BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044915
         (238 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9GZN6|S6A16_HUMAN Orphan sodium- and chloride-dependent neurotransmitter transporter
           NTT5 OS=Homo sapiens GN=SLC6A16 PE=2 SV=1
          Length = 736

 Score = 34.7 bits (78), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 137 KPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGI 184
           KP+T  S D        +P PP   LLM  +FAIV  P   +++YC I
Sbjct: 636 KPITYMSWDSSTSKEVLRPYPPWALLLMITLFAIVILPIPAYFVYCRI 683


>sp|Q3U3D7|T131L_MOUSE Transmembrane protein 131-like OS=Mus musculus GN=Kiaa0922 PE=2 SV=1
          Length = 1597

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 16/88 (18%)

Query: 105  DAFEKEMMGLTGGFPGGEKGLQQFIEQ------NPPPKKPVTADSGDVV----ALTTTRK 154
            +AF +E M  T GFP   K    FI        N P   P       +V     LT+TR 
Sbjct: 1456 NAFPEENMNYTNGFPCSSKVQTDFIGHSTPSTWNTPASMPAAWGHASLVNSPSYLTSTRS 1515

Query: 155  PKPPEWPLLMPGMFAIVKNPNNPFYMYC 182
              P      M G+F  +  P +  Y  C
Sbjct: 1516 LSP------MSGLFGSIWAPQSEVYETC 1537


>sp|Q88VI8|Y2061_LACPL UPF0154 protein lp_2061 OS=Lactobacillus plantarum (strain ATCC
           BAA-793 / NCIMB 8826 / WCFS1) GN=lp_2061 PE=3 SV=1
          Length = 78

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 111 MMGLTGGFPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAI 170
           ++GLTGGF G    +Q +++QNP    P++ +    + +   ++P   +   ++  M A 
Sbjct: 17  LVGLTGGFFGARHYMQNYLKQNP----PISEEMLRSMMMQMGQRPSEKKLHQMLNSMKAA 72

Query: 171 VKNPN 175
            KN N
Sbjct: 73  SKNDN 77


>sp|B3PRB0|HISZ_RHIE6 ATP phosphoribosyltransferase regulatory subunit OS=Rhizobium etli
           (strain CIAT 652) GN=hisZ PE=3 SV=1
          Length = 373

 Score = 31.6 bits (70), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 177 PFYMYCGIVQRIT-DGKAGVLFEGGNWDRLITF 208
           P   Y G+V  +T +G + VL  GG +DRL+TF
Sbjct: 315 PLDYYTGLVFEVTAEGSSAVLAGGGRFDRLLTF 347


>sp|Q2KC03|HISZ_RHIEC ATP phosphoribosyltransferase regulatory subunit OS=Rhizobium etli
           (strain CFN 42 / ATCC 51251) GN=hisZ PE=3 SV=1
          Length = 373

 Score = 31.6 bits (70), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 177 PFYMYCGIVQRIT-DGKAGVLFEGGNWDRLITF 208
           P   Y G+V  +T +G + VL  GG +DRL+TF
Sbjct: 315 PLDYYTGLVFEVTVEGSSAVLAGGGRFDRLLTF 347


>sp|B5ZRD1|HISZ_RHILW ATP phosphoribosyltransferase regulatory subunit OS=Rhizobium
           leguminosarum bv. trifolii (strain WSM2304) GN=hisZ PE=3
           SV=1
          Length = 373

 Score = 31.2 bits (69), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 177 PFYMYCGIVQRIT-DGKAGVLFEGGNWDRLITF 208
           P   Y G+V  +T +G A VL  GG +D+L+TF
Sbjct: 315 PLDYYTGLVFEVTVEGSAAVLAGGGRFDKLLTF 347


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,882,045
Number of Sequences: 539616
Number of extensions: 4488744
Number of successful extensions: 9649
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9642
Number of HSP's gapped (non-prelim): 25
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)