Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>044915
MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGRG
LCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGFPG
GEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFYM
YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKKQE

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044915
        (238 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2138091 - symbol:NdhS "AT4G23890" species:3702...   736  7.5e-73   1


>TAIR|locus:2138091 [details] [associations]
            symbol:NdhS "AT4G23890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0009637 "response to blue light" evidence=RCA] [GO:0010155
            "regulation of proton transport" evidence=RCA] [GO:0030003
            "cellular cation homeostasis" evidence=RCA] [GO:0046777 "protein
            autophosphorylation" evidence=RCA] [GO:0070838 "divalent metal ion
            transport" evidence=RCA] EMBL:CP002687 GO:GO:0009535 EMBL:AL078468
            EMBL:AL161560 UniGene:At.48899 UniGene:At.75570 EMBL:AY087028
            EMBL:AY128349 EMBL:BT000002 IPI:IPI00535729 PIR:T08908
            RefSeq:NP_194120.1 ProteinModelPortal:Q9T0A4 SMR:Q9T0A4
            STRING:Q9T0A4 PRIDE:Q9T0A4 ProMEX:Q9T0A4 EnsemblPlants:AT4G23890.1
            GeneID:828489 KEGG:ath:AT4G23890 TAIR:At4g23890
            HOGENOM:HOG000242189 InParanoid:Q9T0A4 OMA:MYCGIVQ PhylomeDB:Q9T0A4
            ProtClustDB:CLSN2686013 Genevestigator:Q9T0A4 InterPro:IPR021659
            Pfam:PF11623 Uniprot:Q9T0A4
        Length = 250

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 146/241 (60%), Positives = 177/241 (73%)

Query:     3 SSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTV--LKPCAKFDLFEIMGGRG 60
             SSI + T++ P+ +S FLGQ        +     PKQ S +  +K   KF+L+E+MGGRG
Sbjct:     4 SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQVKAMGKFNLWEVMGGRG 63

Query:    61 LCNGEKGIELELKRNVT-EQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGFP 119
             LCNGEKGIE EL+RN+  EQE+  A+  E    S     +  VPED FEKEMMGLTGGFP
Sbjct:    64 LCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGFP 123

Query:   120 GGEKGLQQFIEQNPPPKKPVT-ADSG-DVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNP 177
             GGEKGL+ FIE+NPPP  P   A  G D  A+ T +KPK P+ PLLMPGM AIVKN N+P
Sbjct:   124 GGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNSP 183

Query:   178 FYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKKQ 237
             ++MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPG+NPKS +LE +I++ 
Sbjct:   184 YHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIEQM 243

Query:   238 E 238
             +
Sbjct:   244 Q 244


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      238       238   0.00091  113 3  11 23  0.50    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.04u 0.08s 28.12t   Elapsed:  00:00:02
  Total cpu time:  28.04u 0.08s 28.12t   Elapsed:  00:00:02
  Start:  Fri May 10 16:43:19 2013   End:  Fri May 10 16:43:21 2013

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