Query 044913
Match_columns 395
No_of_seqs 383 out of 3751
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 13:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 8.8E-32 3E-36 253.5 13.3 215 17-233 2-223 (313)
2 4eco_A Uncharacterized protein 99.9 5.2E-28 1.8E-32 249.0 10.9 206 20-230 29-352 (636)
3 3rgz_A Protein brassinosteroid 99.9 4.1E-27 1.4E-31 247.4 14.4 206 15-225 6-265 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 4.1E-27 1.4E-31 248.0 11.4 205 19-231 267-595 (876)
5 2o6q_A Variable lymphocyte rec 99.9 1.4E-25 4.6E-30 206.6 16.9 192 64-255 38-232 (270)
6 4fcg_A Uncharacterized protein 99.9 4.1E-26 1.4E-30 216.1 12.1 211 16-233 22-255 (328)
7 3m19_A Variable lymphocyte rec 99.9 2.7E-24 9.2E-29 195.8 13.4 197 53-254 6-205 (251)
8 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-24 8.9E-29 228.4 13.8 224 63-289 290-608 (844)
9 1ozn_A Reticulon 4 receptor; N 99.9 4.3E-24 1.5E-28 198.0 12.9 215 62-279 55-272 (285)
10 3zyi_A Leucine-rich repeat-con 99.9 1E-23 3.5E-28 208.3 15.2 226 53-279 55-339 (452)
11 3zyj_A Leucine-rich repeat-con 99.9 2.1E-23 7.2E-28 205.3 17.0 226 53-279 44-328 (440)
12 2z66_A Variable lymphocyte rec 99.9 4.4E-24 1.5E-28 199.9 10.8 232 49-280 4-299 (306)
13 1p9a_G Platelet glycoprotein I 99.9 3E-23 1E-27 193.0 15.7 189 63-255 31-221 (290)
14 3rgz_A Protein brassinosteroid 99.9 9.3E-24 3.2E-28 221.9 13.4 112 134-246 631-744 (768)
15 1ogq_A PGIP-2, polygalacturona 99.9 9.5E-24 3.2E-28 198.6 8.8 166 63-230 101-267 (313)
16 2o6s_A Variable lymphocyte rec 99.9 6E-23 2.1E-27 181.3 13.4 177 48-231 3-189 (208)
17 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-23 7.7E-28 213.1 12.1 219 64-284 377-600 (606)
18 3m19_A Variable lymphocyte rec 99.9 3.8E-22 1.3E-26 181.5 18.7 162 63-224 35-196 (251)
19 2z62_A TOLL-like receptor 4, v 99.9 3.6E-23 1.2E-27 190.8 12.0 192 64-255 29-251 (276)
20 1ziw_A TOLL-like receptor 3; i 99.9 6.5E-22 2.2E-26 205.0 17.8 226 63-288 405-670 (680)
21 3e6j_A Variable lymphocyte rec 99.9 5.4E-22 1.9E-26 178.1 14.7 167 41-224 10-176 (229)
22 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-21 4.6E-26 181.1 17.2 171 63-233 32-203 (285)
23 3t6q_A CD180 antigen; protein- 99.9 8.1E-23 2.8E-27 209.0 9.3 219 63-282 376-600 (606)
24 4fcg_A Uncharacterized protein 99.9 6.6E-22 2.3E-26 187.2 14.8 168 62-233 103-279 (328)
25 3rfs_A Internalin B, repeat mo 99.9 8.3E-21 2.8E-25 174.7 20.1 160 63-224 63-222 (272)
26 2v9t_B SLIT homolog 2 protein 99.9 7.5E-22 2.6E-26 176.1 12.6 188 67-282 15-202 (220)
27 3rfs_A Internalin B, repeat mo 99.9 1E-20 3.4E-25 174.2 18.7 180 63-246 41-222 (272)
28 2v70_A SLIT-2, SLIT homolog 2 99.9 1.4E-21 4.9E-26 174.2 11.3 152 67-221 15-167 (220)
29 2z80_A TOLL-like receptor 2, v 99.9 3.3E-22 1.1E-26 191.1 7.4 206 64-272 77-343 (353)
30 3v47_A TOLL-like receptor 5B a 99.9 2E-21 6.9E-26 191.6 12.9 145 112-256 276-423 (455)
31 2o6q_A Variable lymphocyte rec 99.8 3.7E-20 1.3E-24 170.2 18.7 163 62-224 60-222 (270)
32 2id5_A Lingo-1, leucine rich r 99.8 1.2E-20 4.1E-25 187.4 15.7 177 53-229 12-198 (477)
33 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-21 8.6E-26 198.2 10.4 208 82-290 415-627 (635)
34 2id5_A Lingo-1, leucine rich r 99.8 1.2E-20 4E-25 187.5 14.1 216 62-280 127-368 (477)
35 2xot_A Amphoterin-induced prot 99.8 4.3E-20 1.5E-24 177.0 15.1 181 67-250 22-210 (361)
36 3oja_B Anopheles plasmodium-re 99.8 9.6E-20 3.3E-24 186.1 15.9 158 39-196 8-184 (597)
37 2v9t_B SLIT homolog 2 protein 99.8 1.3E-19 4.3E-24 161.6 14.6 149 49-197 8-166 (220)
38 2z63_A TOLL-like receptor 4, v 99.8 9.3E-21 3.2E-25 192.0 8.0 194 62-256 346-546 (570)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.6E-20 8.8E-25 188.9 11.0 184 84-271 350-546 (562)
40 2xot_A Amphoterin-induced prot 99.8 4.1E-20 1.4E-24 177.1 11.9 173 50-222 16-204 (361)
41 1ziw_A TOLL-like receptor 3; i 99.8 2.2E-19 7.5E-24 186.0 18.2 169 63-231 25-195 (680)
42 2z7x_B TOLL-like receptor 1, v 99.8 8.2E-21 2.8E-25 190.5 7.0 183 84-272 321-510 (520)
43 2xwt_C Thyrotropin receptor; s 99.8 1.1E-19 3.7E-24 163.9 12.7 165 63-230 31-203 (239)
44 3o6n_A APL1; leucine-rich repe 99.8 2E-19 7E-24 173.9 15.0 135 63-197 45-179 (390)
45 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-19 9.9E-24 169.1 15.7 175 50-227 31-237 (332)
46 3t6q_A CD180 antigen; protein- 99.8 2.3E-19 8E-24 183.3 15.4 166 63-228 33-200 (606)
47 1p9a_G Platelet glycoprotein I 99.8 7.1E-19 2.4E-23 163.4 17.1 158 61-222 53-210 (290)
48 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 170.0 11.6 162 62-223 100-264 (306)
49 3v47_A TOLL-like receptor 5B a 99.8 1.1E-19 3.6E-24 179.2 12.2 163 63-225 212-413 (455)
50 2o6s_A Variable lymphocyte rec 99.8 1.8E-18 6.3E-23 152.4 18.6 156 66-224 10-165 (208)
51 1wwl_A Monocyte differentiatio 99.8 4E-20 1.4E-24 173.6 8.3 174 63-238 95-284 (312)
52 2z81_A CD282 antigen, TOLL-lik 99.8 3.7E-20 1.3E-24 186.9 8.7 158 63-220 26-185 (549)
53 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-19 8.6E-24 159.6 13.0 151 49-199 8-169 (220)
54 1xku_A Decorin; proteoglycan, 99.8 9.4E-19 3.2E-23 165.4 17.5 172 50-227 29-212 (330)
55 3vq2_A TLR4, TOLL-like recepto 99.8 2.5E-19 8.6E-24 183.0 14.4 166 63-228 32-202 (606)
56 2xwt_C Thyrotropin receptor; s 99.8 2.4E-19 8.1E-24 161.7 12.1 171 62-235 54-233 (239)
57 2z62_A TOLL-like receptor 4, v 99.8 3.4E-19 1.2E-23 164.1 12.9 163 62-224 51-241 (276)
58 4g8a_A TOLL-like receptor 4; l 99.8 3.5E-19 1.2E-23 182.2 13.4 165 63-227 52-221 (635)
59 3j0a_A TOLL-like receptor 5; m 99.8 4.5E-19 1.5E-23 188.1 13.7 174 53-227 15-194 (844)
60 1xku_A Decorin; proteoglycan, 99.8 1.6E-18 5.6E-23 163.7 15.8 160 63-229 100-261 (330)
61 3oja_B Anopheles plasmodium-re 99.8 1.7E-18 5.9E-23 176.8 16.9 111 63-173 75-185 (597)
62 3o6n_A APL1; leucine-rich repe 99.8 2.4E-18 8.3E-23 166.3 17.0 167 63-231 69-272 (390)
63 4ezg_A Putative uncharacterize 99.8 1.5E-18 5.3E-23 151.7 12.9 151 63-221 44-195 (197)
64 3oja_A Leucine-rich immune mol 99.8 1.3E-19 4.4E-24 180.5 6.3 130 112-245 121-253 (487)
65 2ft3_A Biglycan; proteoglycan, 99.8 3E-18 1E-22 162.0 15.4 159 62-228 101-261 (332)
66 1w8a_A SLIT protein; signaling 99.8 7.7E-19 2.6E-23 153.0 10.2 112 112-223 30-142 (192)
67 2wfh_A SLIT homolog 2 protein 99.8 7.9E-19 2.7E-23 153.2 10.0 144 112-281 32-175 (193)
68 2z63_A TOLL-like receptor 4, v 99.8 2.3E-18 7.7E-23 174.4 14.6 167 63-229 28-199 (570)
69 4glp_A Monocyte differentiatio 99.8 8.2E-19 2.8E-23 164.5 10.4 173 64-238 92-282 (310)
70 1wwl_A Monocyte differentiatio 99.8 3.6E-19 1.2E-23 167.1 7.5 166 62-233 120-298 (312)
71 3zyi_A Leucine-rich repeat-con 99.8 3.2E-18 1.1E-22 168.9 14.4 162 62-223 98-306 (452)
72 3zyj_A Leucine-rich repeat-con 99.8 3.4E-18 1.2E-22 168.1 14.3 159 62-222 111-294 (440)
73 4glp_A Monocyte differentiatio 99.8 1.2E-18 4.1E-23 163.3 9.3 174 62-239 116-305 (310)
74 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.5E-22 149.4 15.3 137 62-199 39-175 (229)
75 4ecn_A Leucine-rich repeat pro 99.8 5.3E-19 1.8E-23 186.4 6.8 163 62-229 447-640 (876)
76 4eco_A Uncharacterized protein 99.7 1.3E-17 4.3E-22 171.6 16.1 158 64-225 403-583 (636)
77 2z7x_B TOLL-like receptor 1, v 99.7 9.6E-18 3.3E-22 168.2 14.6 160 61-224 322-485 (520)
78 3o53_A Protein LRIM1, AGAP0063 99.7 8.8E-19 3E-23 164.8 6.1 178 62-245 57-253 (317)
79 2z80_A TOLL-like receptor 2, v 99.7 1.4E-17 4.7E-22 158.9 13.8 175 63-238 52-232 (353)
80 1h6u_A Internalin H; cell adhe 99.7 3.6E-17 1.2E-21 153.2 16.3 151 62-224 62-212 (308)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.5E-17 5E-22 168.6 14.4 160 61-224 351-514 (562)
82 2z81_A CD282 antigen, TOLL-lik 99.7 1.6E-17 5.5E-22 167.5 14.0 166 53-231 5-172 (549)
83 4b8c_D Glucose-repressible alc 99.7 4.7E-19 1.6E-23 184.6 2.4 204 19-228 130-362 (727)
84 1h6t_A Internalin B; cell adhe 99.7 8.3E-17 2.8E-21 149.5 16.2 146 64-221 47-192 (291)
85 1h6u_A Internalin H; cell adhe 99.7 9.9E-17 3.4E-21 150.2 16.3 150 63-224 41-190 (308)
86 3oja_A Leucine-rich immune mol 99.7 3.3E-18 1.1E-22 170.4 6.5 162 64-232 100-263 (487)
87 2ell_A Acidic leucine-rich nuc 99.7 3.2E-17 1.1E-21 139.3 11.6 134 85-220 22-160 (168)
88 3cvr_A Invasion plasmid antige 99.7 1.8E-17 6.2E-22 167.2 10.9 157 40-220 33-193 (571)
89 4fmz_A Internalin; leucine ric 99.7 1.1E-16 3.7E-21 152.0 15.6 154 63-228 155-308 (347)
90 1w8a_A SLIT protein; signaling 99.7 9.8E-17 3.4E-21 139.7 13.8 132 66-200 11-143 (192)
91 4ay9_X Follicle-stimulating ho 99.7 6.6E-17 2.3E-21 154.1 13.7 187 49-236 6-231 (350)
92 1h6t_A Internalin B; cell adhe 99.7 6.3E-17 2.2E-21 150.3 12.9 148 62-221 67-214 (291)
93 3cvr_A Invasion plasmid antige 99.7 3.3E-17 1.1E-21 165.3 11.4 148 63-231 100-254 (571)
94 3o53_A Protein LRIM1, AGAP0063 99.7 9.4E-18 3.2E-22 157.8 6.2 162 64-232 100-263 (317)
95 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.8E-21 146.4 13.1 147 63-222 41-187 (263)
96 2o6r_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 133.8 15.3 114 87-224 28-141 (177)
97 4ezg_A Putative uncharacterize 99.7 8.7E-17 3E-21 140.5 11.1 150 83-238 40-191 (197)
98 1m9s_A Internalin B; cell inva 99.7 4.1E-16 1.4E-20 158.8 16.8 149 62-222 64-212 (605)
99 2je0_A Acidic leucine-rich nuc 99.7 5.9E-17 2E-21 134.9 8.2 129 86-216 16-149 (149)
100 2o6r_A Variable lymphocyte rec 99.7 5.6E-16 1.9E-20 132.9 14.5 139 114-255 10-151 (177)
101 2ell_A Acidic leucine-rich nuc 99.7 6.1E-17 2.1E-21 137.6 7.9 132 63-196 24-160 (168)
102 4fmz_A Internalin; leucine ric 99.7 2.5E-16 8.7E-21 149.5 12.9 166 62-237 176-342 (347)
103 1m9s_A Internalin B; cell inva 99.7 3E-16 1E-20 159.8 14.2 156 62-231 42-197 (605)
104 1o6v_A Internalin A; bacterial 99.7 7.8E-16 2.7E-20 152.3 15.8 148 63-222 199-346 (466)
105 2wfh_A SLIT homolog 2 protein 99.7 8.7E-16 3E-20 133.8 14.0 128 66-197 13-140 (193)
106 1o6v_A Internalin A; bacterial 99.7 4.3E-16 1.5E-20 154.2 12.7 156 62-231 220-375 (466)
107 3bz5_A Internalin-J, INLJ; leu 99.6 4.7E-15 1.6E-19 146.4 19.3 162 54-233 76-259 (457)
108 3bz5_A Internalin-J, INLJ; leu 99.6 3.9E-15 1.4E-19 146.9 18.2 159 63-238 64-222 (457)
109 2je0_A Acidic leucine-rich nuc 99.6 9.9E-17 3.4E-21 133.5 4.7 128 63-192 17-149 (149)
110 2ast_B S-phase kinase-associat 99.6 1.8E-17 6.3E-22 156.6 -0.6 168 63-231 70-247 (336)
111 1xeu_A Internalin C; cellular 99.6 1.5E-15 5.1E-20 138.9 11.7 153 64-231 20-172 (263)
112 3g39_A Variable lymphocyte rec 99.6 1E-15 3.6E-20 130.5 8.6 108 113-223 11-118 (170)
113 2ca6_A RAN GTPase-activating p 99.6 1.9E-17 6.5E-22 159.9 -3.0 165 63-227 94-298 (386)
114 2ast_B S-phase kinase-associat 99.6 3.4E-17 1.2E-21 154.8 -1.6 157 62-218 92-258 (336)
115 1a9n_A U2A', U2A'; complex (nu 99.6 2.1E-15 7.1E-20 129.2 8.5 134 82-220 14-153 (176)
116 1dce_A Protein (RAB geranylger 99.6 4.3E-17 1.5E-21 164.9 -2.6 155 64-224 350-550 (567)
117 1jl5_A Outer protein YOPM; leu 99.6 3E-14 1E-18 140.4 17.0 139 64-220 132-270 (454)
118 2r9u_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 127.5 8.4 104 115-221 16-119 (174)
119 1jl5_A Outer protein YOPM; leu 99.6 4.9E-14 1.7E-18 138.9 17.3 157 63-238 111-267 (454)
120 3g06_A SSPH2 (leucine-rich rep 99.6 5E-15 1.7E-19 151.1 10.4 94 64-172 41-134 (622)
121 2ca6_A RAN GTPase-activating p 99.6 9.1E-17 3.1E-21 155.1 -2.6 160 63-222 60-259 (386)
122 4b8c_D Glucose-repressible alc 99.6 2.2E-15 7.5E-20 156.9 6.2 138 88-229 192-338 (727)
123 3goz_A Leucine-rich repeat-con 99.6 1.3E-16 4.6E-21 152.7 -2.8 108 65-172 24-151 (362)
124 3g06_A SSPH2 (leucine-rich rep 99.5 3.4E-14 1.2E-18 144.9 14.3 46 183-229 261-306 (622)
125 3goz_A Leucine-rich repeat-con 99.5 7E-16 2.4E-20 147.6 1.0 161 67-227 2-187 (362)
126 1ds9_A Outer arm dynein; leuci 99.5 1.3E-17 4.5E-22 145.9 -10.7 149 65-220 20-185 (198)
127 3g39_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 117.2 12.8 87 111-197 30-116 (170)
128 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.3E-19 123.3 7.2 128 63-196 19-153 (176)
129 1dce_A Protein (RAB geranylger 99.5 5.1E-14 1.7E-18 142.4 10.7 122 88-214 442-567 (567)
130 2r9u_A Variable lymphocyte rec 99.5 2.7E-13 9.4E-18 115.8 12.9 104 66-196 15-118 (174)
131 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.8E-21 139.3 -9.1 138 83-225 14-158 (198)
132 4ay9_X Follicle-stimulating ho 99.5 3.6E-13 1.2E-17 128.1 12.8 157 67-226 13-173 (350)
133 2ifg_A High affinity nerve gro 99.4 1.2E-13 4.2E-18 131.0 8.9 103 116-221 13-117 (347)
134 1z7x_W Ribonuclease inhibitor; 99.4 1.7E-15 5.9E-20 149.2 -6.4 166 63-228 199-395 (461)
135 1z7x_W Ribonuclease inhibitor; 99.4 2.4E-15 8.3E-20 148.2 -6.3 165 63-227 170-361 (461)
136 3sb4_A Hypothetical leucine ri 99.4 1.7E-12 5.8E-17 122.4 9.6 48 86-134 100-147 (329)
137 2ifg_A High affinity nerve gro 99.3 7E-12 2.4E-16 118.8 10.0 102 69-173 14-117 (347)
138 3un9_A NLR family member X1; l 99.3 5.8E-14 2E-18 134.7 -6.4 166 63-228 72-260 (372)
139 3sb4_A Hypothetical leucine ri 99.2 5.8E-11 2E-15 111.8 10.6 167 63-232 101-322 (329)
140 3ogk_B Coronatine-insensitive 99.0 1.1E-11 3.9E-16 125.7 -2.2 159 62-221 317-502 (592)
141 3un9_A NLR family member X1; l 99.0 5.9E-12 2E-16 120.7 -5.4 158 63-220 101-283 (372)
142 3ogk_B Coronatine-insensitive 99.0 3.3E-11 1.1E-15 122.3 -0.6 63 152-215 286-350 (592)
143 4fdw_A Leucine rich hypothetic 98.8 3.3E-08 1.1E-12 95.5 12.4 169 63-238 180-355 (401)
144 4fdw_A Leucine rich hypothetic 98.8 4.3E-08 1.5E-12 94.7 12.7 145 65-215 159-308 (401)
145 2p1m_B Transport inhibitor res 98.8 1E-09 3.6E-14 111.2 0.8 108 62-169 104-221 (594)
146 2p1m_B Transport inhibitor res 98.7 4.5E-10 1.6E-14 113.9 -2.7 158 62-221 313-495 (594)
147 2ra8_A Uncharacterized protein 98.7 2.8E-09 9.7E-14 101.4 1.4 156 63-221 139-321 (362)
148 2ra8_A Uncharacterized protein 98.6 3.1E-08 1.1E-12 94.2 5.7 158 62-222 106-294 (362)
149 1io0_A Tropomodulin; LRR prote 98.4 2.4E-08 8.1E-13 85.8 -1.3 121 80-220 29-164 (185)
150 1io0_A Tropomodulin; LRR prote 98.4 1.6E-08 5.5E-13 86.9 -2.6 87 62-148 35-136 (185)
151 3rw6_A Nuclear RNA export fact 98.3 2.1E-08 7E-13 91.0 -3.9 80 133-213 168-257 (267)
152 3rw6_A Nuclear RNA export fact 98.2 7.1E-07 2.4E-11 80.9 4.1 68 156-224 167-237 (267)
153 3rfe_A Platelet glycoprotein I 98.1 2.2E-06 7.6E-11 68.9 4.4 95 163-282 12-107 (130)
154 3e4g_A ATP synthase subunit S, 97.9 9.2E-06 3.1E-10 68.5 4.0 83 136-218 62-150 (176)
155 3e4g_A ATP synthase subunit S, 97.7 6.4E-06 2.2E-10 69.5 1.0 83 63-145 61-149 (176)
156 4gt6_A Cell surface protein; l 97.7 0.00014 4.9E-09 69.6 9.5 109 105-217 259-367 (394)
157 4fs7_A Uncharacterized protein 97.5 0.00055 1.9E-08 65.4 11.9 130 80-216 246-375 (394)
158 4h09_A Hypothetical leucine ri 97.5 0.0005 1.7E-08 65.2 10.8 129 82-214 212-340 (379)
159 4h09_A Hypothetical leucine ri 97.4 0.00063 2.1E-08 64.6 10.3 139 64-207 218-356 (379)
160 4fs7_A Uncharacterized protein 97.4 0.00053 1.8E-08 65.6 9.4 140 64-212 254-393 (394)
161 2ks1_B Epidermal growth factor 97.2 0.00033 1.1E-08 43.8 4.0 34 299-332 8-41 (44)
162 4gt6_A Cell surface protein; l 97.2 0.0014 4.9E-08 62.5 9.8 113 112-229 243-355 (394)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00014 4.8E-09 62.4 0.7 118 82-219 36-169 (197)
164 2l2t_A Receptor tyrosine-prote 97.0 0.00066 2.2E-08 42.4 3.4 33 301-333 9-41 (44)
165 1pgv_A TMD-1, tropomodulin TMD 96.8 9.1E-05 3.1E-09 63.6 -1.7 84 62-145 40-136 (197)
166 2jwa_A Receptor tyrosine-prote 96.7 0.0012 4E-08 41.1 3.2 28 305-332 14-41 (44)
167 3rfe_A Platelet glycoprotein I 96.5 0.0045 1.5E-07 49.3 6.2 33 113-145 33-65 (130)
168 2k1k_A Ephrin type-A receptor 93.7 0.03 1E-06 33.8 1.8 25 304-328 13-37 (38)
169 2k9y_A Ephrin type-A receptor 89.4 0.1 3.5E-06 32.1 0.8 15 302-316 13-27 (41)
170 1iij_A ERBB-2 receptor protein 81.7 0.22 7.5E-06 29.2 -0.5 24 305-329 11-34 (35)
171 2knc_A Integrin alpha-IIB; tra 76.5 2.9 0.0001 27.1 3.6 22 302-323 13-34 (54)
172 2ks1_B Epidermal growth factor 71.5 3 0.0001 25.8 2.6 33 299-332 12-44 (44)
173 2l8s_A Integrin alpha-1; trans 69.8 5.2 0.00018 25.8 3.5 22 302-323 10-31 (54)
174 2knc_B Integrin beta-3; transm 64.5 0.65 2.2E-05 33.0 -1.7 23 301-323 10-32 (79)
175 2l9u_A Receptor tyrosine-prote 63.7 7.4 0.00025 22.4 2.9 23 308-330 12-34 (40)
176 2l2t_A Receptor tyrosine-prote 63.4 4.1 0.00014 25.2 2.0 15 317-331 28-42 (44)
177 2lz0_A Uncharacterized protein 62.5 26 0.00087 25.7 6.8 45 75-120 8-52 (100)
178 2lz0_A Uncharacterized protein 59.0 31 0.0011 25.2 6.7 48 97-145 6-53 (100)
179 2l6w_A Beta-type platelet-deri 62.1 2.2 7.5E-05 25.4 0.0 8 304-311 10-17 (39)
180 2jwa_A Receptor tyrosine-prote 54.9 3.3 0.00011 25.6 0.5 24 309-332 21-44 (44)
181 2klu_A T-cell surface glycopro 54.4 17 0.00058 24.4 3.9 28 304-331 13-40 (70)
182 2k1a_A Integrin alpha-IIB; sin 49.4 9.2 0.00031 23.4 1.9 13 304-316 13-25 (42)
183 1zza_A Stannin, AG8_1; helix, 47.8 14 0.00046 25.3 2.7 9 325-333 35-43 (90)
184 1pfi_A Major coat protein of P 46.5 15 0.00052 22.0 2.4 24 305-328 22-45 (46)
185 2l34_A TYRO protein tyrosine k 43.4 15 0.0005 21.1 2.0 12 312-323 17-28 (33)
186 2k9j_B Integrin beta-3; transm 38.1 10 0.00036 23.2 0.9 20 303-322 11-30 (43)
187 2knc_B Integrin beta-3; transm 32.8 23 0.00079 24.9 2.1 26 302-327 8-33 (79)
188 2knc_A Integrin alpha-IIB; tra 31.1 71 0.0024 20.5 4.0 28 301-328 9-36 (54)
189 1vf5_G Protein PET G; photosyn 30.7 42 0.0015 19.5 2.5 21 305-325 6-26 (37)
190 2l8s_A Integrin alpha-1; trans 29.8 67 0.0023 20.6 3.7 27 302-328 7-33 (54)
191 2lx0_A Membrane fusion protein 29.8 57 0.002 17.5 2.8 17 308-324 8-24 (32)
192 4b19_A PEPA1; toxin, toxin apo 24.1 24 0.0008 19.7 0.7 15 313-327 12-26 (30)
193 2ifo_A Inovirus; helical virus 23.8 76 0.0026 19.7 3.0 18 311-328 27-44 (46)
194 1q90_G Cytochrome B6F complex 23.3 1.1E+02 0.0036 17.9 3.3 20 306-325 7-26 (37)
195 1cd1_A CD1, MCD1D.1; immunolog 22.8 18 0.00061 32.8 0.0 20 310-329 289-308 (315)
196 1q55_A EP-cadherin, C-cadherin 22.6 18 0.00062 37.9 0.0 14 308-321 710-723 (880)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.8e-32 Score=253.54 Aligned_cols=215 Identities=31% Similarity=0.544 Sum_probs=196.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCeeecCCC---CCEEEEEecCCCCCC--cCCccccCCCCCcE
Q 044913 17 ANADTELRALMDMKAALDPEERYLSSWTINGDPCDGSFEGIACNEK---GQVANISLQGKGLNG--KVSPAIAGLKHLTG 91 (395)
Q Consensus 17 ~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~~~~~gv~c~~~---~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~ 91 (395)
.|.++|.+||+++|+++.... .+.+|..+.|||.+.|.||.|+.. ++|+.|+|++|.+.+ .+|..|.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 577899999999999995433 688998788999556999999854 799999999999999 89999999999999
Q ss_pred EEccC-CCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCcc
Q 044913 92 LYLHY-NSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQ 170 (395)
Q Consensus 92 L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 170 (395)
|++++ |.+.+.+|..|.++++|++|+|++|.+++.+|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCC-CCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc
Q 044913 171 LTGAIPANLGDLG-MLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG 233 (395)
Q Consensus 171 l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l 233 (395)
+++.+|..+..++ +|+.|++++|.+++.+|..+..++ |+.|++++|.+++..|..+..+..+
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 9999999999998 999999999999988999998887 9999999999998888776654433
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.2e-28 Score=249.01 Aligned_cols=206 Identities=22% Similarity=0.366 Sum_probs=184.6
Q ss_pred hHHHHHHHHHHHhCCCCCCC--------CCCCCCCCCCCCCCC---CeeecCCCCCEEEEEecCCCCCCcCCccccCCCC
Q 044913 20 DTELRALMDMKAALDPEERY--------LSSWTINGDPCDGSF---EGIACNEKGQVANISLQGKGLNGKVSPAIAGLKH 88 (395)
Q Consensus 20 ~~~~~~L~~~~~~l~~~~~~--------l~~W~~~~~~c~~~~---~gv~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~ 88 (395)
..|++||.+++++++...+. ..+|..+.|+| .| .||.|+..++|+.|+|+++++.|.+|+++++|++
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c--~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD--MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG--GTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcc--cccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCcc
Confidence 47899999999998544321 23798888888 89 9999988899999999999999999999999999
Q ss_pred CcEEEccCCCC---------------------------------------------------------------------
Q 044913 89 LTGLYLHYNSL--------------------------------------------------------------------- 99 (395)
Q Consensus 89 L~~L~Ls~n~l--------------------------------------------------------------------- 99 (395)
|+.|+|++|.+
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 99999998843
Q ss_pred ---------CCCCccccCCCCCCCEEEccCCCCCCC-----------------CCCCCC--CCCCccEEEeecCCCCCCC
Q 044913 100 ---------YGQIPREIANLTELSDLYLNVNNLSGD-----------------IPPEIG--YMGSLQVLQLCYNQLTGSI 151 (395)
Q Consensus 100 ---------~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~n~l~~~~ 151 (395)
++ +|..+.++++|++|+|++|.+++. +|..++ .+++|++|++++|.+.+.+
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence 34 788899999999999999999975 999999 9999999999999999999
Q ss_pred ccccCCCCCCCEEeccCcc-CCC-CCccccCCC------CCCCEEEccCCCCCCcchh--hhcCCCCCcEEEccCCCCCC
Q 044913 152 PTQLGSLRKLSVLALQSNQ-LTG-AIPANLGDL------GMLMRLDLSFNHLFGSIPR--KLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 152 p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~l~~N~l~~ 221 (395)
|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+..+++|+.|++++|.++|
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc
Confidence 9999999999999999998 998 788888776 99999999999999 7888 89999999999999999998
Q ss_pred CCChhhhcc
Q 044913 222 SVPPALKRL 230 (395)
Q Consensus 222 ~~p~~l~~l 230 (395)
.+| .+..+
T Consensus 345 ~ip-~~~~l 352 (636)
T 4eco_A 345 KLP-AFGSE 352 (636)
T ss_dssp ECC-CCEEE
T ss_pred chh-hhCCC
Confidence 898 65433
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=4.1e-27 Score=247.43 Aligned_cols=206 Identities=31% Similarity=0.464 Sum_probs=154.7
Q ss_pred hcCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCEEEEEecCCCCCCc---CC-----------
Q 044913 15 TWANADTELRALMDMKAALDPEERYLSSWTINGDPCDGSFEGIACNEKGQVANISLQGKGLNGK---VS----------- 80 (395)
Q Consensus 15 ~~~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~~~~~gv~c~~~~~l~~L~L~~n~l~~~---~~----------- 80 (395)
+.++.++|++||+++|+++.+.. .+.+|..+.||| .|.||.|+ .++|+.|+|+++.+.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C--~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPC--TFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGG--GSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCc--CCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 34445789999999999996444 789998778899 89999998 79999999999998876 33
Q ss_pred ------------ccccCCCCCcEEEccCCCCCCCCcc--ccCCCCCCCEEEccCCCCCCCCCCCC-CCCCCccEEEeecC
Q 044913 81 ------------PAIAGLKHLTGLYLHYNSLYGQIPR--EIANLTELSDLYLNVNNLSGDIPPEI-GYMGSLQVLQLCYN 145 (395)
Q Consensus 81 ------------~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n 145 (395)
..|..+++|++|+|++|.+.+.+|. .+.++++|++|+|++|.+.+..|..+ ..+++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4677889999999999999988888 89999999999999999988877765 77888888888888
Q ss_pred CCCCCCccc---cCC----------------------CCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcch
Q 044913 146 QLTGSIPTQ---LGS----------------------LRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIP 200 (395)
Q Consensus 146 ~l~~~~p~~---l~~----------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 200 (395)
.+++..|.. +.+ +++|++|++++|.+++.+|. ++.+++|++|++++|.+++.+|
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 887666554 444 44555555555555554444 5666666666666666666666
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCCh
Q 044913 201 RKLADAPLLEVLDIRNNTLSGSVPP 225 (395)
Q Consensus 201 ~~l~~l~~L~~L~l~~N~l~~~~p~ 225 (395)
..+..+++|++|++++|.+++.+|.
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCC
T ss_pred HHHhcCCCCCEEECCCCcccCccCc
Confidence 6666666666666666666655554
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.1e-27 Score=248.05 Aligned_cols=205 Identities=22% Similarity=0.315 Sum_probs=176.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCCCCCCCC-----CCCCCCC------------CeeecCCCCCEEEEEecCCCCCCcCCc
Q 044913 19 ADTELRALMDMKAALDPEERYLSSWTING-----DPCDGSF------------EGIACNEKGQVANISLQGKGLNGKVSP 81 (395)
Q Consensus 19 ~~~~~~~L~~~~~~l~~~~~~l~~W~~~~-----~~c~~~~------------~gv~c~~~~~l~~L~L~~n~l~~~~~~ 81 (395)
...|..||+++|+++... +|..++ +||.|.| .||.|+..++|+.|+|+++++.|.+|+
T Consensus 267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 357999999999999533 675443 7733489 999999889999999999999999999
Q ss_pred cccCCCCCcEEEc-cCCCCCCC----------------------------------------------------------
Q 044913 82 AIAGLKHLTGLYL-HYNSLYGQ---------------------------------------------------------- 102 (395)
Q Consensus 82 ~~~~l~~L~~L~L-s~n~l~~~---------------------------------------------------------- 102 (395)
+|++|++|+.|+| ++|.+.|.
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 9999999999999 77744322
Q ss_pred ------------------CccccCCCCCCCEEEccCCCCCC-----------------CCCCCCC--CCCCccEEEeecC
Q 044913 103 ------------------IPREIANLTELSDLYLNVNNLSG-----------------DIPPEIG--YMGSLQVLQLCYN 145 (395)
Q Consensus 103 ------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~Ls~n 145 (395)
+|..|.++++|++|+|++|.+++ .+|..++ .+++|++|+|++|
T Consensus 422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 78889999999999999999997 3899988 9999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCcc-CCC-CCccccCCC-------CCCCEEEccCCCCCCcchh--hhcCCCCCcEEEc
Q 044913 146 QLTGSIPTQLGSLRKLSVLALQSNQ-LTG-AIPANLGDL-------GMLMRLDLSFNHLFGSIPR--KLADAPLLEVLDI 214 (395)
Q Consensus 146 ~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l-------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~l 214 (395)
.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|+.|++++|.++ .+|. .+..+++|+.|++
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 9999999999999999999999998 887 777765554 49999999999999 7887 8899999999999
Q ss_pred cCCCCCCCCChhhhccC
Q 044913 215 RNNTLSGSVPPALKRLN 231 (395)
Q Consensus 215 ~~N~l~~~~p~~l~~l~ 231 (395)
++|.++ .+| .+..+.
T Consensus 581 s~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 581 VHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp TTSCCC-BCC-CCCTTS
T ss_pred CCCCcc-cch-hhcCCC
Confidence 999998 777 555443
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.4e-25 Score=206.63 Aligned_cols=192 Identities=24% Similarity=0.219 Sum_probs=168.3
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
+++.|+|++|.+....+..|.++++|++|+|++|.++...+..|..+++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 58899999999998888899999999999999999997777778999999999999999997777788999999999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSV 223 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 223 (395)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 99999888888999999999999999999777777999999999999999999877778999999999999999999766
Q ss_pred ChhhhccCcc--ccccCCccCcCCC-CCCCccCCC
Q 044913 224 PPALKRLNEG--FLYENNLELCGVG-FSALKTCSA 255 (395)
Q Consensus 224 p~~l~~l~~l--~~~~~n~~~c~~~-~~~~~~~~~ 255 (395)
+..+..+..+ ....+|++.|+|. ..++..|..
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHH
T ss_pred HHHhccccCCCEEEecCCCeeCCCccHHHHHHHHH
Confidence 6666655544 3456788999997 455555543
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.1e-26 Score=216.14 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=178.5
Q ss_pred cCCChHHHHHHHHHHHhC-CCCCCCCCCC----CCCCCCCCCCCCeeecC---------CCCCEEEEEecCCCCCCcCCc
Q 044913 16 WANADTELRALMDMKAAL-DPEERYLSSW----TINGDPCDGSFEGIACN---------EKGQVANISLQGKGLNGKVSP 81 (395)
Q Consensus 16 ~~~~~~~~~~L~~~~~~l-~~~~~~l~~W----~~~~~~c~~~~~gv~c~---------~~~~l~~L~L~~n~l~~~~~~ 81 (395)
.++..+|..+|+++|..+ .+...++.+| ....++| .|.|+.|+ ..++|+.|+|++|.+. .+|.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 344567889999999987 3333456778 3356777 89999994 2478999999999998 6777
Q ss_pred cccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCC----
Q 044913 82 AIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGS---- 157 (395)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~---- 157 (395)
.+.++++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 8888999999999999999 88999999999999999999999 78889999999999999999888888887654
Q ss_pred -----CCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCc
Q 044913 158 -----LRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNE 232 (395)
Q Consensus 158 -----l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~ 232 (395)
+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+.+|..+..+..
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 899999999999998 788889999999999999999985 5667888999999999999999888887765544
Q ss_pred c
Q 044913 233 G 233 (395)
Q Consensus 233 l 233 (395)
+
T Consensus 255 L 255 (328)
T 4fcg_A 255 L 255 (328)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.7e-24 Score=195.77 Aligned_cols=197 Identities=25% Similarity=0.238 Sum_probs=118.2
Q ss_pred CCCeeecCCCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCC
Q 044913 53 SFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIG 132 (395)
Q Consensus 53 ~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 132 (395)
.|.|..|.. ..+.++++++.+.. +|..+. ++|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.
T Consensus 6 ~~~gC~C~~--~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 6 TVTGCTCNE--GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp HHHSSEEEG--GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCceEcCC--CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 566666632 23356666666653 333232 4566666666666666666666666666666666666655555666
Q ss_pred CCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEE
Q 044913 133 YMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVL 212 (395)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 212 (395)
.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..+..+++|+.|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 66666666666666665555566666666666666666665555556666666666666666665555556666666666
Q ss_pred EccCCCCCCCCChhhhccCcc--ccccCCccCcC-CCCCCCccCC
Q 044913 213 DIRNNTLSGSVPPALKRLNEG--FLYENNLELCG-VGFSALKTCS 254 (395)
Q Consensus 213 ~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~-~~~~~~~~~~ 254 (395)
++++|++++..+..+..+..+ ....+|+..|+ |...++..|.
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 666666665555455443332 22344555565 5555555444
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=228.36 Aligned_cols=224 Identities=23% Similarity=0.233 Sum_probs=137.7
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|.++++|+.|+|++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 45666777777776666666777777777777777776666666667777777777777666555555666666666666
Q ss_pred ecCCCCCCC-----------------------------------------------------------------------
Q 044913 143 CYNQLTGSI----------------------------------------------------------------------- 151 (395)
Q Consensus 143 s~n~l~~~~----------------------------------------------------------------------- 151 (395)
++|.+++..
T Consensus 370 s~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred CCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 665544210
Q ss_pred -----------------------ccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCC
Q 044913 152 -----------------------PTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPL 208 (395)
Q Consensus 152 -----------------------p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 208 (395)
+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..+. ++
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~ 527 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN 527 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence 11123334444444444444444444555566666666666666654444333 56
Q ss_pred CcEEEccCCCCCCCCChhhhccCccccccCCccCcCCCCCCCccCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 044913 209 LEVLDIRNNTLSGSVPPALKRLNEGFLYENNLELCGVGFSALKTCSASSNIN-PSRPEPYGAATTHSTRNIPETANVNLP 287 (395)
Q Consensus 209 L~~L~l~~N~l~~~~p~~l~~l~~l~~~~~n~~~c~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (395)
|+.|++++|++++..|..+.++..+ ...+|++.|+|.+.++..|....... ...+....|..|....+.+........
T Consensus 528 L~~L~Ls~N~l~~~~~~~~~~L~~l-~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~ 606 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPDVFVSLSVL-DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEG 606 (844)
T ss_dssp CCEEEEEEECCCCCCSCCCSSCCEE-EEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCC
T ss_pred ccEEECCCCcCCCCChhHhCCcCEE-EecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCcccc
Confidence 6666666666666666666655544 34678899999999998887544433 345677889888877776655444444
Q ss_pred CC
Q 044913 288 CN 289 (395)
Q Consensus 288 ~~ 289 (395)
|.
T Consensus 607 C~ 608 (844)
T 3j0a_A 607 CD 608 (844)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=4.3e-24 Score=198.00 Aligned_cols=215 Identities=22% Similarity=0.148 Sum_probs=170.4
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCC-CCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNS-LYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVL 140 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 140 (395)
..+++.|+|++|.+.+..+..|.++++|++|++++|. +....+..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 3578888888888888878888888888888888887 776667888888889999999988887777888888999999
Q ss_pred EeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 141 QLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 141 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 99999888777777888899999999999988666667888999999999999998877888999999999999999999
Q ss_pred CCCChhhhccCcc--ccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044913 221 GSVPPALKRLNEG--FLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIP 279 (395)
Q Consensus 221 ~~~p~~l~~l~~l--~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (395)
+..+..+..+..+ ....+|+..|+|...++..|...... ......|..|....+..
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~---~~~~~~c~~p~~l~g~~ 272 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG---SSSEVPCSLPQRLAGRD 272 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCS---EECCCBEEESGGGTTCB
T ss_pred cCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhccc---ccCccccCCchHhCCcC
Confidence 7666667666554 34567888999988776666543322 22345566665544433
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1e-23 Score=208.33 Aligned_cols=226 Identities=17% Similarity=0.112 Sum_probs=156.1
Q ss_pred CCCeeecCCC----------CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCC
Q 044913 53 SFEGIACNEK----------GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNN 122 (395)
Q Consensus 53 ~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 122 (395)
.+..+.|... .+++.|+|++|.+.+..+..|.++++|+.|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4567777532 368899999999998888899999999999999999988888888889999999999998
Q ss_pred CCCCCCCCCCCCCCccEEEeecCCCCCCCccc-------------------------cCCCCCCC---------------
Q 044913 123 LSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQ-------------------------LGSLRKLS--------------- 162 (395)
Q Consensus 123 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-------------------------l~~l~~L~--------------- 162 (395)
++...+..|..+++|++|+|++|.+....+.. |..+++|+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL 214 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccc
Confidence 88666666888888888888888776433322 33334444
Q ss_pred -------EEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc--
Q 044913 163 -------VLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG-- 233 (395)
Q Consensus 163 -------~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l-- 233 (395)
.|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+..+
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 44444444444445566666777777777777776666677777888888888888876665555555443
Q ss_pred ccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044913 234 FLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIP 279 (395)
Q Consensus 234 ~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (395)
....+|++.|+|.+.|+..|...... ........|..|....+..
T Consensus 295 L~L~~Np~~CdC~~~~l~~~l~~~~~-~~~~~~~~C~~P~~l~g~~ 339 (452)
T 3zyi_A 295 LHLHHNPWNCDCDILWLAWWLREYIP-TNSTCCGRCHAPMHMRGRY 339 (452)
T ss_dssp EECCSSCEECSTTTHHHHHHHHHHC----CCSSCBEEESTTTTTCB
T ss_pred EEccCCCcCCCCCchHHHHHHHHhCc-cCCccCcEeCCchHhccch
Confidence 34568899999999888776543211 1112234555555544433
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=205.34 Aligned_cols=226 Identities=17% Similarity=0.120 Sum_probs=149.2
Q ss_pred CCCeeecCC----------CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCC
Q 044913 53 SFEGIACNE----------KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNN 122 (395)
Q Consensus 53 ~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 122 (395)
.+..|.|.. ..+++.|+|++|.+.+..+..|.++++|+.|+|++|.+....+..|.++++|++|+|++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 456777742 1357788888888887777778888888888888887777677777777777777777777
Q ss_pred CCCCCCCCCCCCCCccEEEeecCCCCCCCcc-------------------------ccCCCCC-----------------
Q 044913 123 LSGDIPPEIGYMGSLQVLQLCYNQLTGSIPT-------------------------QLGSLRK----------------- 160 (395)
Q Consensus 123 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-------------------------~l~~l~~----------------- 160 (395)
++...+..|..+++|++|++++|.+....+. .|.++++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 203 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 203 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc
Confidence 7755555677777777777777666533222 2333333
Q ss_pred -----CCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc--
Q 044913 161 -----LSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG-- 233 (395)
Q Consensus 161 -----L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l-- 233 (395)
|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+..+
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 4444444444444445566666667777777777766666677777888888888888886666666555544
Q ss_pred ccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044913 234 FLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIP 279 (395)
Q Consensus 234 ~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (395)
....+|++.|+|.+.|+..|...... ........|..|....+..
T Consensus 284 L~L~~Np~~CdC~l~~l~~~~~~~~~-~~~~~~~~C~~P~~l~g~~ 328 (440)
T 3zyj_A 284 IHLHHNPWNCNCDILWLSWWIKDMAP-SNTACCARCNTPPNLKGRY 328 (440)
T ss_dssp EECCSSCEECSSTTHHHHHHHHTTSC-SSCSCCCBEEESTTTTTCB
T ss_pred EEcCCCCccCCCCchHHHHHHHhccc-cCCccccCCCChhHhcCcc
Confidence 34568899999999998887654321 1222345676666655544
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=4.4e-24 Score=199.86 Aligned_cols=232 Identities=23% Similarity=0.257 Sum_probs=139.6
Q ss_pred CCCCCCCeeecCCC----------CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCC----------------
Q 044913 49 PCDGSFEGIACNEK----------GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQ---------------- 102 (395)
Q Consensus 49 ~c~~~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------- 102 (395)
.|.|.|.++.|... .+++.|+|++|.+....+..|.++++|+.|+|++|.+...
T Consensus 4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 34446777777432 2566777777777655445566666666666666655411
Q ss_pred ---------CccccCCCCCCCEEEccCCCC-------------------------CCCCCCCCCCCCCccEEEeecCCCC
Q 044913 103 ---------IPREIANLTELSDLYLNVNNL-------------------------SGDIPPEIGYMGSLQVLQLCYNQLT 148 (395)
Q Consensus 103 ---------~p~~~~~l~~L~~L~L~~n~l-------------------------~~~~p~~~~~l~~L~~L~Ls~n~l~ 148 (395)
+|..+..+++|++|++++|.+ .+..+..+..+++|++|++++|.+.
T Consensus 84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 84 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 122334444444444444444 4334444445555555555555554
Q ss_pred C-CCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhh
Q 044913 149 G-SIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPAL 227 (395)
Q Consensus 149 ~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l 227 (395)
+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 3 345556666667777777777666666667777777777777777776555567777777788888887777777666
Q ss_pred hccC-cc--ccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044913 228 KRLN-EG--FLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIPE 280 (395)
Q Consensus 228 ~~l~-~l--~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (395)
..+. .+ ....+|+..|+|...++..|...............|..|....+.+.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~ 299 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 299 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBG
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCcee
Confidence 5442 22 23457778899888777777654333333345667766666555443
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3e-23 Score=193.02 Aligned_cols=189 Identities=23% Similarity=0.202 Sum_probs=167.3
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|.++++|+.|+|++|.+++..+. ..+++|++|+|++|.++ .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 4789999999999999999999999999999999999865443 78999999999999999 78889999999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+++ .
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 999999888889999999999999999999888888899999999999999999776677889999999999999999 6
Q ss_pred CChhhhccCcc--ccccCCccCcCCCCCCCccCCC
Q 044913 223 VPPALKRLNEG--FLYENNLELCGVGFSALKTCSA 255 (395)
Q Consensus 223 ~p~~l~~l~~l--~~~~~n~~~c~~~~~~~~~~~~ 255 (395)
+|..+.....+ ....+|++.|+|.+.++..|..
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred cChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 77765544332 3356889999999888877764
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=9.3e-24 Score=221.90 Aligned_cols=112 Identities=39% Similarity=0.662 Sum_probs=67.6
Q ss_pred CCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEE
Q 044913 134 MGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLD 213 (395)
Q Consensus 134 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 213 (395)
+++|++|++++|.+++.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..++.|+.||
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCCCCCCCCChh--hhccCccccccCCccCcCCC
Q 044913 214 IRNNTLSGSVPPA--LKRLNEGFLYENNLELCGVG 246 (395)
Q Consensus 214 l~~N~l~~~~p~~--l~~l~~l~~~~~n~~~c~~~ 246 (395)
+++|+++|.+|.. +..+.. ..+.+|+.+||.+
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~-~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPP-AKFLNNPGLCGYP 744 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCG-GGGCSCTEEESTT
T ss_pred CcCCcccccCCCchhhccCCH-HHhcCCchhcCCC
Confidence 6666666666643 233332 2345677777753
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=9.5e-24 Score=198.55 Aligned_cols=166 Identities=27% Similarity=0.462 Sum_probs=126.9
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCC-CccEEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMG-SLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~ 141 (395)
.++++|+|++|.+.+.+|..|.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|+
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 5788999999999988999999999999999999999988999999999999999999999888888888887 888888
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+++|.+++..|..+..+. |++|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 888888777777766665 77777777776666666666666666666666666654443 5555666666666666665
Q ss_pred CCChhhhcc
Q 044913 222 SVPPALKRL 230 (395)
Q Consensus 222 ~~p~~l~~l 230 (395)
.+|..+..+
T Consensus 259 ~~p~~l~~l 267 (313)
T 1ogq_A 259 TLPQGLTQL 267 (313)
T ss_dssp CCCGGGGGC
T ss_pred cCChHHhcC
Confidence 566555443
No 16
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=6e-23 Score=181.33 Aligned_cols=177 Identities=25% Similarity=0.211 Sum_probs=136.2
Q ss_pred CCCCCCCCeeecCCC----------CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEE
Q 044913 48 DPCDGSFEGIACNEK----------GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLY 117 (395)
Q Consensus 48 ~~c~~~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 117 (395)
+.|.+.|.++.|... .+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 346668999999632 2577888888888877777778888888888888888866666778888888888
Q ss_pred ccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCC
Q 044913 118 LNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 118 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 197 (395)
|++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 88888886555667788888888888888886666667788888888888888886666667788888888888887763
Q ss_pred cchhhhcCCCCCcEEEccCCCCCCCCChhhhccC
Q 044913 198 SIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLN 231 (395)
Q Consensus 198 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~ 231 (395)
.+++|+.|+++.|.++|.+|+.++.+.
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 345678888888888888887766554
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.2e-23 Score=213.08 Aligned_cols=219 Identities=18% Similarity=0.125 Sum_probs=164.7
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIP-REIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
+++.|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 44555555555443 33566677777777777777776666 67788888888888888888778888888899999999
Q ss_pred ecCCCCC-CCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 143 CYNQLTG-SIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 143 s~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~- 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE- 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence 9998886 36888899999999999999999888888999999999999999999888999999999999999999998
Q ss_pred CCChhhhccCc-c--ccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 044913 222 SVPPALKRLNE-G--FLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIPETANV 284 (395)
Q Consensus 222 ~~p~~l~~l~~-l--~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (395)
.+|..+..+.. + ....+|+..|+|...++..|...............|..|....+.......
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~ 600 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFN 600 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC--------------
T ss_pred ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecc
Confidence 57766665542 3 345688999999999999998776555555677888877776665554443
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.8e-22 Score=181.51 Aligned_cols=162 Identities=28% Similarity=0.256 Sum_probs=151.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46899999999999999999999999999999999999989999999999999999999999777788999999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999987777889999999999999999987777899999999999999999988888899999999999999999976
Q ss_pred CC
Q 044913 223 VP 224 (395)
Q Consensus 223 ~p 224 (395)
..
T Consensus 195 ~~ 196 (251)
T 3m19_A 195 RC 196 (251)
T ss_dssp ST
T ss_pred cc
Confidence 43
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.6e-23 Score=190.81 Aligned_cols=192 Identities=21% Similarity=0.167 Sum_probs=129.2
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
+++.|+|++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46777777777776666677777777777777777776666667777777777777777776666667777777777777
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCC-CccccCCCCCCCEEEccCCCCCCcchhhh-------------------
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGA-IPANLGDLGMLMRLDLSFNHLFGSIPRKL------------------- 203 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l------------------- 203 (395)
+|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7777765555667777777777777777652 46667777777777777776664433222
Q ss_pred --------cCCCCCcEEEccCCCCCCCCChhhhccCcc--ccccCCccCcCCC-CCCCccCCC
Q 044913 204 --------ADAPLLEVLDIRNNTLSGSVPPALKRLNEG--FLYENNLELCGVG-FSALKTCSA 255 (395)
Q Consensus 204 --------~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~~~-~~~~~~~~~ 255 (395)
....+|+.|++++|.+++..+..+..+..+ ....+|+..|+|. +.++..|..
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~ 251 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHH
Confidence 222367788888888886655555555443 3346778889885 555555543
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6.5e-22 Score=204.99 Aligned_cols=226 Identities=19% Similarity=0.213 Sum_probs=146.7
Q ss_pred CCEEEEEecCCCCCCcCC-ccccCCCCCcEEEccCCCCC--------------------------CCCccccCCCCCCCE
Q 044913 63 GQVANISLQGKGLNGKVS-PAIAGLKHLTGLYLHYNSLY--------------------------GQIPREIANLTELSD 115 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~--------------------------~~~p~~~~~l~~L~~ 115 (395)
.+++.|+|++|.+.+.++ ..|.++++|+.|++++|.+. +.+|..+..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 467777777777765444 55666666666666666543 345667777888888
Q ss_pred EEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCc--------cccCCCCCCCEEeccCccCCCCCccccCCCCCCCE
Q 044913 116 LYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIP--------TQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMR 187 (395)
Q Consensus 116 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 187 (395)
|++++|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|.++...+..|..+++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 8888888886666678888888888888888774321 23677888888888888888555567889999999
Q ss_pred EEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhh-ccCcc--ccccCCccCcCCCC-CCCccCCCCCCCCCC-
Q 044913 188 LDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALK-RLNEG--FLYENNLELCGVGF-SALKTCSASSNINPS- 262 (395)
Q Consensus 188 L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~-~l~~l--~~~~~n~~~c~~~~-~~~~~~~~~~~~~~~- 262 (395)
|++++|++++..+..|..+++|+.|++++|++++..|..+. .+..+ ....+|++.|+|.. .|+..|.........
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~ 644 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC------
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCccccc
Confidence 99999999977777788899999999999999987776554 33332 34568899999995 999999876554432
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCCC
Q 044913 263 RPEPYGAATTHSTRNIPETANVNLPC 288 (395)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (395)
....+.|..|...++.+........|
T Consensus 645 ~~~~~~C~~p~~~~g~~l~~~~~~~~ 670 (680)
T 1ziw_A 645 LSSHYLCNTPPHYHGFPVRLFDTSSC 670 (680)
T ss_dssp --------------------------
T ss_pred ccCCcEECCchHHCCCcccccChhhc
Confidence 24567888888777766555444333
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=5.4e-22 Score=178.06 Aligned_cols=167 Identities=26% Similarity=0.251 Sum_probs=142.1
Q ss_pred CCCCCCCCCCCCCCCeeecCCCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccC
Q 044913 41 SSWTINGDPCDGSFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNV 120 (395)
Q Consensus 41 ~~W~~~~~~c~~~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 120 (395)
..|+.+...| +|.+|.|.. +.+. .+|..+ .++|+.|+|++|.+.+..|..|..+++|++|+|++
T Consensus 10 ~~~~~~~~~C--s~~~v~c~~-----------~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 10 SAACPSQCSC--SGTTVDCRS-----------KRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp -CCCCTTCEE--ETTEEECTT-----------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hccCCCCCEE--eCCEeEccC-----------CCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCC
Confidence 4455567778 799988852 2333 334333 38899999999999998899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcch
Q 044913 121 NNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIP 200 (395)
Q Consensus 121 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 200 (395)
|.++...+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|+|++|++++..+
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 9998666677899999999999999999887788899999999999999999 778889999999999999999997777
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCC
Q 044913 201 RKLADAPLLEVLDIRNNTLSGSVP 224 (395)
Q Consensus 201 ~~l~~l~~L~~L~l~~N~l~~~~p 224 (395)
..+..+++|+.|++++|++.+..+
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHhCCCCCCEEEeeCCCccCCcc
Confidence 789999999999999999986544
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.3e-21 Score=181.12 Aligned_cols=171 Identities=26% Similarity=0.254 Sum_probs=157.1
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCC-CCCCCCCCCCCCCCccEEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNN-LSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 141 (395)
.+++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|. +....|..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 479999999999999888899999999999999999998889999999999999999997 8866688999999999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 99999998889999999999999999999997777789999999999999999997666679999999999999999999
Q ss_pred CCChhhhccCcc
Q 044913 222 SVPPALKRLNEG 233 (395)
Q Consensus 222 ~~p~~l~~l~~l 233 (395)
..|..+..+..+
T Consensus 192 ~~~~~~~~l~~L 203 (285)
T 1ozn_A 192 VHPHAFRDLGRL 203 (285)
T ss_dssp ECTTTTTTCTTC
T ss_pred cCHhHccCcccc
Confidence 888887655443
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=8.1e-23 Score=208.95 Aligned_cols=219 Identities=19% Similarity=0.139 Sum_probs=167.7
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCcc-ccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPR-EIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 4677777777777777777777777788888887777766544 377788888888888888777777788888888888
Q ss_pred eecCCCCCC---CccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCC
Q 044913 142 LCYNQLTGS---IPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNT 218 (395)
Q Consensus 142 Ls~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~ 218 (395)
+++|.+.+. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..++.| .|++++|+
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 888887752 33567788888888888888887778888889999999999999998888889999999 99999999
Q ss_pred CCCCCChhhhccCcc--ccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 044913 219 LSGSVPPALKRLNEG--FLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIPETA 282 (395)
Q Consensus 219 l~~~~p~~l~~l~~l--~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (395)
+++..|..+..+..+ ....+|+..|+|...++..|...............|..|...++.....
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~ 600 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSD 600 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGG
T ss_pred ccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeee
Confidence 998777766544433 3356788899999888888876544444445667788777666655443
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=6.6e-22 Score=187.19 Aligned_cols=168 Identities=21% Similarity=0.342 Sum_probs=140.4
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCC--------
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGY-------- 133 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-------- 133 (395)
..++++|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..+..+++|++|+|++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 347889999999988 78888888999999999999888 77888888999999999988888788877654
Q ss_pred -CCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEE
Q 044913 134 -MGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVL 212 (395)
Q Consensus 134 -l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 212 (395)
+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 888888888888888 778888888888888888888884 55568888888888888888888888888888888888
Q ss_pred EccCCCCCCCCChhhhccCcc
Q 044913 213 DIRNNTLSGSVPPALKRLNEG 233 (395)
Q Consensus 213 ~l~~N~l~~~~p~~l~~l~~l 233 (395)
++++|.+.+.+|..+..+..+
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTC
T ss_pred ECCCCCchhhcchhhhcCCCC
Confidence 888888888888777655544
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=8.3e-21 Score=174.75 Aligned_cols=160 Identities=26% Similarity=0.229 Sum_probs=97.1
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+. +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 3566666666666542 35566666666666666666555555666666666666666666544555566666666666
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 66666655555556666666666666666655555556666666666666666655555556666666666666666554
Q ss_pred CC
Q 044913 223 VP 224 (395)
Q Consensus 223 ~p 224 (395)
.|
T Consensus 221 ~~ 222 (272)
T 3rfs_A 221 CP 222 (272)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 26
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=7.5e-22 Score=176.06 Aligned_cols=188 Identities=19% Similarity=0.213 Sum_probs=153.6
Q ss_pred EEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCC
Q 044913 67 NISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQ 146 (395)
Q Consensus 67 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 146 (395)
.++++++++.. +|..+. ++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45566666664 344332 689999999999998888899999999999999999998889999999999999999999
Q ss_pred CCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChh
Q 044913 147 LTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPA 226 (395)
Q Consensus 147 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 226 (395)
++...+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++..+..+..+++|+.|++++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI------ 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE------
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC------
Confidence 99777777899999999999999999888899999999999999999999887788999999999999988875
Q ss_pred hhccCccccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 044913 227 LKRLNEGFLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIPETA 282 (395)
Q Consensus 227 l~~l~~l~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (395)
|+|.+.|+..|...... ......|..|...++.....
T Consensus 166 ----------------c~c~l~~l~~~l~~~~~---~~~~~~C~~P~~l~g~~l~~ 202 (220)
T 2v9t_B 166 ----------------CDCHLKWLADYLHTNPI---ETSGARCTSPRRLANKRIGQ 202 (220)
T ss_dssp ----------------CSGGGHHHHHHHHHCCC---BCSCCBEEESGGGTTCBGGG
T ss_pred ----------------CCCccHHHHHHHHhCCC---CccCCCcCCchHHcCCchhh
Confidence 77777777666443222 22445677777666655433
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1e-20 Score=174.22 Aligned_cols=180 Identities=24% Similarity=0.215 Sum_probs=158.2
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++.+|.+... +.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 4789999999998753 4588999999999999999863 47899999999999999999777778899999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 99999988888899999999999999999988888889999999999999999988787889999999999999999988
Q ss_pred CChhhhccCcc--ccccCCccCcCCC
Q 044913 223 VPPALKRLNEG--FLYENNLELCGVG 246 (395)
Q Consensus 223 ~p~~l~~l~~l--~~~~~n~~~c~~~ 246 (395)
.|..+..+..+ ....+|+..|+|.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHHHHhCCcCCCEEEccCCCccccCc
Confidence 88766655544 2345677788875
No 28
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=174.24 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=136.4
Q ss_pred EEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecC
Q 044913 67 NISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIP-REIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145 (395)
Q Consensus 67 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 145 (395)
.+++++|.++. +|..+ ...++.|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 68888888875 45544 3457899999999997755 56899999999999999999777779999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 146 QLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 146 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
.+++..+..|..+++|++|++++|.+++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9998888889999999999999999998889999999999999999999998889999999999999999999873
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=3.3e-22 Score=191.07 Aligned_cols=206 Identities=19% Similarity=0.179 Sum_probs=103.6
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCC-CCCCCCCCccEEEe
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIP-PEIGYMGSLQVLQL 142 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L 142 (395)
+++.|+|++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.++...+ ..+..+++|++|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEEC
Confidence 34444444444444444444444444444444444443333334455555555555555542222 24555555555555
Q ss_pred ecC-CCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCC------------------------CC
Q 044913 143 CYN-QLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHL------------------------FG 197 (395)
Q Consensus 143 s~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l------------------------~~ 197 (395)
++| .+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+ ++
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 555 24433444555556666666666666555555555554444444444433 22
Q ss_pred c-------------------------------chhhhcCCCCCcEEEccCCCCCCCCChh-hhccCcc--ccccCCccCc
Q 044913 198 S-------------------------------IPRKLADAPLLEVLDIRNNTLSGSVPPA-LKRLNEG--FLYENNLELC 243 (395)
Q Consensus 198 ~-------------------------------~p~~l~~l~~L~~L~l~~N~l~~~~p~~-l~~l~~l--~~~~~n~~~c 243 (395)
. +|..+..+++|+.|++++|+++ .+|.. +..+..+ ....+|+..|
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 1 2334456667777777777777 45544 3444433 2345667778
Q ss_pred CCC-CCCCccCCCCCCCCCCCCCCCCCCCC
Q 044913 244 GVG-FSALKTCSASSNINPSRPEPYGAATT 272 (395)
Q Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (395)
+|. +.++..|........ +....|..+
T Consensus 316 ~~~~l~~l~~~~~~~~~~~--~~~~~C~~p 343 (353)
T 2z80_A 316 SCPRIDYLSRWLNKNSQKE--QGSAKCSGS 343 (353)
T ss_dssp CHHHHHHHHHHHHHTTTTE--ESCCBBTTT
T ss_pred cCCCcHHHHHHHHhccccC--CCCcccCCC
Confidence 875 555555554333222 344555544
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=2e-21 Score=191.60 Aligned_cols=145 Identities=20% Similarity=0.185 Sum_probs=109.9
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEcc
Q 044913 112 ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLS 191 (395)
Q Consensus 112 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (395)
+|++|++++|.+++..|..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 44455555555554556667778888888888888887778888888888888888888887778888888999999999
Q ss_pred CCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc--ccccCCccCcCCC-CCCCccCCCC
Q 044913 192 FNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG--FLYENNLELCGVG-FSALKTCSAS 256 (395)
Q Consensus 192 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~~~-~~~~~~~~~~ 256 (395)
+|.+++..|..+..+++|++|++++|++++..+..+..+..+ ....+|+..|+|+ ..++..|...
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHh
Confidence 999887778888889999999999999987666555554443 2345777889987 5556666543
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=3.7e-20 Score=170.20 Aligned_cols=163 Identities=23% Similarity=0.233 Sum_probs=150.1
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|+|++|.+....+..|.++++|++|+|++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 45899999999999988888889999999999999999988888899999999999999999988788899999999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 99999997777779999999999999999998777789999999999999999997777778999999999999999987
Q ss_pred CCC
Q 044913 222 SVP 224 (395)
Q Consensus 222 ~~p 224 (395)
...
T Consensus 220 ~c~ 222 (270)
T 2o6q_A 220 TCN 222 (270)
T ss_dssp SSS
T ss_pred CCc
Confidence 544
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=187.38 Aligned_cols=177 Identities=20% Similarity=0.177 Sum_probs=153.6
Q ss_pred CCCeeecCC----------CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCC
Q 044913 53 SFEGIACNE----------KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNN 122 (395)
Q Consensus 53 ~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 122 (395)
.|..|.|.. ..+++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456677742 2368899999999999888999999999999999999998889999999999999999999
Q ss_pred CCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhh
Q 044913 123 LSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRK 202 (395)
Q Consensus 123 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 202 (395)
++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99665667899999999999999999888888999999999999999999888888999999999999999999777778
Q ss_pred hcCCCCCcEEEccCCCCCCCCChhhhc
Q 044913 203 LADAPLLEVLDIRNNTLSGSVPPALKR 229 (395)
Q Consensus 203 l~~l~~L~~L~l~~N~l~~~~p~~l~~ 229 (395)
+..+++|+.|++++|.+.+..+..+..
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~ 198 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKR 198 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCS
T ss_pred hcccCCCcEEeCCCCcCcEeChhhccc
Confidence 888999999999999888766655543
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.5e-21 Score=198.19 Aligned_cols=208 Identities=21% Similarity=0.219 Sum_probs=172.6
Q ss_pred cccCCCCCcEEEccCCCCCCCC-ccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCC-CCCCccccCCCC
Q 044913 82 AIAGLKHLTGLYLHYNSLYGQI-PREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQL-TGSIPTQLGSLR 159 (395)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~ 159 (395)
.+..+++|+.+++..+...... +..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+ .+..|..|..++
T Consensus 415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 3455666777777666555443 35678889999999999999988888999999999999999974 445788899999
Q ss_pred CCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhcc-Ccc--ccc
Q 044913 160 KLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRL-NEG--FLY 236 (395)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l-~~l--~~~ 236 (395)
+|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+..+ ..+ ...
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 99999999999999889999999999999999999998888899999999999999999999999888765 233 346
Q ss_pred cCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCC
Q 044913 237 ENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIPETANVNLPCNQ 290 (395)
Q Consensus 237 ~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (395)
.+|++.|+|...||..|..........+..+.|..|...++.+.... +..|+-
T Consensus 575 ~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~-~~~C~~ 627 (635)
T 4g8a_A 575 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL-NITCQM 627 (635)
T ss_dssp TTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC-CCCC--
T ss_pred eCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee-ccCCCC
Confidence 78999999999999999876666556667889999999888876655 345654
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=187.47 Aligned_cols=216 Identities=18% Similarity=0.110 Sum_probs=158.4
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCC-----
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGS----- 136 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~----- 136 (395)
..+++.|+|++|.+.+..+..|.++++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+..+..|..+++
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 346788888888888777777888888888888888877666666777777777777777776555555555554
Q ss_pred -------------------ccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCC
Q 044913 137 -------------------LQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 137 -------------------L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 197 (395)
|+.|++++|.++...+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 4555555566664444567888999999999999987777888999999999999999998
Q ss_pred cchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc--ccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 044913 198 SIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG--FLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAATTHST 275 (395)
Q Consensus 198 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (395)
..|..+..+++|+.|++++|.+++..+..+..+..+ ....+|+..|+|...|+..+...... ......|..|...
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~---~~~~~~C~~p~~~ 363 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNF---NRQQPTCATPEFV 363 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCC---TTCCCBEEESGGG
T ss_pred ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhcccc---CccCceeCCchHH
Confidence 888899999999999999999997666666554433 33567888999998887665432221 2234566666655
Q ss_pred CCCCC
Q 044913 276 RNIPE 280 (395)
Q Consensus 276 ~~~~~ 280 (395)
.+...
T Consensus 364 ~g~~l 368 (477)
T 2id5_A 364 QGKEF 368 (477)
T ss_dssp TTCBG
T ss_pred cCCch
Confidence 54443
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=4.3e-20 Score=176.99 Aligned_cols=181 Identities=24% Similarity=0.199 Sum_probs=151.7
Q ss_pred EEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccC-CCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecC
Q 044913 67 NISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIA-NLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145 (395)
Q Consensus 67 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 145 (395)
.++++++.+.. +|..+ .+.++.|+|++|.|++..+..+. .+++|++|+|++|.|++..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 67788888875 44444 34689999999999988888887 9999999999999999777788999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhh---cCCCCCcEEEccCCCCCCC
Q 044913 146 QLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKL---ADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 146 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~l~~N~l~~~ 222 (395)
.++...+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++..+..+ ..+++|+.|++++|+++..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9997777889999999999999999998888899999999999999999996555555 5689999999999999966
Q ss_pred CChhhhccCcc----ccccCCccCcCCCCCCC
Q 044913 223 VPPALKRLNEG----FLYENNLELCGVGFSAL 250 (395)
Q Consensus 223 ~p~~l~~l~~l----~~~~~n~~~c~~~~~~~ 250 (395)
.+..+..+..+ ....+|++.|+|.+.++
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~ 210 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred CHHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence 55667766542 45678999999987653
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=9.6e-20 Score=186.07 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCC--CCCCeeecCC-----------------CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCC
Q 044913 39 YLSSWTINGDPCD--GSFEGIACNE-----------------KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSL 99 (395)
Q Consensus 39 ~l~~W~~~~~~c~--~~~~gv~c~~-----------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 99 (395)
.+.+|.++.+||. ..|.++.|+. ..+++.+++++|.+....+..|..+++|+.|+|++|.+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 3677876666663 1365555531 12344555555555544444455555555555555555
Q ss_pred CCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCcccc
Q 044913 100 YGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANL 179 (395)
Q Consensus 100 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 179 (395)
.+..+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.++...+..|..+++|++|++++|.+++..|..+
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 54444455555555555555555554444445555555555555555553333334555555555555555554444445
Q ss_pred CCCCCCCEEEccCCCCC
Q 044913 180 GDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 180 ~~l~~L~~L~L~~N~l~ 196 (395)
..+++|+.|++++|.++
T Consensus 168 ~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTCTTCCEEECTTSCCS
T ss_pred hcCCcCcEEECcCCCCC
Confidence 55555555555554444
No 37
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.3e-19 Score=161.60 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=136.0
Q ss_pred CCCCCCCeeecCCC----------CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEc
Q 044913 49 PCDGSFEGIACNEK----------GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYL 118 (395)
Q Consensus 49 ~c~~~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 118 (395)
.|.+.|..+.|... .+++.|+|++|.|.+..+..|..+++|+.|+|++|.+.+..|..|.++++|++|+|
T Consensus 8 ~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 8 ACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 45567888888532 37899999999999988889999999999999999999888999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCC
Q 044913 119 NVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 119 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 197 (395)
++|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|+.|++++|.+.-
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999996666678999999999999999999999999999999999999999998888889999999999999999863
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=9.3e-21 Score=192.01 Aligned_cols=194 Identities=21% Similarity=0.187 Sum_probs=167.4
Q ss_pred CCCEEEEEecCCCCCCcC--CccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCC-CCCCCCCCcc
Q 044913 62 KGQVANISLQGKGLNGKV--SPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIP-PEIGYMGSLQ 138 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~ 138 (395)
..+++.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+..+++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 357888888888887654 67788999999999999998865444 8999999999999999987666 5789999999
Q ss_pred EEEeecCCCCCCCccccCCCCCCCEEeccCccCC-CCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCC
Q 044913 139 VLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLT-GAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNN 217 (395)
Q Consensus 139 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 217 (395)
+|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 9999999999889999999999999999999997 578899999999999999999999888999999999999999999
Q ss_pred CCCCCCChhhhccCcc--ccccCCccCcCCCCCCCc-cCCCC
Q 044913 218 TLSGSVPPALKRLNEG--FLYENNLELCGVGFSALK-TCSAS 256 (395)
Q Consensus 218 ~l~~~~p~~l~~l~~l--~~~~~n~~~c~~~~~~~~-~~~~~ 256 (395)
++++..|..+..+..+ ....+|+..|+|+..++. .|...
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence 9998888777666554 335678889999877665 66544
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=2.6e-20 Score=188.90 Aligned_cols=184 Identities=23% Similarity=0.243 Sum_probs=146.4
Q ss_pred cCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCC--CCCCCCCCCCccEEEeecCCCCCCCcc-ccCCCCC
Q 044913 84 AGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGD--IPPEIGYMGSLQVLQLCYNQLTGSIPT-QLGSLRK 160 (395)
Q Consensus 84 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~ 160 (395)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 6788999999999999988999999999999999999999853 246788999999999999999974554 5788999
Q ss_pred CCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChh-hhccCcc--cccc
Q 044913 161 LSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPA-LKRLNEG--FLYE 237 (395)
Q Consensus 161 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-l~~l~~l--~~~~ 237 (395)
|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+..+ ....
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 99999999999876665544 68999999999999 67777779999999999999999 56655 6665554 3356
Q ss_pred CCccCcCCCCCCCcc-CCCCCCCCC------CCCCCCCCCC
Q 044913 238 NNLELCGVGFSALKT-CSASSNINP------SRPEPYGAAT 271 (395)
Q Consensus 238 ~n~~~c~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~ 271 (395)
+|++.|+|...++.. |........ ..+....|..
T Consensus 506 ~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 506 DNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp SCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred CCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 788999999888744 644333221 3355566654
No 40
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=4.1e-20 Score=177.15 Aligned_cols=173 Identities=24% Similarity=0.198 Sum_probs=151.7
Q ss_pred CCCCCCeeecCC----------CCCEEEEEecCCCCCCcCCcccc-CCCCCcEEEccCCCCCCCCccccCCCCCCCEEEc
Q 044913 50 CDGSFEGIACNE----------KGQVANISLQGKGLNGKVSPAIA-GLKHLTGLYLHYNSLYGQIPREIANLTELSDLYL 118 (395)
Q Consensus 50 c~~~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 118 (395)
|.|.+..+.|.. ...++.|+|++|.|++..+..|. ++++|+.|+|++|.|.+..+..|..+++|++|+|
T Consensus 16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 555677788842 23588999999999998888888 9999999999999999888889999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCcccc---CCCCCCCEEEccCCCC
Q 044913 119 NVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANL---GDLGMLMRLDLSFNHL 195 (395)
Q Consensus 119 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~N~l 195 (395)
++|.++...+..|..+++|++|+|++|.++...+..|..+++|+.|+|++|.+++..+..| ..+++|+.|+|++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999997777789999999999999999998889999999999999999999996555555 6799999999999999
Q ss_pred CCcchhhhcCCCC--CcEEEccCCCCCCC
Q 044913 196 FGSIPRKLADAPL--LEVLDIRNNTLSGS 222 (395)
Q Consensus 196 ~~~~p~~l~~l~~--L~~L~l~~N~l~~~ 222 (395)
++..+..+..++. ++.|++++|++.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCC
Confidence 9777778888887 48899999999853
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=2.2e-19 Score=185.97 Aligned_cols=169 Identities=20% Similarity=0.213 Sum_probs=154.8
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 47999999999999988889999999999999999999999999999999999999999999655567999999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhc--CCCCCcEEEccCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLA--DAPLLEVLDIRNNTLS 220 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~l~~N~l~ 220 (395)
++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988888999999999999999999998889999999999999999999988777654 5689999999999999
Q ss_pred CCCChhhhccC
Q 044913 221 GSVPPALKRLN 231 (395)
Q Consensus 221 ~~~p~~l~~l~ 231 (395)
+..|..+..+.
T Consensus 185 ~~~~~~~~~l~ 195 (680)
T 1ziw_A 185 EFSPGCFHAIG 195 (680)
T ss_dssp CBCTTGGGGSS
T ss_pred ccChhhhhhhh
Confidence 98887765443
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=8.2e-21 Score=190.55 Aligned_cols=183 Identities=24% Similarity=0.251 Sum_probs=142.5
Q ss_pred cCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCC--CCCCCCCCCCCccEEEeecCCCCCCCcc-ccCCCCC
Q 044913 84 AGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSG--DIPPEIGYMGSLQVLQLCYNQLTGSIPT-QLGSLRK 160 (395)
Q Consensus 84 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~ 160 (395)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 577888888888888888888888888889999998888885 3456678888899999999888875555 4778888
Q ss_pred CCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChh-hhccCcc--cccc
Q 044913 161 LSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPA-LKRLNEG--FLYE 237 (395)
Q Consensus 161 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-l~~l~~l--~~~~ 237 (395)
|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+..+ ....
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 99999999988877666554 78999999999998 67877779999999999999999 46654 6555544 3346
Q ss_pred CCccCcCCCCCCC-ccCCCCCCCCCCCCCCCCCCCC
Q 044913 238 NNLELCGVGFSAL-KTCSASSNINPSRPEPYGAATT 272 (395)
Q Consensus 238 ~n~~~c~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 272 (395)
+|+..|+|...++ ..|....... .+....|..|
T Consensus 477 ~N~~~c~c~~~~~~~~~~~~~~~~--~~~~~~C~~p 510 (520)
T 2z7x_B 477 TNPWDCSCPRIDYLSRWLNKNSQK--EQGSAKCSGS 510 (520)
T ss_dssp SSCBCCCHHHHHHHHHHHHHTTTT--EESCCBBTTT
T ss_pred CCCCcccCCchHHHHHHHHhcccc--CCCCCCcCCc
Confidence 7888999998888 7776543322 3345566555
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.1e-19 Score=163.91 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=142.7
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCC-CCCCCccccCCCCCCCEEEccC-CCCCCCCCCCCCCCCCccEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNS-LYGQIPREIANLTELSDLYLNV-NNLSGDIPPEIGYMGSLQVL 140 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L 140 (395)
.+++.|++++|.+.+..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.++...+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999999888899999999999999997 8877777899999999999998 99996667789999999999
Q ss_pred EeecCCCCCCCccccCCCCCCC---EEeccCc-cCCCCCccccCCCCCCC-EEEccCCCCCCcchhhhcCCCCCcEEEcc
Q 044913 141 QLCYNQLTGSIPTQLGSLRKLS---VLALQSN-QLTGAIPANLGDLGMLM-RLDLSFNHLFGSIPRKLADAPLLEVLDIR 215 (395)
Q Consensus 141 ~Ls~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 215 (395)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999995 666 88888888 9999999 99877777799999999 9999999998 555544344899999999
Q ss_pred CCC-CCCCCChhhhcc
Q 044913 216 NNT-LSGSVPPALKRL 230 (395)
Q Consensus 216 ~N~-l~~~~p~~l~~l 230 (395)
+|+ ++...+..+..+
T Consensus 188 ~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGV 203 (239)
T ss_dssp TCTTCCEECTTTTTTC
T ss_pred CCCCcccCCHHHhhcc
Confidence 995 886666666544
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=2e-19 Score=173.90 Aligned_cols=135 Identities=18% Similarity=0.157 Sum_probs=91.4
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+....+..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..|..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45667777777766655555667777777777777776666666777777777777777777665666677777777777
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 197 (395)
++|.++...+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 7777764444445667777777777777766656666666677777766666653
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=2.9e-19 Score=169.11 Aligned_cols=175 Identities=22% Similarity=0.335 Sum_probs=129.6
Q ss_pred CCCCCCeeecCCC----------CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEcc
Q 044913 50 CDGSFEGIACNEK----------GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLN 119 (395)
Q Consensus 50 c~~~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 119 (395)
|.+.+..+.|... .+++.|+|++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4347888888532 378999999999998888899999999999999999998889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCC--CCccccCCC---------------
Q 044913 120 VNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTG--AIPANLGDL--------------- 182 (395)
Q Consensus 120 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l--------------- 182 (395)
+|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence 99998 6666554 788999999998887666778888888888888888752 444444444
Q ss_pred -----CCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhh
Q 044913 183 -----GMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPAL 227 (395)
Q Consensus 183 -----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l 227 (395)
++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 234444444444444444445555555555555555554444343
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=2.3e-19 Score=183.25 Aligned_cols=166 Identities=17% Similarity=0.105 Sum_probs=153.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|..+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 47899999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCc--EEEccCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLE--VLDIRNNTLS 220 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~--~L~l~~N~l~ 220 (395)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999987788899999999999999999975444455699999999999999988889999999999 9999999999
Q ss_pred CCCChhhh
Q 044913 221 GSVPPALK 228 (395)
Q Consensus 221 ~~~p~~l~ 228 (395)
+..|..+.
T Consensus 193 ~~~~~~~~ 200 (606)
T 3t6q_A 193 GIEPGAFD 200 (606)
T ss_dssp EECTTTTT
T ss_pred ccChhHhh
Confidence 88877654
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=7.1e-19 Score=163.42 Aligned_cols=158 Identities=27% Similarity=0.233 Sum_probs=143.6
Q ss_pred CCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEE
Q 044913 61 EKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVL 140 (395)
Q Consensus 61 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 140 (395)
...+++.|+|++|.+.+..+. ..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus 53 ~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp TCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 356899999999999876443 78999999999999998 778889999999999999999997777889999999999
Q ss_pred EeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 141 QLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 141 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
++++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 99999999888888899999999999999999777777889999999999999999 67888888899999999999998
Q ss_pred CC
Q 044913 221 GS 222 (395)
Q Consensus 221 ~~ 222 (395)
+.
T Consensus 209 C~ 210 (290)
T 1p9a_G 209 CN 210 (290)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.1e-19 Score=170.00 Aligned_cols=162 Identities=23% Similarity=0.258 Sum_probs=145.8
Q ss_pred CCCEEEEEecCCCCCCcCC-ccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCC-CCCCCCCCCCCccE
Q 044913 62 KGQVANISLQGKGLNGKVS-PAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSG-DIPPEIGYMGSLQV 139 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~ 139 (395)
..+++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 3467778888887776655 578889999999999999998888999999999999999999986 57889999999999
Q ss_pred EEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCC-CCcEEEccCCC
Q 044913 140 LQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAP-LLEVLDIRNNT 218 (395)
Q Consensus 140 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~l~~N~ 218 (395)
|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999988899999999999999999999987777899999999999999999998888898885 99999999999
Q ss_pred CCCCC
Q 044913 219 LSGSV 223 (395)
Q Consensus 219 l~~~~ 223 (395)
+++..
T Consensus 260 ~~~~c 264 (306)
T 2z66_A 260 FACTC 264 (306)
T ss_dssp EECSG
T ss_pred eeccc
Confidence 98754
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.1e-19 Score=179.24 Aligned_cols=163 Identities=19% Similarity=0.194 Sum_probs=147.2
Q ss_pred CCEEEEEecCCCCCCcCCccccC---------------------------------------CCCCcEEEccCCCCCCCC
Q 044913 63 GQVANISLQGKGLNGKVSPAIAG---------------------------------------LKHLTGLYLHYNSLYGQI 103 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~---------------------------------------l~~L~~L~Ls~n~l~~~~ 103 (395)
.+++.|++++|.+.+..+..+.. .++|+.|++++|.+.+..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 46888899888887655543321 268999999999999999
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCC
Q 044913 104 PREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLG 183 (395)
Q Consensus 104 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 183 (395)
|..+..+++|++|+|++|.+++..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 99999999999999999999988888999999999999999999988899999999999999999999988899999999
Q ss_pred CCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCCh
Q 044913 184 MLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPP 225 (395)
Q Consensus 184 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 225 (395)
+|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999987777889999999999999999998883
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.8e-18 Score=152.40 Aligned_cols=156 Identities=26% Similarity=0.223 Sum_probs=138.1
Q ss_pred EEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecC
Q 044913 66 ANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145 (395)
Q Consensus 66 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 145 (395)
+.++.+++++.... ..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-TGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCC-CCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 47888888887543 322 568999999999999888888999999999999999999666667899999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCC
Q 044913 146 QLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVP 224 (395)
Q Consensus 146 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 224 (395)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 9997777778999999999999999998777778999999999999999998777778999999999999999987665
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=4e-20 Score=173.64 Aligned_cols=174 Identities=23% Similarity=0.193 Sum_probs=128.2
Q ss_pred CCEEEEEecCCCCCCcCCccc--cCCCCCcEEEccCCCCCCCCccccCCC-----CCCCEEEccCCCCCCCCCCCCCCCC
Q 044913 63 GQVANISLQGKGLNGKVSPAI--AGLKHLTGLYLHYNSLYGQIPREIANL-----TELSDLYLNVNNLSGDIPPEIGYMG 135 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~ 135 (395)
.++++|+|++|.+.+..|..+ ..+++|++|+|++|.+++. |..+..+ ++|++|+|++|.+++..|..|..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 468888888888888777776 7888888888888888866 7666666 7888888888888877777888888
Q ss_pred CccEEEeecCCCCCC--Ccccc--CCCCCCCEEeccCccCCCC--Cc-cccCCCCCCCEEEccCCCCCCcch-hhhcCCC
Q 044913 136 SLQVLQLCYNQLTGS--IPTQL--GSLRKLSVLALQSNQLTGA--IP-ANLGDLGMLMRLDLSFNHLFGSIP-RKLADAP 207 (395)
Q Consensus 136 ~L~~L~Ls~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~~--~p-~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~ 207 (395)
+|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. ++ ..+..+++|+.|++++|.+++..| ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 888888888887654 23333 7788888888888888731 12 334577888888888888887654 4455678
Q ss_pred CCcEEEccCCCCCCCCChhhh-ccCccccccC
Q 044913 208 LLEVLDIRNNTLSGSVPPALK-RLNEGFLYEN 238 (395)
Q Consensus 208 ~L~~L~l~~N~l~~~~p~~l~-~l~~l~~~~~ 238 (395)
+|+.|++++|.++ .+|..+. +++.+.+..|
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N 284 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYN 284 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCCSEEEEEECCSS
T ss_pred CCCEEECCCCccC-hhhhhccCCceEEECCCC
Confidence 8888888888887 6666553 4555444443
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=3.7e-20 Score=186.86 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=135.2
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|+.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 37899999999999888889999999999999999999888889999999999999999999766666899999999999
Q ss_pred ecCCCCC-CCccccCCCCCCCEEeccCccCCCCCc-cccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 143 CYNQLTG-SIPTQLGSLRKLSVLALQSNQLTGAIP-ANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 143 s~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999886 356788899999999999998544444 67888999999999999998888888877777777777777664
No 53
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=159.61 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=135.7
Q ss_pred CCCCCCCeeecCCC----------CCEEEEEecCCCCCCcCC-ccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEE
Q 044913 49 PCDGSFEGIACNEK----------GQVANISLQGKGLNGKVS-PAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLY 117 (395)
Q Consensus 49 ~c~~~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 117 (395)
.|.|.|..+.|... ..++.|+|++|.+.+..+ ..|..+++|+.|+|++|.+++..+..|.++++|++|+
T Consensus 8 ~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 8 KCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 35557788887532 257899999999998855 5689999999999999999988888999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCC
Q 044913 118 LNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 118 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 197 (395)
|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+..
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99999997777789999999999999999999889999999999999999999998889999999999999999999985
Q ss_pred cc
Q 044913 198 SI 199 (395)
Q Consensus 198 ~~ 199 (395)
.-
T Consensus 168 ~c 169 (220)
T 2v70_A 168 NC 169 (220)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=9.4e-19 Score=165.38 Aligned_cols=172 Identities=23% Similarity=0.365 Sum_probs=125.9
Q ss_pred CCCCCCeeecCC----------CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEcc
Q 044913 50 CDGSFEGIACNE----------KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLN 119 (395)
Q Consensus 50 c~~~~~gv~c~~----------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 119 (395)
|.+.+..+.|.. ..+++.|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 444788888852 2478999999999999888899999999999999999998889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCC--CCccccCCCCCCCEEEccCCCCCC
Q 044913 120 VNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTG--AIPANLGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 120 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~ 197 (395)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99998 6666554 678888888888876666667777777777777777753 445556666666666666665552
Q ss_pred cchhhhcCCCCCcEEEccCCCCCCCCChhh
Q 044913 198 SIPRKLADAPLLEVLDIRNNTLSGSVPPAL 227 (395)
Q Consensus 198 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l 227 (395)
+|..+. ++|+.|++++|.+++..|..+
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGG
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHh
Confidence 232221 445555555555544444443
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=2.5e-19 Score=183.03 Aligned_cols=166 Identities=22% Similarity=0.184 Sum_probs=149.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 57999999999999999999999999999999999999888999999999999999999999888999999999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCC-CCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCC----cEEEccCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTG-AIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLL----EVLDIRNN 217 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L~l~~N 217 (395)
++|.+++..+..++.+++|++|++++|.+.+ .+|..++.+++|++|++++|.+++..+..+..+.+| ..|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999998887889999999999999999986 579999999999999999999998777766665544 48999999
Q ss_pred CCCCCCChhhh
Q 044913 218 TLSGSVPPALK 228 (395)
Q Consensus 218 ~l~~~~p~~l~ 228 (395)
.+++..+..+.
T Consensus 192 ~l~~~~~~~~~ 202 (606)
T 3vq2_A 192 PIDFIQDQAFQ 202 (606)
T ss_dssp CCCEECTTTTT
T ss_pred CcceeCccccc
Confidence 98866555543
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2.4e-19 Score=161.66 Aligned_cols=171 Identities=18% Similarity=0.116 Sum_probs=147.8
Q ss_pred CCCEEEEEecCCC-CCCcCCccccCCCCCcEEEccC-CCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCcc-
Q 044913 62 KGQVANISLQGKG-LNGKVSPAIAGLKHLTGLYLHY-NSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQ- 138 (395)
Q Consensus 62 ~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~- 138 (395)
..+++.|++++|. +....+..|.++++|++|++++ |.++...+..|.++++|++|++++|.+++ +|. |..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI 131 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence 4589999999997 8888888999999999999999 99998778899999999999999999995 676 88888888
Q ss_pred --EEEeecC-CCCCCCccccCCCCCCC-EEeccCccCCCCCccccCCCCCCCEEEccCCC-CCCcchhhhcCC-CCCcEE
Q 044913 139 --VLQLCYN-QLTGSIPTQLGSLRKLS-VLALQSNQLTGAIPANLGDLGMLMRLDLSFNH-LFGSIPRKLADA-PLLEVL 212 (395)
Q Consensus 139 --~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L 212 (395)
+|++++| .++...+..|..+++|+ +|++++|.++ .+|......++|+.|++++|. +++..+..+..+ ++|+.|
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 9999999 99977777899999999 9999999999 555443334899999999995 986667788999 999999
Q ss_pred EccCCCCCCCCChhhhccCcccc
Q 044913 213 DIRNNTLSGSVPPALKRLNEGFL 235 (395)
Q Consensus 213 ~l~~N~l~~~~p~~l~~l~~l~~ 235 (395)
++++|++++..+..+.+++.+.+
T Consensus 211 ~l~~N~l~~l~~~~~~~L~~L~l 233 (239)
T 2xwt_C 211 DVSQTSVTALPSKGLEHLKELIA 233 (239)
T ss_dssp ECTTCCCCCCCCTTCTTCSEEEC
T ss_pred ECCCCccccCChhHhccCceeec
Confidence 99999999655555777776644
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=3.4e-19 Score=164.12 Aligned_cols=163 Identities=21% Similarity=0.206 Sum_probs=133.7
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 35788899999988888778888889999999999988877778888888899999988888866666788888888888
Q ss_pred eecCCCCCC-CccccCCCCCCCEEeccCccCCCCCccccC---------------------------CCCCCCEEEccCC
Q 044913 142 LCYNQLTGS-IPTQLGSLRKLSVLALQSNQLTGAIPANLG---------------------------DLGMLMRLDLSFN 193 (395)
Q Consensus 142 Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~---------------------------~l~~L~~L~L~~N 193 (395)
+++|.+.+. +|..+..+++|++|++++|.+++..+..+. ...+|+.|++++|
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence 888888764 578888888888888888887754333221 2237889999999
Q ss_pred CCCCcchhhhcCCCCCcEEEccCCCCCCCCC
Q 044913 194 HLFGSIPRKLADAPLLEVLDIRNNTLSGSVP 224 (395)
Q Consensus 194 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 224 (395)
.+++..+..+..+++|+.|++++|++.+..|
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9997767778999999999999999998765
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=3.5e-19 Score=182.25 Aligned_cols=165 Identities=22% Similarity=0.159 Sum_probs=143.3
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
..+++|+|++|.|+...+.+|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37899999999999988899999999999999999999888889999999999999999999666678999999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCC-CCccccCCCCCCCEEEccCCCCCCcchhhhcCCCC----CcEEEccCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTG-AIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPL----LEVLDIRNN 217 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~----L~~L~l~~N 217 (395)
++|.+++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.+ +..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999998777889999999999999999986 46788899999999999999999877776654433 347888888
Q ss_pred CCCCCCChhh
Q 044913 218 TLSGSVPPAL 227 (395)
Q Consensus 218 ~l~~~~p~~l 227 (395)
.+....+..+
T Consensus 212 ~l~~i~~~~~ 221 (635)
T 4g8a_A 212 PMNFIQPGAF 221 (635)
T ss_dssp CCCEECTTTT
T ss_pred cccccCcccc
Confidence 8876555443
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=188.12 Aligned_cols=174 Identities=20% Similarity=0.190 Sum_probs=149.6
Q ss_pred CCCeeecCCCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCC-ccccCCCCCCCEEEccCCCCCCCCCCCC
Q 044913 53 SFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQI-PREIANLTELSDLYLNVNNLSGDIPPEI 131 (395)
Q Consensus 53 ~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 131 (395)
.|..|.+ -..+++.|+|++|.+++..+..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|
T Consensus 15 ~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 15 NLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp CSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 5777776 5678999999999999999999999999999999999766555 7889999999999999999998889999
Q ss_pred CCCCCccEEEeecCCCCCCCccc--cCCCCCCCEEeccCccCCCCCc-cccCCCCCCCEEEccCCCCCCcchhhhcCC--
Q 044913 132 GYMGSLQVLQLCYNQLTGSIPTQ--LGSLRKLSVLALQSNQLTGAIP-ANLGDLGMLMRLDLSFNHLFGSIPRKLADA-- 206 (395)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-- 206 (395)
..+++|++|+|++|.+++..|.. +..+++|++|++++|.+++..+ ..|+.+++|++|++++|.+++..+..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999999999999866655 8999999999999999987654 578999999999999999988777777665
Q ss_pred CCCcEEEccCCCCCCCCChhh
Q 044913 207 PLLEVLDIRNNTLSGSVPPAL 227 (395)
Q Consensus 207 ~~L~~L~l~~N~l~~~~p~~l 227 (395)
++|+.|++++|.+.+..|..+
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCC
T ss_pred CccceEECCCCccccccccch
Confidence 677777777777776665543
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1.6e-18 Score=163.72 Aligned_cols=160 Identities=26% Similarity=0.322 Sum_probs=100.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCC--CCCCCCCCCCCccEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSG--DIPPEIGYMGSLQVL 140 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L 140 (395)
.++++|+|++|.+.. +|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|
T Consensus 100 ~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 467777777777763 333332 567777777777766666666677777777777776642 445566666666666
Q ss_pred EeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 141 QLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 141 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
++++|.+. .+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 177 ~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 177 RIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 66666666 3343332 56666666666666555666666666666666666666555555666666666666666666
Q ss_pred CCCChhhhc
Q 044913 221 GSVPPALKR 229 (395)
Q Consensus 221 ~~~p~~l~~ 229 (395)
.+|..+..
T Consensus 254 -~lp~~l~~ 261 (330)
T 1xku_A 254 -KVPGGLAD 261 (330)
T ss_dssp -SCCTTTTT
T ss_pred -cCChhhcc
Confidence 55555443
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.7e-18 Score=176.75 Aligned_cols=111 Identities=24% Similarity=0.221 Sum_probs=83.8
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|..+++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..+..|..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 46777888888877777777778888888888888877777777777888888888888777444445677778888888
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTG 173 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 173 (395)
++|.+++..|..|..+++|++|++++|.+++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 8887777777777777777777777777664
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=2.4e-18 Score=166.33 Aligned_cols=167 Identities=23% Similarity=0.206 Sum_probs=120.7
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.++...+..|..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 47888888888888877778888888888888888888877888888888888888888888444444688888888888
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCC-------------------------------------CCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDL-------------------------------------GML 185 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-------------------------------------~~L 185 (395)
++|.+.+..+..+..+++|++|++++|.+++.....+..+ ++|
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 228 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence 8888887777778888888888888888775322222211 234
Q ss_pred CEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccC
Q 044913 186 MRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLN 231 (395)
Q Consensus 186 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~ 231 (395)
+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+.
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 5555555555532 3456667777777777777766666554433
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.5e-18 Score=151.69 Aligned_cols=151 Identities=22% Similarity=0.304 Sum_probs=131.7
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 47899999999998 444 6899999999999999775 3457899999999999999999878899999999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCcc-CCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQ-LTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9999998888999999999999999998 66 555 68899999999999999986 33 68889999999999999864
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.3e-19 Score=180.53 Aligned_cols=130 Identities=25% Similarity=0.212 Sum_probs=63.6
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccC-CCCCCCEEeccCccCCCCCccccCCCCCCCEEEc
Q 044913 112 ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLG-SLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDL 190 (395)
Q Consensus 112 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 190 (395)
+|+.|+|++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++. |. ...+++|+.|+|
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L 198 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL 198 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEEC
Confidence 344444444444444444445555555555555555544444443 455555555555555533 11 223555666666
Q ss_pred cCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc--ccccCCccCcCC
Q 044913 191 SFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG--FLYENNLELCGV 245 (395)
Q Consensus 191 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~~ 245 (395)
++|.+++. |..+..+++|+.|++++|.+++ +|..+..+..+ ....+|+..|++
T Consensus 199 s~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 199 SSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 66666543 3335556666666666666653 44444333322 122344445544
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=3e-18 Score=162.05 Aligned_cols=159 Identities=25% Similarity=0.312 Sum_probs=99.0
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCC--CCCCCCCCCCCccE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSG--DIPPEIGYMGSLQV 139 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~ 139 (395)
..++++|+|++|.+.. +|..+. ++|++|++++|.+....+..|..+++|++|++++|.++. ..|..+..+ +|++
T Consensus 101 l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred cCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 3577888888888773 343332 678888888888876666677778888888888887752 455666665 6666
Q ss_pred EEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCC
Q 044913 140 LQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTL 219 (395)
Q Consensus 140 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 219 (395)
|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 177 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 177 LRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred EECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 6666666653 333322 4555666666666555555555566666666666666555555555556666666666655
Q ss_pred CCCCChhhh
Q 044913 220 SGSVPPALK 228 (395)
Q Consensus 220 ~~~~p~~l~ 228 (395)
+ .+|..+.
T Consensus 254 ~-~lp~~l~ 261 (332)
T 2ft3_A 254 S-RVPAGLP 261 (332)
T ss_dssp C-BCCTTGG
T ss_pred e-ecChhhh
Confidence 5 4554443
No 66
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=7.7e-19 Score=153.05 Aligned_cols=112 Identities=24% Similarity=0.270 Sum_probs=59.7
Q ss_pred CCCEEEccCCCCCCCCCC-CCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEc
Q 044913 112 ELSDLYLNVNNLSGDIPP-EIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDL 190 (395)
Q Consensus 112 ~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 190 (395)
+|++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 344444444444422222 2444444444444444444444444555555555555555555444455555666666666
Q ss_pred cCCCCCCcchhhhcCCCCCcEEEccCCCCCCCC
Q 044913 191 SFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSV 223 (395)
Q Consensus 191 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 223 (395)
++|++++..|..+..+++|++|++++|++.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 666666555666666667777777777666443
No 67
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=7.9e-19 Score=153.16 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=88.9
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEcc
Q 044913 112 ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLS 191 (395)
Q Consensus 112 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (395)
+|++|+|++|.++ .+|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444455555444 444445555555555555555554444555555666666666666665555666677777777777
Q ss_pred CCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCccccccCCccCcCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 044913 192 FNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEGFLYENNLELCGVGFSALKTCSASSNINPSRPEPYGAAT 271 (395)
Q Consensus 192 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l~~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (395)
+|.++...+..|..+++|+.|++++|++. |+|.+.|+..|...... .+....|..
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~----------------------C~c~l~~l~~~~~~~~~---~~~~~~C~~ 165 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY----------------------CDCNMQWLSDWVKSEYK---EPGIARCAG 165 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE----------------------CSGGGHHHHHHHHHSSC---CCSCCBEEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee----------------------cCCcCHHHHHHHHhccC---CCCCcCcCC
Confidence 77777555556777888888888887774 77877777777654322 234567777
Q ss_pred CCCCCCCCCC
Q 044913 272 THSTRNIPET 281 (395)
Q Consensus 272 ~~~~~~~~~~ 281 (395)
|...++....
T Consensus 166 P~~l~g~~l~ 175 (193)
T 2wfh_A 166 PGEMADKLLL 175 (193)
T ss_dssp SGGGTTCBTT
T ss_pred chHHCCCCcc
Confidence 7766665443
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=174.43 Aligned_cols=167 Identities=23% Similarity=0.176 Sum_probs=152.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47899999999999999999999999999999999999888899999999999999999999777889999999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCC-CCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCC----cEEEccCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTG-AIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLL----EVLDIRNN 217 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L~l~~N 217 (395)
++|.++...+..++.+++|++|++++|.+++ .+|..++.+++|++|++++|.+++..+..+..+++| ..|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999997766679999999999999999987 479999999999999999999998777778777777 89999999
Q ss_pred CCCCCCChhhhc
Q 044913 218 TLSGSVPPALKR 229 (395)
Q Consensus 218 ~l~~~~p~~l~~ 229 (395)
.+++..|..+..
T Consensus 188 ~l~~~~~~~~~~ 199 (570)
T 2z63_A 188 PMNFIQPGAFKE 199 (570)
T ss_dssp CCCEECTTTTTT
T ss_pred CceecCHHHhcc
Confidence 999877776643
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=8.2e-19 Score=164.46 Aligned_cols=173 Identities=19% Similarity=0.134 Sum_probs=135.1
Q ss_pred CEEEEEecCCCCCCcCCccc--cCCCCCcEEEccCCCCCCCCc----cccCCCCCCCEEEccCCCCCCCCCCCCCCCCCc
Q 044913 64 QVANISLQGKGLNGKVSPAI--AGLKHLTGLYLHYNSLYGQIP----REIANLTELSDLYLNVNNLSGDIPPEIGYMGSL 137 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 137 (395)
++++|++++|.+.+..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+++..|..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 48889999999998888887 889999999999999887555 445678899999999999987777888899999
Q ss_pred cEEEeecCCCCCC--C--ccccCCCCCCCEEeccCccCCCCCcc----ccCCCCCCCEEEccCCCCCCcchhhhcCC---
Q 044913 138 QVLQLCYNQLTGS--I--PTQLGSLRKLSVLALQSNQLTGAIPA----NLGDLGMLMRLDLSFNHLFGSIPRKLADA--- 206 (395)
Q Consensus 138 ~~L~Ls~n~l~~~--~--p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--- 206 (395)
++|++++|.+.+. + +..+..+++|++|++++|.++ .++. .+..+++|++|+|++|.+++..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999987642 2 233467888999999999887 3333 35677889999999999988777766665
Q ss_pred CCCcEEEccCCCCCCCCChhh-hccCccccccC
Q 044913 207 PLLEVLDIRNNTLSGSVPPAL-KRLNEGFLYEN 238 (395)
Q Consensus 207 ~~L~~L~l~~N~l~~~~p~~l-~~l~~l~~~~~ 238 (395)
++|++|++++|+++ .+|..+ .+++.+.+..|
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N 282 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSN 282 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCCSCCSCEECCSC
T ss_pred CcCCEEECCCCCCC-chhhhhcCCCCEEECCCC
Confidence 68999999999988 566554 35555554443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=3.6e-19 Score=167.09 Aligned_cols=166 Identities=23% Similarity=0.226 Sum_probs=139.6
Q ss_pred CCCEEEEEecCCCCCCcCCccccCC-----CCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCC--CCCCC--C
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGL-----KHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGD--IPPEI--G 132 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~--~ 132 (395)
..+++.|+|++|.+.+. |..+..+ ++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+. .|..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 45899999999999988 8888877 9999999999999988889999999999999999998754 23333 8
Q ss_pred CCCCccEEEeecCCCCCC--Cc-cccCCCCCCCEEeccCccCCCCCc-cccCCCCCCCEEEccCCCCCCcchhhhcCCCC
Q 044913 133 YMGSLQVLQLCYNQLTGS--IP-TQLGSLRKLSVLALQSNQLTGAIP-ANLGDLGMLMRLDLSFNHLFGSIPRKLADAPL 208 (395)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~--~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 208 (395)
.+++|++|++++|.+++. .+ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 899999999999999832 22 344678999999999999998775 55677899999999999999 6777665 89
Q ss_pred CcEEEccCCCCCCCCChhhhccCcc
Q 044913 209 LEVLDIRNNTLSGSVPPALKRLNEG 233 (395)
Q Consensus 209 L~~L~l~~N~l~~~~p~~l~~l~~l 233 (395)
|+.|++++|++++. |. +..+..+
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCC
Confidence 99999999999976 55 5554443
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=3.2e-18 Score=168.88 Aligned_cols=162 Identities=19% Similarity=0.182 Sum_probs=124.9
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCC-----------
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPE----------- 130 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----------- 130 (395)
..+++.|+|++|.+.+..+..|.++++|++|+|++|.++...+..|..+++|++|+|++|.++...+..
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 346777777777777777777777777777777777777665666666666666666666655322211
Q ss_pred ------------------------------------CCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCC
Q 044913 131 ------------------------------------IGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGA 174 (395)
Q Consensus 131 ------------------------------------~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 174 (395)
+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++.
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE
Confidence 23344555666666666666788899999999999999999988
Q ss_pred CccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCC
Q 044913 175 IPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSV 223 (395)
Q Consensus 175 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 223 (395)
.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 8999999999999999999999877788899999999999999998643
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=168.10 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=132.5
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccc-------------------------cCCCCCCCEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPRE-------------------------IANLTELSDL 116 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-------------------------~~~l~~L~~L 116 (395)
..+++.|+|++|.+....+..|..+++|++|+|++|.+....+.. |.++++|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 457889999999888777778888888888888888877544433 4455566666
Q ss_pred EccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCC
Q 044913 117 YLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 117 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 196 (395)
+|++|.++ .+| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|+++
T Consensus 191 ~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 191 NLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp ECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 66666666 444 3677788888888888888888899999999999999999999888899999999999999999999
Q ss_pred CcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 197 GSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 197 ~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
+..+..+..+++|+.|++++|++.+.
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ccChhHhccccCCCEEEcCCCCccCC
Confidence 88888889999999999999999853
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=163.32 Aligned_cols=174 Identities=20% Similarity=0.149 Sum_probs=143.6
Q ss_pred CCCEEEEEecCCCCCCcCC----ccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCC--C--CCCCCC
Q 044913 62 KGQVANISLQGKGLNGKVS----PAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGD--I--PPEIGY 133 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~ 133 (395)
..+++.|+|++|.+.+..+ ..+..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+. + +..+..
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 4579999999999997655 4456799999999999999988889999999999999999998642 2 234578
Q ss_pred CCCccEEEeecCCCCCCCcc----ccCCCCCCCEEeccCccCCCCCccccCCC---CCCCEEEccCCCCCCcchhhhcCC
Q 044913 134 MGSLQVLQLCYNQLTGSIPT----QLGSLRKLSVLALQSNQLTGAIPANLGDL---GMLMRLDLSFNHLFGSIPRKLADA 206 (395)
Q Consensus 134 l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l 206 (395)
+++|++|++++|.++ .++. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 196 l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-- 271 (310)
T 4glp_A 196 FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-- 271 (310)
T ss_dssp SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--
Confidence 999999999999997 3333 35778999999999999998878777776 69999999999999 6677664
Q ss_pred CCCcEEEccCCCCCC-CCChhhhccCccccccCC
Q 044913 207 PLLEVLDIRNNTLSG-SVPPALKRLNEGFLYENN 239 (395)
Q Consensus 207 ~~L~~L~l~~N~l~~-~~p~~l~~l~~l~~~~~n 239 (395)
++|+.|++++|++++ +.+..+.+++.+.+..|.
T Consensus 272 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 799999999999997 455666677766665543
No 74
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.3e-17 Score=149.37 Aligned_cols=137 Identities=25% Similarity=0.229 Sum_probs=127.0
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|+|++|.+.+..+..|.++++|+.|+|++|.+....+..|..+++|++|+|++|.+++..+..|..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 46899999999999999999999999999999999999877778889999999999999999977777789999999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcc
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSI 199 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 199 (395)
+++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999999 78888999999999999999999777788999999999999999998643
No 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=5.3e-19 Score=186.38 Aligned_cols=163 Identities=22% Similarity=0.320 Sum_probs=144.5
Q ss_pred CCCEEEEEecCCCCCC-----------------cCCcccc--CCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCC
Q 044913 62 KGQVANISLQGKGLNG-----------------KVSPAIA--GLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNN 122 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 122 (395)
..+++.|+|++|.+.+ .+|..++ ++++|+.|+|++|.+.+.+|..|.++++|++|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4689999999999998 3888877 99999999999999999999999999999999999998
Q ss_pred -CCC-CCCCCCC-------CCCCccEEEeecCCCCCCCcc--ccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEcc
Q 044913 123 -LSG-DIPPEIG-------YMGSLQVLQLCYNQLTGSIPT--QLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLS 191 (395)
Q Consensus 123 -l~~-~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (395)
+++ .+|..++ .+++|++|++++|.++ .+|. .++.+++|++|++++|.++ .+| .+..+++|+.|+|+
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 887 6776444 4559999999999999 8888 8999999999999999999 788 88999999999999
Q ss_pred CCCCCCcchhhhcCCCC-CcEEEccCCCCCCCCChhhhc
Q 044913 192 FNHLFGSIPRKLADAPL-LEVLDIRNNTLSGSVPPALKR 229 (395)
Q Consensus 192 ~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~p~~l~~ 229 (395)
+|.++ .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 99999 78888888988 999999999998 77876543
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=1.3e-17 Score=171.59 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=78.9
Q ss_pred CEEEEEecCCCCCCcCCcccc-------CCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCC-C-
Q 044913 64 QVANISLQGKGLNGKVSPAIA-------GLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGY-M- 134 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l- 134 (395)
+++.|++++|.+.+..|..|. .+++|+.|+|++|.++...+..+..+++|++|+|++|.++ .+|..+.. +
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 355555555555554444444 4445555555555555322233344555555555555555 33332221 1
Q ss_pred ------CCccEEEeecCCCCCCCccccC--CCCCCCEEeccCccCCCCCccccCCCCCCCEEEc------cCCCCCCcch
Q 044913 135 ------GSLQVLQLCYNQLTGSIPTQLG--SLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDL------SFNHLFGSIP 200 (395)
Q Consensus 135 ------~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L------~~N~l~~~~p 200 (395)
++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++ ++|++.+.+|
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 15555555555555 4444444 55555555555555554 4555555555555555 3344455555
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCCh
Q 044913 201 RKLADAPLLEVLDIRNNTLSGSVPP 225 (395)
Q Consensus 201 ~~l~~l~~L~~L~l~~N~l~~~~p~ 225 (395)
..+..+++|+.|++++|++ +.+|.
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HHHhcCCCCCEEECCCCcC-CccCH
Confidence 5555555555555555555 34444
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=9.6e-18 Score=168.17 Aligned_cols=160 Identities=24% Similarity=0.318 Sum_probs=143.5
Q ss_pred CCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCC--CCccccCCCCCCCEEEccCCCCCCCCCC-CCCCCCCc
Q 044913 61 EKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYG--QIPREIANLTELSDLYLNVNNLSGDIPP-EIGYMGSL 137 (395)
Q Consensus 61 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L 137 (395)
...+++.|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+++.+|. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 45689999999999999999999999999999999999996 5678899999999999999999975665 48899999
Q ss_pred cEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchh-hhcCCCCCcEEEccC
Q 044913 138 QVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPR-KLADAPLLEVLDIRN 216 (395)
Q Consensus 138 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~l~~ 216 (395)
++|++++|.+++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|++++ +|. .+..+++|+.|++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcC
Confidence 9999999999988777664 79999999999999 788877799999999999999995 555 488999999999999
Q ss_pred CCCCCCCC
Q 044913 217 NTLSGSVP 224 (395)
Q Consensus 217 N~l~~~~p 224 (395)
|++++..+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99997655
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=8.8e-19 Score=164.80 Aligned_cols=178 Identities=22% Similarity=0.198 Sum_probs=104.0
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCcc----------------ccCCCCCCCEEEccCCCCCC
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPR----------------EIANLTELSDLYLNVNNLSG 125 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~----------------~~~~l~~L~~L~L~~n~l~~ 125 (395)
..+++.|+|++|.+.+..+ +..+++|++|++++|.+++..+. ....+++|++|++++|.+++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCS
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCC
Confidence 3467778888877776544 77777777777777766532110 01223455555555555554
Q ss_pred CCCCCCCCCCCccEEEeecCCCCCCCcccc-CCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhc
Q 044913 126 DIPPEIGYMGSLQVLQLCYNQLTGSIPTQL-GSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLA 204 (395)
Q Consensus 126 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 204 (395)
..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.+++ +|..+.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~ 211 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQ 211 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGG
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhc
Confidence 445556666666666666666665555544 3566666666666666633 22 2246667777777777763 344466
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhccCcc--ccccCCccCcCC
Q 044913 205 DAPLLEVLDIRNNTLSGSVPPALKRLNEG--FLYENNLELCGV 245 (395)
Q Consensus 205 ~l~~L~~L~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~~ 245 (395)
.+++|+.|++++|+++ .+|..+..+..+ ....+|+..|++
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcC
Confidence 6777777777777776 345554433332 122344445554
No 79
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=158.86 Aligned_cols=175 Identities=18% Similarity=0.145 Sum_probs=150.1
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+.+..+..|.++++|+.|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 37999999999999888889999999999999999999888899999999999999999999544445899999999999
Q ss_pred ecCCCCCCCc-cccCCCCCCCEEeccCcc-CCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 143 CYNQLTGSIP-TQLGSLRKLSVLALQSNQ-LTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 143 s~n~l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
++|.+....+ ..+..+++|++|++++|. +....+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999995444 478999999999999994 76666788999999999999999999888999999999999999999986
Q ss_pred CCCChh-h---hccCccccccC
Q 044913 221 GSVPPA-L---KRLNEGFLYEN 238 (395)
Q Consensus 221 ~~~p~~-l---~~l~~l~~~~~ 238 (395)
. +|.. + .+++.+.+..+
T Consensus 212 ~-~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 212 L-LLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp T-HHHHHHHHTTTEEEEEEESC
T ss_pred c-chhhhhhhcccccEEECCCC
Confidence 4 4443 2 34555555444
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=3.6e-17 Score=153.21 Aligned_cols=151 Identities=27% Similarity=0.393 Sum_probs=121.2
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|+|++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence 4578889999988886554 88888999999999988753 368888899999999998885 343 88888999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+++|.+++..+ +..+++|++|++++|.+++.. . +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 99998885544 778888999999999888543 3 8888899999999998886543 7788889999999998886
Q ss_pred CCC
Q 044913 222 SVP 224 (395)
Q Consensus 222 ~~p 224 (395)
..+
T Consensus 210 ~~~ 212 (308)
T 1h6u_A 210 VSP 212 (308)
T ss_dssp CGG
T ss_pred ccc
Confidence 543
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=1.5e-17 Score=168.60 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=142.2
Q ss_pred CCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCC--CccccCCCCCCCEEEccCCCCCCCCCC-CCCCCCCc
Q 044913 61 EKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQ--IPREIANLTELSDLYLNVNNLSGDIPP-EIGYMGSL 137 (395)
Q Consensus 61 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L 137 (395)
...+++.|++++|.+.+..|..+.++++|+.|++++|.+++. +|..+..+++|++|++++|.+++.+|. .+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 456899999999999999999999999999999999999963 457799999999999999999975665 58899999
Q ss_pred cEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhh-hcCCCCCcEEEccC
Q 044913 138 QVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRK-LADAPLLEVLDIRN 216 (395)
Q Consensus 138 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~l~~ 216 (395)
++|++++|.+++..|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|++++ +|.. +..+++|+.|++++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCS
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecC
Confidence 9999999999877776554 79999999999999 677777799999999999999995 5554 89999999999999
Q ss_pred CCCCCCCC
Q 044913 217 NTLSGSVP 224 (395)
Q Consensus 217 N~l~~~~p 224 (395)
|++.+..+
T Consensus 507 N~~~c~c~ 514 (562)
T 3a79_B 507 NPWDCTCP 514 (562)
T ss_dssp CCBCCCHH
T ss_pred CCcCCCcc
Confidence 99998665
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=1.6e-17 Score=167.51 Aligned_cols=166 Identities=20% Similarity=0.281 Sum_probs=144.9
Q ss_pred CCCeeecCCCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCC
Q 044913 53 SFEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIG 132 (395)
Q Consensus 53 ~~~gv~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 132 (395)
.|.|+ |+ .++++++. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.
T Consensus 5 ~~~~~-c~---------~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 71 (549)
T 2z81_A 5 DASGV-CD---------GRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 71 (549)
T ss_dssp CTTSE-EE---------CTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCce-EE---------CCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc
Confidence 68887 74 45666664 444443 7999999999999988899999999999999999999988888999
Q ss_pred CCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCC-CCccccCCCCCCCEEEccCCCCCCcch-hhhcCCCCCc
Q 044913 133 YMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTG-AIPANLGDLGMLMRLDLSFNHLFGSIP-RKLADAPLLE 210 (395)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~ 210 (395)
.+++|++|++++|.+++..|..|+.+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|+
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 99999999999999998888889999999999999999986 356789999999999999999655665 5899999999
Q ss_pred EEEccCCCCCCCCChhhhccC
Q 044913 211 VLDIRNNTLSGSVPPALKRLN 231 (395)
Q Consensus 211 ~L~l~~N~l~~~~p~~l~~l~ 231 (395)
+|++++|.+++.+|..+..+.
T Consensus 152 ~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp EEEEEETTCCEECTTTTTTCS
T ss_pred eeeccCCcccccChhhhhccc
Confidence 999999999998888776544
No 83
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=4.7e-19 Score=184.56 Aligned_cols=204 Identities=25% Similarity=0.314 Sum_probs=125.8
Q ss_pred ChHHHHHHHHHHHhCCC-CCCCCCCCCCCCCCCCCCCCeeecCCCCCEEEEEe------------------cCCCCCC--
Q 044913 19 ADTELRALMDMKAALDP-EERYLSSWTINGDPCDGSFEGIACNEKGQVANISL------------------QGKGLNG-- 77 (395)
Q Consensus 19 ~~~~~~~L~~~~~~l~~-~~~~l~~W~~~~~~c~~~~~gv~c~~~~~l~~L~L------------------~~n~l~~-- 77 (395)
...+..+|+++..++.. ....-..|.....++. .|.+..+. .++++.|+| +.|.|.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s-~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~ 207 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG-TATNSAVS-TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDD 207 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccc-cCCCceec-CCccceEEeeCCCCCcchhhHhhcCccCcccccCcc
Confidence 34566788888876521 1111234533223332 56665553 233444444 4443332
Q ss_pred -------cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCC
Q 044913 78 -------KVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGS 150 (395)
Q Consensus 78 -------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 150 (395)
..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|.++ .
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 23566788899999999999988 67777778999999999999998 88888999999999999999998 7
Q ss_pred CccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCC-CcEEEccCCCCCCCCChhhh
Q 044913 151 IPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPL-LEVLDIRNNTLSGSVPPALK 228 (395)
Q Consensus 151 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~p~~l~ 228 (395)
+|..|..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++.+|..+.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 7888999999999999999987 67877999999999999999999888876644321 22356777777777776554
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=8.3e-17 Score=149.46 Aligned_cols=146 Identities=27% Similarity=0.350 Sum_probs=101.0
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
+++.|++++|.+... +.+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 567777777777654 236677777777777777775444 6777777777777777763 33 36777777777777
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 7777643 3566777777777777777744 456677777777777777775444 6677777777777777764
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=9.9e-17 Score=150.18 Aligned_cols=150 Identities=30% Similarity=0.417 Sum_probs=131.4
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|+|++|.+++ ++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 4799999999999864 3 68899999999999999996555 9999999999999999985 33 6899999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 99999964 3 38999999999999999996543 8899999999999999996544 88999999999999999865
Q ss_pred CC
Q 044913 223 VP 224 (395)
Q Consensus 223 ~p 224 (395)
.+
T Consensus 189 ~~ 190 (308)
T 1h6u_A 189 SP 190 (308)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=3.3e-18 Score=170.38 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=135.4
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCC-CCCCccEEEe
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIG-YMGSLQVLQL 142 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L 142 (395)
+++.|++++|.+.+..+. .+++|+.|+|++|.+++..|..+..+++|++|+|++|.+++..|..+. .+++|++|+|
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 455556666666554443 468899999999999998899999999999999999999988888876 7999999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC-C
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS-G 221 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~ 221 (395)
++|.+++. + .+..+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +
T Consensus 177 s~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCCccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 99999965 3 23468999999999999996544 58899999999999999994 7888999999999999999998 5
Q ss_pred CCChhhhccCc
Q 044913 222 SVPPALKRLNE 232 (395)
Q Consensus 222 ~~p~~l~~l~~ 232 (395)
.+|..+..+..
T Consensus 253 ~~~~~~~~l~~ 263 (487)
T 3oja_A 253 TLRDFFSKNQR 263 (487)
T ss_dssp HHHHHHTTCHH
T ss_pred chHHHHHhCCC
Confidence 66666655543
No 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=3.2e-17 Score=139.34 Aligned_cols=134 Identities=22% Similarity=0.161 Sum_probs=110.9
Q ss_pred CCCCCcEEEccCCCCC-CCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCE
Q 044913 85 GLKHLTGLYLHYNSLY-GQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSV 163 (395)
Q Consensus 85 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 163 (395)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888887 67777788888888888888888854 67888889999999999988777877777899999
Q ss_pred EeccCccCCCCC-ccccCCCCCCCEEEccCCCCCCcch---hhhcCCCCCcEEEccCCCCC
Q 044913 164 LALQSNQLTGAI-PANLGDLGMLMRLDLSFNHLFGSIP---RKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 164 L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~l~~N~l~ 220 (395)
|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999988542 2678889999999999999986554 47888999999999999886
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.8e-17 Score=167.21 Aligned_cols=157 Identities=27% Similarity=0.333 Sum_probs=99.3
Q ss_pred CCCCCCCCCCCCC---CCCee-ecCCCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCE
Q 044913 40 LSSWTINGDPCDG---SFEGI-ACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSD 115 (395)
Q Consensus 40 l~~W~~~~~~c~~---~~~gv-~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 115 (395)
+.+|..+.++|.. .|.|+ .|. .++++.|+|++|.+.+ +|..+ +++|+.|+|++|.|+ .+| ..+++|++
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~ 104 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEY 104 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred HHHHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCE
Confidence 3456556778854 58888 674 3478888998888887 55544 367888888888877 455 44677777
Q ss_pred EEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCC
Q 044913 116 LYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHL 195 (395)
Q Consensus 116 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 195 (395)
|+|++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|.+
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 7777777774 555 544 67777777777664 444 45566666666666664 333 345555566666555
Q ss_pred CCcchhhhcCCCCCcEEEccCCCCC
Q 044913 196 FGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 196 ~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
++ +|. +. ++|+.|++++|.++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CC-cch-hh--CCCCEEECcCCCCC
Confidence 54 333 33 55555555555555
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=1.1e-16 Score=152.02 Aligned_cols=154 Identities=25% Similarity=0.347 Sum_probs=83.1
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++
T Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l 228 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEc
Confidence 466677777776665433 6666677777777766664332 5555555555555555553322 455555555555
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 229 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 229 GNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred cCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence 5555553322 45555555555555555532 2345555555555555555532 2344555555555555555554
Q ss_pred CChhhh
Q 044913 223 VPPALK 228 (395)
Q Consensus 223 ~p~~l~ 228 (395)
.|..+.
T Consensus 303 ~~~~l~ 308 (347)
T 4fmz_A 303 DMEVIG 308 (347)
T ss_dssp GHHHHH
T ss_pred ChhHhh
Confidence 444443
No 90
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=9.8e-17 Score=139.66 Aligned_cols=132 Identities=27% Similarity=0.321 Sum_probs=117.9
Q ss_pred EEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCcc-ccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeec
Q 044913 66 ANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPR-EIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCY 144 (395)
Q Consensus 66 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 144 (395)
+.+++++|++. .+|..+. .+|+.|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46788888885 4555443 3899999999999977765 589999999999999999988899999999999999999
Q ss_pred CCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcch
Q 044913 145 NQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIP 200 (395)
Q Consensus 145 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 200 (395)
|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998888889999999999999999999889999999999999999999987544
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=6.6e-17 Score=154.10 Aligned_cols=187 Identities=20% Similarity=0.134 Sum_probs=134.8
Q ss_pred CCCCCCCeeecCCC----------CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCE-E
Q 044913 49 PCDGSFEGIACNEK----------GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIP-REIANLTELSD-L 116 (395)
Q Consensus 49 ~c~~~~~gv~c~~~----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L 116 (395)
.|.|++..|.|... .++++|+|++|.|+...+.+|.++++|++|+|++|.+.+.+| ..|.++++|++ +
T Consensus 6 ~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 6 ICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred ccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 36667888888421 368999999999998878899999999999999999876555 57889998876 5
Q ss_pred EccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCC-------------------------C-CCCCEEeccCcc
Q 044913 117 YLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGS-------------------------L-RKLSVLALQSNQ 170 (395)
Q Consensus 117 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-------------------------l-~~L~~L~L~~n~ 170 (395)
.+.+|+++...|..|..+++|++|++++|.+....+..+.. + ..++.|++++|.
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 66779999777888999999999999999887543332222 2 245667777777
Q ss_pred CCCCCccccCCCCCCCEEEccC-CCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCccccc
Q 044913 171 LTGAIPANLGDLGMLMRLDLSF-NHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEGFLY 236 (395)
Q Consensus 171 l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l~~~ 236 (395)
++ .+|.......+|+.|++.+ |.++...+..|..+++|+.||+++|+++...+..+.+++.+...
T Consensus 166 i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 166 IQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp CC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred cc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 76 3344344456677777764 44553333466778888888888888875444456666655443
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=6.3e-17 Score=150.27 Aligned_cols=148 Identities=30% Similarity=0.392 Sum_probs=131.9
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|+|++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+++. +.+..+++|+.|+
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 140 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE
Confidence 4689999999999997655 9999999999999999985 33 489999999999999999853 4688999999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 999999965 678899999999999999997654 8999999999999999985 44 48999999999999999875
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=3.3e-17 Score=165.31 Aligned_cols=148 Identities=22% Similarity=0.277 Sum_probs=108.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.|++ +|. +.+ +|+.|+|++|.+++ +|. .+++|++|+|++|.+++ +|. .+++|++|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 456666666666665 444 443 67777777777765 444 56777777777777774 554 4678888888
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCC-------CEEEccCCCCCCcchhhhcCCCCCcEEEcc
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGML-------MRLDLSFNHLFGSIPRKLADAPLLEVLDIR 215 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 215 (395)
++|.+++ +|. +. ++|+.|+|++|.|+ .+|. +.. +| +.|+|++|.|+ .+|..+..+++|+.|+++
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 8888875 555 55 78888888888888 5665 544 66 99999999998 577777779999999999
Q ss_pred CCCCCCCCChhhhccC
Q 044913 216 NNTLSGSVPPALKRLN 231 (395)
Q Consensus 216 ~N~l~~~~p~~l~~l~ 231 (395)
+|++++.+|..+..+.
T Consensus 239 ~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSSCCHHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHhh
Confidence 9999999888876653
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=9.4e-18 Score=157.76 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=133.5
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCC-CCCCCccEEEe
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEI-GYMGSLQVLQL 142 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L 142 (395)
+++.|++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|++|+|++|.+++..+..+ ..+++|++|++
T Consensus 100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 455555555555544333 46789999999999998888899999999999999999997767766 47899999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC-C
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS-G 221 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~ 221 (395)
++|.+++. +. ...+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +
T Consensus 177 ~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 177 QYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 99999855 32 3458999999999999995 4555899999999999999999 67888999999999999999999 6
Q ss_pred CCChhhhccCc
Q 044913 222 SVPPALKRLNE 232 (395)
Q Consensus 222 ~~p~~l~~l~~ 232 (395)
.+|..+..+..
T Consensus 253 ~~~~~~~~~~~ 263 (317)
T 3o53_A 253 TLRDFFSKNQR 263 (317)
T ss_dssp HHHHHHHTCHH
T ss_pred CHHHHHhcccc
Confidence 66666665543
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.1e-16 Score=146.40 Aligned_cols=147 Identities=24% Similarity=0.292 Sum_probs=127.7
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+++ +|.. .. ++|++|++
T Consensus 41 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEEC
T ss_pred CcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEc
Confidence 4789999999999854 3 68899999999999999996655 9999999999999999995 4443 33 99999999
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++. ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 114 ~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99999964 3589999999999999999954 4 688999999999999999965 6788999999999999999865
No 96
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=3.9e-16 Score=133.82 Aligned_cols=114 Identities=23% Similarity=0.182 Sum_probs=61.6
Q ss_pred CCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEec
Q 044913 87 KHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLAL 166 (395)
Q Consensus 87 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 166 (395)
++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~------------------ 89 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ------------------ 89 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc------------------
Confidence 45666666666666544445555555555555555555333334445555555555555544
Q ss_pred cCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCC
Q 044913 167 QSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVP 224 (395)
Q Consensus 167 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 224 (395)
+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 90 ------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 90 ------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 4333444555555555555555554444444556666666666666665443
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.7e-17 Score=140.48 Aligned_cols=150 Identities=20% Similarity=0.265 Sum_probs=126.9
Q ss_pred ccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCC
Q 044913 83 IAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLS 162 (395)
Q Consensus 83 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 162 (395)
...+++|+.|++++|.+. .+| .+..+++|++|++++|.++ .++.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 367889999999999998 555 6899999999999999776 334789999999999999999988889999999999
Q ss_pred EEeccCccCCCCCccccCCCCCCCEEEccCCC-CCCcchhhhcCCCCCcEEEccCCCCCCCCC-hhhhccCccccccC
Q 044913 163 VLALQSNQLTGAIPANLGDLGMLMRLDLSFNH-LFGSIPRKLADAPLLEVLDIRNNTLSGSVP-PALKRLNEGFLYEN 238 (395)
Q Consensus 163 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p-~~l~~l~~l~~~~~ 238 (395)
+|++++|.+++..|..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++++..+ ..+.+++.+.+..|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCc
Confidence 99999999998788899999999999999998 65 555 68899999999999999986431 22344555555444
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=4.1e-16 Score=158.77 Aligned_cols=149 Identities=31% Similarity=0.407 Sum_probs=117.7
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 137 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEE
Confidence 4578888888888887655 7888888888888888875 23 67888888888888888874 3 3577888888888
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 888888855 567788888888888888886655 78888888888888888753 357788888888888888875
Q ss_pred C
Q 044913 222 S 222 (395)
Q Consensus 222 ~ 222 (395)
.
T Consensus 212 ~ 212 (605)
T 1m9s_A 212 K 212 (605)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=5.9e-17 Score=134.89 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=100.7
Q ss_pred CCCCcEEEccCCCCC-CCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEE
Q 044913 86 LKHLTGLYLHYNSLY-GQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVL 164 (395)
Q Consensus 86 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 164 (395)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467788888888887 67777778888888888888888754 667888888888888888887677777778888888
Q ss_pred eccCccCCCC-CccccCCCCCCCEEEccCCCCCCcch---hhhcCCCCCcEEEccC
Q 044913 165 ALQSNQLTGA-IPANLGDLGMLMRLDLSFNHLFGSIP---RKLADAPLLEVLDIRN 216 (395)
Q Consensus 165 ~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~l~~ 216 (395)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888753 33677888888888888888876544 4677888888888753
No 100
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=5.6e-16 Score=132.87 Aligned_cols=139 Identities=22% Similarity=0.201 Sum_probs=98.0
Q ss_pred CEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCC
Q 044913 114 SDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFN 193 (395)
Q Consensus 114 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 193 (395)
+.+++++|.++ .+|..+ .++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34444444444 333322 246666666666666555556677777777888888777666667889999999999999
Q ss_pred CCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc--ccccCCccCcCCC-CCCCccCCC
Q 044913 194 HLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG--FLYENNLELCGVG-FSALKTCSA 255 (395)
Q Consensus 194 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l--~~~~~n~~~c~~~-~~~~~~~~~ 255 (395)
.+++..+..+..+++|+.|++++|.+++..+..+..+..+ ....+|+..|+|. +.++..|..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~ 151 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 151 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHh
Confidence 9998777788999999999999999997666555555443 2345777888886 555555543
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=6.1e-17 Score=137.61 Aligned_cols=132 Identities=23% Similarity=0.160 Sum_probs=119.3
Q ss_pred CCEEEEEecCCCCC-CcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 63 GQVANISLQGKGLN-GKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
.+++.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 47899999999998 78888899999999999999999966 7889999999999999999977777777899999999
Q ss_pred eecCCCCCCC-ccccCCCCCCCEEeccCccCCCCCc---cccCCCCCCCEEEccCCCCC
Q 044913 142 LCYNQLTGSI-PTQLGSLRKLSVLALQSNQLTGAIP---ANLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 142 Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 196 (395)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999643 3788999999999999999996655 47999999999999999987
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=2.5e-16 Score=149.48 Aligned_cols=166 Identities=22% Similarity=0.286 Sum_probs=141.9
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 176 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence 4589999999999986544 8899999999999999986555 8899999999999999995443 89999999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+++|.++.. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 999999864 5688999999999999999964 458899999999999999998889999999999999999999998
Q ss_pred CCC-hhhhccCcccccc
Q 044913 222 SVP-PALKRLNEGFLYE 237 (395)
Q Consensus 222 ~~p-~~l~~l~~l~~~~ 237 (395)
..| ..+.+++.+.+..
T Consensus 326 ~~~~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 326 IRPLASLSKMDSADFAN 342 (347)
T ss_dssp CGGGGGCTTCSEESSSC
T ss_pred ccChhhhhccceeehhh
Confidence 766 2234455544433
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=3e-16 Score=159.81 Aligned_cols=156 Identities=27% Similarity=0.337 Sum_probs=135.7
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|++++|.+... +.+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 34788999999998764 358999999999999999997665 8999999999999999984 44 799999999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999963 4588999999999999999965 678999999999999999997766 8999999999999999986
Q ss_pred CCChhhhccC
Q 044913 222 SVPPALKRLN 231 (395)
Q Consensus 222 ~~p~~l~~l~ 231 (395)
. | .+..+.
T Consensus 190 l-~-~l~~l~ 197 (605)
T 1m9s_A 190 L-R-ALAGLK 197 (605)
T ss_dssp C-G-GGTTCT
T ss_pred C-h-HHccCC
Confidence 4 3 444443
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=7.8e-16 Score=152.34 Aligned_cols=148 Identities=29% Similarity=0.362 Sum_probs=96.7
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..| +..+++|+.|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 467777777777766544 56677777777777776643 346666777777777777764433 666677777777
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|++++.
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 7777664433 5666777777777777665433 5666667777777776665544 55666666666666666653
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=8.7e-16 Score=133.76 Aligned_cols=128 Identities=27% Similarity=0.403 Sum_probs=114.1
Q ss_pred EEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecC
Q 044913 66 ANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145 (395)
Q Consensus 66 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 145 (395)
+.+++++|.+.. +|..+ .++|+.|+|++|.++ .+|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 367888888874 44444 368999999999998 67789999999999999999999887888999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCC
Q 044913 146 QLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFG 197 (395)
Q Consensus 146 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 197 (395)
.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998888899999999999999999997777789999999999999999863
No 106
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=4.3e-16 Score=154.22 Aligned_cols=156 Identities=29% Similarity=0.403 Sum_probs=135.0
Q ss_pred CCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 62 KGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
..+++.|++++|.+.+. +.+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 45799999999999864 468899999999999999987655 8899999999999999995544 88999999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 142 LCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 142 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 99999996554 7889999999999999997665 78899999999999999975 468899999999999999998
Q ss_pred CCChhhhccC
Q 044913 222 SVPPALKRLN 231 (395)
Q Consensus 222 ~~p~~l~~l~ 231 (395)
..| +..+.
T Consensus 368 ~~~--~~~l~ 375 (466)
T 1o6v_A 368 LTP--LANLT 375 (466)
T ss_dssp CGG--GTTCT
T ss_pred cch--hhcCC
Confidence 776 44443
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=4.7e-15 Score=146.39 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=103.0
Q ss_pred CCeeecCCCCCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCC
Q 044913 54 FEGIACNEKGQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGY 133 (395)
Q Consensus 54 ~~gv~c~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 133 (395)
..++.-....+++.|++++|.+.+. + +.++++|++|++++|.+++. + +..+++|++|++++|.+++. + ++.
T Consensus 76 l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~ 146 (457)
T 3bz5_A 76 ITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSH 146 (457)
T ss_dssp CSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTT
T ss_pred CCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--ccc
Confidence 3333333446788888888888775 2 77888888888888888763 3 77778888888888877753 2 444
Q ss_pred CC----------------------CccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEcc
Q 044913 134 MG----------------------SLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLS 191 (395)
Q Consensus 134 l~----------------------~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (395)
++ +|++|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|+.|+++
T Consensus 147 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCS 220 (457)
T ss_dssp CTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECC
T ss_pred CCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECc
Confidence 44 45555555555543 22 45555566666666665543 25566667777777
Q ss_pred CCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCcc
Q 044913 192 FNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEG 233 (395)
Q Consensus 192 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l 233 (395)
+|++++ +| +..+++|+.|++++|++++..+..+.+++.+
T Consensus 221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L 259 (457)
T 3bz5_A 221 SNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL 259 (457)
T ss_dssp SSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred CCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence 777765 34 5666777777777777776555555555433
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=3.9e-15 Score=146.90 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=97.3
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|+|++|.+.+. + +..+++|++|++++|.+++. + +..+++|++|++++|.+++ +| +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 3566666666666653 2 55666666666666666643 2 5666666666666666664 32 566666666666
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++. .++.+++|++|++++|...+.+ .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+++.
T Consensus 135 ~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 135 ARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 66666643 2556666666666666444343 36667777777777777775 33 66777788888888877765
Q ss_pred CChhhhccCccccccC
Q 044913 223 VPPALKRLNEGFLYEN 238 (395)
Q Consensus 223 ~p~~l~~l~~l~~~~~ 238 (395)
.-..+.+++.+.+..+
T Consensus 207 ~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp CCTTCTTCSEEECCSS
T ss_pred ccccCCCCCEEECcCC
Confidence 3233344444444433
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=9.9e-17 Score=133.51 Aligned_cols=128 Identities=23% Similarity=0.173 Sum_probs=115.1
Q ss_pred CCEEEEEecCCCCC-CcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 63 GQVANISLQGKGLN-GKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
.+++.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46899999999998 78888999999999999999999976 7889999999999999999977888777899999999
Q ss_pred eecCCCCCC-CccccCCCCCCCEEeccCccCCCCCc---cccCCCCCCCEEEccC
Q 044913 142 LCYNQLTGS-IPTQLGSLRKLSVLALQSNQLTGAIP---ANLGDLGMLMRLDLSF 192 (395)
Q Consensus 142 Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~ 192 (395)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999964 34789999999999999999997665 5788999999999864
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.8e-17 Score=156.58 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=121.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCC-CccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQ-IPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
.+++.|++++|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4677788888877766555 44678888888888877755 677777888888888888887766666777788888888
Q ss_pred eecC-CCCCC-CccccCCCCCCCEEeccCc-cCCCC-CccccCCCC-CCCEEEccCC--CCC-CcchhhhcCCCCCcEEE
Q 044913 142 LCYN-QLTGS-IPTQLGSLRKLSVLALQSN-QLTGA-IPANLGDLG-MLMRLDLSFN--HLF-GSIPRKLADAPLLEVLD 213 (395)
Q Consensus 142 Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~ 213 (395)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 8888 56642 5555677788888888888 77653 456677777 8888888888 455 35566667778888888
Q ss_pred ccCCC-CCCCCChhhhccC
Q 044913 214 IRNNT-LSGSVPPALKRLN 231 (395)
Q Consensus 214 l~~N~-l~~~~p~~l~~l~ 231 (395)
+++|. +++..+..+..+.
T Consensus 229 l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCT
T ss_pred CCCCCcCCHHHHHHHhCCC
Confidence 88887 6655665555443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=1.5e-15 Score=138.88 Aligned_cols=153 Identities=24% Similarity=0.254 Sum_probs=126.9
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
++..++++++.+.... .+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3456677788877554 57889999999999999984 45 68899999999999999995544 9999999999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSV 223 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 223 (395)
+|.+++. |.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 94 ~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNL-NGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCC-TTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCc-Ccc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 9999963 433 23 899999999999995 34 589999999999999999964 4 688999999999999999976
Q ss_pred ChhhhccC
Q 044913 224 PPALKRLN 231 (395)
Q Consensus 224 p~~l~~l~ 231 (395)
..+..+.
T Consensus 166 -~~l~~l~ 172 (263)
T 1xeu_A 166 -GGLTRLK 172 (263)
T ss_dssp -TTSTTCC
T ss_pred -HHhccCC
Confidence 4444443
No 112
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=1e-15 Score=130.47 Aligned_cols=108 Identities=26% Similarity=0.237 Sum_probs=72.4
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccC
Q 044913 113 LSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSF 192 (395)
Q Consensus 113 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 192 (395)
.+.|++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345555555555 4554442 5666666666666666666666677777777777777765556667777777777777
Q ss_pred CCCCCcchhhhcCCCCCcEEEccCCCCCCCC
Q 044913 193 NHLFGSIPRKLADAPLLEVLDIRNNTLSGSV 223 (395)
Q Consensus 193 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 223 (395)
|++++..+..|..+++|+.|++++|++.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 7777665666777788888888888777543
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=1.9e-17 Score=159.88 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=104.7
Q ss_pred CCEEEEEecCCCCCC----cCCccccCCCCCcEEEccCCCCCCCCcccc----CCC---------CCCCEEEccCCCCC-
Q 044913 63 GQVANISLQGKGLNG----KVSPAIAGLKHLTGLYLHYNSLYGQIPREI----ANL---------TELSDLYLNVNNLS- 124 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~~l---------~~L~~L~L~~n~l~- 124 (395)
.+++.|+|++|.+.. .++..+..+++|++|+|++|.+....+..+ ..+ ++|++|+|++|.++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 466777777777765 355566667777777777777653333222 223 67777777777765
Q ss_pred CCCC---CCCCCCCCccEEEeecCCCCC-----CCccccCCCCCCCEEeccCccCC----CCCccccCCCCCCCEEEccC
Q 044913 125 GDIP---PEIGYMGSLQVLQLCYNQLTG-----SIPTQLGSLRKLSVLALQSNQLT----GAIPANLGDLGMLMRLDLSF 192 (395)
Q Consensus 125 ~~~p---~~~~~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~ 192 (395)
..+| ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..+|..+..+++|+.|+|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 2223 244556677777777777662 23335666777777777777774 35666677777777777777
Q ss_pred CCCCCc----chhhhcC--CCCCcEEEccCCCCCC----CCChhh
Q 044913 193 NHLFGS----IPRKLAD--APLLEVLDIRNNTLSG----SVPPAL 227 (395)
Q Consensus 193 N~l~~~----~p~~l~~--l~~L~~L~l~~N~l~~----~~p~~l 227 (395)
|.+++. ++..+.. +++|+.|++++|.+++ .+|..+
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 777654 4555533 6777777777777776 355554
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=3.4e-17 Score=154.77 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=135.8
Q ss_pred CCCEEEEEecCCCCCCc-CCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCC-CCCCC-CCCCCCCCCCcc
Q 044913 62 KGQVANISLQGKGLNGK-VSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVN-NLSGD-IPPEIGYMGSLQ 138 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~ 138 (395)
..+++.|+|++|.+.+. ++..+..+++|++|+|++|.+++..+..+..+++|++|+|++| .+++. ++..+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 35899999999998866 7888999999999999999999888889999999999999999 67642 555677899999
Q ss_pred EEEeecC-CCCCC-CccccCCCC-CCCEEeccCc--cCC-CCCccccCCCCCCCEEEccCCC-CCCcchhhhcCCCCCcE
Q 044913 139 VLQLCYN-QLTGS-IPTQLGSLR-KLSVLALQSN--QLT-GAIPANLGDLGMLMRLDLSFNH-LFGSIPRKLADAPLLEV 211 (395)
Q Consensus 139 ~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~ 211 (395)
+|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 9999999 88854 567778889 9999999999 455 3567777889999999999999 77777888899999999
Q ss_pred EEccCCC
Q 044913 212 LDIRNNT 218 (395)
Q Consensus 212 L~l~~N~ 218 (395)
|++++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 9999996
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=2.1e-15 Score=129.23 Aligned_cols=134 Identities=19% Similarity=0.137 Sum_probs=98.0
Q ss_pred cccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCC
Q 044913 82 AIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKL 161 (395)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 161 (395)
.+.++.+|+.|++++|.++. ++......++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45567777788888887773 344333334788888888888754 567788888888888888875544555778888
Q ss_pred CEEeccCccCCCCCcc--ccCCCCCCCEEEccCCCCCCcchh----hhcCCCCCcEEEccCCCCC
Q 044913 162 SVLALQSNQLTGAIPA--NLGDLGMLMRLDLSFNHLFGSIPR----KLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 162 ~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~l~~N~l~ 220 (395)
++|++++|.++ .+|. .+..+++|+.|++++|.++ .+|. .+..+++|+.||+++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888886 4554 6778888888888888887 4454 3778888888888888764
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4.3e-17 Score=164.92 Aligned_cols=155 Identities=22% Similarity=0.234 Sum_probs=126.8
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCC-------------CCCCCccccCCC--------------------
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNS-------------LYGQIPREIANL-------------------- 110 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l-------------------- 110 (395)
+++.|+|++|.+. .+|..++.+++|+.|++++|. +.+..|..+..+
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 4456777777775 678888888888888886664 333333322111
Q ss_pred ------------CCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccc
Q 044913 111 ------------TELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPAN 178 (395)
Q Consensus 111 ------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 178 (395)
..|+.|+|++|.+++ +|. |..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~ 503 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-G 503 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-G
T ss_pred hhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-c
Confidence 258889999999994 676 999999999999999999 788999999999999999999996 66 7
Q ss_pred cCCCCCCCEEEccCCCCCCcc-hhhhcCCCCCcEEEccCCCCCCCCC
Q 044913 179 LGDLGMLMRLDLSFNHLFGSI-PRKLADAPLLEVLDIRNNTLSGSVP 224 (395)
Q Consensus 179 ~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~p 224 (395)
++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 999999999999999999876 8999999999999999999987655
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=3e-14 Score=140.42 Aligned_cols=139 Identities=23% Similarity=0.305 Sum_probs=59.4
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
++++|++++|.+.+ +| .|.++++|++|++++|.+++ +|..+ ++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 34444444444443 22 24444444444444444442 22211 244444444444442 33 34444444444444
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
+|.+++ +|.. .++|++|++++|.++ .+|. ++.+++|+.|++++|++++ +|. .+++|+.|++++|+++
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT 270 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccc
Confidence 444442 2221 124444444444444 3332 4455555555555555543 222 1234444444444444
No 118
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=3.8e-15 Score=127.45 Aligned_cols=104 Identities=27% Similarity=0.234 Sum_probs=61.5
Q ss_pred EEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCC
Q 044913 115 DLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNH 194 (395)
Q Consensus 115 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 194 (395)
.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|.|++..+..|..+++|+.|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4444444444 4444332 455555555555555555555556666666666666665444455666667777777776
Q ss_pred CCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 195 LFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 195 l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+++..+..+..+++|+.|++++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 665544556677777777777777763
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=4.9e-14 Score=138.92 Aligned_cols=157 Identities=24% Similarity=0.261 Sum_probs=105.6
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.|++++|.+.+... ..++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..+ .+|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEEC
T ss_pred CCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEEC
Confidence 345555555555543211 01567777777777775 55 47777777777777777773 55433 47777778
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
++|.+++ +| .++.+++|++|++++|.+++ +|... ++|+.|++++|.++ .+|. +..+++|+.|++++|++++
T Consensus 181 ~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~- 251 (454)
T 1jl5_A 181 GNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT- 251 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-
T ss_pred cCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-
Confidence 7777775 45 57778888888888888774 44322 47888888888887 5663 7888889999999998885
Q ss_pred CChhhhccCccccccC
Q 044913 223 VPPALKRLNEGFLYEN 238 (395)
Q Consensus 223 ~p~~l~~l~~l~~~~~ 238 (395)
+|..+.+++.+.+..+
T Consensus 252 l~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 252 LPDLPPSLEALNVRDN 267 (454)
T ss_dssp CCSCCTTCCEEECCSS
T ss_pred ccccccccCEEECCCC
Confidence 5555556665555443
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=5e-15 Score=151.07 Aligned_cols=94 Identities=29% Similarity=0.353 Sum_probs=48.2
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
+++.|++++|.++ .+|..+. ++|+.|+|++|.++ .+|. .+++|++|+|++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 3556666666665 3344332 55666666666655 2333 3455666666666655 3443 44555555555
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLT 172 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 172 (395)
+|.+++ +|. .+++|+.|++++|.++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence 555553 222 2344444444444444
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=9.1e-17 Score=155.09 Aligned_cols=160 Identities=21% Similarity=0.213 Sum_probs=106.8
Q ss_pred CCEEEEEecCCC---CCCcCCccc-------cCCCCCcEEEccCCCCCC----CCccccCCCCCCCEEEccCCCCCCCCC
Q 044913 63 GQVANISLQGKG---LNGKVSPAI-------AGLKHLTGLYLHYNSLYG----QIPREIANLTELSDLYLNVNNLSGDIP 128 (395)
Q Consensus 63 ~~l~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p 128 (395)
.+++.|+|++|. +.+.+|..+ ..+++|++|+|++|.+.+ .++..+..+++|++|+|++|.++...+
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 467777777753 334444443 567777777777777776 356667777777777777777753322
Q ss_pred CCC----CCC---------CCccEEEeecCCCC-CCCc---cccCCCCCCCEEeccCccCCC-----CCccccCCCCCCC
Q 044913 129 PEI----GYM---------GSLQVLQLCYNQLT-GSIP---TQLGSLRKLSVLALQSNQLTG-----AIPANLGDLGMLM 186 (395)
Q Consensus 129 ~~~----~~l---------~~L~~L~Ls~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~ 186 (395)
..+ ..+ ++|++|++++|.++ ...+ ..+..+++|++|++++|.++. ..+..+..+++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 222 222 67777888777776 3333 345567778888888887762 2333667777888
Q ss_pred EEEccCCCCC----CcchhhhcCCCCCcEEEccCCCCCCC
Q 044913 187 RLDLSFNHLF----GSIPRKLADAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 187 ~L~L~~N~l~----~~~p~~l~~l~~L~~L~l~~N~l~~~ 222 (395)
.|+|++|.++ +.+|..+..+++|+.|++++|.+++.
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 8888888875 45677777778888888888887754
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2.2e-15 Score=156.89 Aligned_cols=138 Identities=25% Similarity=0.226 Sum_probs=110.1
Q ss_pred CCcEEEccCCCCCC---------CCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCC
Q 044913 88 HLTGLYLHYNSLYG---------QIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSL 158 (395)
Q Consensus 88 ~L~~L~Ls~n~l~~---------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 158 (395)
.|+.++|+.|.|.+ ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 34555555555443 45778999999999999999999 78888889999999999999999 889999999
Q ss_pred CCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhc
Q 044913 159 RKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKR 229 (395)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~ 229 (395)
++|++|+|++|.|+ .+|..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|.|++.+|..+..
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 99999999999999 78999999999999999999998 77888999999999999999999999987743
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=1.3e-16 Score=152.66 Aligned_cols=108 Identities=24% Similarity=0.292 Sum_probs=48.3
Q ss_pred EEEEEecCCCCCCcCC----ccccCCC-CCcEEEccCCCCCCCCccccCCC-----CCCCEEEccCCCCCCCCCCC----
Q 044913 65 VANISLQGKGLNGKVS----PAIAGLK-HLTGLYLHYNSLYGQIPREIANL-----TELSDLYLNVNNLSGDIPPE---- 130 (395)
Q Consensus 65 l~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~---- 130 (395)
++.|+|++|.+.+..+ ..|..++ +|++|+|++|.+.+..+..+..+ ++|++|+|++|.+++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4555555555544443 4444444 45555555555544444433332 45555555555554333322
Q ss_pred CCCC-CCccEEEeecCCCCCCCcccc----CC-CCCCCEEeccCccCC
Q 044913 131 IGYM-GSLQVLQLCYNQLTGSIPTQL----GS-LRKLSVLALQSNQLT 172 (395)
Q Consensus 131 ~~~l-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~L~~n~l~ 172 (395)
+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.++
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 1222 445555555555443333222 22 134555555555444
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=3.4e-14 Score=144.95 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=21.2
Q ss_pred CCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhc
Q 044913 183 GMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKR 229 (395)
Q Consensus 183 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~ 229 (395)
++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 34444444444444 33444444444444444444444444444433
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=7e-16 Score=147.64 Aligned_cols=161 Identities=23% Similarity=0.234 Sum_probs=131.9
Q ss_pred EEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCc----cccCCCC-CCCEEEccCCCCCCCCCCCCCCC-----CC
Q 044913 67 NISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIP----REIANLT-ELSDLYLNVNNLSGDIPPEIGYM-----GS 136 (395)
Q Consensus 67 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~ 136 (395)
..+++.|.+.+.+|..+...++|++|+|++|.+.+..+ ..+..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999999988888888889999999999997777 7888999 99999999999997767666664 89
Q ss_pred ccEEEeecCCCCCCCcccc----CCC-CCCCEEeccCccCCCCCcccc----CC-CCCCCEEEccCCCCCCc----chhh
Q 044913 137 LQVLQLCYNQLTGSIPTQL----GSL-RKLSVLALQSNQLTGAIPANL----GD-LGMLMRLDLSFNHLFGS----IPRK 202 (395)
Q Consensus 137 L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~L~~N~l~~~----~p~~ 202 (395)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999997776644 444 899999999999987665443 34 36999999999999853 3445
Q ss_pred hcCCC-CCcEEEccCCCCCCCCChhh
Q 044913 203 LADAP-LLEVLDIRNNTLSGSVPPAL 227 (395)
Q Consensus 203 l~~l~-~L~~L~l~~N~l~~~~p~~l 227 (395)
+..++ +|++|++++|++++..+..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l 187 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAEL 187 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHH
Confidence 56665 89999999999987776543
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.3e-17 Score=145.87 Aligned_cols=149 Identities=25% Similarity=0.310 Sum_probs=97.6
Q ss_pred EEEEEecCCCCCCcCCc------cccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCcc
Q 044913 65 VANISLQGKGLNGKVSP------AIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQ 138 (395)
Q Consensus 65 l~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 138 (395)
++.++++.+.+.+..|. .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 33444444444444443 67777788888888777775 55 6777777777777777777 5666566667777
Q ss_pred EEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCc-cccCCCCCCCEEEccCCCCCCcchh----------hhcCCC
Q 044913 139 VLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIP-ANLGDLGMLMRLDLSFNHLFGSIPR----------KLADAP 207 (395)
Q Consensus 139 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----------~l~~l~ 207 (395)
+|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..++
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 77777777774 33 46667777777777777764222 3566777777777777777654433 256667
Q ss_pred CCcEEEccCCCCC
Q 044913 208 LLEVLDIRNNTLS 220 (395)
Q Consensus 208 ~L~~L~l~~N~l~ 220 (395)
+|+.|| +|+++
T Consensus 175 ~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 175 NLKKLD--GMPVD 185 (198)
T ss_dssp SCSEEC--CGGGT
T ss_pred CcEEEC--CcccC
Confidence 777665 55544
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=1.4e-13 Score=117.18 Aligned_cols=87 Identities=28% Similarity=0.215 Sum_probs=50.7
Q ss_pred CCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEc
Q 044913 111 TELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDL 190 (395)
Q Consensus 111 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 190 (395)
++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44555555555555444555555555555555555555444445555666666666666666555555666667777777
Q ss_pred cCCCCCC
Q 044913 191 SFNHLFG 197 (395)
Q Consensus 191 ~~N~l~~ 197 (395)
++|.++.
T Consensus 110 ~~N~~~c 116 (170)
T 3g39_A 110 LNNPWDC 116 (170)
T ss_dssp CSSCBCT
T ss_pred CCCCCCC
Confidence 7776654
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.8e-14 Score=123.28 Aligned_cols=128 Identities=18% Similarity=0.141 Sum_probs=109.4
Q ss_pred CCEEEEEecCCCCCCcCCccccCCC-CCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEE
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLK-HLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQ 141 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 141 (395)
.+++.|++++|.+... +. +..+. +|+.|++++|.+++. ..+..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3789999999999854 44 55554 999999999999965 6889999999999999999954444458999999999
Q ss_pred eecCCCCCCCcc--ccCCCCCCCEEeccCccCCCCCcc----ccCCCCCCCEEEccCCCCC
Q 044913 142 LCYNQLTGSIPT--QLGSLRKLSVLALQSNQLTGAIPA----NLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 142 Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~ 196 (395)
+++|.+. .+|. .+..+++|++|++++|.++ .+|. .+..+++|+.|+++.|.+.
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999997 5565 7889999999999999998 4565 4889999999999999875
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=5.1e-14 Score=142.40 Aligned_cols=122 Identities=24% Similarity=0.236 Sum_probs=105.4
Q ss_pred CCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEecc
Q 044913 88 HLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQ 167 (395)
Q Consensus 88 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 167 (395)
.|+.|+|++|.+++ +|. +..+++|+.|+|++|.++ .+|..|+.+++|+.|+|++|.+++ +| .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57889999999986 566 899999999999999999 888899999999999999999996 66 88999999999999
Q ss_pred CccCCCCC-ccccCCCCCCCEEEccCCCCCCcchh---hhcCCCCCcEEEc
Q 044913 168 SNQLTGAI-PANLGDLGMLMRLDLSFNHLFGSIPR---KLADAPLLEVLDI 214 (395)
Q Consensus 168 ~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~l 214 (395)
+|.+++.. |..+..+++|+.|+|++|.+++..|. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999776 88999999999999999999865442 3445788888864
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2.7e-13 Score=115.83 Aligned_cols=104 Identities=24% Similarity=0.293 Sum_probs=53.7
Q ss_pred EEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecC
Q 044913 66 ANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145 (395)
Q Consensus 66 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 145 (395)
+.+++++|.+.. +|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.++
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------------------- 70 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--------------------- 70 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC---------------------
Confidence 456666666642 333331 45555555555555444555555555555555555554
Q ss_pred CCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCC
Q 044913 146 QLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLF 196 (395)
Q Consensus 146 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 196 (395)
+..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|.+.
T Consensus 71 ---~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 71 ---AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ---ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 333333444555555555555555443344555666666666666655
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.4e-16 Score=139.30 Aligned_cols=138 Identities=25% Similarity=0.232 Sum_probs=119.7
Q ss_pred ccCCCCCcEEEccCCCCCCCCcc------ccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccC
Q 044913 83 IAGLKHLTGLYLHYNSLYGQIPR------EIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLG 156 (395)
Q Consensus 83 ~~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 156 (395)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45567788888888888877776 89999999999999999995 67 8899999999999999999 6787777
Q ss_pred CCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcch-hhhcCCCCCcEEEccCCCCCCCCCh
Q 044913 157 SLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIP-RKLADAPLLEVLDIRNNTLSGSVPP 225 (395)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~ 225 (395)
.+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 88999999999999996 45 58889999999999999996433 5789999999999999999876654
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=3.6e-13 Score=128.14 Aligned_cols=157 Identities=11% Similarity=0.037 Sum_probs=120.9
Q ss_pred EEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCC-CCCCCCCCccE-EEeec
Q 044913 67 NISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIP-PEIGYMGSLQV-LQLCY 144 (395)
Q Consensus 67 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~Ls~ 144 (395)
.++-++++++. +|..+ .+++++|+|++|.|+...+.+|.++++|++|+|++|.+.+.+| ..|.++++++. +.+..
T Consensus 13 ~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 57788888884 45544 3689999999999997667789999999999999999876665 46889988765 66778
Q ss_pred CCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccC-CCCCCcchhhhcCCC-CCcEEEccCCCCCCC
Q 044913 145 NQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSF-NHLFGSIPRKLADAP-LLEVLDIRNNTLSGS 222 (395)
Q Consensus 145 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~ 222 (395)
|++....|..|..+++|++|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 999988889999999999999999999976666666666777777755 445533344555543 577788888887743
Q ss_pred CChh
Q 044913 223 VPPA 226 (395)
Q Consensus 223 ~p~~ 226 (395)
.+..
T Consensus 170 ~~~~ 173 (350)
T 4ay9_X 170 HNSA 173 (350)
T ss_dssp CTTS
T ss_pred Chhh
Confidence 3333
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.45 E-value=1.2e-13 Score=131.04 Aligned_cols=103 Identities=22% Similarity=0.178 Sum_probs=60.0
Q ss_pred EEccCC-CCCCCCCCCCCCCCCccEEEeec-CCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCC
Q 044913 116 LYLNVN-NLSGDIPPEIGYMGSLQVLQLCY-NQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFN 193 (395)
Q Consensus 116 L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 193 (395)
++++++ .++ .+|. |..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|.|++..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 454 3455 55555566666653 5555555555666666666666666666555556666666666666666
Q ss_pred CCCCcchhhhcCCCCCcEEEccCCCCCC
Q 044913 194 HLFGSIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 194 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+|++..+..+..++ |+.|++++|+|..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 66654444444444 6677777666653
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=1.7e-15 Score=149.21 Aligned_cols=166 Identities=23% Similarity=0.229 Sum_probs=107.0
Q ss_pred CCEEEEEecCCCCCCc----CCccccCCCCCcEEEccCCCCCCCC-----ccccCCCCCCCEEEccCCCCCCC----CCC
Q 044913 63 GQVANISLQGKGLNGK----VSPAIAGLKHLTGLYLHYNSLYGQI-----PREIANLTELSDLYLNVNNLSGD----IPP 129 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~p~ 129 (395)
.+++.|++++|.+... ++..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++.. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3788888888888764 4666777888888888888776432 22334577888888888887743 455
Q ss_pred CCCCCCCccEEEeecCCCCCCCccccC-----CCCCCCEEeccCccCCCC----CccccCCCCCCCEEEccCCCCCCcch
Q 044913 130 EIGYMGSLQVLQLCYNQLTGSIPTQLG-----SLRKLSVLALQSNQLTGA----IPANLGDLGMLMRLDLSFNHLFGSIP 200 (395)
Q Consensus 130 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p 200 (395)
.+..+++|++|++++|.+....+..+. ..++|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 566677788888888776543332222 225677777777777653 34455566777777777777665433
Q ss_pred hhhcC-----CCCCcEEEccCCCCCC----CCChhhh
Q 044913 201 RKLAD-----APLLEVLDIRNNTLSG----SVPPALK 228 (395)
Q Consensus 201 ~~l~~-----l~~L~~L~l~~N~l~~----~~p~~l~ 228 (395)
..+.. .++|+.|++++|.+++ .+|..+.
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 33321 5567777777777764 4555543
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=2.4e-15 Score=148.15 Aligned_cols=165 Identities=19% Similarity=0.148 Sum_probs=128.9
Q ss_pred CCEEEEEecCCCCCCcCCcccc-----CCCCCcEEEccCCCCCCC----CccccCCCCCCCEEEccCCCCCCCC-----C
Q 044913 63 GQVANISLQGKGLNGKVSPAIA-----GLKHLTGLYLHYNSLYGQ----IPREIANLTELSDLYLNVNNLSGDI-----P 128 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----p 128 (395)
.+++.|++++|.+....+..+. .+++|+.|++++|.++.. ++..+..+++|++|++++|.+++.. +
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 5899999999998765554443 367999999999999864 5777888999999999999887432 2
Q ss_pred CCCCCCCCccEEEeecCCCCCC----CccccCCCCCCCEEeccCccCCCCCccccC-----CCCCCCEEEccCCCCCCc-
Q 044913 129 PEIGYMGSLQVLQLCYNQLTGS----IPTQLGSLRKLSVLALQSNQLTGAIPANLG-----DLGMLMRLDLSFNHLFGS- 198 (395)
Q Consensus 129 ~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~- 198 (395)
..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++.
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 2234688999999999998854 566777789999999999998754333332 336899999999999865
Q ss_pred ---chhhhcCCCCCcEEEccCCCCCCCCChhh
Q 044913 199 ---IPRKLADAPLLEVLDIRNNTLSGSVPPAL 227 (395)
Q Consensus 199 ---~p~~l~~l~~L~~L~l~~N~l~~~~p~~l 227 (395)
++..+..+++|+.|++++|.+++..+..+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence 56677788999999999999986555443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=1.7e-12 Score=122.36 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=29.3
Q ss_pred CCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCC
Q 044913 86 LKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYM 134 (395)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 134 (395)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++++|.+....+..|...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~ 147 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADS 147 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCC
Confidence 67777777776 6665556667777777777777776553333444433
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=7e-12 Score=118.85 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=82.8
Q ss_pred EecCC-CCCCcCCccccCCCCCcEEEccC-CCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCC
Q 044913 69 SLQGK-GLNGKVSPAIAGLKHLTGLYLHY-NSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQ 146 (395)
Q Consensus 69 ~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 146 (395)
+++++ ++.. +|. +..+++|+.|+|++ |.|.+..+..|.++++|++|+|++|.|++..|..|..+++|+.|+|++|.
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 5664 566 88899999999996 99988888889999999999999999998778888889999999999999
Q ss_pred CCCCCccccCCCCCCCEEeccCccCCC
Q 044913 147 LTGSIPTQLGSLRKLSVLALQSNQLTG 173 (395)
Q Consensus 147 l~~~~p~~l~~l~~L~~L~L~~n~l~~ 173 (395)
+++..+..|..++ |+.|+|.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8866666666555 8888888888774
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=5.8e-14 Score=134.69 Aligned_cols=166 Identities=20% Similarity=0.245 Sum_probs=125.0
Q ss_pred CCEEEEEecCCCCCCcCCccccC-----CCCCcEEEccCCCCCCCCcccc-CCCCCCCEEEccCCCCCCCCCCCC-----
Q 044913 63 GQVANISLQGKGLNGKVSPAIAG-----LKHLTGLYLHYNSLYGQIPREI-ANLTELSDLYLNVNNLSGDIPPEI----- 131 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~----- 131 (395)
..++.|+|++|.++......+.. .++|+.|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 47899999999998654444433 3799999999999975433333 345689999999999975433333
Q ss_pred CCCCCccEEEeecCCCCCC----CccccCCCCCCCEEeccCccCCCC----CccccCCCCCCCEEEccCCCCCCc----c
Q 044913 132 GYMGSLQVLQLCYNQLTGS----IPTQLGSLRKLSVLALQSNQLTGA----IPANLGDLGMLMRLDLSFNHLFGS----I 199 (395)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~ 199 (395)
...++|++|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+...++|+.|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 3467899999999998742 344457789999999999998752 355667788999999999999853 3
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCCChhhh
Q 044913 200 PRKLADAPLLEVLDIRNNTLSGSVPPALK 228 (395)
Q Consensus 200 p~~l~~l~~L~~L~l~~N~l~~~~p~~l~ 228 (395)
...+...++|++|++++|.++..-...+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 44566779999999999999854444443
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=5.8e-11 Score=111.80 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=129.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCC----CCCCCCCC-------
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNL----SGDIPPEI------- 131 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~p~~~------- 131 (395)
.+++.|+|.+ .+..+...+|.++++|+.|++.+|.+....+.+|..+.++..+.+..+.. .......|
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 4789999999 88888889999999999999999999877788888877777776655211 10000111
Q ss_pred -------------------------------------------CCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccC
Q 044913 132 -------------------------------------------GYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQS 168 (395)
Q Consensus 132 -------------------------------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 168 (395)
..+++|+.|++++|.++......|.++.+|+.+++.+
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 0267899999999988877777899999999999998
Q ss_pred ccCCCCCccccCCCCCCC-EEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCc
Q 044913 169 NQLTGAIPANLGDLGMLM-RLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNE 232 (395)
Q Consensus 169 n~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~ 232 (395)
| ++...+..|.++.+|+ .+++.+ .++...+.+|.++++|+.|++++|.++..-+..|.++..
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 8 7756677899999999 999988 677566678999999999999999988665556655443
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.03 E-value=1.1e-11 Score=125.70 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=81.4
Q ss_pred CCCEEEEEecCCCCC-CcCCccccCCCCCcEEEccC-----------CCCCCC-CccccCCCCCCCEEEccCCCCCCCCC
Q 044913 62 KGQVANISLQGKGLN-GKVSPAIAGLKHLTGLYLHY-----------NSLYGQ-IPREIANLTELSDLYLNVNNLSGDIP 128 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p 128 (395)
..+++.|++. +.+. ..++..+..+++|+.|++++ |.+++. ++..+..+++|++|++..|.+++..+
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 3467777776 3333 22333335566777777772 444422 22223446667777776666664444
Q ss_pred CCCCC-CCCccEEEee----cCCCCCC-----CccccCCCCCCCEEeccCc--cCCCCCcccc-CCCCCCCEEEccCCCC
Q 044913 129 PEIGY-MGSLQVLQLC----YNQLTGS-----IPTQLGSLRKLSVLALQSN--QLTGAIPANL-GDLGMLMRLDLSFNHL 195 (395)
Q Consensus 129 ~~~~~-l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~L~~n--~l~~~~p~~~-~~l~~L~~L~L~~N~l 195 (395)
..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+++.+ .+++..+..+ ..+++|+.|++++|.+
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence 44433 5666666664 4445432 2222444566666666532 2333222222 2355566666666665
Q ss_pred CC-cchhhhcCCCCCcEEEccCCCCCC
Q 044913 196 FG-SIPRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 196 ~~-~~p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
++ .++..+..+++|+.|++++|++++
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 54 233344555666666666666543
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=5.9e-12 Score=120.72 Aligned_cols=158 Identities=20% Similarity=0.170 Sum_probs=114.7
Q ss_pred CCEEEEEecCCCCCCcCCccc-cCCCCCcEEEccCCCCCCCCcccc-----CCCCCCCEEEccCCCCCCC----CCCCCC
Q 044913 63 GQVANISLQGKGLNGKVSPAI-AGLKHLTGLYLHYNSLYGQIPREI-----ANLTELSDLYLNVNNLSGD----IPPEIG 132 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~~~ 132 (395)
.+++.|+|++|.+.......+ ..+++|+.|+|++|.++......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 589999999999975544433 346789999999999985544443 3578999999999998742 333456
Q ss_pred CCCCccEEEeecCCCCCC----CccccCCCCCCCEEeccCccCCCC----CccccCCCCCCCEEEccCCCCCCcchhhhc
Q 044913 133 YMGSLQVLQLCYNQLTGS----IPTQLGSLRKLSVLALQSNQLTGA----IPANLGDLGMLMRLDLSFNHLFGSIPRKLA 204 (395)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 204 (395)
.+++|++|+|++|.+... ++..+...++|++|+|++|.+++. ++..+...++|++|+|++|.|++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 788999999999998743 245667788999999999999853 344455678999999999999865555554
Q ss_pred CCCC-----CcEEE--ccCCCCC
Q 044913 205 DAPL-----LEVLD--IRNNTLS 220 (395)
Q Consensus 205 ~l~~-----L~~L~--l~~N~l~ 220 (395)
.+.. |+.+. +..|.++
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 3321 55665 5555554
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.00 E-value=3.3e-11 Score=122.30 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=26.6
Q ss_pred ccccCCCCCCCEEeccCccCCCCCc-cccCCCCCCCEEEccCCCCC-CcchhhhcCCCCCcEEEcc
Q 044913 152 PTQLGSLRKLSVLALQSNQLTGAIP-ANLGDLGMLMRLDLSFNHLF-GSIPRKLADAPLLEVLDIR 215 (395)
Q Consensus 152 p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~l~ 215 (395)
|..+..+++|++|++++|.+++... ..+..+++|+.|+++ +.+. +.++.....+++|++|+++
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 3334444445555555544432111 223444555555554 2222 1222223345555555555
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=3.3e-08 Score=95.49 Aligned_cols=169 Identities=12% Similarity=0.056 Sum_probs=113.5
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEe
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQL 142 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 142 (395)
.+++.++|.+|.+......+|. ..+|+.+.|..+ +......+|.++++|+.+++..| ++......|.+ .+|+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 4788999999888877777776 588888888844 66667778888888888888875 45344556666 67888877
Q ss_pred ecCCCCCCCccccCCCCCCCEEeccCccCC-----CCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCC
Q 044913 143 CYNQLTGSIPTQLGSLRKLSVLALQSNQLT-----GAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNN 217 (395)
Q Consensus 143 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 217 (395)
. +.++......|.++++|+.+.+.+|.+. ...+..|..+++|+.+.+. +.++.....+|.++.+|+.+++..|
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 4 3455455667777788888887776654 2444567777778887777 3465444556777777777777544
Q ss_pred CCCCCCChhhh--ccCccccccC
Q 044913 218 TLSGSVPPALK--RLNEGFLYEN 238 (395)
Q Consensus 218 ~l~~~~p~~l~--~l~~l~~~~~ 238 (395)
++..-...|. +++.+.+..+
T Consensus 334 -l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 334 -VTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp -CCEECTTSSSSSCCCEEEECCS
T ss_pred -ccEEcHHhCCCCCCCEEEEcCC
Confidence 4433333333 3344444443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.78 E-value=4.3e-08 Score=94.70 Aligned_cols=145 Identities=13% Similarity=0.060 Sum_probs=71.7
Q ss_pred EEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeec
Q 044913 65 VANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCY 144 (395)
Q Consensus 65 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 144 (395)
++.+.+.. .+..+...+|.++++|+.++|.+|.++......|. ..+|+.+.|..+ ++......|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44444443 34444444555555555555555555533333443 345555555432 4333344555555555555554
Q ss_pred CCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCC-----CcchhhhcCCCCCcEEEcc
Q 044913 145 NQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLF-----GSIPRKLADAPLLEVLDIR 215 (395)
Q Consensus 145 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~l~ 215 (395)
+ ++......|.+ .+|+.+.+ .+.++......|..+++|+.+.+.+|.+. ...+..|.++++|+.+++.
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred C-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 3 33233344444 45555555 23343334455666666666666655543 2233455666666666665
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.77 E-value=1e-09 Score=111.19 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=70.5
Q ss_pred CCCEEEEEecCCCCCCcCCcccc-CCCCCcEEEccCC-CCCCC-CccccCCCCCCCEEEccCCCCCCCCCCCC----CCC
Q 044913 62 KGQVANISLQGKGLNGKVSPAIA-GLKHLTGLYLHYN-SLYGQ-IPREIANLTELSDLYLNVNNLSGDIPPEI----GYM 134 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l 134 (395)
..+++.|+|++|.+.+..+..+. .+++|+.|+|++| .+... ++..+..+++|++|+|++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34788999999888776666665 6888888888888 44422 44445578888888888888765443332 356
Q ss_pred CCccEEEeecCC--CCCC-CccccCCCCCCCEEeccCc
Q 044913 135 GSLQVLQLCYNQ--LTGS-IPTQLGSLRKLSVLALQSN 169 (395)
Q Consensus 135 ~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L~~n 169 (395)
++|+.|++++|. +... ++..+..+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 688888888776 2110 1111233566777777665
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.74 E-value=4.5e-10 Score=113.85 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=88.5
Q ss_pred CCCEEEEEecCCCCCCc-CCccccCCCCCcEEEccC---------CCCCCCCcccc-CCCCCCCEEEccCCCCCCCCCCC
Q 044913 62 KGQVANISLQGKGLNGK-VSPAIAGLKHLTGLYLHY---------NSLYGQIPREI-ANLTELSDLYLNVNNLSGDIPPE 130 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~ 130 (395)
..+++.|++.+| +... ++.....+++|+.|++.+ +.+++.....+ ..+++|++|++..|.+++..+..
T Consensus 313 ~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 313 CPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp CTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred CCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 357888888877 4322 222223577888888733 34443222222 23677777777777776443333
Q ss_pred CC-CCCCccEEEee--c----CCCCCCC-----ccccCCCCCCCEEeccCccCCCCCccccCC-CCCCCEEEccCCCCCC
Q 044913 131 IG-YMGSLQVLQLC--Y----NQLTGSI-----PTQLGSLRKLSVLALQSNQLTGAIPANLGD-LGMLMRLDLSFNHLFG 197 (395)
Q Consensus 131 ~~-~l~~L~~L~Ls--~----n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~ 197 (395)
+. .+++|+.|+++ + +.++... +..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 33 36777777777 2 3343211 11244566777777755 444333333333 6667777777777665
Q ss_pred cchhhh-cCCCCCcEEEccCCCCCC
Q 044913 198 SIPRKL-ADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 198 ~~p~~l-~~l~~L~~L~l~~N~l~~ 221 (395)
.....+ ..+++|+.|++++|++++
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHHHHhcCCCcCEEECcCCCCcH
Confidence 444333 456677777777777643
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=2.8e-09 Score=101.41 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=87.5
Q ss_pred CCEEEEEecCCCCC---------CcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCC--
Q 044913 63 GQVANISLQGKGLN---------GKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEI-- 131 (395)
Q Consensus 63 ~~l~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-- 131 (395)
.+++.|.+.+.... +.+...+..+++|+.|+|++|.-. .++. + .+++|+.|+|..+.++......+
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 46777777654321 123345566777888887776311 1222 3 26777888877776653222222
Q ss_pred CCCCCccEEEeecC--CCCCC-----Ccccc--CCCCCCCEEeccCccCCCCCcccc---CCCCCCCEEEccCCCCCCcc
Q 044913 132 GYMGSLQVLQLCYN--QLTGS-----IPTQL--GSLRKLSVLALQSNQLTGAIPANL---GDLGMLMRLDLSFNHLFGSI 199 (395)
Q Consensus 132 ~~l~~L~~L~Ls~n--~l~~~-----~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~ 199 (395)
..+++|+.|+|+.+ ...+. +...+ ..+++|++|+|.+|.+.+..+..+ ..+++|++|+|+.|.+.+.-
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 25677777777531 11111 01112 246778888887777654222222 24667788888877776532
Q ss_pred ----hhhhcCCCCCcEEEccCCCCCC
Q 044913 200 ----PRKLADAPLLEVLDIRNNTLSG 221 (395)
Q Consensus 200 ----p~~l~~l~~L~~L~l~~N~l~~ 221 (395)
+..+..+++|+.|++++|.++.
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhhcccCCcceEEECCCCcCCH
Confidence 2233446777888887777764
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=3.1e-08 Score=94.24 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=108.4
Q ss_pred CCCEEEEEecCCCCCC-c-------CCccccCCCCCcEEEccCCCCC---------CCCccccCCCCCCCEEEccCCCCC
Q 044913 62 KGQVANISLQGKGLNG-K-------VSPAIAGLKHLTGLYLHYNSLY---------GQIPREIANLTELSDLYLNVNNLS 124 (395)
Q Consensus 62 ~~~l~~L~L~~n~l~~-~-------~~~~~~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~ 124 (395)
..+|+.|.+......+ . +..+...+++|+.|.+.++... +.+...+..+|+|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467888888666442 1 1234557899999999765432 124456678899999999988422
Q ss_pred CCCCCCCCCCCCccEEEeecCCCCCCCccccC--CCCCCCEEeccC--ccCCCC-----Ccccc--CCCCCCCEEEccCC
Q 044913 125 GDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLG--SLRKLSVLALQS--NQLTGA-----IPANL--GDLGMLMRLDLSFN 193 (395)
Q Consensus 125 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~-----~p~~~--~~l~~L~~L~L~~N 193 (395)
.++. + .+++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +...+ ..+++|++|+|.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 3343 4 389999999999887644333343 689999999853 222211 11223 35789999999999
Q ss_pred CCCCcchhhhc---CCCCCcEEEccCCCCCCC
Q 044913 194 HLFGSIPRKLA---DAPLLEVLDIRNNTLSGS 222 (395)
Q Consensus 194 ~l~~~~p~~l~---~l~~L~~L~l~~N~l~~~ 222 (395)
.+.+..+..+. .+++|++|+|+.|.+.+.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 99765444443 578999999999999863
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=2.4e-08 Score=85.82 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=69.9
Q ss_pred CccccCCCCCcEEEccCC-CCCCC----CccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccc
Q 044913 80 SPAIAGLKHLTGLYLHYN-SLYGQ----IPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQ 154 (395)
Q Consensus 80 ~~~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 154 (395)
...+...+.|+.|+|++| .+... +...+...++|++|+|++|.+...... .+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~ 88 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEM 88 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHH
Confidence 344556677777777777 66532 334445555666666666665421110 11122
Q ss_pred cCCCCCCCEEeccCccCCCC----CccccCCCCCCCEEEc--cCCCCCCc----chhhhcCCCCCcEEEccCCCCC
Q 044913 155 LGSLRKLSVLALQSNQLTGA----IPANLGDLGMLMRLDL--SFNHLFGS----IPRKLADAPLLEVLDIRNNTLS 220 (395)
Q Consensus 155 l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 220 (395)
+...++|++|+|++|.+... +...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 23334556666666655532 3344556667788888 67777643 3445566678888888888775
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=1.6e-08 Score=86.86 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=60.2
Q ss_pred CCCEEEEEecCC-CCCCc----CCccccCCCCCcEEEccCCCCCCC----CccccCCCCCCCEEEccCCCCCCC----CC
Q 044913 62 KGQVANISLQGK-GLNGK----VSPAIAGLKHLTGLYLHYNSLYGQ----IPREIANLTELSDLYLNVNNLSGD----IP 128 (395)
Q Consensus 62 ~~~l~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p 128 (395)
...++.|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 457999999999 88743 455667789999999999999743 344555667888888888887742 22
Q ss_pred CCCCCCCCccEEEe--ecCCCC
Q 044913 129 PEIGYMGSLQVLQL--CYNQLT 148 (395)
Q Consensus 129 ~~~~~l~~L~~L~L--s~n~l~ 148 (395)
..+...++|++|+| ++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHhCCCceEEEecCCCCCCC
Confidence 33444445555555 445444
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=2.1e-08 Score=90.99 Aligned_cols=80 Identities=25% Similarity=0.243 Sum_probs=49.3
Q ss_pred CCCCccEEEeecCCCCC--CCccccCCCCCCCEEeccCccCCCC-CccccCCCCCCCEEEccCCCCCCcch-------hh
Q 044913 133 YMGSLQVLQLCYNQLTG--SIPTQLGSLRKLSVLALQSNQLTGA-IPANLGDLGMLMRLDLSFNHLFGSIP-------RK 202 (395)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p-------~~ 202 (395)
.+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.|++. --..+..+ +|+.|+|++|.+.+.+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 45566666666666665 2344555667777777777777643 11223333 77888888888775443 24
Q ss_pred hcCCCCCcEEE
Q 044913 203 LADAPLLEVLD 213 (395)
Q Consensus 203 l~~l~~L~~L~ 213 (395)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56778888776
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=7.1e-07 Score=80.85 Aligned_cols=68 Identities=25% Similarity=0.218 Sum_probs=49.7
Q ss_pred CCCCCCCEEeccCccCCC--CCccccCCCCCCCEEEccCCCCCCc-chhhhcCCCCCcEEEccCCCCCCCCC
Q 044913 156 GSLRKLSVLALQSNQLTG--AIPANLGDLGMLMRLDLSFNHLFGS-IPRKLADAPLLEVLDIRNNTLSGSVP 224 (395)
Q Consensus 156 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~p 224 (395)
.++++|+.|+|++|.|++ .+|..+..+++|+.|+|++|.+++. ....+..+ +|+.|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence 457788888888888886 3456667788888888888888864 11223333 88888888888887666
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.09 E-value=2.2e-06 Score=68.90 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=64.3
Q ss_pred EEeccCccCC-CCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhccCccccccCCcc
Q 044913 163 VLALQSNQLT-GAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKRLNEGFLYENNLE 241 (395)
Q Consensus 163 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l~~~~~n~~ 241 (395)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~---------------------- 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW---------------------- 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC----------------------
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe----------------------
Confidence 5666666665 23443221 3578888888888866666777888888888777766
Q ss_pred CcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 044913 242 LCGVGFSALKTCSASSNINPSRPEPYGAATTHSTRNIPETA 282 (395)
Q Consensus 242 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (395)
.|+|.+.+|..|......... .....|..|...++.....
T Consensus 68 ~CdC~l~~l~~wl~~~~~~~~-~~~~~C~~P~~l~g~~l~~ 107 (130)
T 3rfe_A 68 RCDCRLVPLRAWLAGRPERAP-YRDLRCVAPPALRGRLLPY 107 (130)
T ss_dssp BCSGGGHHHHHHHHTSSCSGG-GTTCBCCBSTTTTTCBGGG
T ss_pred eccCccHHHHHHHHhCccccc-ccCcEeCcChHHcCCCccc
Confidence 599999999988765543222 3567888887776665544
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=9.2e-06 Score=68.52 Aligned_cols=83 Identities=10% Similarity=0.054 Sum_probs=41.6
Q ss_pred CccEEEeecCCCCCCCccccCCCCCCCEEeccCcc-CCCCCccccCCC----CCCCEEEccCCC-CCCcchhhhcCCCCC
Q 044913 136 SLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQ-LTGAIPANLGDL----GMLMRLDLSFNH-LFGSIPRKLADAPLL 209 (395)
Q Consensus 136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~l~~l~~L 209 (395)
.|+.||++++.++..--..+..+++|++|+|+++. +++.--..+..+ ++|+.|+|++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444555444443333334455555555555553 332211223332 246666666653 554434455666677
Q ss_pred cEEEccCCC
Q 044913 210 EVLDIRNNT 218 (395)
Q Consensus 210 ~~L~l~~N~ 218 (395)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777776654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=6.4e-06 Score=69.47 Aligned_cols=83 Identities=10% Similarity=0.047 Sum_probs=49.7
Q ss_pred CCEEEEEecCCCCCCcCCccccCCCCCcEEEccCCC-CCCCCccccCCC----CCCCEEEccCCC-CCCCCCCCCCCCCC
Q 044913 63 GQVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNS-LYGQIPREIANL----TELSDLYLNVNN-LSGDIPPEIGYMGS 136 (395)
Q Consensus 63 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~ 136 (395)
-+++.||++++.++..--..+.++++|+.|+|++|. |++.--..+..+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368888888888776555666777788888887774 553333334443 356666666653 54322223444555
Q ss_pred ccEEEeecC
Q 044913 137 LQVLQLCYN 145 (395)
Q Consensus 137 L~~L~Ls~n 145 (395)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.65 E-value=0.00014 Score=69.56 Aligned_cols=109 Identities=9% Similarity=0.090 Sum_probs=48.8
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCC
Q 044913 105 REIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGM 184 (395)
Q Consensus 105 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 184 (395)
.+|.++..|+.+.+..+... .....|.++.+|+.+.+.. .+.......|.++.+|+.+.+..+ ++..-...|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34444555555555443322 3333444455555555432 233233344445555555555432 32233344555555
Q ss_pred CCEEEccCCCCCCcchhhhcCCCCCcEEEccCC
Q 044913 185 LMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNN 217 (395)
Q Consensus 185 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 217 (395)
|+.+.+..+ ++..-..+|.++.+|+.+++.++
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 555555332 33233344555555555555444
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.54 E-value=0.00055 Score=65.43 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=79.6
Q ss_pred CccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCC
Q 044913 80 SPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLR 159 (395)
Q Consensus 80 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 159 (395)
..+|.++..|+.+.+..+... .....|..+..++.+.+..+.+. ...|..+.+|+.+.+..+ +.......|.++.
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred cccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCC
Confidence 345556666666666555332 44455666666666666554332 235666777777777654 4434456677777
Q ss_pred CCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEccC
Q 044913 160 KLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRN 216 (395)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 216 (395)
+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 7777777543 44344566777777777777665 5544455677777777777644
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.50 E-value=0.0005 Score=65.24 Aligned_cols=129 Identities=10% Similarity=0.041 Sum_probs=71.8
Q ss_pred cccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCC
Q 044913 82 AIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKL 161 (395)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 161 (395)
.+.....|+.+.+..+ +.......+.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|.++.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444555555555433 33234455566666666666554 44344455666666666666543 332334456666667
Q ss_pred CEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEEEc
Q 044913 162 SVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDI 214 (395)
Q Consensus 162 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 214 (395)
+.+.+.++.++..-...|.++.+|+.+.|..+ ++..-..+|.++.+|+.+.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 77766666665444556666666766666543 44333445666666665554
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.41 E-value=0.00063 Score=64.56 Aligned_cols=139 Identities=13% Similarity=0.054 Sum_probs=103.3
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
.++.+.+..+ +......+|.++..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ +.......|..+.+|+.+.+.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence 3445555432 44455677888999999999876 66566778899999999999765 553555688999999999999
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCC
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAP 207 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 207 (395)
++.+.......|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++..-..+|.++.
T Consensus 295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 98888677788999999999999755 55455677899999999888654 4433334555443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.00053 Score=65.57 Aligned_cols=140 Identities=12% Similarity=0.027 Sum_probs=104.1
Q ss_pred CEEEEEecCCCCCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEee
Q 044913 64 QVANISLQGKGLNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLC 143 (395)
Q Consensus 64 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 143 (395)
.++.+.+..+ +......+|.....++.+.+..+.+ ....|..+.+|+.+.+..+ ++......|.++.+|+.+++.
T Consensus 254 ~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 254 DLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp SCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cceeEEcCCC-cceeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 3445555444 2334556788888999988876643 3457888999999999865 654556789999999999997
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCCCCCcchhhhcCCCCCcEE
Q 044913 144 YNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVL 212 (395)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 212 (395)
.+ ++......|.++.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++ .+...|.++++|+.+
T Consensus 329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 329 YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 54 66566778999999999999876 66556678999999999999765 33 344567777777754
No 161
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=97.25 E-value=0.00033 Score=43.82 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=21.2
Q ss_pred CCcceEEehhHHHHHHHHHHHHHHHHHHhhcccc
Q 044913 299 SHQASVVAGIIVVVVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 299 ~~~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~ 332 (395)
+....+.++|++++++++++++.++++.|||+++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 3345567777777777666666666555555444
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.17 E-value=0.0014 Score=62.52 Aligned_cols=113 Identities=10% Similarity=0.052 Sum_probs=68.3
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEcc
Q 044913 112 ELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLGSLRKLSVLALQSNQLTGAIPANLGDLGMLMRLDLS 191 (395)
Q Consensus 112 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (395)
.+..+.+..+ ++......|..+..|+.+.+..+... .....|.++..|+.+.+. +.++......|.++.+|+.+.+.
T Consensus 243 ~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 243 EDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 3444444332 22234456777788888877655433 445567777888888875 34443445667778888888886
Q ss_pred CCCCCCcchhhhcCCCCCcEEEccCCCCCCCCChhhhc
Q 044913 192 FNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPPALKR 229 (395)
Q Consensus 192 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~l~~ 229 (395)
.+ ++.....+|.++.+|+.+.+..+ ++..-...|.+
T Consensus 320 ~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 320 EG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred Cc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 54 54344557777888888888544 44222334543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.00 E-value=0.00014 Score=62.38 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=61.9
Q ss_pred cccCCCCCcEEEccCC-CCCCC----CccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecCCCCCCCccccC
Q 044913 82 AIAGLKHLTGLYLHYN-SLYGQ----IPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYNQLTGSIPTQLG 156 (395)
Q Consensus 82 ~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 156 (395)
.+.+-+.|+.|+|++| .|... +...+..-+.|+.|+|++|.+.+.....| ...+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al--------------------A~aL~ 95 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL--------------------IELIE 95 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH--------------------HHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH--------------------HHHHh
Confidence 3445566777777764 55421 33344445566666666665553222211 12222
Q ss_pred CCCCCCEEeccCccCCC----CCccccCCCCCCCEEEccCC---CCCC----cchhhhcCCCCCcEEEccCCCC
Q 044913 157 SLRKLSVLALQSNQLTG----AIPANLGDLGMLMRLDLSFN---HLFG----SIPRKLADAPLLEVLDIRNNTL 219 (395)
Q Consensus 157 ~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N---~l~~----~~p~~l~~l~~L~~L~l~~N~l 219 (395)
.-+.|++|+|++|.|.+ .+...+..-+.|+.|+|++| .+.. .+...+..-+.|+.|+++.|.+
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33455555555555543 12334455556777777654 2332 2345566667788888876654
No 164
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=96.97 E-value=0.00066 Score=42.35 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=20.7
Q ss_pred cceEEehhHHHHHHHHHHHHHHHHHHhhccccc
Q 044913 301 QASVVAGIIVVVVALSAIGILAFTQYRRRKQKL 333 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~~ 333 (395)
...+.++|++++++++++++.++++.|||++++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 455677777777776666666665555555443
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=9.1e-05 Score=63.58 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=57.6
Q ss_pred CCCEEEEEecCC-CCCC----cCCccccCCCCCcEEEccCCCCCCC----CccccCCCCCCCEEEccCCCCCCCC----C
Q 044913 62 KGQVANISLQGK-GLNG----KVSPAIAGLKHLTGLYLHYNSLYGQ----IPREIANLTELSDLYLNVNNLSGDI----P 128 (395)
Q Consensus 62 ~~~l~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----p 128 (395)
...++.|+|++| .|.. .+.+++..-+.|+.|+|++|.|... +...+..-+.|++|+|+.|.|.... .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 457999999986 7763 2456677889999999999999843 4445556678888888888887331 1
Q ss_pred CCCCCCCCccEEEeecC
Q 044913 129 PEIGYMGSLQVLQLCYN 145 (395)
Q Consensus 129 ~~~~~l~~L~~L~Ls~n 145 (395)
..+..-+.|+.|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 22333344555555543
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=96.74 E-value=0.0012 Score=41.12 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=13.7
Q ss_pred EehhHHHHHHHHHHHHHHHHHHhhcccc
Q 044913 305 VAGIIVVVVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~~~~~rrrk~~ 332 (395)
+++.++++++++++++.++++.|||+++
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 3333334555555555555555555444
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.51 E-value=0.0045 Score=49.29 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=13.5
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCccEEEeecC
Q 044913 113 LSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145 (395)
Q Consensus 113 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 145 (395)
|++|+|++|.|+...+..|..+++|++|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 444444444444222233333444444444444
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=93.72 E-value=0.03 Score=33.83 Aligned_cols=25 Identities=20% Similarity=0.192 Sum_probs=11.9
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHhh
Q 044913 304 VVAGIIVVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 304 i~~~vv~~v~~~~~~~~~~~~~~rr 328 (395)
+..+++++++.+++++.++++++||
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeeeehHHHHHHHHHHHHHHHHeec
Confidence 3333344444455555555555544
No 169
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=89.44 E-value=0.1 Score=32.06 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=7.2
Q ss_pred ceEEehhHHHHHHHH
Q 044913 302 ASVVAGIIVVVVALS 316 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~ 316 (395)
..+++++++++++++
T Consensus 13 ~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLL 27 (41)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred EEEEeehhHHHHHHH
Confidence 344455555555433
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=81.69 E-value=0.22 Score=29.19 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=10.7
Q ss_pred EehhHHHHHHHHHHHHHHHHHHhhc
Q 044913 305 VAGIIVVVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~~~~~rrr 329 (395)
++++++ ++++++++..+..+.|||
T Consensus 11 aagVvg-lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 11 IATVVG-VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHH-HHHHHHHTTTTTHHHHHC
T ss_pred HHHHHH-HHHHHHHHHHhheEEeec
Confidence 334444 444444444444444444
No 171
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=76.47 E-value=2.9 Score=27.09 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=9.5
Q ss_pred ceEEehhHHHHHHHHHHHHHHH
Q 044913 302 ASVVAGIIVVVVALSAIGILAF 323 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~ 323 (395)
+.++++++++++++++++++.+
T Consensus 13 wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 172
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=71.51 E-value=3 Score=25.83 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=18.3
Q ss_pred CCcceEEehhHHHHHHHHHHHHHHHHHHhhcccc
Q 044913 299 SHQASVVAGIIVVVVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 299 ~~~~~i~~~vv~~v~~~~~~~~~~~~~~rrrk~~ 332 (395)
.....++++++++++ ++++.++.+..++.++++
T Consensus 12 ~IA~gVVgGv~~~~i-i~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 12 SIATGMVGALLLLLV-VALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp SSTHHHHHHHHHHHH-HHHHHHHHHHTTTCCSCC
T ss_pred eEEeehhHHHHHHHH-HHHHHHHHhhhhHhhccC
Confidence 334555555555444 445666666677666553
No 173
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=69.80 E-value=5.2 Score=25.85 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=10.0
Q ss_pred ceEEehhHHHHHHHHHHHHHHH
Q 044913 302 ASVVAGIIVVVVALSAIGILAF 323 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~ 323 (395)
+.++++++++++++++++++.+
T Consensus 10 WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444333
No 174
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=64.49 E-value=0.65 Score=33.01 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=10.8
Q ss_pred cceEEehhHHHHHHHHHHHHHHH
Q 044913 301 QASVVAGIIVVVVALSAIGILAF 323 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~~~~~~~~ 323 (395)
...++++++++++++.+++++++
T Consensus 10 ~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444443
No 175
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=63.70 E-value=7.4 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc
Q 044913 308 IIVVVVALSAIGILAFTQYRRRK 330 (395)
Q Consensus 308 vv~~v~~~~~~~~~~~~~~rrrk 330 (395)
++++.++++++.-..|.++|.|+
T Consensus 12 ~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcccc
Confidence 34444444444444444454443
No 176
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=63.44 E-value=4.1 Score=25.18 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhccc
Q 044913 317 AIGILAFTQYRRRKQ 331 (395)
Q Consensus 317 ~~~~~~~~~~rrrk~ 331 (395)
++.++.+..++++++
T Consensus 28 ~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 28 LTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHTTCSSCC
T ss_pred HHHHHHhhhhhhhhc
Confidence 444444444444443
No 177
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.54 E-value=26 Score=25.73 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=21.4
Q ss_pred CCCcCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCEEEccC
Q 044913 75 LNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNV 120 (395)
Q Consensus 75 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 120 (395)
++.+-..+|.+++.|+.+.|-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555443 2223344455555555555443
No 178
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.05 E-value=31 Score=25.22 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=32.0
Q ss_pred CCCCCCCccccCCCCCCCEEEccCCCCCCCCCCCCCCCCCccEEEeecC
Q 044913 97 NSLYGQIPREIANLTELSDLYLNVNNLSGDIPPEIGYMGSLQVLQLCYN 145 (395)
Q Consensus 97 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 145 (395)
..++.+-..+|.++.+|+.+.|..+ ++......|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455556677788888888877765 33255567777777777776553
No 179
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=62.13 E-value=2.2 Score=25.39 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=3.1
Q ss_pred EEehhHHH
Q 044913 304 VVAGIIVV 311 (395)
Q Consensus 304 i~~~vv~~ 311 (395)
++.++++.
T Consensus 10 vl~avlal 17 (39)
T 2l6w_A 10 VISAILAL 17 (39)
Confidence 33344333
No 180
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=54.88 E-value=3.3 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 044913 309 IVVVVALSAIGILAFTQYRRRKQK 332 (395)
Q Consensus 309 v~~v~~~~~~~~~~~~~~rrrk~~ 332 (395)
++.++++.++.++.+.+++.+++|
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHhheehhhhhccC
Confidence 334445555555566666555543
No 181
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=54.38 E-value=17 Score=24.39 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=16.0
Q ss_pred EEehhHHHHHHHHHHHHHHHHHHhhccc
Q 044913 304 VVAGIIVVVVALSAIGILAFTQYRRRKQ 331 (395)
Q Consensus 304 i~~~vv~~v~~~~~~~~~~~~~~rrrk~ 331 (395)
++++++..++...+.+++++.+++||++
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555556666677877755544443
No 182
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=49.45 E-value=9.2 Score=23.36 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=5.0
Q ss_pred EEehhHHHHHHHH
Q 044913 304 VVAGIIVVVVALS 316 (395)
Q Consensus 304 i~~~vv~~v~~~~ 316 (395)
++.++++++++++
T Consensus 13 Ii~s~l~GLllL~ 25 (42)
T 2k1a_A 13 VLVGVLGGLLLLT 25 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 183
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=47.81 E-value=14 Score=25.26 Aligned_cols=9 Identities=22% Similarity=0.135 Sum_probs=3.4
Q ss_pred HHhhccccc
Q 044913 325 QYRRRKQKL 333 (395)
Q Consensus 325 ~~rrrk~~~ 333 (395)
|+.-|-+|.
T Consensus 35 wcylrlqri 43 (90)
T 1zza_A 35 WCYLRLQRI 43 (90)
T ss_dssp HTTTSSCSS
T ss_pred HHHHHHHHH
Confidence 333333343
No 184
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=46.50 E-value=15 Score=21.99 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=14.6
Q ss_pred EehhHHHHHHHHHHHHHHHHHHhh
Q 044913 305 VAGIIVVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~~~~~rr 328 (395)
+++.+++++++++++-++|...|+
T Consensus 22 i~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 22 IGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666666666655553
No 185
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=43.37 E-value=15 Score=21.14 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 044913 312 VVALSAIGILAF 323 (395)
Q Consensus 312 v~~~~~~~~~~~ 323 (395)
+++++++++.+|
T Consensus 17 i~~t~~i~~~vy 28 (33)
T 2l34_A 17 LVLTVLIALAVY 28 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 186
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=38.11 E-value=10 Score=23.22 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=7.9
Q ss_pred eEEehhHHHHHHHHHHHHHH
Q 044913 303 SVVAGIIVVVVALSAIGILA 322 (395)
Q Consensus 303 ~i~~~vv~~v~~~~~~~~~~ 322 (395)
.++.+++++++++.++.+++
T Consensus 11 ~Iv~gvi~~ivliGl~lLli 30 (43)
T 2k9j_B 11 VVLLSVMGAILLIGLAALLI 30 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333
No 187
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.83 E-value=23 Score=24.87 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=16.0
Q ss_pred ceEEehhHHHHHHHHHHHHHHHHHHh
Q 044913 302 ASVVAGIIVVVVALSAIGILAFTQYR 327 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~~~~r 327 (395)
.-+++++.+++.+++++++++++.++
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556666667777777776
No 188
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.10 E-value=71 Score=20.54 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=20.6
Q ss_pred cceEEehhHHHHHHHHHHHHHHHHHHhh
Q 044913 301 QASVVAGIIVVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 301 ~~~i~~~vv~~v~~~~~~~~~~~~~~rr 328 (395)
...++..++.++..+++++++++..|+.
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666777777788888888888864
No 189
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=30.66 E-value=42 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=9.2
Q ss_pred EehhHHHHHHHHHHHHHHHHH
Q 044913 305 VAGIIVVVVALSAIGILAFTQ 325 (395)
Q Consensus 305 ~~~vv~~v~~~~~~~~~~~~~ 325 (395)
..++|.+.+.+.++++++..+
T Consensus 6 L~GIVlGlipvtl~GLfv~Ay 26 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYAAY 26 (37)
T ss_dssp ---CHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHH
Confidence 445555555555555444433
No 190
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=29.79 E-value=67 Score=20.64 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=19.7
Q ss_pred ceEEehhHHHHHHHHHHHHHHHHHHhh
Q 044913 302 ASVVAGIIVVVVALSAIGILAFTQYRR 328 (395)
Q Consensus 302 ~~i~~~vv~~v~~~~~~~~~~~~~~rr 328 (395)
..++..++.++..+++++++++..|+-
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556666666777778888888888864
No 191
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=29.78 E-value=57 Score=17.55 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 044913 308 IIVVVVALSAIGILAFT 324 (395)
Q Consensus 308 vv~~v~~~~~~~~~~~~ 324 (395)
|+++.+++..+..+.++
T Consensus 8 viaglvalltflafgfw 24 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34333333333333333
No 192
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=24.14 E-value=24 Score=19.67 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q 044913 313 VALSAIGILAFTQYR 327 (395)
Q Consensus 313 ~~~~~~~~~~~~~~r 327 (395)
+...+++++.+|...
T Consensus 12 isGcivalF~hWL~~ 26 (30)
T 4b19_A 12 ISGCAIAFFSYWLSR 26 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444455554333
No 193
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=23.79 E-value=76 Score=19.66 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 044913 311 VVVALSAIGILAFTQYRR 328 (395)
Q Consensus 311 ~v~~~~~~~~~~~~~~rr 328 (395)
.+++.+.+++.+|.|.||
T Consensus 27 ~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 27 GAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444445555555444
No 194
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=23.33 E-value=1.1e+02 Score=17.87 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=10.0
Q ss_pred ehhHHHHHHHHHHHHHHHHH
Q 044913 306 AGIIVVVVALSAIGILAFTQ 325 (395)
Q Consensus 306 ~~vv~~v~~~~~~~~~~~~~ 325 (395)
.++|.+.+.+.++++++..+
T Consensus 7 ~GIVlGlipvtlaGLfv~Ay 26 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLFVTAY 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHH
Confidence 45555555555555444433
No 195
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=22.85 E-value=18 Score=32.79 Aligned_cols=20 Identities=30% Similarity=0.735 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 044913 310 VVVVALSAIGILAFTQYRRR 329 (395)
Q Consensus 310 ~~v~~~~~~~~~~~~~~rrr 329 (395)
+++++++++++++.+|++||
T Consensus 289 ~vi~~l~ll~~~~~~~~~~~ 308 (315)
T 1cd1_A 289 IVLIMLVVVGAVVYYIWRRR 308 (315)
T ss_dssp --------------------
T ss_pred hHHHHHHHHHHHHHhheehh
Confidence 34433333333323344333
No 196
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=22.61 E-value=18 Score=37.95 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH
Q 044913 308 IIVVVVALSAIGIL 321 (395)
Q Consensus 308 vv~~v~~~~~~~~~ 321 (395)
++++++++++++++
T Consensus 710 il~~~~~ll~~~ll 723 (880)
T 1q55_A 710 ILGSVLALLILFLL 723 (880)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
Done!