Query 044915
Match_columns 238
No_of_seqs 60 out of 62
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 08:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11623 DUF3252: Protein of u 100.0 2.9E-38 6.4E-43 226.1 5.9 53 162-214 1-53 (53)
2 TIGR00405 L26e_arch ribosomal 92.9 0.18 3.9E-06 40.5 4.4 56 161-218 85-142 (145)
3 TIGR00922 nusG transcription t 91.8 0.48 1E-05 38.6 5.8 52 161-214 118-171 (172)
4 PRK05609 nusG transcription an 91.1 0.61 1.3E-05 38.1 5.7 54 161-216 125-180 (181)
5 PF12073 DUF3553: Protein of u 90.0 0.59 1.3E-05 34.1 4.2 34 163-199 1-34 (52)
6 smart00561 MBT Present in Dros 88.8 1.4 3.1E-05 34.3 5.9 45 155-199 20-64 (96)
7 smart00333 TUDOR Tudor domain. 86.2 2.9 6.3E-05 28.0 5.5 47 162-213 2-50 (57)
8 TIGR01955 RfaH transcriptional 85.9 2.2 4.8E-05 34.1 5.6 51 162-214 108-159 (159)
9 PRK08559 nusG transcription an 85.1 2 4.4E-05 35.4 5.1 54 163-218 95-150 (153)
10 PF09465 LBR_tudor: Lamin-B re 84.5 2.8 6E-05 30.9 5.0 44 165-212 8-53 (55)
11 PLN00045 photosystem I reactio 83.7 4.2 9.1E-05 33.3 6.2 57 160-216 37-100 (101)
12 PRK09014 rfaH transcriptional 78.4 4.2 9E-05 33.0 4.6 51 163-215 110-161 (162)
13 CHL00125 psaE photosystem I su 78.3 3.7 8.1E-05 31.3 3.9 57 162-218 1-63 (64)
14 smart00743 Agenet Tudor-like d 77.6 9.9 0.00021 26.1 5.7 52 163-215 3-55 (61)
15 TIGR01956 NusG_myco NusG famil 74.7 8.6 0.00019 35.6 6.1 59 154-214 197-257 (258)
16 PF00467 KOW: KOW motif; Inte 72.1 8.4 0.00018 24.3 3.8 32 165-198 1-32 (32)
17 cd04508 TUDOR Tudor domains ar 71.4 12 0.00026 24.2 4.6 37 166-204 1-40 (48)
18 smart00739 KOW KOW (Kyprides, 67.8 9 0.0002 22.3 3.1 26 163-190 2-27 (28)
19 TIGR00998 8a0101 efflux pump m 65.9 9.7 0.00021 33.3 4.3 47 160-206 252-305 (334)
20 PF11213 DUF3006: Protein of u 63.3 11 0.00024 27.7 3.5 29 183-213 2-30 (71)
21 PF03672 UPF0154: Uncharacteri 63.2 1.9 4.1E-05 32.5 -0.5 25 111-135 8-32 (64)
22 cd05698 S1_Rrp5_repeat_hs6_sc5 61.8 13 0.00028 25.5 3.5 31 181-214 4-34 (70)
23 PRK02749 photosystem I reactio 60.0 16 0.00034 28.4 4.0 57 161-217 1-70 (71)
24 PRK01844 hypothetical protein; 56.2 2.9 6.4E-05 32.3 -0.6 26 111-136 15-40 (72)
25 PF02427 PSI_PsaE: Photosystem 55.1 27 0.00058 26.5 4.4 54 164-217 2-61 (61)
26 PF11430 EGL-1: Programmed cel 54.8 6.2 0.00013 24.4 0.8 10 104-113 11-20 (21)
27 PF02820 MBT: mbt repeat; Int 52.2 24 0.00052 25.6 3.7 33 167-199 1-33 (73)
28 TIGR02768 TraA_Ti Ti-type conj 51.7 26 0.00057 35.8 5.1 53 162-217 607-662 (744)
29 PRK13826 Dtr system oriT relax 51.2 27 0.00059 38.0 5.3 56 162-217 633-691 (1102)
30 PF15057 DUF4537: Domain of un 50.8 34 0.00075 27.7 4.7 42 160-201 53-100 (124)
31 PRK00523 hypothetical protein; 50.1 4.2 9E-05 31.5 -0.6 26 111-136 16-41 (72)
32 PF15057 DUF4537: Domain of un 48.2 36 0.00078 27.5 4.5 34 166-200 1-35 (124)
33 cd04717 BAH_polybromo BAH, or 47.5 17 0.00038 28.3 2.5 41 162-202 3-43 (121)
34 COG0250 NusG Transcription ant 47.2 41 0.00089 29.0 4.9 35 156-192 117-151 (178)
35 KOG1708 Mitochondrial/chloropl 47.0 43 0.00093 30.9 5.2 40 162-203 72-111 (236)
36 PRK12784 hypothetical protein; 46.9 21 0.00045 28.5 2.8 35 175-212 6-40 (84)
37 PRK15136 multidrug efflux syst 46.2 27 0.00058 32.5 3.9 47 160-206 263-316 (390)
38 PRK09618 flgD flagellar basal 45.6 37 0.00081 28.9 4.3 37 164-202 90-128 (142)
39 COG1047 SlpA FKBP-type peptidy 44.1 56 0.0012 28.7 5.3 51 163-216 91-141 (174)
40 PRK00004 rplX 50S ribosomal pr 41.1 48 0.001 26.4 4.1 40 162-203 4-43 (105)
41 PF11302 DUF3104: Protein of u 38.2 48 0.001 25.9 3.6 28 162-191 5-39 (75)
42 PRK10737 FKBP-type peptidyl-pr 35.6 1.1E+02 0.0024 27.0 5.8 53 163-218 90-142 (196)
43 COG1566 EmrA Multidrug resista 35.4 45 0.00098 31.8 3.7 45 159-206 255-309 (352)
44 PF05257 CHAP: CHAP domain; I 35.2 68 0.0015 24.6 4.0 37 164-202 64-101 (124)
45 cd04714 BAH_BAHCC1 BAH, or Bro 34.0 40 0.00086 26.8 2.7 31 162-192 3-33 (121)
46 CHL00141 rpl24 ribosomal prote 33.8 75 0.0016 24.5 4.0 39 162-202 8-46 (83)
47 TIGR02754 sod_Ni_protease nick 33.4 92 0.002 22.6 4.3 29 165-193 32-60 (90)
48 TIGR01080 rplX_A_E ribosomal p 32.7 77 0.0017 26.1 4.1 41 162-204 41-81 (114)
49 PRK13889 conjugal transfer rel 32.5 72 0.0016 34.4 5.0 53 162-217 600-655 (988)
50 smart00318 SNc Staphylococcal 31.0 1.3E+02 0.0028 23.2 5.0 39 180-220 2-40 (138)
51 cd04370 BAH BAH, or Bromo Adja 29.2 53 0.0012 24.1 2.5 31 163-193 4-36 (123)
52 PRK14644 hypothetical protein; 28.7 1.6E+02 0.0035 24.5 5.5 50 164-213 83-134 (136)
53 cd05708 S1_Rrp5_repeat_sc12 S1 28.5 96 0.0021 21.2 3.5 31 181-213 6-36 (77)
54 TIGR00376 DNA helicase, putati 27.8 1.3E+02 0.0028 30.5 5.6 38 162-199 57-94 (637)
55 PRK12281 rplX 50S ribosomal pr 27.6 1.2E+02 0.0025 23.1 4.1 39 162-202 6-44 (76)
56 PF09871 DUF2098: Uncharacteri 27.2 86 0.0019 24.9 3.4 56 163-228 3-61 (91)
57 PRK10875 recD exonuclease V su 26.7 1.2E+02 0.0025 30.9 5.1 56 162-218 480-538 (615)
58 PF00659 POLO_box: POLO box du 26.6 68 0.0015 22.7 2.6 20 182-201 5-24 (68)
59 cd08891 SRPBCC_CalC Ligand-bin 26.1 2.4E+02 0.0053 21.9 5.8 50 164-214 46-103 (149)
60 cd05697 S1_Rrp5_repeat_hs5 S1_ 25.8 85 0.0018 21.6 2.9 20 181-200 4-23 (69)
61 PF08863 YolD: YolD-like prote 25.7 1.7E+02 0.0037 21.2 4.6 43 169-213 47-89 (92)
62 TIGR00113 queA S-adenosylmethi 25.0 81 0.0017 30.4 3.4 45 161-207 47-95 (344)
63 cd04461 S1_Rrp5_repeat_hs8_sc7 24.6 1E+02 0.0022 22.1 3.2 31 181-214 18-48 (83)
64 PRK06792 flgD flagellar basal 24.5 2.5E+02 0.0054 25.3 6.2 55 164-226 116-174 (190)
65 cd05707 S1_Rrp5_repeat_sc11 S1 24.3 1.2E+02 0.0026 20.7 3.4 30 181-213 4-33 (68)
66 cd00164 S1_like S1_like: Ribos 23.9 88 0.0019 19.8 2.5 20 181-200 1-20 (65)
67 PRK14449 acylphosphatase; Prov 23.8 74 0.0016 24.2 2.4 22 179-200 29-50 (90)
68 TIGR03794 NHPM_micro_HlyD NHPM 23.8 84 0.0018 29.2 3.3 32 160-191 305-339 (421)
69 KOG3766 Polycomb group protein 23.7 1.7E+02 0.0038 29.2 5.5 49 153-201 80-128 (478)
70 PRK14445 acylphosphatase; Prov 23.6 74 0.0016 24.3 2.4 23 179-201 30-52 (91)
71 KOG4715 SWI/SNF-related matrix 23.4 79 0.0017 31.1 3.1 60 114-175 20-89 (410)
72 TIGR01079 rplX_bact ribosomal 22.6 1.4E+02 0.003 23.9 3.9 39 162-202 3-41 (104)
73 PF11515 Cul7: Mouse developme 22.6 61 0.0013 25.5 1.8 30 163-192 18-48 (78)
74 cd05685 S1_Tex S1_Tex: The C-t 22.5 1.3E+02 0.0029 19.6 3.2 30 181-213 4-33 (68)
75 PRK00147 queA S-adenosylmethio 22.4 1.3E+02 0.0029 28.9 4.3 45 162-207 49-97 (342)
76 PF00708 Acylphosphatase: Acyl 22.1 83 0.0018 23.4 2.4 23 179-201 30-52 (91)
77 PF13550 Phage-tail_3: Putativ 21.5 1.2E+02 0.0027 23.4 3.3 31 157-190 134-164 (164)
78 PRK00092 ribosome maturation p 21.5 2.7E+02 0.0059 23.0 5.5 51 163-215 95-147 (154)
79 PRK14429 acylphosphatase; Prov 21.2 90 0.0019 23.8 2.5 24 179-202 28-51 (90)
80 smart00439 BAH Bromo adjacent 20.4 1.2E+02 0.0025 22.5 2.9 31 163-193 2-32 (120)
81 PRK14430 acylphosphatase; Prov 20.3 96 0.0021 23.9 2.5 22 179-200 30-51 (92)
No 1
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=100.00 E-value=2.9e-38 Score=226.06 Aligned_cols=53 Identities=64% Similarity=1.170 Sum_probs=45.6
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchh
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe 214 (238)
||||||+|+|+||+|+||+|+|+||||||||||||||||||||||||+|+|||
T Consensus 1 ~ilPG~~V~V~n~~~~Y~~y~G~VQRvsdgkaaVLFEGGnWdKlvTf~l~eLe 53 (53)
T PF11623_consen 1 MILPGSTVRVKNPNDIYYGYEGFVQRVSDGKAAVLFEGGNWDKLVTFRLSELE 53 (53)
T ss_dssp ---TT-EEEE--TTSTTTT-EEEEEEEETTEEEEEEEETTEEEEEEEEGGGEE
T ss_pred CccCCCEEEEeCCCCccchheEEEEEeeCCeEEEEecCCCceEEEEEEhhhCC
Confidence 79999999999999999999999999999999999999999999999999997
No 2
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=92.85 E-value=0.18 Score=40.46 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=48.6
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCccee--EEeeccchhhccc
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRL--ITFRLDELERREK 218 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKl--vtf~l~eLe~~~~ 218 (238)
.++.+|..|+|++ -+|-+|+|.|.++...|.-|+++-=+-... ||+..++|+.+++
T Consensus 85 ~~~~~Gd~V~I~~--GPf~G~~g~v~~~d~~k~~v~v~l~~~~~~~~v~v~~~~l~~~~~ 142 (145)
T TIGR00405 85 ESIKKGDIVEIIS--GPFKGERAKVIRVDESKEEVTLELIEAAVPIPVTVKGDQVRIIQK 142 (145)
T ss_pred cccCCCCEEEEee--cCCCCCeEEEEEEcCCCCEEEEEEEEcCccceEEEeeeEEEEecc
Confidence 4588999999998 699999999999987777888887778888 9999999988764
No 3
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=91.79 E-value=0.48 Score=38.60 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=44.5
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCCcceeEEeeccchh
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgnWdKlvtf~l~eLe 214 (238)
..+.+|+.|+|++ -++-+|+|.|.++. +++|.|+++-=+=...|++.+++|+
T Consensus 118 ~~~~~G~~V~I~~--Gpf~G~~g~v~~~~~~~~r~~V~v~~~g~~~~v~v~~~~l~ 171 (172)
T TIGR00922 118 IDFEVGEQVRVND--GPFANFTGTVEEVDYEKSKLKVSVSIFGRETPVELEFSQVE 171 (172)
T ss_pred cCCCCCCEEEEee--cCCCCcEEEEEEEcCCCCEEEEEEEECCCceEEEEcHHHee
Confidence 4477999999994 68999999999996 5699999998777788999888875
No 4
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=91.06 E-value=0.61 Score=38.09 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=45.4
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCCcceeEEeeccchhhc
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGNWDRLITFRLDELERR 216 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgnWdKlvtf~l~eLe~~ 216 (238)
..+.+|..|+|+ +-++-+|+|.|.++. .++|.|+++-=+=...|.+.+++|+..
T Consensus 125 ~~~~~Gd~VrI~--~GPf~G~~g~v~~i~~~~~r~~v~l~~~G~~~~v~l~~~~l~~~ 180 (181)
T PRK05609 125 VDFEVGEMVRVI--DGPFADFNGTVEEVDYEKSKLKVLVSIFGRETPVELEFSQVEKI 180 (181)
T ss_pred cCCCCCCEEEEe--ccCCCCCEEEEEEEeCCCCEEEEEEEECCCceEEEEchHHEEEc
Confidence 457899999999 468999999999995 458999999877678888888888653
No 5
>PF12073 DUF3553: Protein of unknown function (DUF3553); InterPro: IPR021938 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.
Probab=89.99 E-value=0.59 Score=34.14 Aligned_cols=34 Identities=41% Similarity=0.673 Sum_probs=29.3
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
|-|||. |.+|+.+=.+ .|+||-..+||+-|-||.
T Consensus 1 l~pG~~--VrHP~~pdWG-~GqVqS~i~~rvTVnF~~ 34 (52)
T PF12073_consen 1 LEPGML--VRHPDHPDWG-IGQVQSNIGGRVTVNFEH 34 (52)
T ss_pred CCCCCE--EeCCCCCCCc-ceEEEEecCCeEEEeecc
Confidence 358886 4688888888 599999999999999998
No 6
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=88.83 E-value=1.4 Score=34.27 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=40.4
Q ss_pred CCCCCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 155 PKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 155 p~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
+..+....+-+||-+-+.|+.|++.-....|.+|.++++-|-|+|
T Consensus 20 ~~~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~~l~v~~dg 64 (96)
T smart00561 20 PVDSPPNGFKVGMKLEAVDPRNPSLICVATVVEVKGYRLLLHFDG 64 (96)
T ss_pred CCCCccCcccCCCEEEEECCCCCceEEEEEEEEEECCEEEEEEcc
Confidence 444556668999999999999999999999999999999999997
No 7
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=86.20 E-value=2.9 Score=27.95 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=36.9
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeC-CCcceeEEeeccch
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEG-GNWDRLITFRLDEL 213 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeG-gnWdKlvtf~l~eL 213 (238)
.+-+|..|.+...++.| |.+.|+.|.+ +.+-|.|.+ ||-. ++..++|
T Consensus 2 ~~~~G~~~~a~~~d~~w--yra~I~~~~~~~~~~V~f~D~G~~~---~v~~~~l 50 (57)
T smart00333 2 TFKVGDKVAARWEDGEW--YRARIIKVDGEQLYEVFFIDYGNEE---VVPPSDL 50 (57)
T ss_pred CCCCCCEEEEEeCCCCE--EEEEEEEECCCCEEEEEEECCCccE---EEeHHHe
Confidence 35689999999844555 5789999999 999999999 8875 4455555
No 8
>TIGR01955 RfaH transcriptional activator RfaH. This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.
Probab=85.86 E-value=2.2 Score=34.13 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=39.8
Q ss_pred cccCCceEEEeCCCCcccceeceEEEee-CCeeEEEeeCCCcceeEEeeccchh
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRIT-DGKAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvt-dgkaaVLFeGgnWdKlvtf~l~eLe 214 (238)
.+.+|..|+|++ -++-+|+|.|.++. ..+|.|+++-=+=.-.|++..++||
T Consensus 108 ~~~~G~~V~V~~--GPf~g~~g~v~~~~~~~r~~v~l~~~gr~~~v~~~~~~~~ 159 (159)
T TIGR01955 108 LPYKGDKVRITD--GAFAGFEAIFLEPDGEKRSMLLLNMIGKQIKVSVPNTSVE 159 (159)
T ss_pred CCCCCCEEEEec--cCCCCcEEEEEEECCCceEEEEEhhhCCceEEEecHHHcC
Confidence 478999999997 47999999999996 4468888876555566777766664
No 9
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=85.10 E-value=2 Score=35.40 Aligned_cols=54 Identities=22% Similarity=0.151 Sum_probs=43.9
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCccee--EEeeccchhhccc
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRL--ITFRLDELERREK 218 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKl--vtf~l~eLe~~~~ 218 (238)
+.+|..|+|++ -+|-+|.|+|+.+...+--|+++-=+=.-. ||+.+++|..+++
T Consensus 95 ~~~G~~V~I~~--Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~~~~~~ 150 (153)
T PRK08559 95 IKEGDIVELIA--GPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQVRVVKK 150 (153)
T ss_pred CCCCCEEEEec--cCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEEEEecc
Confidence 88999999998 589999999999975555577766555556 9999999977764
No 10
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=84.46 E-value=2.8 Score=30.94 Aligned_cols=44 Identities=25% Similarity=0.486 Sum_probs=32.9
Q ss_pred CCceEEEeCCCCcccceeceEEE--eeCCeeEEEeeCCCcceeEEeeccc
Q 044915 165 PGMFAIVKNPNNPFYMYCGIVQR--ITDGKAGVLFEGGNWDRLITFRLDE 212 (238)
Q Consensus 165 PG~~v~V~n~~~~y~~y~G~VQR--vtdgkaaVLFeGgnWdKlvtf~l~e 212 (238)
-|..|.|.=|.|.-| |+|.|++ +++.+..|+|+.|.= ++++.+|
T Consensus 8 ~Ge~V~~rWP~s~lY-Ye~kV~~~d~~~~~y~V~Y~DGte---l~lke~d 53 (55)
T PF09465_consen 8 IGEVVMVRWPGSSLY-YEGKVLSYDSKSDRYTVLYEDGTE---LELKEND 53 (55)
T ss_dssp SS-EEEEE-TTTS-E-EEEEEEEEETTTTEEEEEETTS-E---EEEECCC
T ss_pred CCCEEEEECCCCCcE-EEEEEEEecccCceEEEEEcCCCE---EEecccc
Confidence 488999999998766 7999999 889999999999963 4444444
No 11
>PLN00045 photosystem I reaction center subunit IV; Provisional
Probab=83.74 E-value=4.2 Score=33.28 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=46.7
Q ss_pred CCcccCCceEEEeCCCCcccceeceEEEeeCC-----eeEEEeeCCCcceeEE--eeccchhhc
Q 044915 160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDG-----KAGVLFEGGNWDRLIT--FRLDELERR 216 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdg-----kaaVLFeGgnWdKlvt--f~l~eLe~~ 216 (238)
+-+|--|+.|+|.-+.+-+|-=.|.|--|... -+-|.|+-=|+.-+-| |-++||+.+
T Consensus 37 ~ig~~RGskVrIlR~ESYWyn~vGtVvsVDq~~girYPVvVRF~kvNY~gvnTNnfa~~El~~v 100 (101)
T PLN00045 37 PIGPKRGSKVKILRPESYWFNDVGKVVAVDQDPGVRYPVVVRFEKVNYAGVSTNNYALDEIEEV 100 (101)
T ss_pred CcccCCCCEEEEccccceeecCcceEEEEeCCCCcccceEEEeeeeeccccccccccHhhhhcc
Confidence 44677899999999999999999999988766 2678899888876666 677888765
No 12
>PRK09014 rfaH transcriptional activator RfaH; Provisional
Probab=78.39 E-value=4.2 Score=33.05 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=39.2
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeCCCcceeEEeeccchhh
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEGGNWDRLITFRLDELER 215 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeGgnWdKlvtf~l~eLe~ 215 (238)
+.+|..|+|++- ++-+|+|.|.++.+ .++.|+++-=+=.-.|++..++|+.
T Consensus 110 ~~~G~~V~I~~G--p~~g~eg~v~~~~~~~r~~v~v~~~gr~~~v~v~~~~~~~ 161 (162)
T PRK09014 110 PKPGDKVIITEG--AFEGLQAIYTEPDGEARSILLLNLLNKQVKHSVDNTQFRK 161 (162)
T ss_pred CCCCCEEEEecC--CCCCcEEEEEEeCCCeEEEEeehhhCCcEEEEECHHHeec
Confidence 679999999974 69999999999954 4777888775555566777666653
No 13
>CHL00125 psaE photosystem I subunit IV; Reviewed
Probab=78.26 E-value=3.7 Score=31.25 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=47.0
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCe----eEEEeeCCCcceeEE--eeccchhhccc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGK----AGVLFEGGNWDRLIT--FRLDELERREK 218 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgk----aaVLFeGgnWdKlvt--f~l~eLe~~~~ 218 (238)
||--|+.|+|.-|.+-+|-=.|.|--|.... +-|.|+-=|..-+-| |-++||+.+++
T Consensus 1 mi~rGskVrIlR~ESYWyn~vGtV~svd~~gi~YPV~VRF~kvNY~g~nTNnfa~~El~~v~~ 63 (64)
T CHL00125 1 MVKRGSKVRILRKESYWYNEIGTVATVDQSGIRYPVLVRFEKVNYSGTNTNNFSLDELVEVEE 63 (64)
T ss_pred CcccCCEEEEccccceeecCcceEEEEcCCCCCccEEEEEeeeeccccccccccHHHHhhhcc
Confidence 6778999999999999999999998886653 568898888876665 77888887754
No 14
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=77.63 E-value=9.9 Score=26.11 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=41.8
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeCCCcceeEEeeccchhh
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEGGNWDRLITFRLDELER 215 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeGgnWdKlvtf~l~eLe~ 215 (238)
+..|+.|-|.-.. ----|.|.|.++.+ ++..|.|.+.......+|..++|-.
T Consensus 3 ~~~G~~Ve~~~~~-~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp 55 (61)
T smart00743 3 FKKGDRVEVFSKE-EDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRP 55 (61)
T ss_pred cCCCCEEEEEECC-CCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHccc
Confidence 5678999888543 23346899999999 8899999997788899999999843
No 15
>TIGR01956 NusG_myco NusG family protein. This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Probab=74.71 E-value=8.6 Score=35.57 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=45.2
Q ss_pred CCCCCCCCcccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCCcceeEEeeccchh
Q 044915 154 KPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 154 kp~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgnWdKlvtf~l~eLe 214 (238)
.+++.....+.+|..|+|++ -+|-+|+|.|..+. .+||.|+++--.=.-.|++.+++|+
T Consensus 197 ~~~~~~~~~f~vGd~VrI~d--GPF~GfeG~I~eid~~k~Rv~VlV~IfGR~TpVeL~~~qVe 257 (258)
T TIGR01956 197 FQLVDNLSKFRVGNFVKIVD--GPFKGIVGKIKKIDQEKKKAIVEVEILGKSVDVDLNFKHLK 257 (258)
T ss_pred ccccccccCCCCCCEEEEEe--cCCCCcEEEEEEEeCCCCEEEEEEEecCCcEEEEEchHHEE
Confidence 33433344578999999996 48999999999996 7999999988665666777666653
No 16
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=72.07 E-value=8.4 Score=24.29 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=26.9
Q ss_pred CCceEEEeCCCCcccceeceEEEeeCCeeEEEee
Q 044915 165 PGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFE 198 (238)
Q Consensus 165 PG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFe 198 (238)
+|..|+|++ -+|-++.|.|.+|.+.++-|+.|
T Consensus 1 ~Gd~V~V~~--G~~~G~~G~I~~i~~~~~~V~ve 32 (32)
T PF00467_consen 1 VGDTVKVIS--GPFKGKIGKIVEIDRSKVRVTVE 32 (32)
T ss_dssp TTSEEEESS--STTTTEEEEEEEEETTTTEEEES
T ss_pred CCCEEEEeE--cCCCCceEEEEEEECCCCEEEEC
Confidence 688999986 57899999999999998777653
No 17
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=71.36 E-value=12 Score=24.20 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=28.7
Q ss_pred CceEEEeCCC-CcccceeceEEEee-CCeeEEEeeC-CCcce
Q 044915 166 GMFAIVKNPN-NPFYMYCGIVQRIT-DGKAGVLFEG-GNWDR 204 (238)
Q Consensus 166 G~~v~V~n~~-~~y~~y~G~VQRvt-dgkaaVLFeG-gnWdK 204 (238)
|+.+.+...+ +.| |.+.|..|. ++++-|.|.. ||=..
T Consensus 1 G~~c~a~~~~d~~w--yra~V~~~~~~~~~~V~f~DyG~~~~ 40 (48)
T cd04508 1 GDLCLAKYSDDGKW--YRAKITSILSDGKVEVFFVDYGNTEV 40 (48)
T ss_pred CCEEEEEECCCCeE--EEEEEEEECCCCcEEEEEEcCCCcEE
Confidence 5677777665 444 679999999 8999999999 88543
No 18
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=67.76 E-value=9 Score=22.27 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=21.8
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeC
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITD 190 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtd 190 (238)
+.+|..|+|++ -.|-+++|.|.+|.+
T Consensus 2 ~~~G~~V~I~~--G~~~g~~g~i~~i~~ 27 (28)
T smart00739 2 FEVGDTVRVIA--GPFKGKVGKVLEVDG 27 (28)
T ss_pred CCCCCEEEEeE--CCCCCcEEEEEEEcC
Confidence 56899999998 458899999998864
No 19
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=65.92 E-value=9.7 Score=33.34 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCcccCCceEEEeCCCCc-ccceeceEEEeeCCeeEE------EeeCCCcceeE
Q 044915 160 WPLLMPGMFAIVKNPNNP-FYMYCGIVQRITDGKAGV------LFEGGNWDRLI 206 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~-y~~y~G~VQRvtdgkaaV------LFeGgnWdKlv 206 (238)
...|-+|+.|.|.-...+ ..-|.|.|.+|+..-..+ --..|+|++++
T Consensus 252 ~~~i~~G~~v~v~~~~~~~~~~~~G~V~~Is~~~~~~~~~~p~~~~~~~~~~~~ 305 (334)
T TIGR00998 252 LKNVRIGQPVTIRSDLYGSDVVFEGKVTGISMGTGSAFSLLPAQNATGNWIKVV 305 (334)
T ss_pred HhhCCCCCEEEEEEecCCCCCEEEEEEEEECCCcccccccCCCCCCCcCeEEEE
Confidence 355889999999844333 236999999999874222 12357999854
No 20
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=63.33 E-value=11 Score=27.67 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=25.3
Q ss_pred ceEEEeeCCeeEEEeeCCCcceeEEeeccch
Q 044915 183 GIVQRITDGKAGVLFEGGNWDRLITFRLDEL 213 (238)
Q Consensus 183 G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eL 213 (238)
++|-||.++.|-++++++. +.++++.+.|
T Consensus 2 ~ivDRiE~~~AVl~~~~~~--~~~~vp~~~L 30 (71)
T PF11213_consen 2 AIVDRIEGDYAVLELEDGE--KEIDVPRSRL 30 (71)
T ss_pred eEEEEEeCCEEEEEECCCe--EEEEEEHHHC
Confidence 6899999999999999988 7888888777
No 21
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=63.15 E-value=1.9 Score=32.55 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.8
Q ss_pred hhcccCCCCChhhHHHHHHhhCCCC
Q 044915 111 MMGLTGGFPGGEKGLQQFIEQNPPP 135 (238)
Q Consensus 111 mmGLTGGFPGGEkGLk~Fi~~nPPP 135 (238)
+.|+.+||=..-+-+++++++|||=
T Consensus 8 i~G~~~Gff~ar~~~~k~l~~NPpi 32 (64)
T PF03672_consen 8 IVGAVIGFFIARKYMEKQLKENPPI 32 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999984
No 22
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=61.80 E-value=13 Score=25.52 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=25.3
Q ss_pred eeceEEEeeCCeeEEEeeCCCcceeEEeeccchh
Q 044915 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 181 y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe 214 (238)
|.|.|++|++.-+-|-|.++ |+=|+- .++|.
T Consensus 4 ~~g~V~~v~~~G~~V~l~~~-~~gli~--~s~l~ 34 (70)
T cd05698 4 THGTIVKVKPNGCIVSFYNN-VKGFLP--KSELS 34 (70)
T ss_pred EEEEEEEEecCcEEEEECCC-CEEEEE--HHHcC
Confidence 78999999999999999876 877664 55663
No 23
>PRK02749 photosystem I reaction center subunit IV; Provisional
Probab=60.05 E-value=16 Score=28.42 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=44.3
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCe----eEEEeeCCCcc-------eeEE--eeccchhhcc
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGK----AGVLFEGGNWD-------RLIT--FRLDELERRE 217 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgk----aaVLFeGgnWd-------Klvt--f~l~eLe~~~ 217 (238)
+||--|+.|+|.-|.+-+|-=.|.|--|...- +-|.|+-=|.. -+-| |-++|||.++
T Consensus 1 m~i~rGskVrIlR~ESYWyn~vGtV~svD~sgi~YPV~VRF~kvNY~g~sG~~gG~nTNnfa~~El~~v~ 70 (71)
T PRK02749 1 MAISRGDKVRILRPESYWYNEVGTVASVDKSGIKYPVIVRFDKVNYNGFSGVDGGINTNNFAESELEEVE 70 (71)
T ss_pred CccccCCEEEEccccceeecCcceEEEEccCCCeeeEEEEeeeeeccccccccCccccccccHHHHhhhc
Confidence 36788999999999999999999998886552 56778877766 3333 7778887664
No 24
>PRK01844 hypothetical protein; Provisional
Probab=56.15 E-value=2.9 Score=32.29 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.5
Q ss_pred hhcccCCCCChhhHHHHHHhhCCCCC
Q 044915 111 MMGLTGGFPGGEKGLQQFIEQNPPPK 136 (238)
Q Consensus 111 mmGLTGGFPGGEkGLk~Fi~~nPPP~ 136 (238)
+.|+.|||=+.-+=.++++.+|||=.
T Consensus 15 i~G~~~Gff~ark~~~k~lk~NPpin 40 (72)
T PRK01844 15 VAGVALGFFIARKYMMNYLQKNPPIN 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56888999888899999999999853
No 25
>PF02427 PSI_PsaE: Photosystem I reaction centre subunit IV / PsaE; InterPro: IPR003375 PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains []. This subunit may form complexes with ferredoxin and ferredoxin-oxidoreductase in the photosystem I reaction centre.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 1PSF_A 1PSE_A 2WSF_E 2WSC_E 2O01_E 2WSE_E 1GXI_E 1JB0_E 3PCQ_E 1QP2_A ....
Probab=55.09 E-value=27 Score=26.50 Aligned_cols=54 Identities=28% Similarity=0.342 Sum_probs=38.9
Q ss_pred cCCceEEEeCCCCcccceeceEEEeeCCe----eEEEeeCCCcceeEE--eeccchhhcc
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQRITDGK----AGVLFEGGNWDRLIT--FRLDELERRE 217 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQRvtdgk----aaVLFeGgnWdKlvt--f~l~eLe~~~ 217 (238)
.-|+.|+|.-|.+-+|-=.|.|--|...- +.|-|+-=|..-+-| |-++||+.++
T Consensus 2 ~rgskVrIlR~ESYWyn~vGtV~svdqs~i~YPV~VRF~kvNY~g~nTnnfa~~El~~ve 61 (61)
T PF02427_consen 2 KRGSKVRILRKESYWYNEVGTVASVDQSGIRYPVVVRFDKVNYAGVNTNNFALDELEEVE 61 (61)
T ss_dssp -TTSEEEE-SSSSTTTTSEEEEEEETTSSSSSSEEEE-SSS-SSSSSEEEE-GGGEEE--
T ss_pred CCCCEEEEccccceeecccceEEEEccCCccccEEEEEEEecccCccccccchhhheecC
Confidence 35899999999999999999999986653 688899888865544 7788887654
No 26
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=54.78 E-value=6.2 Score=24.44 Aligned_cols=10 Identities=50% Similarity=0.777 Sum_probs=8.5
Q ss_pred chhHHHhhhc
Q 044915 104 EDAFEKEMMG 113 (238)
Q Consensus 104 ed~FeKEmmG 113 (238)
=|+|++|||-
T Consensus 11 CDdFD~emMs 20 (21)
T PF11430_consen 11 CDDFDAEMMS 20 (21)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 4899999994
No 27
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=52.21 E-value=24 Score=25.61 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=30.0
Q ss_pred ceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 167 MFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 167 ~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
|.+-+.||.|+.--.-..|.+|.++++-|-|+|
T Consensus 1 MkLEa~d~~~~~~~~vAtV~~v~g~~l~v~~dg 33 (73)
T PF02820_consen 1 MKLEAVDPRNPSLICVATVVKVCGGRLLVRYDG 33 (73)
T ss_dssp EEEEEEETTECCEEEEEEEEEEETTEEEEEETT
T ss_pred CeEEEECCCCCCeEEEEEEEEEeCCEEEEEEcC
Confidence 667899999998888999999999999999998
No 28
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=51.70 E-value=26 Score=35.83 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=42.5
Q ss_pred cccCCceEEEe--CCC-CcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcc
Q 044915 162 LLMPGMFAIVK--NPN-NPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERRE 217 (238)
Q Consensus 162 ~ilPG~~v~V~--n~~-~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~ 217 (238)
-+..|+.|++. |++ ..|||-.|.|..|.++++.|.|.+| +.|+|..+++..++
T Consensus 607 ~~~~GDrV~~~~N~~~~gv~NGd~g~V~~i~~~~i~v~~~~G---~~v~~~~~~~~~l~ 662 (744)
T TIGR02768 607 KFAAGDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQLDSG---ELVIIPQAEYDALD 662 (744)
T ss_pred eecCCCEEEEEecccccCCcCCCEEEEEEecCCeEEEEECCC---CEEEECHHHhCccC
Confidence 47899999887 433 5799999999999999999999986 56888777665443
No 29
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=51.18 E-value=27 Score=38.01 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=44.6
Q ss_pred cccCCceEEEe-CCC--CcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcc
Q 044915 162 LLMPGMFAIVK-NPN--NPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERRE 217 (238)
Q Consensus 162 ~ilPG~~v~V~-n~~--~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~ 217 (238)
.+..|+.|+.. |-. ++|||-.|.|+.|.++++.|.|.+|...+.|+|..+++..++
T Consensus 633 ~f~vGDrV~f~rNd~~lgV~NGd~GtV~~i~~~~i~v~~d~g~~~r~V~~~~~~~~~ld 691 (1102)
T PRK13826 633 RFAAGDQIVFLKNEGSLGVKNGMIGKVVEAAPNRIVAEIGEGEHRRQVTVEQRFYNNLD 691 (1102)
T ss_pred cccCCCEEEEeeecCccCccCCCeEEEEEecCCeEEEEEcCCCCceEEEechhhccchh
Confidence 47899988774 322 468999999999999999999988887788988776655444
No 30
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=50.81 E-value=34 Score=27.66 Aligned_cols=42 Identities=19% Similarity=0.046 Sum_probs=36.7
Q ss_pred CCcccCCceEEEeCCCCcccceeceEE------EeeCCeeEEEeeCCC
Q 044915 160 WPLLMPGMFAIVKNPNNPFYMYCGIVQ------RITDGKAGVLFEGGN 201 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQ------RvtdgkaaVLFeGgn 201 (238)
.+.|.+|+.|.+..+.+-+.-+=|+|+ ...|...-|+|-+|.
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~ 100 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK 100 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC
Confidence 566999999999998888886669999 678899999999987
No 31
>PRK00523 hypothetical protein; Provisional
Probab=50.15 E-value=4.2 Score=31.48 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.5
Q ss_pred hhcccCCCCChhhHHHHHHhhCCCCC
Q 044915 111 MMGLTGGFPGGEKGLQQFIEQNPPPK 136 (238)
Q Consensus 111 mmGLTGGFPGGEkGLk~Fi~~nPPP~ 136 (238)
+.|+.|||=..-+=+++++.+|||=.
T Consensus 16 i~G~~~Gffiark~~~k~l~~NPpin 41 (72)
T PRK00523 16 IVGGIIGYFVSKKMFKKQIRENPPIT 41 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 56888899888888999999999864
No 32
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=48.17 E-value=36 Score=27.54 Aligned_cols=34 Identities=29% Similarity=0.605 Sum_probs=27.8
Q ss_pred CceEEEeCCCCcccceeceEEEe-eCCeeEEEeeCC
Q 044915 166 GMFAIVKNPNNPFYMYCGIVQRI-TDGKAGVLFEGG 200 (238)
Q Consensus 166 G~~v~V~n~~~~y~~y~G~VQRv-tdgkaaVLFeGg 200 (238)
|+.|......|=|| |-|.|.+. +.+++-|-|..+
T Consensus 1 g~~VlAR~~~DG~Y-Y~GtV~~~~~~~~~lV~f~~~ 35 (124)
T PF15057_consen 1 GQKVLARREEDGFY-YPGTVKKCVSSGQFLVEFDDG 35 (124)
T ss_pred CCeEEEeeCCCCcE-EeEEEEEccCCCEEEEEECCC
Confidence 67899999999998 99999766 777788888443
No 33
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=47.47 E-value=17 Score=28.32 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=29.9
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNW 202 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnW 202 (238)
++-.|..|.|.|++++=-+|-|+|++|-.+.-+..+=-|.|
T Consensus 3 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~W 43 (121)
T cd04717 3 QYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCW 43 (121)
T ss_pred EEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEE
Confidence 35689999999998766688999999987764433333444
No 34
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=47.19 E-value=41 Score=29.03 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=29.3
Q ss_pred CCCCCCcccCCceEEEeCCCCcccceeceEEEeeCCe
Q 044915 156 KPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGK 192 (238)
Q Consensus 156 ~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgk 192 (238)
+++....+-+|..|+|+ +.+|-+|.|.|++|-..|
T Consensus 117 ~~~~~~~~e~Gd~VrI~--~GpFa~f~g~V~evd~ek 151 (178)
T COG0250 117 PKKPKVDFEPGDVVRII--DGPFAGFKAKVEEVDEEK 151 (178)
T ss_pred CCcccccCCCCCEEEEe--ccCCCCccEEEEEEcCcC
Confidence 34455669999999998 479999999999999884
No 35
>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
Probab=47.03 E-value=43 Score=30.95 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=36.6
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWD 203 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWd 203 (238)
-+++|++|.|.--.|- |=+|.|-.|...+--|+.+|=||.
T Consensus 72 ~ff~GDtVeVlvGkDk--GkqG~Vtqv~r~~s~VvV~gln~k 111 (236)
T KOG1708|consen 72 HFFFGDTVEVLVGKDK--GKQGEVTQVIRHRSWVVVKGLNTK 111 (236)
T ss_pred eEecCCEEEEEecccC--CccceEEEEeecCceEEEcccchh
Confidence 3799999999999885 889999999999999999999995
No 36
>PRK12784 hypothetical protein; Provisional
Probab=46.90 E-value=21 Score=28.53 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=29.2
Q ss_pred CCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccc
Q 044915 175 NNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDE 212 (238)
Q Consensus 175 ~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~e 212 (238)
.++|-+|.|.|+.|.=.+..-..| |.||.+++-.|
T Consensus 6 e~iyS~~~G~Vekifi~esSyVYE---WEkL~~I~~~d 40 (84)
T PRK12784 6 EEICSSYEGKVEEIFVNESSYVYE---WEKLMMIRKNN 40 (84)
T ss_pred hhhcCccccEEEEEEEcCCceEEe---eeeeeEEeecC
Confidence 467888999999998887777776 99999988654
No 37
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=46.21 E-value=27 Score=32.51 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCcccCCceEEEeCCCCcc-cceeceEEEeeCCeeEE--E----eeCCCcceeE
Q 044915 160 WPLLMPGMFAIVKNPNNPF-YMYCGIVQRITDGKAGV--L----FEGGNWDRLI 206 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y-~~y~G~VQRvtdgkaaV--L----FeGgnWdKlv 206 (238)
+..|-+|+.|.|.-..-++ .-|.|.|-+|+.+...+ + --.|||.|.+
T Consensus 263 l~~v~~Gq~V~I~~da~p~~~~~~G~V~~I~~~~~~~~~~lp~~~~~g~~~~~~ 316 (390)
T PRK15136 263 LANMRIGQPATITSDIYGDDVVYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVV 316 (390)
T ss_pred HhcCCCCCEEEEEEecCCCCceEEEEEEEECCcccccccCCCCccCCCCeEEEE
Confidence 3457899999997433232 35999999998663221 1 2358999974
No 38
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=45.60 E-value=37 Score=28.89 Aligned_cols=37 Identities=19% Similarity=0.464 Sum_probs=29.6
Q ss_pred cCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCCc
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGNW 202 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgnW 202 (238)
|-|.+|.+.+.+.. -+.|.|.+|. ||.+.++..+|.|
T Consensus 90 lVGk~V~~~~~~g~--~~tG~V~~V~~~~g~~~~~~v~G~~ 128 (142)
T PRK09618 90 LIGKEVEWEGEDGE--IVSGTVTSVKQKDGDYPLVLDNGTW 128 (142)
T ss_pred HhCCEEEEEeCCCC--EEEEEEEEEEEcCCcEEEEEECCEE
Confidence 67999999866654 4789999886 8888888888866
No 39
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=44.09 E-value=56 Score=28.73 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=39.7
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhc
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERR 216 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~ 216 (238)
+-|||.|.+..++ -.+.|.|.+|++++|-|=|--===-|=+.|.++=++.+
T Consensus 91 ~~vGm~~~~~~~~---~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~ 141 (174)
T COG1047 91 LEVGMEVEAEGGD---GEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVR 141 (174)
T ss_pred CCCCcEEEEcCCC---ceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEe
Confidence 6799999998887 67899999999999999875533446677776655444
No 40
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=41.08 E-value=48 Score=26.39 Aligned_cols=40 Identities=25% Similarity=0.167 Sum_probs=34.6
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWD 203 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWd 203 (238)
.|.+|++|.|+.-.| .+-+|.|.+|-..+--|+.||=|-.
T Consensus 4 ~i~kGD~V~Vi~G~d--KGk~G~V~~V~~~~~~V~Vegvn~~ 43 (105)
T PRK00004 4 KIKKGDTVIVIAGKD--KGKRGKVLKVLPKKNKVIVEGVNIV 43 (105)
T ss_pred cccCCCEEEEeEcCC--CCcEEEEEEEEcCCCEEEEcCcEEE
Confidence 488999999999765 8999999999988889999996643
No 41
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=38.21 E-value=48 Score=25.87 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=21.1
Q ss_pred cccCCceEEEeCCC-------CcccceeceEEEeeCC
Q 044915 162 LLMPGMFAIVKNPN-------NPFYMYCGIVQRITDG 191 (238)
Q Consensus 162 ~ilPG~~v~V~n~~-------~~y~~y~G~VQRvtdg 191 (238)
-+-|||+|+|.+.+ .-|+| |.|-.+.+|
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWm--g~Vi~~~gg 39 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWM--GQVIHCEGG 39 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEE--EEEEEEecc
Confidence 35799999999887 45554 888777665
No 42
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=35.60 E-value=1.1e+02 Score=27.04 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=40.8
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhccc
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREK 218 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~ 218 (238)
|-+||.|...+++.. +.+.|..|.+.+|-|=|--===.|=++|.++=+++++.
T Consensus 90 l~~G~~~~~~~~~G~---~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr~a 142 (196)
T PRK10737 90 LQVGMRFLAETDQGP---VPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREA 142 (196)
T ss_pred CCCCCEEEEeCCCCc---EEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEeccC
Confidence 789999999888764 57889999999988866543345778888876666543
No 43
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=35.41 E-value=45 Score=31.80 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=35.7
Q ss_pred CCCcccCCceEEEeCCCCcccc---eeceEEEeeCCeeEEEee-------CCCcceeE
Q 044915 159 EWPLLMPGMFAIVKNPNNPFYM---YCGIVQRITDGKAGVLFE-------GGNWDRLI 206 (238)
Q Consensus 159 ~~~~ilPG~~v~V~n~~~~y~~---y~G~VQRvtdgkaaVLFe-------GgnWdKlv 206 (238)
.+.-|-||+.|.|. -|.|-. |+|.|-.|+++.-+ -|- .|||-|++
T Consensus 255 qL~~~r~Gq~a~I~--~da~~~~~~~~G~v~~i~~~tg~-~fsllp~~natgN~tkvv 309 (352)
T COG1566 255 QLARVRPGQPAEIT--LDAYPGNGVVEGIVEGIAPATGS-AFSLLPAQNATGNWTKVV 309 (352)
T ss_pred ecCcccCCCeEEEE--EEcCCCceEEEEEEEEecCCccc-ccccCCCccCCCCEEEEE
Confidence 34558899999886 355545 99999999999888 665 49999985
No 44
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=35.18 E-value=68 Score=24.59 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=27.7
Q ss_pred cCCceEEEeCCCCcccceeceEEEe-eCCeeEEEeeCCCc
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQRI-TDGKAGVLFEGGNW 202 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQRv-tdgkaaVLFeGgnW 202 (238)
-||++|...+-.+..|+-.|+|-.| .||+ |.+-.+||
T Consensus 64 ~~Gdivv~~~~~~~~~GHVaIV~~v~~~~~--i~v~e~N~ 101 (124)
T PF05257_consen 64 QPGDIVVWDSGSGGGYGHVAIVESVNDGGT--ITVIEQNW 101 (124)
T ss_dssp -TTEEEEEEECTTTTT-EEEEEEEE-TTSE--EEEEECSS
T ss_pred ccceEEEeccCCCCCCCeEEEEEEECCCCE--EEEEECCc
Confidence 4899999988888899999999999 5553 34445666
No 45
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=34.00 E-value=40 Score=26.80 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=24.6
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCe
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGK 192 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgk 192 (238)
++-.|..|.|.++++.=-.|-|.|+++-.++
T Consensus 3 ~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~ 33 (121)
T cd04714 3 IIRVGDCVLFKSPGRPSLPYVARIESLWEDP 33 (121)
T ss_pred EEEcCCEEEEeCCCCCCCCEEEEEEEEEEcC
Confidence 4668999999998875557799999986544
No 46
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=33.76 E-value=75 Score=24.49 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=34.3
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNW 202 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnW 202 (238)
.|.+|+.|.|+.-. +-+=+|.|-+|-..+--|+.||=|-
T Consensus 8 ~I~~GD~V~Vi~G~--dKGK~G~V~~V~~~~~~V~Vegvn~ 46 (83)
T CHL00141 8 HVKIGDTVKIISGS--DKGKIGEVLKIIKKSNKVIVKGINI 46 (83)
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEEcCCCEEEEcCcEE
Confidence 58999999999865 4699999999999999999999763
No 47
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=33.44 E-value=92 Score=22.59 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=20.8
Q ss_pred CCceEEEeCCCCcccceeceEEEeeCCee
Q 044915 165 PGMFAIVKNPNNPFYMYCGIVQRITDGKA 193 (238)
Q Consensus 165 PG~~v~V~n~~~~y~~y~G~VQRvtdgka 193 (238)
+|..|.+..|++.+--|...|+++.++..
T Consensus 32 ~Gdivv~~~~~~~~~~~vkRv~~~~~~~~ 60 (90)
T TIGR02754 32 IGNVVVVRHPLQPYGLIIKRLAAVDDNGL 60 (90)
T ss_pred CCeEEEEecCCCCcceEEEEeeEEcCCeE
Confidence 58888888777666666777887776643
No 48
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=32.66 E-value=77 Score=26.05 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=34.9
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcce
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDR 204 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdK 204 (238)
.|.-|+.|+|+--. |-+.+|.|-+|-..+--|+.||=|-.|
T Consensus 41 ~IkkGD~V~Vi~Gk--~KGk~GkV~~V~~~~~~V~Vegvn~~k 81 (114)
T TIGR01080 41 PVRKGDKVRIMRGD--FKGHEGKVSKVDLKRYRIYVEGVTKEK 81 (114)
T ss_pred eeecCCEEEEecCC--CCCCEEEEEEEEcCCCEEEEcCeEEEC
Confidence 58999999999877 579999999998888889999966433
No 49
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=32.50 E-value=72 Score=34.39 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=42.3
Q ss_pred cccCCceEEEeC-CC--CcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcc
Q 044915 162 LLMPGMFAIVKN-PN--NPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERRE 217 (238)
Q Consensus 162 ~ilPG~~v~V~n-~~--~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~ 217 (238)
.+..|..|+..- -. .+||+=.|.|..|.++.+-|.|.+| +.|+|..+++..++
T Consensus 600 ~~~vGDrVm~~rNd~~lgV~NGd~GtV~~I~~~~i~V~~d~g---r~V~~~~~~~~~ld 655 (988)
T PRK13889 600 SFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQSMSVRLDDG---RSVAFDLKDYDRID 655 (988)
T ss_pred cccCCCEEEEeecCCcCCEeCCCeEEEEEecCCeEEEEECCC---eEEEecHHHcCccc
Confidence 478999887653 22 3789999999999999999999875 67899888775443
No 50
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=30.96 E-value=1.3e+02 Score=23.15 Aligned_cols=39 Identities=31% Similarity=0.421 Sum_probs=28.3
Q ss_pred ceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcccCC
Q 044915 180 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGP 220 (238)
Q Consensus 180 ~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~gP 220 (238)
.|.|.|-+|.||---.+.-.++ +.+++||..+..-+...
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~~--~~~~vrL~gIdaPe~~~ 40 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPKN--KLITIRLSGIDAPETAR 40 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCCC--CEEEEEEEeccCCccCC
Confidence 3688999999998776653333 67999999886654443
No 51
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=29.18 E-value=53 Score=24.06 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=24.9
Q ss_pred ccCCceEEEeCCCC--cccceeceEEEeeCCee
Q 044915 163 LMPGMFAIVKNPNN--PFYMYCGIVQRITDGKA 193 (238)
Q Consensus 163 ilPG~~v~V~n~~~--~y~~y~G~VQRvtdgka 193 (238)
+-.|+.|.|.+.++ .-..|.|+|+++..++.
T Consensus 4 y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~ 36 (123)
T cd04370 4 YEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN 36 (123)
T ss_pred EecCCEEEEecCCcCCCCCCEEEEEeeeeECCC
Confidence 45799999999886 45677999999988754
No 52
>PRK14644 hypothetical protein; Provisional
Probab=28.73 E-value=1.6e+02 Score=24.45 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=37.3
Q ss_pred cCCceEEEe--CCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccch
Q 044915 164 MPGMFAIVK--NPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDEL 213 (238)
Q Consensus 164 lPG~~v~V~--n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eL 213 (238)
+-|..|+|+ +|.+-=--|.|.+..+.|+.+.+..+-..=.+-|+|..+++
T Consensus 83 ~~G~~v~V~l~~~~~~~~~~~G~L~~v~~~~i~l~~~~k~~~~~i~~~~~~i 134 (136)
T PRK14644 83 HIGEIIDVSLNKEVNKTDFITGELLENNPETITLKWNCKGQFRKVEINKENI 134 (136)
T ss_pred hCCCeEEEEEccCcCCeEEEEEEEEEEeCCEEEEEEecCCcEEEEEECHHHh
Confidence 568888875 88666678999999999998877655433335588877765
No 53
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.49 E-value=96 Score=21.16 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=24.9
Q ss_pred eeceEEEeeCCeeEEEeeCCCcceeEEeeccch
Q 044915 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDEL 213 (238)
Q Consensus 181 y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eL 213 (238)
|.|.|.+|++.-+-|-+++.+|+=++- .++|
T Consensus 6 v~g~V~~i~~~g~~v~l~~~~~~g~i~--~~~l 36 (77)
T cd05708 6 IDGTVRRVEDYGVFIDIDGTNVSGLCH--KSEI 36 (77)
T ss_pred EEEEEEEEEcceEEEEECCCCeEEEEE--HHHC
Confidence 689999999999999998766776664 3555
No 54
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=27.81 E-value=1.3e+02 Score=30.50 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=31.6
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
-|-+|+.|.|..-+..=..+.|.|.||++..+-|-|+.
T Consensus 57 ~~~~GD~v~i~~~~~~~~~~~g~V~~v~~~~i~v~~~~ 94 (637)
T TIGR00376 57 EISVGDIVLVSRGNPLQSDLTGVVTRVGKRFITVALEE 94 (637)
T ss_pred cCCCCCEEEEecCCCCCCCcEEEEEEEcCcEEEEEECC
Confidence 46699999998654444567999999999999999987
No 55
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=27.56 E-value=1.2e+02 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.084 Sum_probs=33.2
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNW 202 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnW 202 (238)
.|..|+.|.|+.-. +-+-+|.|.+|-..+--|+.||=|-
T Consensus 6 ~I~kGD~V~Vi~G~--dKGK~G~V~~V~~~~~~V~Vegvn~ 44 (76)
T PRK12281 6 KVKKGDMVKVIAGD--DKGKTGKVLAVLPKKNRVIVEGVKI 44 (76)
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEEcCCCEEEEcCcEE
Confidence 48999999999865 5699999999988888899999653
No 56
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=27.15 E-value=86 Score=24.92 Aligned_cols=56 Identities=29% Similarity=0.350 Sum_probs=33.0
Q ss_pred ccCCceEEEeCCCCcccceeceEEEee--CCeeEEEe-eCCCcceeEEeeccchhhcccCCCCCCCcch
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLF-EGGNWDRLITFRLDELERREKGPPGRNPKSA 228 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLF-eGgnWdKlvtf~l~eLe~~~~gPPm~NPKS~ 228 (238)
|-.||.||-+|.. =.|.|..|. ||+.-|++ ..+ +-++.+-||.+++.+--+.-+-.
T Consensus 3 I~vGs~VRY~~TG-----T~G~V~diK~ed~~~wv~LD~t~-----L~Yr~~~Lev~ek~~~k~~~~~~ 61 (91)
T PF09871_consen 3 IKVGSYVRYINTG-----TVGKVVDIKEEDGETWVLLDSTD-----LYYRPDYLEVIEKEKEKKEEKKE 61 (91)
T ss_pred ceeCCEEEECCCC-----eEEEEEEEEEeCCCeEEEEccCC-----ceeecceeEEecchhhhhhcccc
Confidence 6789999988853 346666553 24444444 223 44777778877755444444433
No 57
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=26.70 E-value=1.2e+02 Score=30.92 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=42.3
Q ss_pred cccCCceEEEeCC--C-CcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhccc
Q 044915 162 LLMPGMFAIVKNP--N-NPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREK 218 (238)
Q Consensus 162 ~ilPG~~v~V~n~--~-~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~ 218 (238)
-.++|..|++..- + +.|||=.|+|-+..+++..|.|+... ++.++|..++|...+-
T Consensus 480 ~~~~Gd~Vm~t~Nd~~~gl~NGdiG~v~~~~~~~l~v~f~~~~-g~~~~~~~~~l~~~~~ 538 (615)
T PRK10875 480 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGELRVWFQLPD-GNIKSVQPSRLPEHET 538 (615)
T ss_pred cccCCCEEEEeecCcccCcccCceEEEeecCCCeEEEEEECCC-CcEEEechHhccccce
Confidence 4799999988642 2 68999999999998998899997422 2567787777765543
No 58
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=26.60 E-value=68 Score=22.66 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=16.9
Q ss_pred eceEEEeeCCeeEEEeeCCC
Q 044915 182 CGIVQRITDGKAGVLFEGGN 201 (238)
Q Consensus 182 ~G~VQRvtdgkaaVLFeGgn 201 (238)
.|++=|.+||.++|.|..+.
T Consensus 5 ~gi~~~LSng~vqv~FnD~t 24 (68)
T PF00659_consen 5 YGIGYQLSNGTVQVNFNDHT 24 (68)
T ss_dssp SEEEEEETTSEEEEEETTS-
T ss_pred eEEEEEEeCCCEEEEEeCCC
Confidence 48889999999999998764
No 59
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=26.14 E-value=2.4e+02 Score=21.88 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=33.6
Q ss_pred cCCceEEEeCCCCcccceeceEEEeeCCeeEEE-ee-CCCcc------eeEEeeccchh
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVL-FE-GGNWD------RLITFRLDELE 214 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVL-Fe-GgnWd------Klvtf~l~eLe 214 (238)
-||-......++..++ +.|.|+.|...+--|. +. +..|+ -+|||.|++..
T Consensus 46 ~~GG~~~~~~~~g~~~-~~g~v~~v~p~~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~ 103 (149)
T cd08891 46 RAGGRWYEIGEDGTEC-EWGTVLAWEPPSRLVFTWQINADWRPDPDKASEVEVRFEAVG 103 (149)
T ss_pred cCCcEEEEecCCCcEe-ceEEEEEEcCCCEEEEEeccCCCcCcCCCCceEEEEEEEECC
Confidence 4666666666655555 4699999998865543 33 33453 48999998864
No 60
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=25.78 E-value=85 Score=21.59 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=17.8
Q ss_pred eeceEEEeeCCeeEEEeeCC
Q 044915 181 YCGIVQRITDGKAGVLFEGG 200 (238)
Q Consensus 181 y~G~VQRvtdgkaaVLFeGg 200 (238)
|+|.|++|.+.-+-|-+++|
T Consensus 4 v~g~V~~v~~~Gv~V~l~~~ 23 (69)
T cd05697 4 VKGTIRKLRPSGIFVKLSDH 23 (69)
T ss_pred EEEEEEEEeccEEEEEecCC
Confidence 78999999999999999865
No 61
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=25.74 E-value=1.7e+02 Score=21.15 Aligned_cols=43 Identities=7% Similarity=0.186 Sum_probs=31.4
Q ss_pred EEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccch
Q 044915 169 AIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDEL 213 (238)
Q Consensus 169 v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eL 213 (238)
|++-+ +.-|.-++|.|.+|..-+--+.+.+.. +...-++++++
T Consensus 47 ity~~-~g~~~~~~G~I~~id~~~~~l~~~~~~-~~~~~I~~~~I 89 (92)
T PF08863_consen 47 ITYYE-DGYYQSVTGTIHKIDEINRTLKLKDED-GETEKIPFDDI 89 (92)
T ss_pred EEEEE-CCeeEEEEEEEEEEcCCCCEEEEEeCC-CCEEEEEhhhE
Confidence 34444 455677999999999988888888854 56666677665
No 62
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=24.96 E-value=81 Score=30.35 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=35.1
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEe----eCCCcceeEE
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLF----EGGNWDRLIT 207 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLF----eGgnWdKlvt 207 (238)
-.|-||+.++++|.+=+--..-|.- -++|++-|+| +.+.|.-||-
T Consensus 47 ~~l~~gDlLV~NdTkVipARL~g~k--~tG~~vEvlll~~l~~~~w~~lv~ 95 (344)
T TIGR00113 47 DFFNEGDLLVLNNTKVIPARLFGRK--ESGGKVEVLLLRMLDENRWLALIK 95 (344)
T ss_pred hhcCCCCEEEEeCcEEeeeeEEEEc--CCCCEEEEEEEEEcCCCeEEEEee
Confidence 3467899999999988888887754 3899999998 3568876653
No 63
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=24.56 E-value=1e+02 Score=22.10 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=24.5
Q ss_pred eeceEEEeeCCeeEEEeeCCCcceeEEeeccchh
Q 044915 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 181 y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe 214 (238)
|.|.|.+|++.-+-|-+++| ++-+| +.++|.
T Consensus 18 ~~g~V~~v~~~G~fv~l~~~-~~g~v--~~~el~ 48 (83)
T cd04461 18 VHGYVRNITPYGVFVEFLGG-LTGLA--PKSYIS 48 (83)
T ss_pred EEEEEEEEeeceEEEEcCCC-CEEEE--EHHHCC
Confidence 58999999999999998876 77766 456664
No 64
>PRK06792 flgD flagellar basal body rod modification protein; Validated
Probab=24.45 E-value=2.5e+02 Score=25.30 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=34.7
Q ss_pred cCCceEEEeCCCCcccceeceEEEee---CCeeEEEeeCCCcceeEEeeccchhhcccCC-CCCCCc
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQRIT---DGKAGVLFEGGNWDRLITFRLDELERREKGP-PGRNPK 226 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQRvt---dgkaaVLFeGgnWdKlvtf~l~eLe~~~~gP-Pm~NPK 226 (238)
|-|-+|.+.+.+.. .+.|.|.+|. +|.+. |..+|.| +.|+.+..|..-| +-.||+
T Consensus 116 lIGK~V~~~~~dG~--~vtG~V~sV~~~~~g~v~-l~vdg~~-----v~l~~V~~Vsd~~~~~~~~~ 174 (190)
T PRK06792 116 FLGKYVRGVSNDGK--QVTGQVETVRLAENNDVQ-LIVDNQV-----VSLRFVERVSDKPITETNPE 174 (190)
T ss_pred hcCcEEEEEcCCCC--EEEEEEEEEEEccCCcEE-EEECCEE-----EeccceeEecCCCCCCCCCC
Confidence 56999998887764 4799999886 45454 4455654 4566665553332 234454
No 65
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=24.29 E-value=1.2e+02 Score=20.73 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=23.5
Q ss_pred eeceEEEeeCCeeEEEeeCCCcceeEEeeccch
Q 044915 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDEL 213 (238)
Q Consensus 181 y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eL 213 (238)
|.|.|.+|.+..+-|-|.++ ++=++ +.++|
T Consensus 4 v~g~V~~v~~~Gv~V~l~~~-~~G~v--~~s~l 33 (68)
T cd05707 4 VRGFVKNIANNGVFVTLGRG-VDARV--RVSEL 33 (68)
T ss_pred EEEEEEEEECccEEEEeCCC-CEEEE--EHHHC
Confidence 68999999999999999876 55554 45555
No 66
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=23.91 E-value=88 Score=19.79 Aligned_cols=20 Identities=35% Similarity=0.220 Sum_probs=16.4
Q ss_pred eeceEEEeeCCeeEEEeeCC
Q 044915 181 YCGIVQRITDGKAGVLFEGG 200 (238)
Q Consensus 181 y~G~VQRvtdgkaaVLFeGg 200 (238)
|.|.|++|.+..+-|-++.|
T Consensus 1 v~g~V~~v~~~g~~v~l~~~ 20 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDG 20 (65)
T ss_pred CEEEEEEEEeeeEEEEecCC
Confidence 57899999988888888755
No 67
>PRK14449 acylphosphatase; Provisional
Probab=23.78 E-value=74 Score=24.23 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.7
Q ss_pred cceeceEEEeeCCeeEEEeeCC
Q 044915 179 YMYCGIVQRITDGKAGVLFEGG 200 (238)
Q Consensus 179 ~~y~G~VQRvtdgkaaVLFeGg 200 (238)
++.+|.|+-..||.+-++++|-
T Consensus 29 lgl~G~V~N~~dG~Vei~~~G~ 50 (90)
T PRK14449 29 LGITGYAENLYDGSVEVVAEGD 50 (90)
T ss_pred cCCEEEEEECCCCeEEEEEEeC
Confidence 4678999999999999999984
No 68
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=23.77 E-value=84 Score=29.20 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=24.4
Q ss_pred CCcccCCceEEEeC---CCCcccceeceEEEeeCC
Q 044915 160 WPLLMPGMFAIVKN---PNNPFYMYCGIVQRITDG 191 (238)
Q Consensus 160 ~~~ilPG~~v~V~n---~~~~y~~y~G~VQRvtdg 191 (238)
..-|-||+.|.|+- |...|-.|.|.|.+|+..
T Consensus 305 ~~~v~~G~~v~v~~~~~~~~~~~~~~g~V~~Is~~ 339 (421)
T TIGR03794 305 GKKIRPGMSVQITPSTVKAERDGYIRGTVTSVSEY 339 (421)
T ss_pred HhhCCCCCEEEEEEcccccceeeeEEEEEEEecCC
Confidence 34578999999983 344555689999999974
No 69
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=23.67 E-value=1.7e+02 Score=29.25 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=44.1
Q ss_pred CCCCCCCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCC
Q 044915 153 RKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGN 201 (238)
Q Consensus 153 ~kp~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgn 201 (238)
..+-......+-|||.+-+.+++|+-.-..+.|--|+++|+...|+|.+
T Consensus 80 ~~~~~~~~~~~k~GmklE~vd~~~~s~~~~asV~~v~g~Rl~l~~~g~~ 128 (478)
T KOG3766|consen 80 RQPTESPNNCFKPGMKLEAVDPDNPSSTWIATVEEVCGGRLRLRFDGLD 128 (478)
T ss_pred cccccCCCcccCCCceEEEEecCCCceEEEEEEEeecccEEEEEecCcc
Confidence 3555666777899999999999999999999999999999999999977
No 70
>PRK14445 acylphosphatase; Provisional
Probab=23.62 E-value=74 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred cceeceEEEeeCCeeEEEeeCCC
Q 044915 179 YMYCGIVQRITDGKAGVLFEGGN 201 (238)
Q Consensus 179 ~~y~G~VQRvtdgkaaVLFeGgn 201 (238)
++..|.|+-..||.+-+.++|-.
T Consensus 30 ~gl~G~V~N~~dG~Vei~~qG~~ 52 (91)
T PRK14445 30 LNLSGWVRNLPDGTVEIEAQGSS 52 (91)
T ss_pred CCCEEEEEECCCCeEEEEEEECH
Confidence 56789999999999999999854
No 71
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=23.40 E-value=79 Score=31.10 Aligned_cols=60 Identities=32% Similarity=0.441 Sum_probs=34.3
Q ss_pred ccCCCCChhhHHHHHHhhCC--CCCCCCccCCCCccccccCCCCCCCCCCcccCCce--------EEEeCCC
Q 044915 114 LTGGFPGGEKGLQQFIEQNP--PPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMF--------AIVKNPN 175 (238)
Q Consensus 114 LTGGFPGGEkGLk~Fi~~nP--PP~k~~~~~~~~~~~~~~~~kp~~p~~~~ilPG~~--------v~V~n~~ 175 (238)
-||||=|+.- .-...-.|+ |+.++..+.......++.++.|++|+-| |+|=|. |+-.||.
T Consensus 20 st~g~~g~~~-~~h~~y~n~r~~~~~~T~sr~~~~~~~t~pkpPkppekp-l~pymrySrkvWd~VkA~nPe 89 (410)
T KOG4715|consen 20 STPGFGGYNP-YTHLAYSNYRLPGNPATNSRVFQNSSITRPKPPKPPEKP-LMPYMRYSRKVWDQVKASNPE 89 (410)
T ss_pred CCCCCCCCCc-chhhhccCcCCCCCCCCcccccccccccCCCCCCCCCcc-cchhhHHhhhhhhhhhccCcc
Confidence 4888888765 111122333 2223332333445667888889999988 677653 4555654
No 72
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=22.62 E-value=1.4e+02 Score=23.93 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=33.7
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNW 202 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnW 202 (238)
.|..|+.|.|+--. +-+-+|.|.+|-..+--|+.||=|-
T Consensus 3 ~ikkGD~V~Vi~G~--dKGK~G~V~~V~~~~~~V~VegvN~ 41 (104)
T TIGR01079 3 KIKKGDTVKVISGK--DKGKRGKVLKVLPKTNKVIVEGVNM 41 (104)
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEEcCCCEEEECCcEE
Confidence 37899999999865 5699999999998888999999654
No 73
>PF11515 Cul7: Mouse development and cellular proliferation protein Cullin-7; InterPro: IPR021097 The CPH domain is found in the Cullin-7, PARC and HERC2 proteins, which are all components of known or predicted E3-ubiquitin ligases. The CPH domain is a protein-protein interaction module that binds the teramerisation domain of the tumour suppressor protein p53 []. Structurally it forms a beta-barrel fold similar to the SH3, Tudor and KOW and domains. Unlike the SH3 and Tudor domains, which bind to small peptides, the CPH domain appears to bind to an extended surface on p53.; PDB: 2JUF_A 2JNG_A.
Probab=22.59 E-value=61 Score=25.55 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=18.4
Q ss_pred ccCCceEEE-eCCCCcccceeceEEEeeCCe
Q 044915 163 LMPGMFAIV-KNPNNPFYMYCGIVQRITDGK 192 (238)
Q Consensus 163 ilPG~~v~V-~n~~~~y~~y~G~VQRvtdgk 192 (238)
|-|||+|+- .|-.++.-+=+|.|++++...
T Consensus 18 i~~GM~VRc~~~yeeV~~GD~G~V~k~~~dg 48 (78)
T PF11515_consen 18 IQPGMRVRCCRDYEEVRAGDEGEVFKQDRDG 48 (78)
T ss_dssp --TT-EEEESS-BTTB-TT-EEE-EEEE-TT
T ss_pred CCCCcEEEEecccccccccccceeEeeccCC
Confidence 789999996 577888899999999987654
No 74
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=22.48 E-value=1.3e+02 Score=19.63 Aligned_cols=30 Identities=30% Similarity=0.255 Sum_probs=23.7
Q ss_pred eeceEEEeeCCeeEEEeeCCCcceeEEeeccch
Q 044915 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDEL 213 (238)
Q Consensus 181 y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eL 213 (238)
|.|.|.+|++--+-|.++.+ |+=++- .++|
T Consensus 4 ~~g~V~~i~~~G~fv~l~~~-~~g~~~--~~~l 33 (68)
T cd05685 4 LEGVVTNVTDFGAFVDIGVK-QDGLIH--ISKM 33 (68)
T ss_pred EEEEEEEEecccEEEEcCCC-CEEEEE--HHHC
Confidence 78999999999999999765 777764 3455
No 75
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=22.40 E-value=1.3e+02 Score=28.87 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=35.1
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEe----eCCCcceeEE
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLF----EGGNWDRLIT 207 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLF----eGgnWdKlvt 207 (238)
.|-||+.++++|..=+--..-|.-+ -++|++-|+| +.+.|+-||.
T Consensus 49 ~l~~gDlLV~NdTkVipARL~g~k~-~tg~~vEvlll~~l~~~~w~~lv~ 97 (342)
T PRK00147 49 YLNPGDLLVFNDTRVIPARLFGRKK-ETGGKIEVLLLRRLDEDRWLALVR 97 (342)
T ss_pred hcCCCCEEEEEcCeeeeeeEEEEEC-CCCCeEEEEEEEEcCCCeEEEEee
Confidence 4569999999999888888777522 3899999998 4578987764
No 76
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=22.07 E-value=83 Score=23.38 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=18.4
Q ss_pred cceeceEEEeeCCeeEEEeeCCC
Q 044915 179 YMYCGIVQRITDGKAGVLFEGGN 201 (238)
Q Consensus 179 ~~y~G~VQRvtdgkaaVLFeGgn 201 (238)
++.+|.|+-..||.+-++++|-.
T Consensus 30 ~gl~G~V~N~~dg~V~i~~~G~~ 52 (91)
T PF00708_consen 30 LGLTGWVRNLPDGSVEIEAEGEE 52 (91)
T ss_dssp TT-EEEEEE-TTSEEEEEEEEEH
T ss_pred hCCceEEEECCCCEEEEEEEeCH
Confidence 35789999999999999999944
No 77
>PF13550 Phage-tail_3: Putative phage tail protein
Probab=21.52 E-value=1.2e+02 Score=23.45 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=23.4
Q ss_pred CCCCCcccCCceEEEeCCCCcccceeceEEEeeC
Q 044915 157 PPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITD 190 (238)
Q Consensus 157 ~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtd 190 (238)
++....|-||..|.|..+ -..+...|++|.|
T Consensus 134 ~~~~~~l~pGDvi~l~~~---~~~~~~RI~~i~~ 164 (164)
T PF13550_consen 134 PPDGLALEPGDVIALSDD---GRDMRFRITEIED 164 (164)
T ss_pred ChhhccCCCCCEEEEEeC---CCceEEEEEEEeC
Confidence 344556999999999988 3367778887765
No 78
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=21.46 E-value=2.7e+02 Score=22.96 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=35.8
Q ss_pred ccCCceEEEe--CCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhh
Q 044915 163 LMPGMFAIVK--NPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELER 215 (238)
Q Consensus 163 ilPG~~v~V~--n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~ 215 (238)
-+=|-.|+|+ ++.+-=--|+|.+..+.|..+.+--+|.. |-+++.++++..
T Consensus 95 r~~G~~v~V~~~~~~~~~~~~~G~L~~~~~~~i~l~~~~~~--~~~~i~~~~I~~ 147 (154)
T PRK00092 95 RFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGKE--KEVEIPLDNIAK 147 (154)
T ss_pred HhCCCeEEEEEEcccCCceEEEEEEEEeeCCEEEEEECCCe--EEEEEEHHHcce
Confidence 3568888886 44444456789999999987665555543 588888887743
No 79
>PRK14429 acylphosphatase; Provisional
Probab=21.20 E-value=90 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.8
Q ss_pred cceeceEEEeeCCeeEEEeeCCCc
Q 044915 179 YMYCGIVQRITDGKAGVLFEGGNW 202 (238)
Q Consensus 179 ~~y~G~VQRvtdgkaaVLFeGgnW 202 (238)
++..|.|+-..||.+-++.+|-.-
T Consensus 28 ~gl~G~V~N~~dG~Vei~~qG~~~ 51 (90)
T PRK14429 28 LGVTGYVTNCEDGSVEILAQGSDP 51 (90)
T ss_pred hCCEEEEEECCCCeEEEEEEeCHH
Confidence 467899999999999999999553
No 80
>smart00439 BAH Bromo adjacent homology domain.
Probab=20.45 E-value=1.2e+02 Score=22.47 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=23.3
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCee
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKA 193 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgka 193 (238)
|-.|..|.|.|++..=-.|.|.|++|..++-
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~ 32 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKK 32 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCC
Confidence 5679999999987322345899999977664
No 81
>PRK14430 acylphosphatase; Provisional
Probab=20.31 E-value=96 Score=23.93 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.4
Q ss_pred cceeceEEEeeCCeeEEEeeCC
Q 044915 179 YMYCGIVQRITDGKAGVLFEGG 200 (238)
Q Consensus 179 ~~y~G~VQRvtdgkaaVLFeGg 200 (238)
++..|.|+-..||++-++++|-
T Consensus 30 lgl~G~VrN~~dGsVei~~qG~ 51 (92)
T PRK14430 30 LGLGGWVRNRADGTVEVMASGT 51 (92)
T ss_pred hCCEEEEEECCCCcEEEEEEcC
Confidence 3567999999999999999994
Done!