BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044915
         (238 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JZ2|A Chain A, Solution Nmr Structure Of Ssl0352 Protein From
           Synechocystis Sp. Pcc 6803. Northeast Structural
           Genomics Consortium Target Sgr42
 pdb|3C4S|A Chain A, Crystal Structure Of The Ssl0352 Protein From
           Synechocystis Sp. Northeast Structural Genomics
           Consortium Target Sgr42
 pdb|3C4S|B Chain B, Crystal Structure Of The Ssl0352 Protein From
           Synechocystis Sp. Northeast Structural Genomics
           Consortium Target Sgr42
          Length = 66

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELE 214
           ++ PG    V N ++ +Y + G+VQR++DGKA VLFE GNWD+L+TFRL ELE
Sbjct: 1   MIFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELE 53


>pdb|1RM6|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
           Aromatica
 pdb|1RM6|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
           Aromatica
 pdb|1SB3|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
           Aromatica
 pdb|1SB3|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
           Aromatica
          Length = 161

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 82  QVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGF--PGGEKGLQQFIEQNPPPKK 137
           QVA K+ E+  S A   TLS  + AF  E +G   GF  PG     +  + +NP P +
Sbjct: 67  QVAGKKVETVESLATQGTLSKLQAAFH-EKLGTQCGFCTPGMIMASEALLRKNPSPSR 123


>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To
           5'-Adenylated, Nicked Dna
          Length = 688

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 40  PSTVLK-PCAKFDLFEIM-GGRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMP 97
           PS V +  CA   L  I    RGL + +KGI L   R +  +E    DK+ E + ++A  
Sbjct: 607 PSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVRE----DKQPEQATTSAQV 662

Query: 98  STL 100
           + L
Sbjct: 663 ACL 665


>pdb|3IGF|A Chain A, Crystal Structure Of The All4481 Protein From Nostoc Sp.
           Pcc 7120, Northeast Structural Genomics Consortium
           Target Nsr300
 pdb|3IGF|B Chain B, Crystal Structure Of The All4481 Protein From Nostoc Sp.
           Pcc 7120, Northeast Structural Genomics Consortium
           Target Nsr300
          Length = 374

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 14/115 (12%)

Query: 31  KPYLATPKQPSTVLKPCAKFDLFEIMGGRGLCNGEKGIELELKRNVTEQESQVADKEEES 90
           K  LA PK+ +  L   A  D  E++  R L    + I L +   +     QV+ + E  
Sbjct: 206 KEALADPKRVAAFLVTTA--DPLEVVSVRYLWGSAQQIGLTIGGVI-----QVSSQTEGD 258

Query: 91  SASTAMPSTLSVPEDAFEKEMMGLTGGFPGGEKGLQQFIEQNPPPKKPVTADSGD 145
            ++   P +++V  D  + +   L    P        F+EQ     KP+T D+ +
Sbjct: 259 LSAEFTPLSVTVVPDVTKGDWQPLIDALPN-------FVEQAEQAPKPITIDTHN 306


>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From
           The Hyperthermophilic Bacterium Thermotoga Maritima
          Length = 398

 Score = 26.9 bits (58), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 9   TLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFE-----IMGGRGLCN 63
           ++ G L++      ++V+Y P+KPY+          K     +L E     ++GG  +  
Sbjct: 164 SVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFT 223

Query: 64  GEKGIELELKRNVTEQE-----SQVADKEEESSASTAMPSTLSVP---EDAFEKEMMGLT 115
             K +  E+  +  E++      ++ +K +E      +P    +    E   EK+++ + 
Sbjct: 224 FLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRID 283

Query: 116 GGFPGGEKGLQ 126
            G P G  GL 
Sbjct: 284 DGIPEGWMGLD 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,772,264
Number of Sequences: 62578
Number of extensions: 335517
Number of successful extensions: 579
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 11
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)