----~~~l~~L~~L~Ls~n~l~~~-------------~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~ 186 (395)
+.. +..+.+|++|.|.+|.+.-. .......-+.|+++...+|++... +...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 443 35567888888888877521 111223446788888888887642 334466677888
Q ss_pred EEEccCCCCCC----cchhhhcCCCCCcEEEccCCCCCC
Q 044913 187 RLDLSFNHLFG----SIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 187 ~L~L~~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
.+.++.|.|.. .+...+..+++|+.|||++|.|+.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 88888887752 234567788888888888888874
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=9.3e-09 Score=82.32 Aligned_cols=88 Identities=26% Similarity=0.326 Sum_probs=47.6
Q ss_pred ccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCC
Q 044913 83 IAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLS 162 (395)
Q Consensus 83 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 162 (395)
+....+|+..+|++|.+....+..-..++.++.|+|.+|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 344555666666666666333333344456666666666666 55555666666666666666655 3344444455555
Q ss_pred EEeccCccCC
Q 044913 163 VLALQSNQLT 172 (395)
Q Consensus 163 ~L~L~~n~l~ 172 (395)
.|+..+|.+.
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 5555554444
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=1.4e-08 Score=100.99 Aligned_cols=125 Identities=30% Similarity=0.361 Sum_probs=77.4
Q ss_pred CcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccc-cCCCCCCCEEecc
Q 044913 89 LTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQ-LGSLRKLSVLALQ 167 (395)
Q Consensus 89 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~ 167 (395)
|...+.++|.+. .+..++.-++.|+.|+|+.|.++.. . .+..++.|++|||++|.+. .+|.. ...+ .|+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 444455566665 4555666667777777777777633 2 5667777777777777776 33332 2222 37777777
Q ss_pred CccCCCCCccccCCCCCCCEEEccCCCCCCc-chhhhcCCCCCcEEEccCCCCC
Q 044913 168 SNQLTGAIPANLGDLGMLMRLDLSFNHLFGS-IPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 168 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
+|.++.. ..+.++.+|+.||+++|-+.+. --..+..+..|+.|+|.+|++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777632 2355677777777777776542 1122344566777777777775
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=3.6e-07 Score=89.92 Aligned_cols=149 Identities=23% Similarity=0.257 Sum_probs=91.6
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
.+..+++..|.+.. .-..+..+++|+.|++.+|.|... ...+..+++|++|+|++|.|+.. ..+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 34455555555543 223356677777777777777733 32356677777777777777743 235566667777777
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccc-cCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPAN-LGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.++.
T Consensus 149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence 7777632 334457777777777777774322 1 4566777777777777752 2233344445555777776664
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=2.4e-08 Score=99.43 Aligned_cols=126 Identities=28% Similarity=0.256 Sum_probs=98.7
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCC-CCCCCCCccEEEe
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPP-EIGYMGSLQVLQL 142 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L 142 (395)
.+...+.+.|.+. ....++.-++.|+.|+|++|.++.. ..+..+++|++|||++|.+. .+|. ..... .|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 4667788888776 3456677789999999999999843 37889999999999999998 5554 22333 4999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCc-cccCCCCCCCEEEccCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIP-ANLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~ 196 (395)
++|.++.. ..+.+|.+|+.||++.|-|.+.-. ..+..+..|+.|+|.+|.+-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99998732 456789999999999999885321 23566788999999999885
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=2.8e-07 Score=90.67 Aligned_cols=150 Identities=24% Similarity=0.246 Sum_probs=95.2
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
...+..|++.+|.|..+... +..+++|++|++++|.|+...+ +..++.|+.|++.+|.++.. ..+..++.|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 34677788888877654332 5667788888888888774433 44556688888888887632 3455577788888
Q ss_pred eecCCCCCCCc-cccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCC--CCcEEEccCCC
Q 044913 142 LCYNQLTGSIP-TQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAP--LLEVLDIRNNT 218 (395)
Q Consensus 142 Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~l~~N~ 218 (395)
+++|.+...-+ . ...+.+|+.+.+..|.+... ..+..+..+..+++..|.++..-+ +..+. +|+.+++++|+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 88887774433 1 45667777788888777622 223344455555777777763221 22222 27778888887
Q ss_pred CCC
Q 044913 219 LSG 221 (395)
Q Consensus 219 l~~ 221 (395)
+..
T Consensus 244 i~~ 246 (414)
T KOG0531|consen 244 ISR 246 (414)
T ss_pred ccc
Confidence 764
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.09 E-value=1.4e-06 Score=92.31 Aligned_cols=107 Identities=28% Similarity=0.300 Sum_probs=93.5
Q ss_pred CCEEEEEecCCC--CCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEE
Q 044913 63 GQVANISLQGKG--LNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVL 140 (395)
Q Consensus 63 ~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 140 (395)
++++.|-+.+|. +.......|..|+.|+.|||++|.-.+.+|+.++.|-+||+|+|+.+.+. .+|..+.+|..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 368889999886 55455556888999999999999888899999999999999999999999 999999999999999
Q ss_pred EeecCCCCCCCccccCCCCCCCEEeccCcc
Q 044913 141 QLCYNQLTGSIPTQLGSLRKLSVLALQSNQ 170 (395)
Q Consensus 141 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 170 (395)
++..+.....+|.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 999988766667777789999999986654
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1.3e-06 Score=78.98 Aligned_cols=161 Identities=22% Similarity=0.209 Sum_probs=95.0
Q ss_pred CEEEEEecCCCCCC--cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCC-CCCCCCCCCCccEE
Q 044913 64 QVANISLQGKGLNG--KVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGD-IPPEIGYMGSLQVL 140 (395)
Q Consensus 64 ~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L 140 (395)
+|+.+||.+|.|+. .+...+.+|++|+.|+|+.|.+...+...-..+.+|+.|-|.+..+... ....+..+|.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 56777777777762 3444456777777788877777644333324556777777777776532 22345566677777
Q ss_pred EeecCCCCCCC----------cc--ccCC-----------------CCCCCEEeccCccCCCC-CccccCCCCCCCEEEc
Q 044913 141 QLCYNQLTGSI----------PT--QLGS-----------------LRKLSVLALQSNQLTGA-IPANLGDLGMLMRLDL 190 (395)
Q Consensus 141 ~Ls~n~l~~~~----------p~--~l~~-----------------l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L 190 (395)
.++.|.+.... |. .+.. .+++..+.+..|.+... .-..+..++.+.-|+|
T Consensus 152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL 231 (418)
T ss_pred hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence 77776432110 00 0111 23444444444444321 1123345566778888
Q ss_pred cCCCCCCc-chhhhcCCCCCcEEEccCCCCCCCCC
Q 044913 191 SFNHLFGS-IPRKLADAPLLEVLDIRNNTLSGSVP 224 (395)
Q Consensus 191 ~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~p 224 (395)
+.|+|... --+++..++.|..|.+.+|++..++-
T Consensus 232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 88888642 23577888999999999998875443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=4e-05 Score=49.66 Aligned_cols=36 Identities=42% Similarity=0.636 Sum_probs=20.5
Q ss_pred CCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 184 MLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 184 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
+|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666666 34445666666666666666665
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=5.6e-05 Score=64.86 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=33.0
Q ss_pred CCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCC
Q 044913 86 LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLT 148 (395)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 148 (395)
+.+...+||++|.+. --..|..++.|.+|.|++|+|+.+-|.--..+++|..|.|.+|.+.
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 345556666666664 2233555666666666666666333332233455555666555554
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=4.8e-05 Score=49.28 Aligned_cols=36 Identities=39% Similarity=0.516 Sum_probs=20.2
Q ss_pred CCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCC
Q 044913 160 KLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 196 (395)
+|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 34445566666666666666665
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=9.2e-05 Score=63.59 Aligned_cols=103 Identities=23% Similarity=0.194 Sum_probs=51.4
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCC-ccccCCCCCCCEEEc
Q 044913 112 ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAI-PANLGDLGMLMRLDL 190 (395)
Q Consensus 112 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L 190 (395)
+...+||++|.+. .+ ..|..++.|.+|.+.+|+++...|.--.-+++|+.|.|.+|+|...- -+-+..+++|+.|-+
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445556666554 11 23455555666666666665544444444455666666666554210 012344555666666
Q ss_pred cCCCCCCcch---hhhcCCCCCcEEEccC
Q 044913 191 SFNHLFGSIP---RKLADAPLLEVLDIRN 216 (395)
Q Consensus 191 ~~N~l~~~~p---~~l~~l~~L~~L~l~~ 216 (395)
-+|+++..-- -.+..+|+|+.||.+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6665542110 1234556666666543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=7.7e-05 Score=67.72 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=113.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCC-CccccCCCC
Q 044913 33 LDPEERYLSSWTINGDPCDGSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQ-IPREIANLT 111 (395)
Q Consensus 33 l~~~~~~l~~W~~~~~~c~~~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~ 111 (395)
+|..++.+++|.. -|-.|...++++.|+|+.|.+...+...-..+.+|+.|-|.+..+.-. ..+.+..+|
T Consensus 76 lDL~~N~iSdWse---------I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 76 LDLTGNLISDWSE---------IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhcccchhccHHH---------HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 4555566666632 122345678999999999999855443335678999999999888733 445667888
Q ss_pred CCCEEEccCCCCCCCC--CCCC---------------------------CCCCCccEEEeecCCCCCC-CccccCCCCCC
Q 044913 112 ELSDLYLNVNNLSGDI--PPEI---------------------------GYMGSLQVLQLCYNQLTGS-IPTQLGSLRKL 161 (395)
Q Consensus 112 ~L~~L~L~~n~l~~~~--p~~~---------------------------~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L 161 (395)
.+++|.++.|++.... .... .-++++..+-+..|.+... ....+..++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 8899988888543110 0001 1134555555555555422 12344566778
Q ss_pred CEEeccCccCCC-CCccccCCCCCCCEEEccCCCCCCcchh------hhcCCCCCcEEEc
Q 044913 162 SVLALQSNQLTG-AIPANLGDLGMLMRLDLSFNHLFGSIPR------KLADAPLLEVLDI 214 (395)
Q Consensus 162 ~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~l 214 (395)
-.|+|+.|+|.. .--+.+..+++|..|.+++|.+.+.+.. .++.+++++.|+=
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 899999999874 2235688899999999999998754322 3456777776653
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.50 E-value=6.1e-05 Score=67.52 Aligned_cols=159 Identities=21% Similarity=0.223 Sum_probs=96.9
Q ss_pred CCEEEEEecCCCCCCc----CCccccCCCCCcEEEccCCCCC---CCCc-------cccCCCCCCCEEEccCCCCCCCCC
Q 044913 63 GQVANISLQGKGLNGK----VSPAIAGLKHLTGLYLHYNSLY---GQIP-------REIANLTELSDLYLNVNNLSGDIP 128 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~L~~n~l~~~~p 128 (395)
..++.++|+||.|... +...+.+-.+|+..++++-... ..++ .++.++|+|+..+|+.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 3567888888887644 3344555667777777654221 1222 355677888888888888876555
Q ss_pred CC----CCCCCCccEEEeecCCCCCCCcc-------------ccCCCCCCCEEeccCccCCCCCc----cccCCCCCCCE
Q 044913 129 PE----IGYMGSLQVLQLCYNQLTGSIPT-------------QLGSLRKLSVLALQSNQLTGAIP----ANLGDLGMLMR 187 (395)
Q Consensus 129 ~~----~~~l~~L~~L~Ls~n~l~~~~p~-------------~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~ 187 (395)
+. ++.-+.|.+|.|++|.+.-.--. ....-+.|++.....|++..-.. ..+..-..|+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 43 45567788888888876411111 11233678888888887763211 11222356778
Q ss_pred EEccCCCCCCc-----chhhhcCCCCCcEEEccCCCCCC
Q 044913 188 LDLSFNHLFGS-----IPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 188 L~L~~N~l~~~-----~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+.+..|.|.-. +...+..+.+|+.||+++|.|+-
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 88888877522 11233456778888888888773
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=3.4e-05 Score=80.01 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=56.1
Q ss_pred CCCCCCEEEccCCCCCCC-CCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCC-CCccccCCCCCCC
Q 044913 109 NLTELSDLYLNVNNLSGD-IPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTG-AIPANLGDLGMLM 186 (395)
Q Consensus 109 ~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~ 186 (395)
.||+|+.|.+.+-.+... .-.-..++++|..||+|+.+++.. ..++.|++|++|.+.+=.+.. ..-..+..|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 455555555555444311 111234455566666666555532 445555666666555544432 1112345566666
Q ss_pred EEEccCCCCCCcc--h----hhhcCCCCCcEEEccCCCCCCCC
Q 044913 187 RLDLSFNHLFGSI--P----RKLADAPLLEVLDIRNNTLSGSV 223 (395)
Q Consensus 187 ~L~L~~N~l~~~~--p----~~l~~l~~L~~L~l~~N~l~~~~ 223 (395)
+||+|........ . +.-..+|+|+.||++++.+....
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6666655443211 1 12234667777777766665433
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=2.8e-05 Score=80.61 Aligned_cols=150 Identities=21% Similarity=0.193 Sum_probs=105.7
Q ss_pred CCCEEEEEecCCCCC-CcCCccc-cCCCCCcEEEccCCCCC-CCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCcc
Q 044913 62 KGQVANISLQGKGLN-GKVSPAI-AGLKHLTGLYLHYNSLY-GQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQ 138 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~-~~~~~~~-~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 138 (395)
+.+++.|+++|...- ..-+..+ ..||.|+.|.+.+-.+. +.+-....++|+|..||+++++++.. ..++.|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 457889999886543 1122233 36899999999997765 23445668999999999999999844 6789999999
Q ss_pred EEEeecCCCCC-CCccccCCCCCCCEEeccCccCCCCC--c----cccCCCCCCCEEEccCCCCCCcchhhh-cCCCCCc
Q 044913 139 VLQLCYNQLTG-SIPTQLGSLRKLSVLALQSNQLTGAI--P----ANLGDLGMLMRLDLSFNHLFGSIPRKL-ADAPLLE 210 (395)
Q Consensus 139 ~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~--p----~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~ 210 (395)
.|.+.+=.+.. ..-..+.+|++|++||++........ . +.-..++.|+.||.++..+...+-+.+ ..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99888766653 23345678999999999987655321 1 223468999999999998876544332 3344444
Q ss_pred EEE
Q 044913 211 VLD 213 (395)
Q Consensus 211 ~L~ 213 (395)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 443
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=1.1e-06 Score=79.31 Aligned_cols=164 Identities=17% Similarity=0.175 Sum_probs=104.4
Q ss_pred CCCEEEEEecCCCCC-CcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCC-CCCC-CCCCCCCCCCcc
Q 044913 62 KGQVANISLQGKGLN-GKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNN-LSGD-IPPEIGYMGSLQ 138 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~ 138 (395)
+.+++.|||+...|+ ..+...++.+.+|+.|.|.++.+.+.+...+.+-.+|+.|+|+.+. ++.. ..--+.+++.|.
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 346778888877776 2334445677888888888888887777888888888888888753 3311 011246678888
Q ss_pred EEEeecCCCCCCCcccc-CC-CCCCCEEeccCccCC---CCCccccCCCCCCCEEEccCCCC-CCcchhhhcCCCCCcEE
Q 044913 139 VLQLCYNQLTGSIPTQL-GS-LRKLSVLALQSNQLT---GAIPANLGDLGMLMRLDLSFNHL-FGSIPRKLADAPLLEVL 212 (395)
Q Consensus 139 ~L~Ls~n~l~~~~p~~l-~~-l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L 212 (395)
.|+++++.+.......+ .. -.+|+.|++++..-. ..+.......++|.+|||++|.. +......|..++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 88888887664322111 11 145677777664321 11222234678888888887654 43444567778888888
Q ss_pred EccCCCCCCCCChhh
Q 044913 213 DIRNNTLSGSVPPAL 227 (395)
Q Consensus 213 ~l~~N~l~~~~p~~l 227 (395)
.++.+.. .+|..+
T Consensus 344 SlsRCY~--i~p~~~ 356 (419)
T KOG2120|consen 344 SLSRCYD--IIPETL 356 (419)
T ss_pred ehhhhcC--CChHHe
Confidence 8887754 455543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.35 E-value=0.0006 Score=65.78 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=44.9
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCC-CCCCCCCCCCCCCCCccEEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVN-NLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~ 141 (395)
.+++.|++++|.+... |. --.+|+.|.++++.--..+|..+. ++|++|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEE
Confidence 3567888888876643 31 123588888887543335565443 57888888887 554 4553 456666
Q ss_pred eecCCC
Q 044913 142 LCYNQL 147 (395)
Q Consensus 142 Ls~n~l 147 (395)
+..+..
T Consensus 119 L~~n~~ 124 (426)
T PRK15386 119 IKGSAT 124 (426)
T ss_pred eCCCCC
Confidence 665543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00097 Score=64.40 Aligned_cols=76 Identities=18% Similarity=0.367 Sum_probs=52.5
Q ss_pred ccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecC-CCCCCCccccCCCCCC
Q 044913 83 IAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN-QLTGSIPTQLGSLRKL 161 (395)
Q Consensus 83 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L 161 (395)
+..+.+++.|++++|.++ .+|. + .++|++|.++++.--..+|..+ ..+|+.|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 445688999999999887 4452 2 2369999998843333677655 368999999998 444 4553 46
Q ss_pred CEEeccCccC
Q 044913 162 SVLALQSNQL 171 (395)
Q Consensus 162 ~~L~L~~n~l 171 (395)
+.|++..+..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 6777766554
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.00015 Score=64.66 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=19.7
Q ss_pred cCCCCCCCEEEccCC--CCCCCCCCCCCCCCCccEEEeecCCCC
Q 044913 107 IANLTELSDLYLNVN--NLSGDIPPEIGYMGSLQVLQLCYNQLT 148 (395)
Q Consensus 107 ~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 148 (395)
+..+++|+.|.++.| ++.+.++.-...+++|++|+++.|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344455555555555 333333333333355555555555544
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.00081 Score=54.37 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=39.3
Q ss_pred cccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCC
Q 044913 82 AIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKL 161 (395)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 161 (395)
+|.+.++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|..+++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555555543 344344445555555555555553 4323333455555555555543 2222223344445555
Q ss_pred CEEeccCccCCCCCccccCCCCCCCEEEcc
Q 044913 162 SVLALQSNQLTGAIPANLGDLGMLMRLDLS 191 (395)
Q Consensus 162 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (395)
+.+.+..+ +...-...|... .|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555433 322222334443 55555544
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.19 E-value=0.00033 Score=62.94 Aligned_cols=160 Identities=21% Similarity=0.144 Sum_probs=96.8
Q ss_pred CCCEEEEEecCCCCC---Cc-------CCccccCCCCCcEEEccCCCCCCCCcc----ccCCCCCCCEEEccCCCCCCCC
Q 044913 62 KGQVANISLQGKGLN---GK-------VSPAIAGLKHLTGLYLHYNSLYGQIPR----EIANLTELSDLYLNVNNLSGDI 127 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~---~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~ 127 (395)
..+++..++++-... .. +.+++.++++|+..+||+|.+....|. .++.-+.|.+|.|++|.+...-
T Consensus 57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 345666666653221 12 224566788888888888888766553 4466678888888888775221
Q ss_pred CCC-------------CCCCCCccEEEeecCCCCCCCc----cccCCCCCCCEEeccCccCCCCC-----ccccCCCCCC
Q 044913 128 PPE-------------IGYMGSLQVLQLCYNQLTGSIP----TQLGSLRKLSVLALQSNQLTGAI-----PANLGDLGML 185 (395)
Q Consensus 128 p~~-------------~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L 185 (395)
... ...-|.|++.....|++..-.- ..+..-.+|+++.+..|.|.-.- -..+..+.+|
T Consensus 137 G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L 216 (388)
T COG5238 137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL 216 (388)
T ss_pred hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence 112 2234678888888887652111 11222356777777777765210 0123455677
Q ss_pred CEEEccCCCCCCc----chhhhcCCCCCcEEEccCCCCCC
Q 044913 186 MRLDLSFNHLFGS----IPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 186 ~~L~L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
++|||+.|-++.. +...+..|+.|+.|.+.+|-++.
T Consensus 217 evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 217 EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred eeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 8888888877632 33455667777777777777664
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.00049 Score=61.52 Aligned_cols=90 Identities=22% Similarity=0.219 Sum_probs=52.6
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecC--CCCCCCccccCCCCCCCEEeccCccCCCCCccc---
Q 044913 104 PREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN--QLTGSIPTQLGSLRKLSVLALQSNQLTGAIPAN--- 178 (395)
Q Consensus 104 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--- 178 (395)
......+..|+.|.+.+..++.. ..|-.|++|++|.++.| +..+.++--...+++|++++++.|.+.. +..
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~p 111 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRP 111 (260)
T ss_pred ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccch
Confidence 33334445555555555555421 24556778888888888 4454444444555777777777777762 222
Q ss_pred cCCCCCCCEEEccCCCCCC
Q 044913 179 LGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 179 ~~~l~~L~~L~L~~N~l~~ 197 (395)
+..+.+|..|++.+|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 3344556666666665553
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=3e-05 Score=70.28 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=108.1
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCC-CCCC-CccccCCCCCCCEEEccCCCCCCCCCCC-CCC-CCCccE
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNS-LYGQ-IPREIANLTELSDLYLNVNNLSGDIPPE-IGY-MGSLQV 139 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~-l~~L~~ 139 (395)
+++.|+|.|+.+...+...+++-.+|+.|+|+.+. ++.. ..-.+.+++.|.+|+|+.+.+....-.. +.. -++|+.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 68899999999999888999999999999999763 4421 2234578899999999999887433211 111 157888
Q ss_pred EEeecCCCC---CCCccccCCCCCCCEEeccCcc-CCCCCccccCCCCCCCEEEccCCCCCCcchh---hhcCCCCCcEE
Q 044913 140 LQLCYNQLT---GSIPTQLGSLRKLSVLALQSNQ-LTGAIPANLGDLGMLMRLDLSFNHLFGSIPR---KLADAPLLEVL 212 (395)
Q Consensus 140 L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L 212 (395)
|++++..-. ..+..-...+++|.+|||+.|. ++...-..|..++.|++|.++.|.. .+|. .+...|.|.+|
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEE
Confidence 888876422 1111223567999999998765 4433334577888999999988764 3555 35677899999
Q ss_pred EccCC
Q 044913 213 DIRNN 217 (395)
Q Consensus 213 ~l~~N 217 (395)
|+.+.
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 98765
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.88 E-value=0.0031 Score=50.90 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=67.7
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
+++.+.+.. .+......+|.++++|+.+.+.++ +.......|..+++|+.+.+.+ .+.......|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 688888875 677777788999999999999886 7666677889998999999976 5543555678889999999997
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGML 185 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 185 (395)
.+ +.......|.+. .|+.+.+.. .+.......|.+.++|
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 75 554555667776 899998876 3333444455555444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=5.7e-05 Score=67.91 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=50.9
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCC-CCCCCCCCccEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIP-PEIGYMGSLQVL 140 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L 140 (395)
..++++|+.-|++|..+ ....+|+.|+.|.|+-|.|+..-| +..+++|++|+|..|.|...-. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566666666666532 123467778888888887774333 5677788888888887762211 134555555555
Q ss_pred EeecCCCCCC
Q 044913 141 QLCYNQLTGS 150 (395)
Q Consensus 141 ~Ls~n~l~~~ 150 (395)
-|..|...+.
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 5555554443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00021 Score=64.41 Aligned_cols=78 Identities=29% Similarity=0.301 Sum_probs=38.6
Q ss_pred CCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCc--cccCCCCCCCEEEccCCCCCCcchh-----hhcC
Q 044913 133 YMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIP--ANLGDLGMLMRLDLSFNHLFGSIPR-----KLAD 205 (395)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~-----~l~~ 205 (395)
.|+.|+.|.|+-|.++.. ..+..+++|++|+|..|.|.. +. .-+.++++|+.|.|..|.-.|.-+. .+--
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 444555555555555422 223455556666666665552 11 1245566666666666655443321 3344
Q ss_pred CCCCcEEE
Q 044913 206 APLLEVLD 213 (395)
Q Consensus 206 l~~L~~L~ 213 (395)
+|+|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55555554
No 68
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.16 E-value=0.0035 Score=72.31 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=61.7
Q ss_pred EccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCccccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 044913 189 DLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEGFLYENNLELCGVGFSALKTCSASSNINPSRPEPYG 268 (395)
Q Consensus 189 ~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (395)
||++|+|+...+..|..+++|+.|+|++|+| .|+|.+.||..|..........+....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw----------------------~CDC~L~WL~~WL~~~~v~v~~~~~i~ 58 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF----------------------ECDCGLARLPRWAEEKGVKVRQPEAAL 58 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc----------------------ccccccHHHHHHHHhcCccccCCcccC
Confidence 5778888866667788888899998877766 599999999999987766666667888
Q ss_pred CCCCCCCCCCCCCcCCC--CCCCC
Q 044913 269 AATTHSTRNIPETANVN--LPCNQ 290 (395)
Q Consensus 269 ~~~~~~~~~~~~~~~~~--~~~~~ 290 (395)
|..|...++.+...... ..|..
T Consensus 59 CasP~~LrG~~L~~l~~~d~~C~~ 82 (2740)
T TIGR00864 59 CAGPGALAGQPLLGIPLLDSGCDE 82 (2740)
T ss_pred CCCChHHCCCCcccCCcccCCCCC
Confidence 99999877777655433 33653
No 69
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=94.90 E-value=0.016 Score=36.01 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=15.1
Q ss_pred CCcceEEehhHHHHHHHHHHHHHHH-HHHhhc
Q 044913 299 SHQASVVAGIIVVVVALSAIGILAF-TQYRRR 329 (395)
Q Consensus 299 ~~~~~i~~~vv~~v~~~~~~~~~~~-~~~rrr 329 (395)
.....+..+|++.+.+++++.++++ +||||+
T Consensus 8 ~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 8 SNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred CceEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 3445566666655544444443333 344443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.0098 Score=32.08 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=7.8
Q ss_pred CCEEEccCCCCCCCCCCCC
Q 044913 113 LSDLYLNVNNLSGDIPPEI 131 (395)
Q Consensus 113 L~~L~L~~n~l~~~~p~~~ 131 (395)
|++|||++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 71
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=94.78 E-value=0.026 Score=34.42 Aligned_cols=28 Identities=7% Similarity=0.249 Sum_probs=11.4
Q ss_pred eEEehhHHHHHHHHHHHHHHHHHHhhcc
Q 044913 303 SVVAGIIVVVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~~~~~~rrrk 330 (395)
.++++|++++++++++.+...++|||++
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3444444444443333333334444433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.88 E-value=0.026 Score=30.37 Aligned_cols=12 Identities=58% Similarity=0.465 Sum_probs=5.0
Q ss_pred CCEEEccCCCCC
Q 044913 185 LMRLDLSFNHLF 196 (395)
Q Consensus 185 L~~L~L~~N~l~ 196 (395)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.61 E-value=0.00095 Score=58.73 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=42.7
Q ss_pred CCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCE
Q 044913 108 ANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMR 187 (395)
Q Consensus 108 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 187 (395)
..+...+.||++.|++. .+...|+-++.|..|+++.|.+. ..|..++++..+..+++..|.++ ..|.+++..+.++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33444444444444443 33334444444555555555444 44444555555555555555554 45555555566666
Q ss_pred EEccCCCCC
Q 044913 188 LDLSFNHLF 196 (395)
Q Consensus 188 L~L~~N~l~ 196 (395)
+++..|.++
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 665555544
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.57 E-value=0.0016 Score=57.42 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=43.7
Q ss_pred cCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCE
Q 044913 84 AGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSV 163 (395)
Q Consensus 84 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 163 (395)
..+...+.||++.|++. ..-..|+-++.|..|+++.|.+. .+|..++++..++.+++..|..+ ..|.+++.++.++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33444444555544443 22333444445555555555555 55555555555555555555554 45555555555555
Q ss_pred EeccCccC
Q 044913 164 LALQSNQL 171 (395)
Q Consensus 164 L~L~~n~l 171 (395)
+++-.|.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 55555554
No 75
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=92.37 E-value=0.11 Score=41.28 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 044913 312 VVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk~~ 332 (395)
++.+++++++++++.||+++|
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 333333334444444444444
No 76
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=92.32 E-value=0.31 Score=36.88 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCCCcceEEehhHHHHHHHHHHHHHHHHHHhhcccccCCCcc
Q 044913 297 SKSHQASVVAGIIVVVVALSAIGILAFTQYRRRKQKLGSSFN 338 (395)
Q Consensus 297 ~~~~~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~~~~~~~ 338 (395)
.....|.++++||++++++.++++++..|...+|....++..
T Consensus 12 ~~g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~ 53 (102)
T PF15176_consen 12 EGGRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHH 53 (102)
T ss_pred CCCcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccc
Confidence 336678888999988888888888887666555544444333
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.91 E-value=0.0015 Score=65.07 Aligned_cols=157 Identities=24% Similarity=0.225 Sum_probs=81.3
Q ss_pred EEEEEecCCCCCCcCC----ccccCCCCCcEEEccCCCCCCCCc----cccCCC-CCCCEEEccCCCCCCCC----CCCC
Q 044913 65 VANISLQGKGLNGKVS----PAIAGLKHLTGLYLHYNSLYGQIP----REIANL-TELSDLYLNVNNLSGDI----PPEI 131 (395)
Q Consensus 65 l~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l-~~L~~L~L~~n~l~~~~----p~~~ 131 (395)
+..++|.+|.+..... ..+..+.+|+.|++++|.+.+.-- ..+... ..|++|++..|.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6678888888875433 445667888888888888873311 122222 45566666666665432 2234
Q ss_pred CCCCCccEEEeecCCCCC----CCccccC----CCCCCCEEeccCccCCCC----CccccCCCCC-CCEEEccCCCCCCc
Q 044913 132 GYMGSLQVLQLCYNQLTG----SIPTQLG----SLRKLSVLALQSNQLTGA----IPANLGDLGM-LMRLDLSFNHLFGS 198 (395)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~----~~p~~l~----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~-L~~L~L~~N~l~~~ 198 (395)
.....++.++++.|.+.. .++..+. ...++++|.+.++.++.. +...+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445566666666666531 1122222 345566666666665521 1112223333 44455555555432
Q ss_pred ----chhhhcCC-CCCcEEEccCCCCCC
Q 044913 199 ----IPRKLADA-PLLEVLDIRNNTLSG 221 (395)
Q Consensus 199 ----~p~~l~~l-~~L~~L~l~~N~l~~ 221 (395)
....+..+ +.+++++++.|.++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 12223333 444555555555553
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.89 E-value=0.1 Score=26.11 Aligned_cols=11 Identities=45% Similarity=0.480 Sum_probs=3.5
Q ss_pred CCEEEccCCCC
Q 044913 113 LSDLYLNVNNL 123 (395)
Q Consensus 113 L~~L~L~~n~l 123 (395)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 79
>PF15102 TMEM154: TMEM154 protein family
Probab=91.41 E-value=0.46 Score=38.80 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhcccc
Q 044913 316 SAIGILAFTQYRRRKQK 332 (395)
Q Consensus 316 ~~~~~~~~~~~rrrk~~ 332 (395)
++++++.+.+|||||.|
T Consensus 72 Ll~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHheeEEeecccC
Confidence 33333333444444443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.92 E-value=0.0038 Score=62.18 Aligned_cols=158 Identities=27% Similarity=0.282 Sum_probs=103.3
Q ss_pred CEEEEEecCCCCCCcCCc----cccCC-CCCcEEEccCCCCCCC----CccccCCCCCCCEEEccCCCCCC----CCCCC
Q 044913 64 QVANISLQGKGLNGKVSP----AIAGL-KHLTGLYLHYNSLYGQ----IPREIANLTELSDLYLNVNNLSG----DIPPE 130 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~----~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~ 130 (395)
.+..|++++|.+...-.. .+... ..|++|++..|.++.. +...+.....++.++++.|.+.. .++..
T Consensus 116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~ 195 (478)
T KOG4308|consen 116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA 195 (478)
T ss_pred cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence 577788888888743222 22222 5567788888877744 44566667888888888888741 12223
Q ss_pred C----CCCCCccEEEeecCCCCCCCc----cccCCCCC-CCEEeccCccCCCC----CccccCCC-CCCCEEEccCCCCC
Q 044913 131 I----GYMGSLQVLQLCYNQLTGSIP----TQLGSLRK-LSVLALQSNQLTGA----IPANLGDL-GMLMRLDLSFNHLF 196 (395)
Q Consensus 131 ~----~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~-L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~L~~N~l~ 196 (395)
+ ....++++|.++++.++...- ..+...+. +..+++.+|.+.+. +...+..+ ..+++++++.|.++
T Consensus 196 l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 196 LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 3 346788888888888763211 12334444 66688888887743 22334455 67788889998887
Q ss_pred Cc----chhhhcCCCCCcEEEccCCCCCC
Q 044913 197 GS----IPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 197 ~~----~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
.. +...+..++.++.+.+++|++..
T Consensus 276 ~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 276 EKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 53 34455667788888888888874
No 81
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=87.84 E-value=0.24 Score=40.68 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.4
Q ss_pred eEEehhHH
Q 044913 303 SVVAGIIV 310 (395)
Q Consensus 303 ~i~~~vv~ 310 (395)
.+++.||+
T Consensus 50 IVIGvVVG 57 (154)
T PF04478_consen 50 IVIGVVVG 57 (154)
T ss_pred EEEEEEec
Confidence 44444443
No 82
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=86.73 E-value=1.1 Score=39.01 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=11.9
Q ss_pred cceEEehhHHHHHHHHHHHH-HHHHHHhh
Q 044913 301 QASVVAGIIVVVVALSAIGI-LAFTQYRR 328 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~~~~~-~~~~~~rr 328 (395)
...|+++|++++++++++++ .++++|+|
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 34444555544444333333 33334344
No 83
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=86.66 E-value=0.46 Score=36.30 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=4.9
Q ss_pred eEEehhHHHHHHH
Q 044913 303 SVVAGIIVVVVAL 315 (395)
Q Consensus 303 ~i~~~vv~~v~~~ 315 (395)
.+.++++++++++
T Consensus 67 aiagi~vg~~~~v 79 (96)
T PTZ00382 67 AIAGISVAVVAVV 79 (96)
T ss_pred cEEEEEeehhhHH
Confidence 3444334333333
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.08 E-value=0.68 Score=25.71 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=7.5
Q ss_pred CCCCEEEccCCCCC
Q 044913 111 TELSDLYLNVNNLS 124 (395)
Q Consensus 111 ~~L~~L~L~~n~l~ 124 (395)
++|++|+|++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.08 E-value=0.68 Score=25.71 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=7.5
Q ss_pred CCCCEEEccCCCCC
Q 044913 111 TELSDLYLNVNNLS 124 (395)
Q Consensus 111 ~~L~~L~L~~n~l~ 124 (395)
++|++|+|++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 86
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=86.07 E-value=0.23 Score=45.89 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred ccccCCCCcceEeecCCCccc
Q 044913 351 GVYRKNGSPLISLEYGNGWDP 371 (395)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~ 371 (395)
..+++.|.+.+.-++.+.-||
T Consensus 184 ~~f~~KGiPvIF~dElee~kp 204 (290)
T PF05454_consen 184 KTFISKGIPVIFQDELEESKP 204 (290)
T ss_dssp ---------------------
T ss_pred HHHHhcCCceeccccccccCC
Confidence 345566677744444444344
No 87
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=85.92 E-value=0.87 Score=36.97 Aligned_cols=8 Identities=13% Similarity=0.468 Sum_probs=3.2
Q ss_pred Hhhccccc
Q 044913 326 YRRRKQKL 333 (395)
Q Consensus 326 ~rrrk~~~ 333 (395)
++++|||+
T Consensus 20 ~~~~rRR~ 27 (130)
T PF12273_consen 20 YCHNRRRR 27 (130)
T ss_pred HHHHHHHh
Confidence 33344443
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.61 E-value=0.87 Score=25.26 Aligned_cols=13 Identities=54% Similarity=0.475 Sum_probs=6.2
Q ss_pred CCCEEEccCCCCC
Q 044913 184 MLMRLDLSFNHLF 196 (395)
Q Consensus 184 ~L~~L~L~~N~l~ 196 (395)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.61 E-value=0.87 Score=25.26 Aligned_cols=13 Identities=54% Similarity=0.475 Sum_probs=6.2
Q ss_pred CCCEEEccCCCCC
Q 044913 184 MLMRLDLSFNHLF 196 (395)
Q Consensus 184 ~L~~L~L~~N~l~ 196 (395)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 90
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=84.57 E-value=0.28 Score=33.91 Aligned_cols=10 Identities=50% Similarity=0.816 Sum_probs=0.5
Q ss_pred HHHHhhcccc
Q 044913 323 FTQYRRRKQK 332 (395)
Q Consensus 323 ~~~~rrrk~~ 332 (395)
++.||.||+.
T Consensus 31 f~iyR~rkkd 40 (64)
T PF01034_consen 31 FLIYRMRKKD 40 (64)
T ss_dssp ------S---
T ss_pred HHHHHHHhcC
Confidence 3345544433
No 91
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.16 E-value=0.21 Score=49.72 Aligned_cols=110 Identities=23% Similarity=0.093 Sum_probs=52.0
Q ss_pred CCCCcEEEccCCCCCCC--CccccCCCCCCCEEEccCC-CCCCCCC----CCCCCCCCccEEEeecCC-CCCCCccccC-
Q 044913 86 LKHLTGLYLHYNSLYGQ--IPREIANLTELSDLYLNVN-NLSGDIP----PEIGYMGSLQVLQLCYNQ-LTGSIPTQLG- 156 (395)
Q Consensus 86 l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~- 156 (395)
.+.|+.|.+..+.-... .-......+.|+.|+++++ ......+ .....+.+|+.|+++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665533222 2234456667777777652 1111111 122334566666666655 3322222222
Q ss_pred CCCCCCEEeccCcc-CCC-CCccccCCCCCCCEEEccCCCC
Q 044913 157 SLRKLSVLALQSNQ-LTG-AIPANLGDLGMLMRLDLSFNHL 195 (395)
Q Consensus 157 ~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~N~l 195 (395)
.+++|++|.+.++. +++ .+-.....++.|+.|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 24566666655444 332 1222233455566666665544
No 92
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=83.73 E-value=0.53 Score=43.80 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=4.0
Q ss_pred HHHHHhhcc
Q 044913 322 AFTQYRRRK 330 (395)
Q Consensus 322 ~~~~~rrrk 330 (395)
.+++|||+|
T Consensus 277 LILRYRRKK 285 (299)
T PF02009_consen 277 LILRYRRKK 285 (299)
T ss_pred HHHHHHHHh
Confidence 334455543
No 93
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=83.72 E-value=0.64 Score=37.05 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=24.3
Q ss_pred CCcceEEehhHHHHHHHHHHHHHHHHHHhhccccc
Q 044913 299 SHQASVVAGIIVVVVALSAIGILAFTQYRRRKQKL 333 (395)
Q Consensus 299 ~~~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~~ 333 (395)
....+|+++|+++++++++++++++++.|||....
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 34567888899998889899999999988887554
No 94
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=83.58 E-value=2.1 Score=26.30 Aligned_cols=30 Identities=30% Similarity=0.239 Sum_probs=14.6
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHhhccccc
Q 044913 304 VVAGIIVVVVALSAIGILAFTQYRRRKQKL 333 (395)
Q Consensus 304 i~~~vv~~v~~~~~~~~~~~~~~rrrk~~~ 333 (395)
.+++++++++++++++++.+++-..+|+.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344444444554554444444445555544
No 95
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=82.10 E-value=13 Score=31.42 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-cccCCCcccCCCc
Q 044913 309 IVVVVALSAIGILAFTQYRRRK-QKLGSSFNAADSR 343 (395)
Q Consensus 309 v~~v~~~~~~~~~~~~~~rrrk-~~~~~~~~~~~~~ 343 (395)
|++.+..++++.+++..+|-|| +++.++++....+
T Consensus 100 Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~ 135 (163)
T PF06679_consen 100 VLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTR 135 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccceeecccCCC
Confidence 3333334444444444444443 3444566655444
No 96
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=81.18 E-value=0.67 Score=32.07 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=0.9
Q ss_pred ceEEehhHHHHHHHHHHHHHHHHHHhhc
Q 044913 302 ASVVAGIIVVVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~~~~rrr 329 (395)
+.|.++|++++++++++.++++++++|-
T Consensus 13 avIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp ------------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445555566777788888999988885
No 97
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=80.61 E-value=1.8 Score=37.19 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=7.8
Q ss_pred cceEEehhHHHHHHHH
Q 044913 301 QASVVAGIIVVVVALS 316 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~ 316 (395)
...++++|+++|++++
T Consensus 77 ~~~iivgvi~~Vi~Iv 92 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIV 92 (179)
T ss_pred eeeeeeehhhHHHHHH
Confidence 3445555555444443
No 98
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.35 E-value=0.36 Score=41.93 Aligned_cols=81 Identities=17% Similarity=0.092 Sum_probs=40.6
Q ss_pred CccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCC--CccccCCCCCCCEEEccCC-CCCCcchhhhcCCCCCcEE
Q 044913 136 SLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGA--IPANLGDLGMLMRLDLSFN-HLFGSIPRKLADAPLLEVL 212 (395)
Q Consensus 136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L 212 (395)
.++.++-++..+.++--+.+..++.++.|.+.++.--+. +...-+-.++|+.|+|++| +||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345555555554444444445555555555554432110 0000113456777777755 4554444556667777776
Q ss_pred EccC
Q 044913 213 DIRN 216 (395)
Q Consensus 213 ~l~~ 216 (395)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 99
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=79.24 E-value=1.1 Score=42.18 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 044913 312 VVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk~~ 332 (395)
+++++++++++|++.|||+++
T Consensus 281 La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 281 LAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHHhheeEeccccc
Confidence 344445555566555555433
No 100
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=79.17 E-value=0.9 Score=41.53 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=20.9
Q ss_pred CCCCcceEEehhHHHHHHHHHHHHHHHHHHhhccccc
Q 044913 297 SKSHQASVVAGIIVVVVALSAIGILAFTQYRRRKQKL 333 (395)
Q Consensus 297 ~~~~~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~~ 333 (395)
.+...+.+++++++++++++++++++++..|.+|+++
T Consensus 208 ~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k 244 (278)
T PF06697_consen 208 KRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKK 244 (278)
T ss_pred CcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3444556677767776666666555554444444333
No 101
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=79.15 E-value=0.76 Score=33.33 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=9.9
Q ss_pred ehhHHHHHHHHHHHHHHHHHHhhc
Q 044913 306 AGIIVVVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 306 ~~vv~~v~~~~~~~~~~~~~~rrr 329 (395)
++++++++++++++++++++.||+
T Consensus 4 ~~~~~g~~~ll~~v~~~~~~~rr~ 27 (75)
T PF14575_consen 4 ASIIVGVLLLLVLVIIVIVCFRRC 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTT-
T ss_pred ehHHHHHHHHHHhheeEEEEEeeE
Confidence 334444444444444444444443
No 102
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=78.84 E-value=0.56 Score=30.85 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=26.1
Q ss_pred CccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 044913 239 NLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTR 276 (395)
Q Consensus 239 n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (395)
|++.|+|.+.++..|... ...........|..|....
T Consensus 1 NP~~CdC~l~~~~~w~~~-~~~~~~~~~~~C~~P~~~~ 37 (51)
T smart00082 1 NPFICDCELRWLLRWLQA-NEHLQDPVSLRCASPSSLR 37 (51)
T ss_pred CCccCcCCchHHHHHHHh-CCccCCCCCCEeCCcHHHH
Confidence 688999999999999877 2223334567777666544
No 103
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=78.06 E-value=4.7 Score=25.03 Aligned_cols=12 Identities=50% Similarity=0.899 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhh
Q 044913 317 AIGILAFTQYRR 328 (395)
Q Consensus 317 ~~~~~~~~~~rr 328 (395)
.+++++.+.|||
T Consensus 21 ~i~iva~~iYRK 32 (43)
T PF08114_consen 21 GIGIVALFIYRK 32 (43)
T ss_pred HHHHHHHHHHHH
Confidence 333334434443
No 104
>PHA03265 envelope glycoprotein D; Provisional
Probab=77.65 E-value=1.7 Score=40.65 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 044913 312 VVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk~~ 332 (395)
++.+++++++.|+++||||..
T Consensus 358 i~glv~vg~il~~~~rr~k~~ 378 (402)
T PHA03265 358 IAGLVLVGVILYVCLRRKKEL 378 (402)
T ss_pred hhhhhhhhHHHHHHhhhhhhh
Confidence 444555666666666666543
No 105
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.35 E-value=0.37 Score=26.26 Aligned_cols=14 Identities=43% Similarity=0.368 Sum_probs=6.1
Q ss_pred CCCCEEEccCCCCC
Q 044913 183 GMLMRLDLSFNHLF 196 (395)
Q Consensus 183 ~~L~~L~L~~N~l~ 196 (395)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 106
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=77.09 E-value=5.3 Score=34.83 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=14.5
Q ss_pred eEEehhHHH-HHHHHHHHHHHHHHHhhcc
Q 044913 303 SVVAGIIVV-VVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 303 ~i~~~vv~~-v~~~~~~~~~~~~~~rrrk 330 (395)
.+|+.|+.+ +++++++++.+|+++.||.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 444444444 4555555555565555554
No 107
>PF15102 TMEM154: TMEM154 protein family
Probab=77.08 E-value=4.9 Score=32.95 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=21.3
Q ss_pred EehhHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 044913 305 VAGIIVVVVALSAIGILAFTQYRRRKQKLGSS 336 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~~~~~rrrk~~~~~~ 336 (395)
+..|++..++++++.+++++...+.|||+.+.
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 44444455667777888877777777766654
No 108
>PTZ00370 STEVOR; Provisional
Probab=76.88 E-value=2.3 Score=38.82 Aligned_cols=7 Identities=71% Similarity=0.952 Sum_probs=3.3
Q ss_pred HHHhhcc
Q 044913 324 TQYRRRK 330 (395)
Q Consensus 324 ~~~rrrk 330 (395)
|.|||||
T Consensus 277 wlyrrRK 283 (296)
T PTZ00370 277 WLYRRRK 283 (296)
T ss_pred HHHHhhc
Confidence 4455543
No 109
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=76.39 E-value=1 Score=37.04 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=13.5
Q ss_pred CCCCcceEEehhHHHHHHH
Q 044913 297 SKSHQASVVAGIIVVVVAL 315 (395)
Q Consensus 297 ~~~~~~~i~~~vv~~v~~~ 315 (395)
.+...++++++|.+.++++
T Consensus 47 nknIVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLG 65 (154)
T ss_pred CccEEEEEEecccHHHHHH
Confidence 3456888888888876643
No 110
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=74.81 E-value=1.9 Score=26.73 Aligned_cols=31 Identities=13% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEehhHHHHHHHHHHHHHHHHHHhhcccc
Q 044913 302 ASVVAGIIVVVVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~ 332 (395)
..+++-++++++++.+++.++|..+..||+.
T Consensus 9 GVIlVF~lVglv~i~iva~~iYRKw~aRkr~ 39 (43)
T PF08114_consen 9 GVILVFCLVGLVGIGIVALFIYRKWQARKRA 39 (43)
T ss_pred CeeeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677778888888888766655543
No 111
>PTZ00046 rifin; Provisional
Probab=74.41 E-value=1.6 Score=41.44 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=5.0
Q ss_pred HHHHHhhccc
Q 044913 322 AFTQYRRRKQ 331 (395)
Q Consensus 322 ~~~~~rrrk~ 331 (395)
.+++|||+|+
T Consensus 336 LILRYRRKKK 345 (358)
T PTZ00046 336 LILRYRRKKK 345 (358)
T ss_pred HHHHhhhcch
Confidence 3345655544
No 112
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.33 E-value=8.3 Score=26.55 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=22.7
Q ss_pred CCcceEEehhHHHHHHHHHHHHHHHHHHhhc
Q 044913 299 SHQASVVAGIIVVVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 299 ~~~~~i~~~vv~~v~~~~~~~~~~~~~~rrr 329 (395)
.+...|+..+++.++++++++-.+++.|.++
T Consensus 10 lnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred CCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677777778888888888777777665
No 113
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=73.55 E-value=1.7 Score=41.08 Aligned_cols=9 Identities=44% Similarity=0.955 Sum_probs=4.7
Q ss_pred HHHHhhccc
Q 044913 323 FTQYRRRKQ 331 (395)
Q Consensus 323 ~~~~rrrk~ 331 (395)
+++|||+|+
T Consensus 332 ILRYRRKKK 340 (353)
T TIGR01477 332 ILRYRRKKK 340 (353)
T ss_pred HHHhhhcch
Confidence 345665544
No 114
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=71.15 E-value=5.2 Score=28.99 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=15.4
Q ss_pred eEEehhHHH-HHHHHHHHHHHHHHHhhcccc
Q 044913 303 SVVAGIIVV-VVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 303 ~i~~~vv~~-v~~~~~~~~~~~~~~rrrk~~ 332 (395)
.++++++++ +++.++++..+|++-|.|+++
T Consensus 34 g~LaGiV~~D~vlTLLIv~~vy~car~r~r~ 64 (79)
T PF07213_consen 34 GLLAGIVAADAVLTLLIVLVVYYCARPRRRP 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 344555554 455555555555555544433
No 115
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=71.14 E-value=7 Score=39.85 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=15.8
Q ss_pred CcceEEehhHHHHHHHHHHHHHHHHHHhh
Q 044913 300 HQASVVAGIIVVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 300 ~~~~i~~~vv~~v~~~~~~~~~~~~~~rr 328 (395)
...+|+++|++.++++++++++++++.+|
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCR 295 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCR 295 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhc
Confidence 34566666666555555555555544444
No 116
>PF15050 SCIMP: SCIMP protein
Probab=70.30 E-value=3 Score=32.65 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 044913 316 SAIGILAFTQYR 327 (395)
Q Consensus 316 ~~~~~~~~~~~r 327 (395)
+.++++.|+.+|
T Consensus 21 ~~lglIlyCvcR 32 (133)
T PF15050_consen 21 VVLGLILYCVCR 32 (133)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 117
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.88 E-value=1.6 Score=43.35 Aligned_cols=113 Identities=22% Similarity=0.078 Sum_probs=73.1
Q ss_pred CCCCCCCEEEccCCCCCCC--CCCCCCCCCCccEEEeecC-CCCCCC----ccccCCCCCCCEEeccCcc-CCCCCcccc
Q 044913 108 ANLTELSDLYLNVNNLSGD--IPPEIGYMGSLQVLQLCYN-QLTGSI----PTQLGSLRKLSVLALQSNQ-LTGAIPANL 179 (395)
Q Consensus 108 ~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~n-~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~p~~~ 179 (395)
...+.|+.|.+..+.-... .-......+.|+.|+++++ ...... ......+.+|+.++++... +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3468888888887643322 2234566789999999873 211111 1233556889999999887 554322222
Q ss_pred C-CCCCCCEEEccCCC-CCCc-chhhhcCCCCCcEEEccCCCCC
Q 044913 180 G-DLGMLMRLDLSFNH-LFGS-IPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 180 ~-~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
. .+++|+.|.+.++. +++. +-.....++.|++|+++.+...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2 37799999988777 5643 3334466888999999987654
No 118
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.10 E-value=4.3 Score=22.78 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=8.2
Q ss_pred CCCCEEEccCCCCC
Q 044913 111 TELSDLYLNVNNLS 124 (395)
Q Consensus 111 ~~L~~L~L~~n~l~ 124 (395)
.+|++|+|+.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666654
No 119
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=68.97 E-value=1.6 Score=43.21 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHH
Q 044913 305 VAGIIVVVVALSAIGILA 322 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~ 322 (395)
++++++++++++++++++
T Consensus 355 l~vVlgvavlivVv~viv 372 (439)
T PF02480_consen 355 LGVVLGVAVLIVVVGVIV 372 (439)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333333
No 120
>PF15069 FAM163: FAM163 family
Probab=68.51 E-value=16 Score=29.77 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=10.9
Q ss_pred eEEehhHHHHHHHHHHHHHHHH
Q 044913 303 SVVAGIIVVVVALSAIGILAFT 324 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~~~~ 324 (395)
+|.++|.+.|+++.++++++++
T Consensus 7 VItGgILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYC 28 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555543
No 121
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.37 E-value=4 Score=22.93 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=8.8
Q ss_pred CCCEEEccCCCCCCCCC
Q 044913 112 ELSDLYLNVNNLSGDIP 128 (395)
Q Consensus 112 ~L~~L~L~~n~l~~~~p 128 (395)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555566666655 444
No 122
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=66.83 E-value=6.4 Score=36.00 Aligned_cols=7 Identities=71% Similarity=0.952 Sum_probs=3.2
Q ss_pred HHHhhcc
Q 044913 324 TQYRRRK 330 (395)
Q Consensus 324 ~~~rrrk 330 (395)
|.|||||
T Consensus 281 WlyrrRK 287 (295)
T TIGR01478 281 WLYRRRK 287 (295)
T ss_pred HHHHhhc
Confidence 4445443
No 123
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=66.40 E-value=22 Score=33.05 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=14.6
Q ss_pred eEEehhHHHHHHHHHHHHHHHHHHhhcc
Q 044913 303 SVVAGIIVVVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~~~~~~rrrk 330 (395)
.+++++++.+++++++++..++|||-+|
T Consensus 199 ~lv~Iv~~cvaG~aAliva~~cW~Rlqr 226 (341)
T PF06809_consen 199 TLVLIVVCCVAGAAALIVAGYCWYRLQR 226 (341)
T ss_pred eeehhHHHHHHHHHHHHHhhheEEEecc
Confidence 3444444445555555566666665543
No 124
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=65.70 E-value=10 Score=26.47 Aligned_cols=25 Identities=24% Similarity=0.693 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 044913 309 IVVVVALSAIGILAFTQYRRRKQKL 333 (395)
Q Consensus 309 v~~v~~~~~~~~~~~~~~rrrk~~~ 333 (395)
+.+++.+++++++++-.|+|++...
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccC
Confidence 3344445556666676777765443
No 125
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.65 E-value=0.68 Score=40.30 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=25.2
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCC
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNS 98 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 98 (395)
.|+.++-++..|..+--+.+.+++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 47788888877776666667777777777776653
No 126
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.44 E-value=6 Score=22.43 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=7.3
Q ss_pred CCCEEEccCCCCC
Q 044913 112 ELSDLYLNVNNLS 124 (395)
Q Consensus 112 ~L~~L~L~~n~l~ 124 (395)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555566655554
No 127
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=62.86 E-value=16 Score=33.83 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=4.6
Q ss_pred CCCEEEEEe
Q 044913 62 KGQVANISL 70 (395)
Q Consensus 62 ~~~l~~L~L 70 (395)
.|.|..|..
T Consensus 36 ~G~V~~l~~ 44 (281)
T PF12768_consen 36 SGTVTDLQW 44 (281)
T ss_pred eEEEEEEEE
Confidence 345555554
No 128
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=62.46 E-value=9.9 Score=24.88 Aligned_cols=8 Identities=38% Similarity=0.572 Sum_probs=3.1
Q ss_pred HHHHHhhc
Q 044913 322 AFTQYRRR 329 (395)
Q Consensus 322 ~~~~~rrr 329 (395)
+++.|+++
T Consensus 26 ~~w~~~~~ 33 (49)
T PF05545_consen 26 VIWAYRPR 33 (49)
T ss_pred HHHHHccc
Confidence 33344433
No 129
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=60.65 E-value=7.3 Score=35.62 Aligned_cols=24 Identities=8% Similarity=-0.108 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhcccccCCCc
Q 044913 314 ALSAIGILAFTQYRRRKQKLGSSF 337 (395)
Q Consensus 314 ~~~~~~~~~~~~~rrrk~~~~~~~ 337 (395)
++++++++++++.+-+|||+....
T Consensus 268 llil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 268 LIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc
Confidence 334444555556666777776553
No 130
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=60.55 E-value=2.6 Score=32.75 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=0.0
Q ss_pred EeecCCCccc
Q 044913 362 SLEYGNGWDP 371 (395)
Q Consensus 362 ~~~~~~~~~~ 371 (395)
++++.+-.+|
T Consensus 86 ~~qe~~~~~p 95 (118)
T PF14991_consen 86 PFQEFNCFEP 95 (118)
T ss_dssp ----------
T ss_pred ccccccCCCc
Confidence 4444444344
No 131
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=60.53 E-value=7.4 Score=31.57 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 044913 312 VVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk 330 (395)
++.++++.+++++|-+|||
T Consensus 39 vVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 39 VVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 3333444444444444443
No 132
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=59.74 E-value=12 Score=31.75 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=14.9
Q ss_pred ceEEehhHHHHHHHHHHHHHHHHHHhhcc
Q 044913 302 ASVVAGIIVVVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~~~~rrrk 330 (395)
..+|.+||.+|++.++-++..|+-|++||
T Consensus 114 ~g~IaGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 114 AGTIAGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555544444444455555565553
No 133
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=56.63 E-value=14 Score=32.37 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=24.7
Q ss_pred CCCCcceEEehhHHHHHHHHHHHHHHHHHHhh
Q 044913 297 SKSHQASVVAGIIVVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 297 ~~~~~~~i~~~vv~~v~~~~~~~~~~~~~~rr 328 (395)
......+++++++++|+++++++++-+++.+-
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~ 67 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCRQSP 67 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHhhcc
Confidence 34456788888888888888889889877443
No 134
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=55.83 E-value=19 Score=35.20 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 044913 312 VVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk 330 (395)
||+..+++|+.||+..|.|
T Consensus 378 vvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 378 VVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred HHHHHHHHHHhhheeeccc
Confidence 3444566666666555543
No 135
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=54.50 E-value=44 Score=29.54 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 044913 312 VVALSAIGILAFTQYRRR 329 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrr 329 (395)
|+.+.++.++.+++..||
T Consensus 199 Vitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 199 VITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333333444444433443
No 136
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=53.12 E-value=19 Score=29.37 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=4.4
Q ss_pred eEEehhHHHHH
Q 044913 303 SVVAGIIVVVV 313 (395)
Q Consensus 303 ~i~~~vv~~v~ 313 (395)
+|++++|+++.
T Consensus 65 GIVfgiVfimg 75 (155)
T PF10873_consen 65 GIVFGIVFIMG 75 (155)
T ss_pred eeehhhHHHHH
Confidence 34444444333
No 137
>PHA03049 IMV membrane protein; Provisional
Probab=52.40 E-value=22 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.665 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 044913 310 VVVVALSAIGILAFTQYRRRKQ 331 (395)
Q Consensus 310 ~~v~~~~~~~~~~~~~~rrrk~ 331 (395)
.+++.+++++++++-.|+|++.
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3344445555666666766543
No 138
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=52.20 E-value=4.7 Score=39.90 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=0.0
Q ss_pred CcceEEehhHHHHHHHHHHHHHHHHHHhhccccc
Q 044913 300 HQASVVAGIIVVVVALSAIGILAFTQYRRRKQKL 333 (395)
Q Consensus 300 ~~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~~ 333 (395)
...++++++++++++++++++++++++|||+++.
T Consensus 353 ~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ----------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 4556676777776667777777776666555443
No 139
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=51.60 E-value=11 Score=28.70 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=9.7
Q ss_pred CCcceEEehhHHHHHHHHH
Q 044913 299 SHQASVVAGIIVVVVALSA 317 (395)
Q Consensus 299 ~~~~~i~~~vv~~v~~~~~ 317 (395)
.....+.+++++++.+++.
T Consensus 66 gaiagi~vg~~~~v~~lv~ 84 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVG 84 (96)
T ss_pred ccEEEEEeehhhHHHHHHH
Confidence 3455555555555444443
No 140
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=51.16 E-value=7.4 Score=16.43 Aligned_cols=7 Identities=43% Similarity=1.645 Sum_probs=5.1
Q ss_pred cCCCccc
Q 044913 365 YGNGWDP 371 (395)
Q Consensus 365 ~~~~~~~ 371 (395)
|+.||.|
T Consensus 3 wS~~w~P 9 (10)
T PF00446_consen 3 WSHGWKP 9 (10)
T ss_pred cccccCC
Confidence 5778876
No 141
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=50.10 E-value=20 Score=26.50 Aligned_cols=11 Identities=45% Similarity=0.661 Sum_probs=4.3
Q ss_pred HHHHHHHhhcc
Q 044913 320 ILAFTQYRRRK 330 (395)
Q Consensus 320 ~~~~~~~rrrk 330 (395)
++.++|+++||
T Consensus 49 ilwfvCC~kRk 59 (94)
T PF05393_consen 49 ILWFVCCKKRK 59 (94)
T ss_pred HHHHHHHHHhh
Confidence 33333444333
No 142
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=47.73 E-value=60 Score=21.45 Aligned_cols=11 Identities=9% Similarity=0.443 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 044913 312 VVALSAIGILA 322 (395)
Q Consensus 312 v~~~~~~~~~~ 322 (395)
+++++++++.+
T Consensus 10 ~iv~~lLg~~I 20 (50)
T PF12606_consen 10 FIVMGLLGLSI 20 (50)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 143
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=47.37 E-value=30 Score=28.22 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=12.9
Q ss_pred ceEEehhHHHHHHHHHHHHHHHHH
Q 044913 302 ASVVAGIIVVVVALSAIGILAFTQ 325 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~~~ 325 (395)
..|.++|.++|+++.+++.++..+
T Consensus 61 tAIaGIVfgiVfimgvva~i~icv 84 (155)
T PF10873_consen 61 TAIAGIVFGIVFIMGVVAGIAICV 84 (155)
T ss_pred ceeeeeehhhHHHHHHHHHHHHHH
Confidence 444444445566666666555543
No 144
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=46.50 E-value=10 Score=28.39 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 044913 312 VVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk 330 (395)
++++++++.++++++.|+|
T Consensus 51 ~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 51 LILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhHHHHHHHHHHhhhhhh
Confidence 3333333334444444443
No 145
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=46.15 E-value=1.5e+02 Score=29.59 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccC
Q 044913 310 VVVVALSAIGILAFTQYRRRKQKLG 334 (395)
Q Consensus 310 ~~v~~~~~~~~~~~~~~rrrk~~~~ 334 (395)
.++.+++++++.+|+.||++|..+.
T Consensus 162 ~~v~~l~~lvi~~~~~~r~~k~~~~ 186 (534)
T KOG3653|consen 162 LLVSLLAALVILAFLGYRQRKNARE 186 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3455566666677777777665543
No 146
>PHA02902 putative IMV membrane protein; Provisional
Probab=45.51 E-value=29 Score=23.97 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 044913 311 VVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 311 ~v~~~~~~~~~~~~~~rrrk 330 (395)
..+.+++++.+++..|||-|
T Consensus 9 ~~v~v~Ivclliya~YrR~k 28 (70)
T PHA02902 9 LAVIVIIFCLLIYAAYKRYK 28 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444445555566676654
No 147
>PF15050 SCIMP: SCIMP protein
Probab=45.21 E-value=14 Score=29.03 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=20.0
Q ss_pred ceEEehhHHHHHHHHHHHHHHHHHHhhcc
Q 044913 302 ASVVAGIIVVVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~~~~rrrk 330 (395)
+++.++|+++.+++.++.++++.|..|+-
T Consensus 10 iiLAVaII~vS~~lglIlyCvcR~~lRqG 38 (133)
T PF15050_consen 10 IILAVAIILVSVVLGLILYCVCRWQLRQG 38 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445566666778888888888877753
No 148
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=45.14 E-value=7.1 Score=37.19 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=0.0
Q ss_pred eEEehhHHHHHHHHHHHHH
Q 044913 303 SVVAGIIVVVVALSAIGIL 321 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~ 321 (395)
.-|.+|+++++++.++.++
T Consensus 10 LTITgIcvaLlVVGi~Cvv 28 (404)
T PF02158_consen 10 LTITGICVALLVVGIVCVV 28 (404)
T ss_dssp -------------------
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 3344555444444433333
No 149
>PF14979 TMEM52: Transmembrane 52
Probab=44.71 E-value=64 Score=26.47 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=8.5
Q ss_pred eEEehhHHHHHHHHHHHHH
Q 044913 303 SVVAGIIVVVVALSAIGIL 321 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~ 321 (395)
..|+.+++++++++++++.
T Consensus 20 WyIwLill~~~llLLCG~t 38 (154)
T PF14979_consen 20 WYIWLILLIGFLLLLCGLT 38 (154)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 150
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=44.58 E-value=15 Score=38.68 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=12.5
Q ss_pred eEEehhHHHHHHHHHHHHHHHHHHhhc
Q 044913 303 SVVAGIIVVVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~~~~~~rrr 329 (395)
.++.+|.+++++++++.+++++||+||
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344455554444444444444444444
No 151
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=42.92 E-value=27 Score=30.17 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=9.5
Q ss_pred ehhHHHHHHHHHHHHHHHHHH
Q 044913 306 AGIIVVVVALSAIGILAFTQY 326 (395)
Q Consensus 306 ~~vv~~v~~~~~~~~~~~~~~ 326 (395)
++.|++++.+.+++++.|.+|
T Consensus 164 iGGIVL~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 164 IGGIVLTLGVLAIIFFLYKFC 184 (186)
T ss_pred hhHHHHHHHHHHHHHHHhhhc
Confidence 333334444444455554444
No 152
>PF15069 FAM163: FAM163 family
Probab=42.00 E-value=32 Score=28.11 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=20.9
Q ss_pred eEEehhHHHHHHHHHHHHHHHHHHhhcc
Q 044913 303 SVVAGIIVVVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~~~~~~rrrk 330 (395)
+-+++.-+++++++++.|+++++|.|-+
T Consensus 4 GTvVItGgILAtVILLcIIaVLCYCRLQ 31 (143)
T PF15069_consen 4 GTVVITGGILATVILLCIIAVLCYCRLQ 31 (143)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHhhH
Confidence 4455555667788888899999999953
No 153
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.51 E-value=15 Score=37.03 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=14.9
Q ss_pred CCccEEEeecCCCCCCCc--cccCCCCCCCEEeccCc
Q 044913 135 GSLQVLQLCYNQLTGSIP--TQLGSLRKLSVLALQSN 169 (395)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n 169 (395)
+.+..++|++|++..... .--..-++|.+|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 444555555555442110 00112245555555555
No 154
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=40.10 E-value=45 Score=28.49 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=6.9
Q ss_pred ehhHHHHHHHHHHHHH
Q 044913 306 AGIIVVVVALSAIGIL 321 (395)
Q Consensus 306 ~~vv~~v~~~~~~~~~ 321 (395)
.+++++++++++++++
T Consensus 79 ~iivgvi~~Vi~Iv~~ 94 (179)
T PF13908_consen 79 GIIVGVICGVIAIVVL 94 (179)
T ss_pred eeeeehhhHHHHHHHh
Confidence 3333344445555433
No 155
>PHA03105 EEV glycoprotein; Provisional
Probab=39.61 E-value=47 Score=27.52 Aligned_cols=9 Identities=33% Similarity=0.899 Sum_probs=5.8
Q ss_pred hhhhhcccc
Q 044913 382 AQEVFQSFR 390 (395)
Q Consensus 382 ~~~~~~~~~ 390 (395)
|+|++.+||
T Consensus 77 sgEiYeNfr 85 (188)
T PHA03105 77 SGEIYANFR 85 (188)
T ss_pred cchHHhhhh
Confidence 446777776
No 156
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=39.21 E-value=23 Score=28.27 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 044913 312 VVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk~~ 332 (395)
.++++.+++.++.|+||||-.
T Consensus 112 ~i~is~~~~~~yr~~r~~~~~ 132 (139)
T PHA03099 112 GIIITCCLLSVYRFTRRTKLP 132 (139)
T ss_pred HHHHHHHHHhhheeeecccCc
Confidence 344455566778999988754
No 157
>PHA03265 envelope glycoprotein D; Provisional
Probab=38.79 E-value=69 Score=30.37 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=26.8
Q ss_pred CCCcceEEehhHHHHHHHHHHHHHHHHHHhhccccc
Q 044913 298 KSHQASVVAGIIVVVVALSAIGILAFTQYRRRKQKL 333 (395)
Q Consensus 298 ~~~~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~~ 333 (395)
.....+++++.+++++++-++.++++.+++-.+++.
T Consensus 347 ~~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k~~ 382 (402)
T PHA03265 347 STFVGISVGLGIAGLVLVGVILYVCLRRKKELKKSA 382 (402)
T ss_pred CcccceEEccchhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 345567777788888888888899998887655543
No 158
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=38.04 E-value=11 Score=36.04 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=0.0
Q ss_pred EEehhHHHHHHHHHHHHHHHH-HHhhccc
Q 044913 304 VVAGIIVVVVALSAIGILAFT-QYRRRKQ 331 (395)
Q Consensus 304 i~~~vv~~v~~~~~~~~~~~~-~~rrrk~ 331 (395)
-|..|.+++++++++++++++ .|.|-|+
T Consensus 8 rVLTITgIcvaLlVVGi~Cvv~aYCKTKK 36 (404)
T PF02158_consen 8 RVLTITGICVALLVVGIVCVVDAYCKTKK 36 (404)
T ss_dssp -----------------------------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 356677888999999999999 7776443
No 159
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=37.72 E-value=18 Score=35.27 Aligned_cols=132 Identities=17% Similarity=0.069 Sum_probs=58.0
Q ss_pred CCCCcEEEccCCCCCCC--CccccCCCCCCCEEEccCCC-CCCCCCCCC-CCCCCccEEEeecCCCCC--CCccccCCCC
Q 044913 86 LKHLTGLYLHYNSLYGQ--IPREIANLTELSDLYLNVNN-LSGDIPPEI-GYMGSLQVLQLCYNQLTG--SIPTQLGSLR 159 (395)
Q Consensus 86 l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~ 159 (395)
...|+.|+.+++.-.+- +..-..+.++|+.|.+..++ ++..--..+ .+.+.|+.+++..+.... .+..--.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44555555555432111 11112344566666665554 221111111 234555555555543221 1111123456
Q ss_pred CCCEEeccCccCCCC-----CccccCCCCCCCEEEccCCCCCC-cchhhhcCCCCCcEEEccCC
Q 044913 160 KLSVLALQSNQLTGA-----IPANLGDLGMLMRLDLSFNHLFG-SIPRKLADAPLLEVLDIRNN 217 (395)
Q Consensus 160 ~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~l~~N 217 (395)
.|+.+.++++.+... +...-..+..|..+.|.++..+. ..-..+..+++|+.+++-+.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 666666665543211 11222344556666666665542 22234455556666655544
No 160
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.87 E-value=18 Score=36.49 Aligned_cols=63 Identities=27% Similarity=0.234 Sum_probs=26.8
Q ss_pred CCCCCCEEEccCCCCCCCCCCCC----CCCCCccEEEeecCCCCCCCccccCC--CCCCCEEeccCccCCC
Q 044913 109 NLTELSDLYLNVNNLSGDIPPEI----GYMGSLQVLQLCYNQLTGSIPTQLGS--LRKLSVLALQSNQLTG 173 (395)
Q Consensus 109 ~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~ 173 (395)
+.+.+..+.|++|++... +.+ ...++|.+|+|++|...-.....+.. ...|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 344555555555555421 111 12245566666665211111111211 1235566666666543
No 161
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=36.18 E-value=71 Score=24.89 Aligned_cols=8 Identities=25% Similarity=0.107 Sum_probs=3.3
Q ss_pred HHHHHhhc
Q 044913 322 AFTQYRRR 329 (395)
Q Consensus 322 ~~~~~rrr 329 (395)
++-...+|
T Consensus 16 ~asl~~wr 23 (107)
T PF15330_consen 16 AASLLAWR 23 (107)
T ss_pred HHHHHHHH
Confidence 33344444
No 162
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=35.94 E-value=55 Score=21.19 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 044913 310 VVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 310 ~~v~~~~~~~~~~~~~~rr 328 (395)
++.++.+++++-+|.|.||
T Consensus 26 g~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 26 GGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555544
No 163
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.49 E-value=18 Score=27.47 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=7.3
Q ss_pred CcchhHHHHHHH
Q 044913 1 MGFKFFPFSLLV 12 (395)
Q Consensus 1 m~~~~~~~~~~~ 12 (395)
||+..++|+.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 887766554443
No 164
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=34.65 E-value=45 Score=26.08 Aligned_cols=19 Identities=21% Similarity=0.032 Sum_probs=8.3
Q ss_pred EehhHHHHHHHHHHHHHHH
Q 044913 305 VAGIIVVVVALSAIGILAF 323 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~~ 323 (395)
+.+|++++.++++.++.+.
T Consensus 86 Lp~VIGGLcaL~LaamGA~ 104 (126)
T PF03229_consen 86 LPLVIGGLCALTLAAMGAG 104 (126)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 3445554444444443333
No 165
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=34.43 E-value=11 Score=36.19 Aligned_cols=28 Identities=21% Similarity=0.435 Sum_probs=13.5
Q ss_pred cceEEehhHHHHHHHHHHHHHHHHHHhh
Q 044913 301 QASVVAGIIVVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~~~~~~~~~~~rr 328 (395)
...|+++|.+.+++++++.+.+|++.||
T Consensus 385 ~~~i~~avl~p~~il~~~~~~~~~~v~r 412 (436)
T PTZ00208 385 TAMIILAVLVPAIILAIIAVAFFIMVKR 412 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeee
Confidence 4455666665555544444433333333
No 166
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=33.63 E-value=1.2e+02 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=13.1
Q ss_pred ceEEehhHHHHHHHHHHHHHHHHHH
Q 044913 302 ASVVAGIIVVVVALSAIGILAFTQY 326 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~~~~ 326 (395)
..+++.+++.+++++.+++-++..+
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555555443
No 167
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=33.27 E-value=14 Score=34.28 Aligned_cols=12 Identities=50% Similarity=0.863 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhc
Q 044913 318 IGILAFTQYRRR 329 (395)
Q Consensus 318 ~~~~~~~~~rrr 329 (395)
+++++++|||||
T Consensus 162 A~iIa~icyrrk 173 (290)
T PF05454_consen 162 AGIIACICYRRK 173 (290)
T ss_dssp ------------
T ss_pred HHHHHHHhhhhh
Confidence 444444455544
No 168
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.91 E-value=21 Score=26.22 Aligned_cols=6 Identities=33% Similarity=1.187 Sum_probs=0.0
Q ss_pred HHHHhh
Q 044913 323 FTQYRR 328 (395)
Q Consensus 323 ~~~~rr 328 (395)
+.-||+
T Consensus 27 ~ieYrk 32 (81)
T PF00558_consen 27 YIEYRK 32 (81)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333443
No 169
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=32.35 E-value=40 Score=32.53 Aligned_cols=20 Identities=20% Similarity=0.614 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 044913 311 VVVALSAIGILAFTQYRRRKQ 331 (395)
Q Consensus 311 ~v~~~~~~~~~~~~~~rrrk~ 331 (395)
.+++++.++ ..+++++||+.
T Consensus 309 li~vl~~~~-~~~~~~~~~~~ 328 (361)
T PF12259_consen 309 LIIVLISLA-WLYRTFRRRQL 328 (361)
T ss_pred HHHHHHHHH-hheeehHHHHh
Confidence 333333344 45544555443
No 170
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=32.35 E-value=91 Score=23.85 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q 044913 307 GIIVVVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 307 ~vv~~v~~~~~~~~~~~~~~rrrk 330 (395)
.+++++.+++++++=+-+||+.+-
T Consensus 25 ~~al~~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 25 VTALVTSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 333334444555555555665543
No 171
>PHA03286 envelope glycoprotein E; Provisional
Probab=31.90 E-value=38 Score=33.17 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=5.2
Q ss_pred cchhHHHHHHH
Q 044913 2 GFKFFPFSLLV 12 (395)
Q Consensus 2 ~~~~~~~~~~~ 12 (395)
++++.++.++.
T Consensus 3 ~~~~~~~~l~~ 13 (492)
T PHA03286 3 ACRLSILILLL 13 (492)
T ss_pred chhhhHHHHHH
Confidence 34555554443
No 172
>PF14828 Amnionless: Amnionless
Probab=31.77 E-value=82 Score=31.28 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCCeeecC
Q 044913 40 LSSWTINGDPCDGSFEGIACN 60 (395)
Q Consensus 40 l~~W~~~~~~c~~~~~gv~c~ 60 (395)
...|..+.-|| .=..|..+
T Consensus 13 ~~NW~~~~~Pc--~~d~v~Fp 31 (437)
T PF14828_consen 13 ASNWDQGRVPC--AGDTVVFP 31 (437)
T ss_pred hhhccCCCCCC--CCCeEEcC
Confidence 56787778899 34455544
No 173
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=31.70 E-value=1.1e+02 Score=29.30 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=10.3
Q ss_pred eEEehhHHHHHHHHHHHHHHHHH
Q 044913 303 SVVAGIIVVVVALSAIGILAFTQ 325 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~~~~~ 325 (395)
+++++..+.+..++++.|++|+|
T Consensus 15 ivlwgsLaav~~f~lis~LifLC 37 (428)
T PF15347_consen 15 IVLWGSLAAVTTFLLISFLIFLC 37 (428)
T ss_pred EEeehHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444555444
No 174
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.63 E-value=28 Score=35.88 Aligned_cols=14 Identities=36% Similarity=0.271 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhc
Q 044913 316 SAIGILAFTQYRRR 329 (395)
Q Consensus 316 ~~~~~~~~~~~rrr 329 (395)
+++++++.+++||+
T Consensus 13 ~i~~~~~~~~~rr~ 26 (569)
T PRK04778 13 IIIAYLAGLILRKR 26 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333445544
No 175
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=31.13 E-value=16 Score=33.29 Aligned_cols=17 Identities=47% Similarity=0.770 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 044913 312 VVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk 330 (395)
|+++++++-+. |||||+
T Consensus 236 ILVLLaVGGLL--fYr~rr 252 (285)
T PF05337_consen 236 ILVLLAVGGLL--FYRRRR 252 (285)
T ss_dssp -------------------
T ss_pred hhhhhhcccee--eecccc
Confidence 33334444333 444443
No 176
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=30.70 E-value=52 Score=33.75 Aligned_cols=6 Identities=33% Similarity=0.224 Sum_probs=3.3
Q ss_pred CCCCCC
Q 044913 40 LSSWTI 45 (395)
Q Consensus 40 l~~W~~ 45 (395)
-++|+.
T Consensus 44 SSs~dq 49 (807)
T KOG1094|consen 44 SSSFDQ 49 (807)
T ss_pred cccccc
Confidence 456754
No 177
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=29.43 E-value=83 Score=21.12 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhcc
Q 044913 315 LSAIGILAFTQYRRRK 330 (395)
Q Consensus 315 ~~~~~~~~~~~~rrrk 330 (395)
.++++++++.+++.+|
T Consensus 37 ~~~l~~~~~~~~~~~~ 52 (55)
T PF03988_consen 37 AALLAVVLALWYRSKR 52 (55)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3333344444444443
No 178
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=29.04 E-value=58 Score=26.78 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=8.5
Q ss_pred EEehhHHHHHHHHHHHHHHH
Q 044913 304 VVAGIIVVVVALSAIGILAF 323 (395)
Q Consensus 304 i~~~vv~~v~~~~~~~~~~~ 323 (395)
++.++.+.+++.++++++++
T Consensus 121 lilaisvtvv~~iliii~CL 140 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCL 140 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 179
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=28.95 E-value=27 Score=25.41 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=19.5
Q ss_pred CCCcceEEehhHHHHHHHHHHHHHHHHHHhhcccccCC
Q 044913 298 KSHQASVVAGIIVVVVALSAIGILAFTQYRRRKQKLGS 335 (395)
Q Consensus 298 ~~~~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~~~~ 335 (395)
...-++++.+=++..++++++++.+-..++|++++..+
T Consensus 33 ~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~~~~k 70 (79)
T PF07213_consen 33 PGLLAGIVAADAVLTLLIVLVVYYCARPRRRPTQEDDK 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCCE
Confidence 33344555554555455555555555555555555443
No 180
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=28.78 E-value=1.3e+02 Score=18.41 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=10.1
Q ss_pred ehhHHHHHHHHHHHHHHHHH
Q 044913 306 AGIIVVVVALSAIGILAFTQ 325 (395)
Q Consensus 306 ~~vv~~v~~~~~~~~~~~~~ 325 (395)
.++|.+.+.+.++++++..+
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay 26 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAY 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHHHHHH
Confidence 45555555555555544433
No 181
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=28.73 E-value=53 Score=36.44 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=11.0
Q ss_pred cceEEehhHHHHHHHHHHHHHHH
Q 044913 301 QASVVAGIIVVVVALSAIGILAF 323 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~~~~~~~~ 323 (395)
.++|+++++++++++++++++.|
T Consensus 978 ~wiIi~svl~GLLlL~llv~~Lw 1000 (1030)
T KOG3637|consen 978 LWIIILSVLGGLLLLALLVLLLW 1000 (1030)
T ss_pred eeeehHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444444
No 182
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=28.71 E-value=90 Score=32.95 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=13.4
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHhhc
Q 044913 304 VVAGIIVVVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 304 i~~~vv~~v~~~~~~~~~~~~~~rrr 329 (395)
..++|++.+++++.++.+++..+|||
T Consensus 846 t~~~i~g~i~iiv~LaAla~lLrRRr 871 (872)
T COG3889 846 TGGGICGPIVIIVGLAALALLLRRRR 871 (872)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhc
Confidence 34445555545555555555555554
No 183
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=28.37 E-value=1.1e+02 Score=22.83 Aligned_cols=8 Identities=38% Similarity=0.214 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 044913 318 IGILAFTQ 325 (395)
Q Consensus 318 ~~~~~~~~ 325 (395)
++.+++.|
T Consensus 50 ~~YL~y~~ 57 (91)
T PF01708_consen 50 CLYLAYTW 57 (91)
T ss_pred HHHHHHHH
Confidence 33344433
No 184
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=28.14 E-value=72 Score=19.32 Aligned_cols=19 Identities=16% Similarity=0.530 Sum_probs=9.2
Q ss_pred EehhHHHHHHHHHHHHHHH
Q 044913 305 VAGIIVVVVALSAIGILAF 323 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~~ 323 (395)
..++|.+.+.+.++++++-
T Consensus 6 L~GiVLGlipiTl~Glfva 24 (37)
T PRK00665 6 LCGIVLGLIPVTLAGLFVA 24 (37)
T ss_pred hhhHHHHhHHHHHHHHHHH
Confidence 3455555544455554443
No 185
>PRK09459 pspG phage shock protein G; Reviewed
Probab=27.86 E-value=1.3e+02 Score=21.67 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=7.8
Q ss_pred HHHHHHHhhcccccCC
Q 044913 320 ILAFTQYRRRKQKLGS 335 (395)
Q Consensus 320 ~~~~~~~rrrk~~~~~ 335 (395)
++++|.||..++.+.+
T Consensus 55 ~v~vW~~r~~~~~~~~ 70 (76)
T PRK09459 55 VVVVWVIRAIKAPKVP 70 (76)
T ss_pred HHHHHHHHHhhccccc
Confidence 3445556665444333
No 186
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=27.82 E-value=91 Score=20.07 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 044913 312 VVALSAIGILAFTQYRRR 329 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrr 329 (395)
.+++.++++.+++|--|+
T Consensus 10 sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 10 SLILGLIALAAFLWAVKS 27 (45)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 334444445555555544
No 187
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=27.45 E-value=73 Score=19.30 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=8.6
Q ss_pred ehhHHHHHHHHHHHHHHH
Q 044913 306 AGIIVVVVALSAIGILAF 323 (395)
Q Consensus 306 ~~vv~~v~~~~~~~~~~~ 323 (395)
.++|.+.+.+.++++++-
T Consensus 7 ~GiVLGlipvTl~Glfva 24 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVT 24 (37)
T ss_pred hhHHHHhHHHHHHHHHHH
Confidence 455555444444444433
No 188
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=26.90 E-value=49 Score=26.39 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccc
Q 044913 315 LSAIGILAFTQYRRRKQ 331 (395)
Q Consensus 315 ~~~~~~~~~~~~rrrk~ 331 (395)
.++.+++++++.|||++
T Consensus 93 ~llsg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 93 ALLSGFLVWRRCRRREK 109 (129)
T ss_dssp -----------------
T ss_pred HHHHHHHHHhhhhcccc
Confidence 34446777777776643
No 189
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=26.89 E-value=85 Score=22.98 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 044913 312 VVALSAIGILAFTQYRRR 329 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrr 329 (395)
++++++++.+++..|||-
T Consensus 10 ~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 10 VIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333444445555566664
No 190
>PRK06432 NADH dehydrogenase subunit A; Validated
Probab=26.46 E-value=1.1e+02 Score=25.11 Aligned_cols=19 Identities=11% Similarity=-0.195 Sum_probs=13.4
Q ss_pred CcceEeecCCCcccCCCCC
Q 044913 358 SPLISLEYGNGWDPLADGR 376 (395)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ 376 (395)
.......|+.|-||.++.|
T Consensus 60 ~~~k~spYECGFdp~g~~r 78 (144)
T PRK06432 60 DQSYLEPYESGEVAREIWG 78 (144)
T ss_pred CcCCCcCccCCCCCCCCcc
Confidence 3345667889999987654
No 191
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.06 E-value=65 Score=24.06 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhh
Q 044913 314 ALSAIGILAFTQYRR 328 (395)
Q Consensus 314 ~~~~~~~~~~~~~rr 328 (395)
+.+++++++|.+|+-
T Consensus 11 ~~v~~~i~~y~~~k~ 25 (87)
T PF10883_consen 11 GAVVALILAYLWWKV 25 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445544443
No 192
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=24.75 E-value=24 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=0.0
Q ss_pred cceEEehhHHHHHHHHHHHHHHHHHHh
Q 044913 301 QASVVAGIIVVVVALSAIGILAFTQYR 327 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~~~~~~~~~~~r 327 (395)
...++++|+++++++.+++.++++..|
T Consensus 128 T~tLVGIIVGVLlaIG~igGIIivvvR 154 (162)
T PF05808_consen 128 TVTLVGIIVGVLLAIGFIGGIIIVVVR 154 (162)
T ss_dssp ---------------------------
T ss_pred eeeeeeehhhHHHHHHHHhheeeEEee
Confidence 334444455444444444444443333
No 193
>PTZ00370 STEVOR; Provisional
Probab=24.48 E-value=52 Score=30.35 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCccc
Q 044913 313 VALSAIGILAFTQYRRRKQKLGSSFNA 339 (395)
Q Consensus 313 ~~~~~~~~~~~~~~rrrk~~~~~~~~~ 339 (395)
|++++++++++++.+-+|||+......
T Consensus 263 vllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 334444455555666677777665443
No 194
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.24 E-value=94 Score=25.83 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 044913 311 VVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 311 ~v~~~~~~~~~~~~~~rrr 329 (395)
+++++++++++++.++|.|
T Consensus 23 i~~ll~~l~~~~~~Y~r~r 41 (149)
T PF11694_consen 23 IIILLLVLIFFFIKYLRNR 41 (149)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3333444444444445444
No 195
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.21 E-value=55 Score=30.63 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhcccccC
Q 044913 315 LSAIGILAFTQYRRRKQKLG 334 (395)
Q Consensus 315 ~~~~~~~~~~~~rrrk~~~~ 334 (395)
+++++.++++...|.|||+.
T Consensus 267 iIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33334444444455555543
No 196
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=24.19 E-value=82 Score=20.91 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 044913 312 VVALSAIGILAFTQYRRR 329 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrr 329 (395)
.+++.++++.+++|--|+
T Consensus 11 Sl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 11 SLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 344444455555555544
No 197
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.74 E-value=75 Score=27.44 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=21.4
Q ss_pred EehhHHHHHHHHHHHHHHHHHHhhcc
Q 044913 305 VAGIIVVVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~~~~~rrrk 330 (395)
.+.+|++||+++.+..++|+.||..|
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 46788889999988899998888754
No 198
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.49 E-value=53 Score=39.82 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=27.7
Q ss_pred EeecCCCCCCCccccCCCCCCCEEeccCccCCC
Q 044913 141 QLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTG 173 (395)
Q Consensus 141 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 173 (395)
||++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899997777788889999999999998763
No 199
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=23.28 E-value=1.8e+02 Score=35.31 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=4.3
Q ss_pred EEEEecCCC
Q 044913 66 ANISLQGKG 74 (395)
Q Consensus 66 ~~L~L~~n~ 74 (395)
..|++.||.
T Consensus 3685 ~elS~tGnS 3693 (4289)
T KOG1219|consen 3685 FELSSTGNS 3693 (4289)
T ss_pred ceEeecCce
Confidence 345555543
No 200
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=23.19 E-value=1.5e+02 Score=20.23 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 044913 309 IVVVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 309 v~~v~~~~~~~~~~~~~~rrr 329 (395)
+.+.++++++++.+|+|--+.
T Consensus 8 ipvsi~l~~v~l~~flWavks 28 (58)
T COG3197 8 IPVSILLGAVGLGAFLWAVKS 28 (58)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 334444555566666665544
No 201
>PF14851 FAM176: FAM176 family
Probab=23.16 E-value=58 Score=27.16 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=10.8
Q ss_pred eEEehhHHHHHHHHHHHHHHHHH
Q 044913 303 SVVAGIIVVVVALSAIGILAFTQ 325 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~~~~~ 325 (395)
.++.+|.+++++.++++++-+.|
T Consensus 25 YFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 25 YFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhee
Confidence 34455555544444444444444
No 202
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=22.95 E-value=1.1e+02 Score=22.72 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=6.8
Q ss_pred cceEEehhHHHHHHHH
Q 044913 301 QASVVAGIIVVVVALS 316 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~ 316 (395)
...++.+++.++.+++
T Consensus 50 K~i~iS~ias~la~lv 65 (85)
T TIGR01495 50 KIILYSSIASGLALLV 65 (85)
T ss_pred ceeehHHHHHHHHHHH
Confidence 3444444444443333
No 203
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=22.48 E-value=32 Score=30.58 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 044913 314 ALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 314 ~~~~~~~~~~~~~rrrk~~ 332 (395)
++++++..++++++.+|.|
T Consensus 168 lv~l~gGGa~yYfK~~K~K 186 (218)
T PF14283_consen 168 LVALIGGGAYYYFKFYKPK 186 (218)
T ss_pred HHHHhhcceEEEEEEeccc
Confidence 3333444444333333333
No 204
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=21.91 E-value=26 Score=28.82 Aligned_cols=9 Identities=22% Similarity=-0.038 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 044913 316 SAIGILAFT 324 (395)
Q Consensus 316 ~~~~~~~~~ 324 (395)
+++++.++|
T Consensus 23 l~cgiGcvw 31 (158)
T PF11770_consen 23 LLCGIGCVW 31 (158)
T ss_pred HHHhcceEE
Confidence 333443433
No 205
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=21.69 E-value=1.1e+02 Score=26.42 Aligned_cols=6 Identities=0% Similarity=-0.390 Sum_probs=2.2
Q ss_pred HHHHHh
Q 044913 322 AFTQYR 327 (395)
Q Consensus 322 ~~~~~r 327 (395)
=++|-|
T Consensus 122 K~C~~~ 127 (205)
T PF15298_consen 122 KNCCAQ 127 (205)
T ss_pred hhhhhh
Confidence 333333
No 206
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.60 E-value=63 Score=17.60 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=5.6
Q ss_pred CCCCEEEccCC
Q 044913 111 TELSDLYLNVN 121 (395)
Q Consensus 111 ~~L~~L~L~~n 121 (395)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 207
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.53 E-value=51 Score=22.48 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=12.3
Q ss_pred CcchhHHHHHHHhhh
Q 044913 1 MGFKFFPFSLLVLFT 15 (395)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (395)
||..+++|.||+.+.
T Consensus 1 MA~Kl~vialLC~aL 15 (65)
T PF10731_consen 1 MASKLIVIALLCVAL 15 (65)
T ss_pred CcchhhHHHHHHHHH
Confidence 899999998887654
No 208
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=21.00 E-value=80 Score=29.31 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 044913 307 GIIVVVVALSAIGILAF 323 (395)
Q Consensus 307 ~vv~~v~~~~~~~~~~~ 323 (395)
.||+++++++++++=.+
T Consensus 6 LIIvGaiaI~aLl~hGl 22 (284)
T TIGR02205 6 LIIVGILAIAALLFHGL 22 (284)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 44444444443333333
No 209
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=20.70 E-value=26 Score=33.59 Aligned_cols=19 Identities=32% Similarity=0.179 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 044913 312 VVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 312 v~~~~~~~~~~~~~~rrrk 330 (395)
+-++++++..++++.||+|
T Consensus 329 ~P~l~li~Ggl~v~~~r~r 347 (350)
T PF15065_consen 329 VPLLLLILGGLYVCLRRRR 347 (350)
T ss_pred HHHHHHHHhhheEEEeccc
Confidence 3333333333444444443
No 210
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=20.40 E-value=2.1e+02 Score=28.09 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=17.7
Q ss_pred CcchhHHHHHHHhhhcC--CC------hHHHHHHHHHHHhC
Q 044913 1 MGFKFFPFSLLVLFTWA--NA------DTELRALMDMKAAL 33 (395)
Q Consensus 1 m~~~~~~~~~~~~~~~~--~~------~~~~~~L~~~~~~l 33 (395)
||.-++++-+++.+.++ ++ ..|+..|...++.+
T Consensus 1 ~ap~ll~~~~~~~~~a~~~~~ln~fls~~Ev~RliGv~AEl 41 (563)
T KOG1024|consen 1 MAPNLLTIGLLLTLIASGQAHLNIFLSLHEVLRLIGVSAEL 41 (563)
T ss_pred CChhHHHHHHHHHHHhCCCCceEEEecHHHHHHHhCcccEE
Confidence 66677666444333222 21 35666666666655
No 211
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.32 E-value=1.6e+02 Score=25.28 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=9.5
Q ss_pred EEehhHHHHHHHHHHHHHHHHH
Q 044913 304 VVAGIIVVVVALSAIGILAFTQ 325 (395)
Q Consensus 304 i~~~vv~~v~~~~~~~~~~~~~ 325 (395)
++++++++++++++.++++|++
T Consensus 20 ~~iIi~~~llll~~~G~~~~~~ 41 (182)
T PRK08455 20 LIIIIGVVVLLLLIVGVIAMLL 41 (182)
T ss_pred EEehHHHHHHHHHHHHHHHHHH
Confidence 3333333344444445555544
No 212
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=20.08 E-value=3.3e+02 Score=21.47 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=16.1
Q ss_pred CcceEEehhHHHHHHHHHHHHHHHHHHhh
Q 044913 300 HQASVVAGIIVVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 300 ~~~~i~~~vv~~v~~~~~~~~~~~~~~rr 328 (395)
....+|++++++++.....+.+.-.++||
T Consensus 85 aLp~VIGGLcaL~LaamGA~~LLrR~cRr 113 (126)
T PF03229_consen 85 ALPLVIGGLCALTLAAMGAGALLRRCCRR 113 (126)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666655555555444444
Done!