Query 044915
Match_columns 238
No_of_seqs 60 out of 62
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 13:54:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jz2_A SSL0352 protein; SH3-li 100.0 2.4E-39 8E-44 239.0 7.1 58 162-219 1-58 (66)
2 1qp2_A Protein (PSAE protein); 99.7 1.9E-18 6.3E-23 129.1 5.4 61 162-223 1-67 (70)
3 2e6z_A Transcription elongatio 95.2 0.026 8.8E-07 39.4 4.6 52 162-215 7-58 (59)
4 3sd4_A PHD finger protein 20; 95.2 0.048 1.6E-06 38.7 6.0 58 154-213 4-65 (69)
5 3p8b_B Transcription antitermi 91.7 0.42 1.4E-05 37.6 6.5 56 161-218 90-147 (152)
6 2e70_A Transcription elongatio 91.6 0.35 1.2E-05 35.8 5.5 50 163-216 18-67 (71)
7 3h8z_A FragIle X mental retard 91.4 0.46 1.6E-05 38.2 6.4 57 164-225 3-59 (128)
8 2eqm_A PHD finger protein 20-l 91.2 0.59 2E-05 35.0 6.4 64 153-216 10-75 (88)
9 1nz9_A Transcription antitermi 90.5 0.71 2.4E-05 31.2 5.8 51 163-215 5-57 (58)
10 1wjq_A KIAA1798 protein; MBT d 89.6 0.72 2.5E-05 36.1 5.9 44 154-199 7-50 (107)
11 2ckk_A KIN17; beta barrel, rib 87.9 1.8 6.2E-05 34.3 7.3 55 159-216 11-69 (127)
12 2jvv_A Transcription antitermi 86.3 1.6 5.6E-05 34.9 6.3 51 162-214 127-179 (181)
13 2biv_A SCML2 protein, sex COMB 83.4 1.5 5.1E-05 38.1 5.2 42 158-199 58-99 (243)
14 1jb0_E Photosystem 1 reaction 80.7 3.6 0.00012 31.1 5.7 56 165-220 3-72 (75)
15 2qqr_A JMJC domain-containing 80.3 2.1 7.1E-05 34.2 4.5 43 160-204 3-46 (118)
16 2biv_A SCML2 protein, sex COMB 79.0 4.2 0.00014 35.2 6.4 40 160-199 169-208 (243)
17 2r58_A Polycomb protein SCM; M 79.0 4.3 0.00015 35.7 6.6 40 160-199 141-180 (265)
18 4a4f_A SurviVal of motor neuro 78.2 13 0.00043 25.6 7.5 52 162-218 8-63 (64)
19 1wjr_A KIAA1617 protein; MBT d 73.0 2.4 8.1E-05 33.6 3.0 54 161-214 10-67 (127)
20 2equ_A PHD finger protein 20-l 71.2 12 0.00042 27.1 6.3 50 161-215 8-58 (74)
21 2r58_A Polycomb protein SCM; M 69.4 6.2 0.00021 34.7 5.2 42 158-199 30-71 (265)
22 2kr7_A FKBP-type peptidyl-prol 67.0 11 0.00038 29.7 5.7 56 162-219 93-148 (151)
23 2g3r_A Tumor suppressor P53-bi 64.9 11 0.00036 30.7 5.2 53 164-220 6-59 (123)
24 3p8d_A Medulloblastoma antigen 61.8 15 0.00052 26.6 5.1 51 160-215 4-55 (67)
25 2do3_A Transcription elongatio 60.6 11 0.00036 27.8 4.1 48 162-213 17-64 (69)
26 2kfw_A FKBP-type peptidyl-prol 58.2 5.6 0.00019 33.2 2.6 54 162-218 89-142 (196)
27 3f70_A Lethal(3)malignant brai 57.7 14 0.00047 34.8 5.4 39 162-200 153-191 (456)
28 2jkb_A Sialidase B; intramolec 57.5 9.8 0.00034 36.9 4.5 41 172-213 633-684 (686)
29 3cgm_A SLYD, peptidyl-prolyl C 57.5 18 0.00061 28.9 5.4 55 162-218 84-138 (158)
30 1oz2_A Lethal(3)malignant brai 57.4 18 0.00063 32.4 6.0 39 161-199 251-289 (331)
31 2k8i_A SLYD, peptidyl-prolyl C 56.9 16 0.00056 29.6 5.1 54 162-218 89-142 (171)
32 1g5v_A SurviVal motor neuron p 56.5 25 0.00085 26.2 5.7 50 161-215 9-62 (88)
33 3feo_A MBT domain-containing p 55.7 9.6 0.00033 35.6 4.0 38 163-200 156-193 (437)
34 2xhc_A Transcription antitermi 55.2 19 0.00066 32.7 5.8 51 162-214 298-350 (352)
35 2eqk_A Tudor domain-containing 53.0 32 0.0011 26.1 5.8 39 163-202 22-62 (85)
36 4dt4_A FKBP-type 16 kDa peptid 52.9 31 0.0011 28.1 6.2 56 162-219 112-167 (169)
37 1oz2_A Lethal(3)malignant brai 52.6 27 0.00094 31.3 6.3 47 160-206 146-194 (331)
38 1ix5_A FKBP; ppiase, isomerase 51.0 21 0.00073 28.0 4.8 48 162-216 103-150 (151)
39 1mhn_A SurviVal motor neuron p 49.6 45 0.0016 22.3 5.7 47 163-214 4-54 (59)
40 2wsc_E PSAE, PSI-E A, photosys 48.9 2.9 0.0001 34.7 -0.5 54 164-217 82-142 (143)
41 3h6z_A Polycomb protein SFMBT; 47.8 25 0.00087 33.0 5.5 41 162-202 156-196 (447)
42 3ut1_A Lethal(3)malignant brai 47.1 34 0.0011 30.7 6.0 39 161-199 246-284 (324)
43 4hcz_A PHD finger protein 1; p 46.0 43 0.0015 24.1 5.3 39 161-201 2-42 (58)
44 2lc4_A PILP protein; type IV p 43.0 35 0.0012 26.7 4.8 40 173-212 57-101 (111)
45 3ut1_A Lethal(3)malignant brai 41.3 32 0.0011 30.9 4.9 39 161-199 142-180 (324)
46 3feo_A MBT domain-containing p 38.9 36 0.0012 31.8 5.0 48 153-200 243-293 (437)
47 1ssf_A Transformation related 38.9 29 0.00098 29.2 3.9 38 164-202 10-48 (156)
48 2sli_A Intramolecular trans-si 36.3 40 0.0014 32.6 5.0 36 179-215 631-677 (679)
49 2l74_A Putative uncharacterize 35.1 62 0.0021 25.1 5.1 42 162-203 70-113 (145)
50 3h8z_A FragIle X mental retard 35.0 93 0.0032 24.7 6.2 61 161-223 59-124 (128)
51 3fdr_A Tudor and KH domain-con 33.6 96 0.0033 22.0 5.6 47 163-214 28-77 (94)
52 1ywu_A Hypothetical protein PA 33.3 73 0.0025 24.8 5.3 41 163-203 73-115 (149)
53 4eqp_A Thermonuclease; staphyl 32.9 63 0.0022 25.0 4.8 40 175-217 4-43 (143)
54 4b3f_X DNA-binding protein smu 32.6 45 0.0015 31.1 4.6 38 162-199 80-118 (646)
55 3j21_U 50S ribosomal protein L 32.3 46 0.0016 26.4 4.0 41 162-204 45-85 (121)
56 2wac_A CG7008-PA; unknown func 30.9 1.5E+02 0.0051 23.2 6.7 40 163-204 52-93 (218)
57 3qii_A PHD finger protein 20; 30.6 38 0.0013 25.7 3.1 51 161-216 20-71 (85)
58 2diq_A Tudor and KH domain-con 29.2 83 0.0028 23.0 4.7 46 163-213 33-81 (110)
59 2hqx_A P100 CO-activator tudor 28.4 1.5E+02 0.0052 24.1 6.6 41 163-205 66-108 (246)
60 1m1h_A Transcription antitermi 27.9 13 0.00043 32.3 0.0 51 162-214 194-246 (248)
61 3v2d_Y 50S ribosomal protein L 27.5 62 0.0021 25.3 3.9 41 162-204 6-46 (110)
62 2ldm_A Uncharacterized protein 33.5 13 0.00044 27.9 0.0 46 163-213 7-53 (81)
63 2zzd_A Thiocyanate hydrolase s 27.2 62 0.0021 26.1 3.9 63 154-218 28-106 (126)
64 3pnw_C Tudor domain-containing 26.9 1.6E+02 0.0055 20.9 5.8 48 163-215 18-69 (77)
65 2eqj_A Metal-response element- 26.7 51 0.0017 24.1 3.1 37 163-201 14-52 (66)
66 2ivw_A PILP pilot protein; lip 26.6 1.1E+02 0.0036 24.1 5.1 39 174-212 54-97 (113)
67 2zjr_R 50S ribosomal protein L 25.3 76 0.0026 24.8 4.0 41 162-204 15-55 (115)
68 2y4x_A PILP protein; biosynthe 25.1 1.4E+02 0.0047 22.4 5.3 49 162-210 39-92 (93)
69 3pr9_A FKBP-type peptidyl-prol 25.0 80 0.0027 25.2 4.2 48 163-217 103-150 (157)
70 3d0f_A Penicillin-binding 1 tr 24.7 85 0.0029 22.9 4.1 35 179-216 35-69 (106)
71 3f70_A Lethal(3)malignant brai 24.6 1.4E+02 0.0046 28.1 6.3 39 161-199 365-403 (456)
72 4av2_M PILP protein, type IV p 24.5 1E+02 0.0035 25.5 4.9 53 163-215 111-168 (181)
73 3gox_A Restriction endonucleas 24.5 1.3E+02 0.0044 26.1 5.7 55 162-218 11-66 (200)
74 2e5p_A Protein PHF1, PHD finge 24.5 1.6E+02 0.0055 21.8 5.4 39 161-201 8-48 (68)
75 2zkr_t 60S ribosomal protein L 24.1 71 0.0024 26.1 3.8 39 162-202 48-87 (145)
76 2xdp_A Lysine-specific demethy 23.9 46 0.0016 26.6 2.6 43 160-204 4-47 (123)
77 3iz5_Y 60S ribosomal protein L 23.0 79 0.0027 26.2 3.9 41 162-204 48-88 (150)
78 3pie_A 5'->3' exoribonuclease 22.9 71 0.0024 33.8 4.4 35 162-198 900-935 (1155)
79 3h6z_A Polycomb protein SFMBT; 22.8 1.4E+02 0.0049 27.9 6.1 39 161-199 375-413 (447)
80 1vq8_T 50S ribosomal protein L 22.5 84 0.0029 24.9 3.8 41 162-204 42-82 (120)
81 2d9t_A Tudor domain-containing 22.2 1.2E+02 0.004 21.5 4.3 48 163-215 10-61 (78)
82 2m0o_A PHD finger protein 1; t 21.9 2.6E+02 0.009 21.1 7.4 38 162-201 26-65 (79)
83 4a17_S RPL26, 60S ribosomal pr 21.0 1.1E+02 0.0039 24.8 4.4 40 163-204 49-88 (135)
84 2diu_A KIAA0430 protein; struc 20.8 95 0.0032 23.7 3.7 38 162-199 4-55 (96)
No 1
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=100.00 E-value=2.4e-39 Score=238.99 Aligned_cols=58 Identities=50% Similarity=0.934 Sum_probs=56.8
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcccC
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKG 219 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~g 219 (238)
||||||+|+|+||+|+||||+|+||||||||||||||||||||||||+|+|||+++++
T Consensus 1 ~ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~~~~ 58 (66)
T 2jz2_A 1 MIFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKPI 58 (66)
T ss_dssp CCCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEECCCC
T ss_pred CccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceecccc
Confidence 7999999999999999999999999999999999999999999999999999999876
No 2
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=99.73 E-value=1.9e-18 Score=129.09 Aligned_cols=61 Identities=25% Similarity=0.366 Sum_probs=57.1
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCe----eEEEeeCCCcceeEE--eeccchhhcccCCCCC
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGK----AGVLFEGGNWDRLIT--FRLDELERREKGPPGR 223 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgk----aaVLFeGgnWdKlvt--f~l~eLe~~~~gPPm~ 223 (238)
||.||+.|+|.+|.|.||.++|.||+|.+++ |+|+||++||++++| |.|+|||.++ .|+.+
T Consensus 1 Mi~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v~-~~~~k 67 (70)
T 1qp2_A 1 MVQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEVE-APKAK 67 (70)
T ss_dssp CCCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEECC-CCCSC
T ss_pred CcCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEec-cCccc
Confidence 8999999999999999999999999999999 999999999999999 9999999986 34443
No 3
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.21 E-value=0.026 Score=39.35 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=45.4
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhh
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELER 215 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~ 215 (238)
.+.||.+|+|++- +|-+|+|.|+.|...|+-|+..-.....-|++..++|+.
T Consensus 7 ~f~~GD~V~V~~G--pf~g~~G~V~evd~e~v~V~v~~fg~~tpvel~~~qv~K 58 (59)
T 2e6z_A 7 GFQPGDNVEVCEG--ELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRK 58 (59)
T ss_dssp SCCTTSEEEECSS--TTTTCEEEECCCBTTEEEEEECCSSCCSCEEEETTTEEE
T ss_pred cCCCCCEEEEeec--CCCCCEEEEEEEeCCEEEEEEEecCCCceEEEcHHHEEE
Confidence 3789999999864 799999999999999999999866667789999988864
No 4
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=95.20 E-value=0.048 Score=38.71 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCCCCCCCcccCCceEEEeCCCCcccceeceEEEe--eCCeeEEEeeC--CCcceeEEeeccch
Q 044915 154 KPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRI--TDGKAGVLFEG--GNWDRLITFRLDEL 213 (238)
Q Consensus 154 kp~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRv--tdgkaaVLFeG--gnWdKlvtf~l~eL 213 (238)
.|..+....+-+||-+-+.++.++. |...|..| .++++-|-|+| .+||-.+.+.-.+|
T Consensus 4 ~p~~~~~~~F~vGmkLEa~d~~~p~--~~AtV~~v~~~~~~~~VhfdGw~~~~D~W~~~dS~~i 65 (69)
T 3sd4_A 4 HPPNRRGISFEVGAQLEARDRLKNW--YPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDSPYL 65 (69)
T ss_dssp CCCCCTTCCCSTTCEEEEECTTSCE--EEEEEEEEETTTTEEEEEETTSCGGGCEEEETTCTTE
T ss_pred CCCCCCCCCcCCCCEEEEEECCCCc--cccEEEEEeccCCEEEEEeCCCCCCCCEEEcCCCCCe
Confidence 3455566679999999999999997 89999998 79999999998 77887776554444
No 5
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=91.74 E-value=0.42 Score=37.59 Aligned_cols=56 Identities=23% Similarity=0.157 Sum_probs=47.6
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeC--CeeEEEeeCCCcceeEEeeccchhhccc
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITD--GKAGVLFEGGNWDRLITFRLDELERREK 218 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtd--gkaaVLFeGgnWdKlvtf~l~eLe~~~~ 218 (238)
..+-+|+.|+|++ -+|-+|.|+|.+|.. ++|-|++.--.=.--|++..+.++.+++
T Consensus 90 ~~~~~Gd~VrI~~--Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~ 147 (152)
T 3p8b_B 90 SGLEPGDLVEVIA--GPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISK 147 (152)
T ss_dssp TTCCTTCEEEECS--STTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEEC
T ss_pred ccCCCCCEEEEee--ecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecc
Confidence 4578999999998 689999999999974 5788888876666789999999988765
No 6
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.57 E-value=0.35 Score=35.82 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=43.9
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhc
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERR 216 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~ 216 (238)
-|.|.+|+|.- -+|-+|-|+|-.++|..|-|-++.-| |.||+..+.|..+
T Consensus 18 ~liGktV~I~k--GpyKG~~GiVkd~t~~~~RVELhs~~--K~VtV~r~~l~~~ 67 (71)
T 2e70_A 18 ELIGQTVRISQ--GPYKGYIGVVKDATESTARVELHSTC--QTISVDRQRLTTV 67 (71)
T ss_dssp SSTTSEEEECS--STTTTCEEEEEEECSSCEEEEESSSC--CEEEECTTTEEEC
T ss_pred ccCCCEEEEec--cCCCCeEEEEEECCCCeEEEEecCCc--eEEEEEhhhcccc
Confidence 46799999975 46999999999999999999999886 9999999888554
No 7
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=91.38 E-value=0.46 Score=38.21 Aligned_cols=57 Identities=25% Similarity=0.536 Sum_probs=44.7
Q ss_pred cCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcccCCCCCCC
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNP 225 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~gPPm~NP 225 (238)
+-++.|-|..-+..||. |+|+.|.++.+-|-|++ +|.---++.++++ |-..||..++
T Consensus 3 ~~~~~VEV~~~~G~~y~--a~V~~v~~d~~~V~f~n-~w~~~~~vp~~~v--RlpP~~~~~~ 59 (128)
T 3h8z_A 3 FQGLPVEVRGSNGAFYK--GFVKDVHEDSVTIFFEN-NWQSERQIPFGDV--RLPPPADYNK 59 (128)
T ss_dssp TTTCEEEEECTTSCEEE--EEEEEECSSEEEEEETT-CTTCCEEEEGGGE--ECCCCC----
T ss_pred ccccEEEEecCCCCEEE--EEEEEEeCCcEEEEEcc-ccCcceEechhhE--EcCCCccccc
Confidence 56899999998888865 99999999999999986 7997778888888 4345555553
No 8
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=91.17 E-value=0.59 Score=35.03 Aligned_cols=64 Identities=19% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCCCCCCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC--CCcceeEEeeccchhhc
Q 044915 153 RKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG--GNWDRLITFRLDELERR 216 (238)
Q Consensus 153 ~kp~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG--gnWdKlvtf~l~eLe~~ 216 (238)
+.|.......+-+||-|-+.+..++.|.-.-.|-.+.+.++-|-|.| ..||--|...-.+|-.+
T Consensus 10 ~~~~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~ 75 (88)
T 2eqm_A 10 KKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 75 (88)
T ss_dssp TSCCSCSSCCCCSSCEEEEECTTSCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEECC
T ss_pred cCCCCCCcCcCCCCCEEEEEcCCCCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEecc
Confidence 45555556678999999999999998655555556668999999999 88999888776666443
No 9
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=90.45 E-value=0.71 Score=31.17 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=41.5
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeC--CeeEEEeeCCCcceeEEeeccchhh
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITD--GKAGVLFEGGNWDRLITFRLDELER 215 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtd--gkaaVLFeGgnWdKlvtf~l~eLe~ 215 (238)
+-+|..|+|++- +|-+|+|.|++|.. +++-|+++-=.-...|.+..++++.
T Consensus 5 ~~~Gd~V~V~~G--pf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 5 FREGDQVRVVSG--PFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp CCTTCEEEECSG--GGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred cCCCCEEEEeec--CCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence 568999999864 89999999999975 4799999886666777777777653
No 10
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=89.59 E-value=0.72 Score=36.10 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=39.9
Q ss_pred CCCCCCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 154 KPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 154 kp~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
|++++ ..+.+||-+-+.|++|+..-+.-.|.+|.+.++-|-|+|
T Consensus 7 ~~~p~--~~F~~GMKLEAvD~~~p~~icvATV~~v~g~rl~v~fDG 50 (107)
T 1wjq_A 7 GVKPP--HGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDG 50 (107)
T ss_dssp CCCCS--SSCCSSCEEEEECTTCTTCEEEEEEEEECSSCEEEECSS
T ss_pred ccCCc--ccCCCCCEEEEEcCCCCCcEEeEEEEEecCCEEEEEeCC
Confidence 55543 569999999999999999999999999999999999997
No 11
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=87.94 E-value=1.8 Score=34.26 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=42.9
Q ss_pred CCCcccCCceEEEeCCCCc--ccceeceEEEeeCCeeEEE-e-eCCCcceeEEeeccchhhc
Q 044915 159 EWPLLMPGMFAIVKNPNNP--FYMYCGIVQRITDGKAGVL-F-EGGNWDRLITFRLDELERR 216 (238)
Q Consensus 159 ~~~~ilPG~~v~V~n~~~~--y~~y~G~VQRvtdgkaaVL-F-eGgnWdKlvtf~l~eLe~~ 216 (238)
...-+.||-.|+|++-+.- ||.=.|.|+.|.++..+.+ + +.| ++|++.-++||-+
T Consensus 11 ~~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~~c~V~l~~~g---~~v~v~q~~LETV 69 (127)
T 2ckk_A 11 TDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSG---DKLKLDQTHLETV 69 (127)
T ss_dssp CSCCCCTTBEEEECCSTTCGGGTTCEEEEEEEETTTEEEEEETTTC---CEEEEEGGGEEEC
T ss_pred CCCcccCCeEEEEEEccCCCcccCceEEEEEecCCCeEEEEECCCC---CEEEEchHHcEEe
Confidence 4456899999999998644 9999999999975555544 4 444 6679999999876
No 12
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=86.30 E-value=1.6 Score=34.94 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=38.8
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeC--CeeEEEeeCCCcceeEEeeccchh
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITD--GKAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtd--gkaaVLFeGgnWdKlvtf~l~eLe 214 (238)
.+-+|..|+|++ -+|-+|+|.|++|.+ +|+-|+++-=+=..-|++..+++|
T Consensus 127 ~~~~Gd~V~V~~--GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~vel~~~qve 179 (181)
T 2jvv_A 127 LFEPGEMVRVND--GPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 (181)
T ss_dssp CCCTTEEEEECS--STTTTEEEEEEEEETTTTEEEEEEEETTEEEEEEECTTTEE
T ss_pred cCCCCCEEEEec--cCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEEECHHHEE
Confidence 467999999996 689999999999974 478888887444455566655554
No 13
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=83.39 E-value=1.5 Score=38.05 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=38.9
Q ss_pred CCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 158 PEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 158 p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
+....+-+||-+-+.||.|++--+.-.|.+|.++++-|-|+|
T Consensus 58 ~~~~~f~vGmKLEa~D~~~~~~~~vATV~~v~g~~l~l~~dG 99 (243)
T 2biv_A 58 PPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDG 99 (243)
T ss_dssp CCCCCCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETT
T ss_pred CCcccccCCCEEEEecCCCCCcEEEEEEEEEeCCEEEEEECC
Confidence 445779999999999999999999999999999999999998
No 14
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=80.66 E-value=3.6 Score=31.10 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=44.4
Q ss_pred CCceEEEeCCCCcccceeceEEEeeCC-----eeEEEeeCCCc-------cee--EEeeccchhhcccCC
Q 044915 165 PGMFAIVKNPNNPFYMYCGIVQRITDG-----KAGVLFEGGNW-------DRL--ITFRLDELERREKGP 220 (238)
Q Consensus 165 PG~~v~V~n~~~~y~~y~G~VQRvtdg-----kaaVLFeGgnW-------dKl--vtf~l~eLe~~~~gP 220 (238)
-|+.|+|.-|.+-+|-=.|.|--|... -+-|.|+-=|. .-+ =-|-++||+.+++.+
T Consensus 3 RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVNY~g~sG~~~G~nTNnfa~~El~~v~~~~ 72 (75)
T 1jb0_E 3 RGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEVAPPK 72 (75)
T ss_dssp TTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCCSCSSTTCCCCCCEEEECGGGEEECC---
T ss_pred CCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeecccccccccccccccccCHhHhhccccCC
Confidence 489999999999999999999999775 25889998888 333 348899999887443
No 15
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=80.27 E-value=2.1 Score=34.21 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=36.5
Q ss_pred CCcccCCceEEEeCCCCcccceeceEEEeeCC-eeEEEeeCCCcce
Q 044915 160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDG-KAGVLFEGGNWDR 204 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdg-kaaVLFeGgnWdK 204 (238)
++.|-.|..|+.+|.|.-|| .|.|-+++.- -.-|-|..|+|..
T Consensus 3 ~~~v~vGq~V~akh~ngryy--~~~V~~~~~~~~y~V~F~DgS~s~ 46 (118)
T 2qqr_A 3 MQSITAGQKVISKHKNGRFY--QCEVVRLTTETFYEVNFDDGSFSD 46 (118)
T ss_dssp SSCCCTTCEEEEECTTSSEE--EEEEEEEEEEEEEEEEETTSCEEE
T ss_pred cceeccCCEEEEECCCCCEE--eEEEEEEeeEEEEEEEcCCCCccC
Confidence 45578899999999999998 8999888654 3568899999987
No 16
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=79.01 E-value=4.2 Score=35.22 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=37.6
Q ss_pred CCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
.-.+.+||-+-+.|++|+..-+...|.+|.++++-|.|+|
T Consensus 169 ~~~F~~GmKLEavD~~~p~~icvATV~~v~g~rl~v~fDg 208 (243)
T 2biv_A 169 LNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDG 208 (243)
T ss_dssp SCCCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETT
T ss_pred cccccCCCEEEEEccCCCCeEEEEEEEEecCCEEEEEECC
Confidence 3468999999999999999999999999999999999987
No 17
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=78.98 E-value=4.3 Score=35.75 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=37.5
Q ss_pred CCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
.-.+.+||-+.+.|+.|+..-+...|.+|.++++-|-|+|
T Consensus 141 ~~~F~vGMKLEavD~~np~~icvATV~~v~g~rl~v~fDG 180 (265)
T 2r58_A 141 ENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDG 180 (265)
T ss_dssp SCCCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETT
T ss_pred ccccccCcEEEeccCCCCCCEEEEEEEEecCCEEEEEeCC
Confidence 3459999999999999999999999999999999999986
No 18
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=78.17 E-value=13 Score=25.63 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=39.2
Q ss_pred cccCCceEEEeCC-CCcccceeceEEEeeC--CeeEEEeeC-CCcceeEEeeccchhhccc
Q 044915 162 LLMPGMFAIVKNP-NNPFYMYCGIVQRITD--GKAGVLFEG-GNWDRLITFRLDELERREK 218 (238)
Q Consensus 162 ~ilPG~~v~V~n~-~~~y~~y~G~VQRvtd--gkaaVLFeG-gnWdKlvtf~l~eLe~~~~ 218 (238)
..-+|+.+..+=. ++.| |.+.|+.|.+ +.+-|.|.+ ||=+ +..+++|..++.
T Consensus 8 ~~~vGd~c~A~~s~Dg~w--YrA~I~~v~~~~~~~~V~fvdYGn~e---~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQC--YEAEIEEIDEENGTAAITFAGYGNAE---VTPLLNLKPVEE 63 (64)
T ss_dssp CCCTTCEEEEECTTTSSE--EEEEEEEEETTTTEEEEEETTTTEEE---EEEGGGEECCSC
T ss_pred CCCCCCEEEEEECCCCCE--EEEEEEEEcCCCCEEEEEEEecCCEE---EEeHHHcEeCCC
Confidence 3578999999964 5544 6799999995 899999998 8744 346777765543
No 19
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=72.98 E-value=2.4 Score=33.63 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=44.4
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC-C---CcceeEEeeccchh
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG-G---NWDRLITFRLDELE 214 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG-g---nWdKlvtf~l~eLe 214 (238)
-.|-+||-+-+.|++|+..-..-.|.+|.++++-|-|+| . ..|-.+.+.-.+|-
T Consensus 10 ~~f~~GmKLEa~D~~~p~~~~vAtV~~v~g~rl~l~~dG~~~~~~~D~W~~~~s~~I~ 67 (127)
T 1wjr_A 10 DLITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLR 67 (127)
T ss_dssp HHCCTTCEEEEECSSCSSCEEEEECCCEETTEEEECBTTCSSCCSSCEEEETTCSSCB
T ss_pred hhccCCCEeEEecCCCCCcEEEEEEeeeeCCEEEEEecCCCCCCCCCEeEeCCCCCcc
Confidence 468899999999999999989999999999999999998 2 35555555555553
No 20
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.25 E-value=12 Score=27.14 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=38.4
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeCCCcceeEEeeccchhh
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEGGNWDRLITFRLDELER 215 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeGgnWdKlvtf~l~eLe~ 215 (238)
..+-.|+.|.-+=.++.| |.+.|.+|++ |++.|.|.++| .-|.+.++|..
T Consensus 8 ~~~kvGd~clA~wsDg~~--Y~A~I~~v~~~~~~~V~f~Dyn---~e~v~~~~lrp 58 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRY--YPAKIEAINKEGTFTVQFYDGV---IRCLKRMHIKA 58 (74)
T ss_dssp CCCCTTCEEEEECSSSSE--EEEEEEEESTTSSEEEEETTSC---EEEECGGGEEC
T ss_pred CCCCCCCEEEEECCCCCE--EEEEEEEECCCCEEEEEEecCC---eEEecHHHCee
Confidence 446789999999886666 5799999987 89999999983 34446666643
No 21
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=69.44 E-value=6.2 Score=34.75 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=38.5
Q ss_pred CCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 158 PEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 158 p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
+....+-.||-+-+.||.|+..-+...|..|.+.++-|-|+|
T Consensus 30 ~~~~~F~vGMKLEavDp~~~~~icvATV~~v~g~~l~l~~DG 71 (265)
T 2r58_A 30 PPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDG 71 (265)
T ss_dssp CCCCCCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETT
T ss_pred CCccccccCCEeEEecCCCCCCEEEEEEEEEeCCEEEEEeCC
Confidence 335679999999999999999989999999999999999997
No 22
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=67.01 E-value=11 Score=29.65 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=45.4
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcccC
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKG 219 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~g 219 (238)
-+-+||.+...+++- ..+.|.|..|+|++|-|=|--===.|=++|.++=++.++..
T Consensus 93 ~~~~G~~~~~~~~~G--~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v~v~~v~~at 148 (151)
T 2kr7_A 93 ELEKGMSVFGQTEDN--QTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFREVS 148 (151)
T ss_dssp CCCTTCEEEEEETTT--EEEEEEEEEECSSEEEEEECCTTSCCCEEEEEEEEEEECCC
T ss_pred CCccCCEEEEECCCC--CEEEEEEEEECCCEEEEECCCcCCCCEEEEEEEEEEeecCC
Confidence 478999999999887 45789999999999999887655667888988777766543
No 23
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=64.92 E-value=11 Score=30.74 Aligned_cols=53 Identities=23% Similarity=0.390 Sum_probs=38.1
Q ss_pred cCCceEEEeCCCCcccceeceEEE-eeCCeeEEEeeCCCcceeEEeeccchhhcccCC
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQR-ITDGKAGVLFEGGNWDRLITFRLDELERREKGP 220 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQR-vtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~gP 220 (238)
+-|..|..+=.+|.|| |-|.|+| ..++|--|+|+.|.=- |.+.+++-..+.-|
T Consensus 6 ~~G~rV~AkWsdn~~y-YpG~V~~~~~~~ky~V~FdDg~~~---~v~~k~iiv~d~ip 59 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYF-YSGKITRDVGAGKYKLLFDDGYEC---DVLGKDILLCDPIP 59 (123)
T ss_dssp CTTCEEEEECTTTCCE-EEEEEEEEEETTEEEEEETTSCEE---EEEGGGEECCSSCC
T ss_pred ccceEEEEEeccCCcC-cccEEEEeccCCeEEEEEcCCCee---EeecceEEEecccC
Confidence 4578888888888655 7899998 7789999999998532 33355554444444
No 24
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=61.78 E-value=15 Score=26.58 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=38.2
Q ss_pred CCcccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeCCCcceeEEeeccchhh
Q 044915 160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEGGNWDRLITFRLDELER 215 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeGgnWdKlvtf~l~eLe~ 215 (238)
+|..-.|+.|...=-+.-| |.+.|+.|++ +..-|+|.+|+ .-|.++++|..
T Consensus 4 ~~~~~vGd~vmArW~D~~y--YpA~I~si~~~~~Y~V~F~dG~---~etvk~~~ikp 55 (67)
T 3p8d_A 4 SSEFQINEQVLACWSDCRF--YPAKVTAVNKDGTYTVKFYDGV---VQTVKHIHVKA 55 (67)
T ss_dssp -CCCCTTCEEEEECTTSCE--EEEEEEEECTTSEEEEEETTSC---EEEEEGGGEEE
T ss_pred CcccccCCEEEEEcCCCCE--eeEEEEEECCCCeEEEEEeCCc---eEEEeHHHccc
Confidence 4567789999888755556 5699999998 69999999965 44556666644
No 25
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=60.63 E-value=11 Score=27.77 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=35.2
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccch
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDEL 213 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eL 213 (238)
-+-+|+-|+|++- -|-+-+|.|-||.|+.|-|+=.--+ +=|+..-+||
T Consensus 17 ~F~~GDHVkVi~G--~~~getGlVV~v~~d~v~v~SD~t~--~Ei~V~~~dL 64 (69)
T 2do3_A 17 YFKMGDHVKVIAG--RFEGDTGLIVRVEENFVILFSDLTM--HELKVLPRDL 64 (69)
T ss_dssp SCCTTCEEEESSS--TTTTCEEEEEEECSSCEEEEESSSC--SEEEECTTSE
T ss_pred eccCCCeEEEecc--EEcCceEEEEEEeCCEEEEEeCCCC--CEEEEEhHHh
Confidence 4789999999996 8999999999999887766544332 2344444444
No 26
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=58.18 E-value=5.6 Score=33.22 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=42.9
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhccc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREK 218 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~ 218 (238)
-+-|||.|.+.+++- .+.+.|..|++++|-|=|--===.|=++|.++=++.++.
T Consensus 89 ~~~~G~~~~~~~~~G---~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr~a 142 (196)
T 2kfw_A 89 ELQVGMRFLAETDQG---PVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREA 142 (196)
T ss_dssp CCCTTCEEEEEETTE---EEEEEBCCCCSSSEEECCCCTTSCCCCEEEEEECCCBCC
T ss_pred CcccCCEEEEECCCC---cEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEeecC
Confidence 478999999998876 688999999999998877554456788888877666654
No 27
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=57.72 E-value=14 Score=34.79 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=36.1
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCC
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGG 200 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGg 200 (238)
.+..||-|-+.|+.+++.-..-.|..|.+||+-|.|+|.
T Consensus 153 ~F~~GmkLE~vD~~~~~~~~vAtV~~v~g~rl~l~~~~~ 191 (456)
T 3f70_A 153 PFRQGMRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDG 191 (456)
T ss_dssp SSCTTCEEEEECTTCTTCEEEEEEEEEETTEEEEEECC-
T ss_pred CCCCCCEEEEECCCCCcceEEEEEEEEECCEEEEEEcCC
Confidence 489999999999999999889999999999999999974
No 28
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Probab=57.54 E-value=9.8 Score=36.88 Aligned_cols=41 Identities=27% Similarity=0.550 Sum_probs=26.9
Q ss_pred eCCCCcccceeceEEEeeCCeeEEEeeCC-Ccc----------eeEEeeccch
Q 044915 172 KNPNNPFYMYCGIVQRITDGKAGVLFEGG-NWD----------RLITFRLDEL 213 (238)
Q Consensus 172 ~n~~~~y~~y~G~VQRvtdgkaaVLFeGg-nWd----------Klvtf~l~eL 213 (238)
.++.+..+.|..++ ...||+++|++|+| +|. +.+.|.+++|
T Consensus 633 i~~~~~~~~Ys~l~-~~~DG~i~ilye~g~tW~~~~~~~~~~I~~~rf~~~wl 684 (686)
T 2jkb_A 633 IDLPSYGYAYSAIT-ELPNHHIGVLFEKYDSWSRNELHLSNVVQYIDLEINDL 684 (686)
T ss_dssp SSCTTSBCCSEEEE-ECTTSCEEEEEECSCSSCTTSCSCSSCEEEEEECHHHH
T ss_pred ecCCCCCccccEEE-EeCcCEEEEEEeCCCcccccccccCCceEEEEECHHHh
Confidence 34444335565544 46899999999986 674 4566776666
No 29
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=57.45 E-value=18 Score=28.92 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=42.4
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhccc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREK 218 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~ 218 (238)
-+-|||.+...+++. ..+.|.|..|+|+++-|=|---==.|-++|.++=++.++.
T Consensus 84 ~~~~G~~~~~~~~~G--~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev~~v~~a 138 (158)
T 3cgm_A 84 EVVPGAQFYAQDMEG--NPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREA 138 (158)
T ss_dssp CCCTTCEEEEEETTT--EEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEEEC
T ss_pred CCccCCEEEEECCCC--CEEEEEEEEECCCEEEEeCCccccCCEEEEEEEEEEeecC
Confidence 478999999998875 4567899999999988866544445888888876666543
No 30
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=57.42 E-value=18 Score=32.37 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=37.2
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
..+..||-+-+.|+.|++.-..-.|.+|.++++-|.|+|
T Consensus 251 ~~F~~gmKLEavD~~~p~~ic~AtV~~v~~~~l~v~fDg 289 (331)
T 1oz2_A 251 HSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDG 289 (331)
T ss_dssp CCCCTTCEEEEECSSSTTCEEEEEEEEECSSEEEEEETT
T ss_pred cccccCceeEeecccCCCcEEeeEEEEEcCCEEEEEeCC
Confidence 478999999999999999999999999999999999997
No 31
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=56.87 E-value=16 Score=29.58 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=42.6
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhccc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREK 218 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~ 218 (238)
-+-|||.+.+.+++-. +.+.|..|++++|-|=|--===.|=++|.++=++.++.
T Consensus 89 ~~~~G~~~~~~~~~G~---~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~~a 142 (171)
T 2k8i_A 89 ELQVGMRFLAETDQGP---VPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREA 142 (171)
T ss_dssp CCCTTCEEEEEETTEE---EEEEEEEECSSEEEEESCCSSCCCEEEEEEEEEEEEEC
T ss_pred CccCCcEEEEECCCCc---EEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEeccC
Confidence 4789999999998862 68999999999998877554456788888876666544
No 32
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=56.46 E-value=25 Score=26.20 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=38.2
Q ss_pred CcccCCceEEEeCC-CCcccceeceEEEeeC--CeeEEEeeC-CCcceeEEeeccchhh
Q 044915 161 PLLMPGMFAIVKNP-NNPFYMYCGIVQRITD--GKAGVLFEG-GNWDRLITFRLDELER 215 (238)
Q Consensus 161 ~~ilPG~~v~V~n~-~~~y~~y~G~VQRvtd--gkaaVLFeG-gnWdKlvtf~l~eLe~ 215 (238)
...-+|+.+..+=. ++.| |.+.|+.|.. +++.|.|.+ ||=+ +..+++|..
T Consensus 9 ~~~kvGd~C~A~ys~Dg~w--YrA~I~~i~~~~~~~~V~fiDYGN~E---~V~~~~Lrp 62 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCI--YPATIASIDFKRETCVVVYTGYGNRE---EQNLSDLLS 62 (88)
T ss_dssp CCCCSSCEEEEECTTTCCE--EEEEEEEEETTTTEEEEEETTTCCEE---EEEGGGCBC
T ss_pred CCCCCCCEEEEEECCCCCE--EEEEEEEecCCCCEEEEEEecCCCEE---EEcHHHccc
Confidence 35678999999865 5554 6799999985 899999998 7755 456777743
No 33
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=55.70 E-value=9.6 Score=35.57 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=36.3
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCC
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGG 200 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGg 200 (238)
|-+||.|-|.|++++.--.--.|+.|.++|+-+.|+|.
T Consensus 156 F~~GmkLEv~d~~~~~~~~vAtV~~v~G~rl~Lry~g~ 193 (437)
T 3feo_A 156 FKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEES 193 (437)
T ss_dssp CCTTEEEEEEETTEEEEEEEEEEEEEETTEEEEEESSC
T ss_pred CCCCCEEEEecCCCCcceEEEEEEEEECCEEEEEEeCC
Confidence 99999999999999998888999999999999999996
No 34
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=55.23 E-value=19 Score=32.68 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=40.3
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeC--CeeEEEeeCCCcceeEEeeccchh
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITD--GKAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtd--gkaaVLFeGgnWdKlvtf~l~eLe 214 (238)
.+-+|..|+|++ -+|-+|+|.|++|.. +|+-|+++-=+=...|.+..+++|
T Consensus 298 ~f~~Gd~VrV~~--GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qVe 350 (352)
T 2xhc_A 298 GFKVGDMVKIIS--GPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVE 350 (352)
T ss_dssp CCCTTCEEEECS--STTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGEE
T ss_pred cCCCCCEEEEec--cCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHEE
Confidence 467999999996 589999999999975 479998887444566777766665
No 35
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.97 E-value=32 Score=26.13 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=31.6
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeC-CCc
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEG-GNW 202 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeG-gnW 202 (238)
.-.||.|.++=+++- -.|.|+|-||.+ ++|-|+|=. ||=
T Consensus 22 ~k~g~~vaak~~d~n-~WyRakV~~v~~~~~veVl~~DyGn~ 62 (85)
T 2eqk_A 22 WENDMHCAVKIQDKN-QWRRGQIIRMVTDTLVEVLLYDVGVE 62 (85)
T ss_dssp CCSSCEEEEECSSSC-CEEEEEEEEECSSSEEEEECTTTCCE
T ss_pred ccCCCEEEEEeCCCC-eEEEEEEEEecCCCeEEEEEEccCCE
Confidence 457999999977654 678899999876 999999977 763
No 36
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=52.95 E-value=31 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=43.3
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcccC
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKG 219 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~g 219 (238)
.+-+||.|.+.+++-. .+.|.|..|+|++|-|=|--===.|=++|.++=++.++..
T Consensus 112 ~~~~G~~~~~~~~~G~--~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr~At 167 (169)
T 4dt4_A 112 EPEIGAIMLFTAMDGS--EMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPAL 167 (169)
T ss_dssp CCCTTCEEEEECTTSC--EEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEESCCC
T ss_pred CCCCCcEEEEECCCCC--EEEEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEeeCC
Confidence 3678999999998753 5778999999999988765544467788888777766543
No 37
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=52.56 E-value=27 Score=31.25 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=40.4
Q ss_pred CCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC--CCcceeE
Q 044915 160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG--GNWDRLI 206 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG--gnWdKlv 206 (238)
...+-+||-+-+.||.|+.--+.-.|.+|.++++-|-|+| +.+|-.+
T Consensus 146 ~~~F~vGmKLEavD~~np~~icvATV~~v~g~r~~v~~Dg~~~~~D~w~ 194 (331)
T 1oz2_A 146 PLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWC 194 (331)
T ss_dssp CTTCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEE
T ss_pred ccccccccEEEeccCCCCCcEEEEEEEEeeCCEEEEEeCCCCCccCEEE
Confidence 4569999999999999999999999999999999999998 3344333
No 38
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=50.99 E-value=21 Score=27.98 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=39.3
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERR 216 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~ 216 (238)
.+-|||.|.+.+ +.|.|..|+|+++-|-|-.--=.|=++|.++=++.+
T Consensus 103 ~~~~G~~~~~~~-------~~~~V~~v~~~~v~vD~NHPLAG~~L~F~vev~~v~ 150 (151)
T 1ix5_A 103 EPEEGMVILAEG-------IPATITEVTDNEVTLDFNHELAGKDLVFTIKIIEVV 150 (151)
T ss_dssp CCCTTEEEESSS-------CEEEEEEEETTEEEEECCCSSTTCCEEEECCBCCCB
T ss_pred cccccCEEEECC-------eEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEEe
Confidence 367899998776 789999999999999888777778899988765543
No 39
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=49.64 E-value=45 Score=22.28 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=36.2
Q ss_pred ccCCceEEEeCC-CCcccceeceEEEeeC--CeeEEEeeC-CCcceeEEeeccchh
Q 044915 163 LMPGMFAIVKNP-NNPFYMYCGIVQRITD--GKAGVLFEG-GNWDRLITFRLDELE 214 (238)
Q Consensus 163 ilPG~~v~V~n~-~~~y~~y~G~VQRvtd--gkaaVLFeG-gnWdKlvtf~l~eLe 214 (238)
+-+|+.+..+=. ++.| |.+.|+.|.. +++-|.|.+ ||-. +..+++|.
T Consensus 4 ~~~G~~c~A~~s~Dg~w--YrA~I~~i~~~~~~~~V~f~DYGn~e---~v~~~~Lr 54 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCI--YPATIASIDFKRETCVVVYTGYGNRE---EQNLSDLL 54 (59)
T ss_dssp CCTTCEEEEECTTTSCE--EEEEEEEEETTTTEEEEEETTTTEEE---EEEGGGCB
T ss_pred CCcCCEEEEEECCCCCE--EEEEEEEEcCCCCEEEEEEEcCCCEE---EEcHHHee
Confidence 457888888854 4554 7899999985 899999999 8864 45677774
No 40
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E* 2wsf_E* 2o01_E* 3lw5_E*
Probab=48.85 E-value=2.9 Score=34.66 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=44.5
Q ss_pred cCCceEEEeCCCCcccceeceEEEeeCC-----eeEEEeeCCCcceeEE--eeccchhhcc
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQRITDG-----KAGVLFEGGNWDRLIT--FRLDELERRE 217 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQRvtdg-----kaaVLFeGgnWdKlvt--f~l~eLe~~~ 217 (238)
--|+.|+|.-+.+-+|-=.|.|--|... -+-|.|+-=|+.-+-| |-++||+.++
T Consensus 82 ~RGskVrIlR~ESYWyn~vGtVvsVDqs~girYPVvVRF~KVNYaGvnTNNfA~dEleev~ 142 (143)
T 2wsc_E 82 KRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVA 142 (143)
T ss_dssp CSSSCBCCCSSSSTTTTSCBBCCCCCCSSCCSCCCBCBCSCCCSSSCCCCBCCSSCCCCCC
T ss_pred CCCCEeEEccccceeecCcceEEEEecCCCccccEEEEeeeecccccccccccHHHHhhhc
Confidence 4599999999999999999999888765 2568898888776665 7888888764
No 41
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=47.78 E-value=25 Score=32.95 Aligned_cols=41 Identities=7% Similarity=-0.025 Sum_probs=38.3
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNW 202 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnW 202 (238)
.+-.||-+-+.|+.|++--..-.|..|.+++.-|.|+++.-
T Consensus 156 ~F~~GmkLE~vD~~~~~~i~vAtV~~v~g~rl~l~~~d~~~ 196 (447)
T 3h6z_A 156 RFRLGLNLECVDKDRISQVRLATVTKIVGDRLFLRYFDSDD 196 (447)
T ss_dssp SSCTTCEEEEECTTCTTEEEEEEEEEEETTEEEEEETTCSC
T ss_pred ccCCCCEEEEEcCCCCccEEEEEEEEEECCcEEEEEECCCC
Confidence 59999999999999999999999999999999999988743
No 42
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=47.07 E-value=34 Score=30.71 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=37.1
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
..+-+||-+-+.|+.|+..-....|.+|.++++-|-|+|
T Consensus 246 ~~F~~gmkLEAvD~~~p~licvATV~~v~g~~l~v~fDg 284 (324)
T 3ut1_A 246 HGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDG 284 (324)
T ss_dssp CCCCTTCEEEEECSSSTTCEEEEEEEEECSSEEEEEETT
T ss_pred ccCCCCCeeeccCCCCCCceeEEEEEEecCCEEEEEeCC
Confidence 468999999999999999999999999999999999987
No 43
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=45.97 E-value=43 Score=24.07 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=33.2
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCC--eeEEEeeCCC
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDG--KAGVLFEGGN 201 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdg--kaaVLFeGgn 201 (238)
|.+-+|.-|.+..-+-.|| -|.|++|... +.-|.||.+.
T Consensus 2 ~~f~~GedVLarwsDG~fY--lGtI~~V~~~~~~clV~F~D~s 42 (58)
T 4hcz_A 2 PRLWEGQDVLARWTDGLLY--LGTIKKVDSAREVCLVQFEDDS 42 (58)
T ss_dssp CSCCTTCEEEEECTTSCEE--EEEEEEEETTTTEEEEEETTSC
T ss_pred CccccCCEEEEEecCCCEE--eEEEEEEecCCCEEEEEEcCCC
Confidence 5678999999999999996 5999998654 7999999875
No 44
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=42.97 E-value=35 Score=26.75 Aligned_cols=40 Identities=33% Similarity=0.524 Sum_probs=28.1
Q ss_pred CCCCcccceeceEEEeeCCeeEEE---eeC-CCc-ceeEEeeccc
Q 044915 173 NPNNPFYMYCGIVQRITDGKAGVL---FEG-GNW-DRLITFRLDE 212 (238)
Q Consensus 173 n~~~~y~~y~G~VQRvtdgkaaVL---FeG-gnW-dKlvtf~l~e 212 (238)
-+.|--=...|.|.+|++.++-|. -.| |+| .+-+|+.|.+
T Consensus 57 k~G~ylG~n~GrI~~It~~~I~l~E~v~Dg~G~W~eR~~~L~L~~ 101 (111)
T 2lc4_A 57 RVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTLKE 101 (111)
T ss_dssp ETTCEETTTTEEEEEECSSEEEEEEEEECSSSCEEEEEEEEEBCC
T ss_pred ccCCEeccCCCEEEEEeCCeEEEEEEEECCCCCEEEeeeEEEeCC
Confidence 333333345689999999998873 444 999 6778888754
No 45
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=41.29 E-value=32 Score=30.85 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=36.7
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
-.+-.||-+-+.||.|+..-.--.|.+|.+++.-|-|+|
T Consensus 142 ~~F~vGMKLEavDp~~p~~icvATV~~V~g~~l~v~~Dg 180 (324)
T 3ut1_A 142 SGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDN 180 (324)
T ss_dssp CSCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETT
T ss_pred cccccCCEEEEecCCCCCcEEEEEEEEEECCEEEEEECC
Confidence 469999999999999999989999999999999999987
No 46
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=38.92 E-value=36 Score=31.75 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=39.3
Q ss_pred CCCCCCCCCc--ccCCceEEEeCCCCcccceeceEEEee-CCeeEEEeeCC
Q 044915 153 RKPKPPEWPL--LMPGMFAIVKNPNNPFYMYCGIVQRIT-DGKAGVLFEGG 200 (238)
Q Consensus 153 ~kp~~p~~~~--ilPG~~v~V~n~~~~y~~y~G~VQRvt-dgkaaVLFeGg 200 (238)
++++....+. +-.||-+-++||.|+..-....|.+|. +|+.-|-|+|-
T Consensus 243 ~~~~~~~~~~~~F~~GMKLEavDp~~p~~icvATV~~v~~~g~l~l~~Dg~ 293 (437)
T 3feo_A 243 AKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGIDGS 293 (437)
T ss_dssp CCCCCCCCSSSCCCTTCEEEEEETTEEEEEEEEEEEEECGGGEEEEEETTC
T ss_pred ccccccCCCccccccCCEEEEEcCCCCceEEEEEEEEEccCCEEEEEeCCC
Confidence 3444433444 999999999999999999999999998 58888999984
No 47
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=38.88 E-value=29 Score=29.16 Aligned_cols=38 Identities=29% Similarity=0.542 Sum_probs=31.5
Q ss_pred cCCceEEEeCCCCcccceeceEEEee-CCeeEEEeeCCCc
Q 044915 164 MPGMFAIVKNPNNPFYMYCGIVQRIT-DGKAGVLFEGGNW 202 (238)
Q Consensus 164 lPG~~v~V~n~~~~y~~y~G~VQRvt-dgkaaVLFeGgnW 202 (238)
+-|.-|.-+=.+|-|| |-|.|+|+. +++--|+|+.|.=
T Consensus 10 ~iG~rVfArWsd~~yy-YpG~V~~~~~~~~Y~V~FdDG~~ 48 (156)
T 1ssf_A 10 FVGLRVVAKWSSNGYF-YSGKITRDVGAGKYKLLFDDGYE 48 (156)
T ss_dssp STTCEEEECSSCSSEE-EEEEEEECCTTTEEEEECTTSCE
T ss_pred hhccEEEEEcCCCCcc-cccEEEEeccCCEEEEEEcCCCe
Confidence 5688888888888887 789999875 5679999999974
No 48
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A*
Probab=36.26 E-value=40 Score=32.63 Aligned_cols=36 Identities=28% Similarity=0.695 Sum_probs=26.4
Q ss_pred cceeceEEEeeCCeeEEEeeCC-Cc----------ceeEEeeccchhh
Q 044915 179 YMYCGIVQRITDGKAGVLFEGG-NW----------DRLITFRLDELER 215 (238)
Q Consensus 179 ~~y~G~VQRvtdgkaaVLFeGg-nW----------dKlvtf~l~eLe~ 215 (238)
+.|.-+ ....||++++++|.| +| .+++.|.+++|+.
T Consensus 631 ~~Ys~L-~~~~DG~l~llye~g~tw~r~~~~~~~~I~~~~f~l~~L~~ 677 (679)
T 2sli_A 631 YSYSCL-AELPDGQVGLLYEKYDSWSRNELHLKDILKFEKYSISELTG 677 (679)
T ss_dssp CCCEEE-EECSSSCEEEEEECSCSSCTTSCSCSSCEEEEEECHHHHTT
T ss_pred ccCceE-EEeCCCEEEEEEECCCcccccccccCceEEEEEEcHHHHhc
Confidence 344433 456899999999987 57 3678888888854
No 49
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=35.06 E-value=62 Score=25.08 Aligned_cols=42 Identities=12% Similarity=-0.140 Sum_probs=31.0
Q ss_pred cccCCceEEEeCC--CCcccceeceEEEeeCCeeEEEeeCCCcc
Q 044915 162 LLMPGMFAIVKNP--NNPFYMYCGIVQRITDGKAGVLFEGGNWD 203 (238)
Q Consensus 162 ~ilPG~~v~V~n~--~~~y~~y~G~VQRvtdgkaaVLFeGgnWd 203 (238)
.+-+|..|.|.=+ .++.+-+.+.|.|+.++.+++-|..=..|
T Consensus 70 ~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~~~~gl~f~~id~d 113 (145)
T 2l74_A 70 NGDPQRPFEARLYLGLDVLIRMEISLAWARDGLLGFECQHIDLD 113 (145)
T ss_dssp CCCTTSCEEEEEECSSSCEEEEEEEEEEEETTEEEEEEEEECHH
T ss_pred CCCCCCEEEEEEEcCCCCeEEEEEEEEEEcCCEEEEEEEECCHH
Confidence 3667888877422 13457899999999999999999864433
No 50
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=35.04 E-value=93 Score=24.73 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=42.8
Q ss_pred CcccCCceEEEeCCCC---cccceeceEEEeeCCeeEEEeeC--CCcceeEEeeccchhhcccCCCCC
Q 044915 161 PLLMPGMFAIVKNPNN---PFYMYCGIVQRITDGKAGVLFEG--GNWDRLITFRLDELERREKGPPGR 223 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~---~y~~y~G~VQRvtdgkaaVLFeG--gnWdKlvtf~l~eLe~~~~gPPm~ 223 (238)
..+--|+.|-|-.-.| +.==|.|.|..+.++...|-+.| -.|+.+|+ ++.|...-.-+|++
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~f~~V~y~~~~~~~~EiV~--~~rlR~~n~~~p~~ 124 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVT--LERLRPVNPNPLAT 124 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEETTEEEEEETTC----CEEEC--GGGEEECCCCCCC-
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeCCEEEEEEcCCCCCcceEEe--hhheEeCCCCCCcc
Confidence 4577999999976543 33347899999999999999776 57999998 67776665556654
No 51
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=33.62 E-value=96 Score=21.97 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=35.1
Q ss_pred ccCCceEEEeCC-CCcccceeceEEEeeC-CeeEEEeeC-CCcceeEEeeccchh
Q 044915 163 LMPGMFAIVKNP-NNPFYMYCGIVQRITD-GKAGVLFEG-GNWDRLITFRLDELE 214 (238)
Q Consensus 163 ilPG~~v~V~n~-~~~y~~y~G~VQRvtd-gkaaVLFeG-gnWdKlvtf~l~eLe 214 (238)
+-+|+.+.+.-. ++.| |.+.|..|.+ +++-|.|-+ ||-+. ..+++|-
T Consensus 28 ~~~G~~c~a~~~~d~~w--yRA~I~~~~~~~~~~V~fvDyGn~e~---v~~~~lr 77 (94)
T 3fdr_A 28 VHVGDIVAAPLPTNGSW--YRARVLGTLENGNLDLYFVDFGDNGD---CPLKDLR 77 (94)
T ss_dssp CCTTCEEEEEETTTTEE--EEEEEEEECTTSCEEEEETTTCCEEE---ECGGGCE
T ss_pred CCCCCEEEEEECCCCeE--EEEEEEEECCCCeEEEEEEcCCCeEE---EEHHHhh
Confidence 568999999864 4444 6899999976 689999988 88764 3455553
No 52
>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1
Probab=33.31 E-value=73 Score=24.78 Aligned_cols=41 Identities=12% Similarity=-0.091 Sum_probs=30.7
Q ss_pred ccCCceEEEeCC-C-CcccceeceEEEeeCCeeEEEeeCCCcc
Q 044915 163 LMPGMFAIVKNP-N-NPFYMYCGIVQRITDGKAGVLFEGGNWD 203 (238)
Q Consensus 163 ilPG~~v~V~n~-~-~~y~~y~G~VQRvtdgkaaVLFeGgnWd 203 (238)
+-+|..|.|.=+ . +.-..+.+.|.|+.++.+++-|..=..|
T Consensus 73 ~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~~~~gl~f~~id~d 115 (149)
T 1ywu_A 73 GDPQRPFEARLYLGLDVLIRMEISLAWARDGLLGFECQHIDLD 115 (149)
T ss_dssp CCTTSEEEEEEESSSSCEEEEEEEEEEEETTEEEEEEEEECHH
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEEEEEEcCCEEEEEEEECCHH
Confidence 556888877422 1 3456899999999999999999865544
No 53
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=32.86 E-value=63 Score=25.04 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcc
Q 044915 175 NNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERRE 217 (238)
Q Consensus 175 ~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~ 217 (238)
.+.++.|.|.|.||.||---.+..+| +-+++||.-+..-|
T Consensus 4 ~~~~~~~~~~V~~V~DGDTi~v~~~g---~~~~VRL~gIDaPE 43 (143)
T 4eqp_A 4 TKKLHKEPATLIKAIDGDTVKLMYKG---QPMTFRLLLVDTPE 43 (143)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEETT---EEEEEEETTEECCC
T ss_pred CCCCceeeEEEEEEECCCEEEEEeCC---cEEEEEEEeecCCC
Confidence 45678899999999999887776544 56899998875433
No 54
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=32.55 E-value=45 Score=31.06 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=30.9
Q ss_pred cccCCceEEEeCCCCc-ccceeceEEEeeCCeeEEEeeC
Q 044915 162 LLMPGMFAIVKNPNNP-FYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~-y~~y~G~VQRvtdgkaaVLFeG 199 (238)
-|.+|+.|.|.+.++. -..+.|.|.+|++.++.|.|+.
T Consensus 80 ~~~~Gd~v~~~~~~~~~~~~~~g~v~~~~~~~i~v~~~~ 118 (646)
T 4b3f_X 80 SFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDE 118 (646)
T ss_dssp CCCTTCEEEEEETTTTSCCCEEEEEEEEETTEEEEECC-
T ss_pred CCCCCCEEEEEecCCCCCceEEEEEEEEeCCEEEEEECC
Confidence 4889999999865543 3568999999999999999975
No 55
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.33 E-value=46 Score=26.42 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=35.4
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcce
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDR 204 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdK 204 (238)
.|..|++|.|+--. |-|-+|.|.+|--.+--|+.||=|..|
T Consensus 45 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~k~~~V~VEgvn~~k 85 (121)
T 3j21_U 45 PVRVGDKVRIMRGD--YKGHEGKVVEVDLKRYRIYVEGATLRK 85 (121)
T ss_dssp ECCSSSEEEECSSS--CSSEEEEEEEEETTTTEEEETTCEEEC
T ss_pred ccccCCEEEEeecC--CCCcEeEEEEEEecCCEEEEeCeEEEe
Confidence 38899999999765 679999999999888889999988765
No 56
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=30.89 E-value=1.5e+02 Score=23.21 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=32.1
Q ss_pred ccCCceEEEeCC-CCcccceeceEEEeeCCeeEEEeeC-CCcce
Q 044915 163 LMPGMFAIVKNP-NNPFYMYCGIVQRITDGKAGVLFEG-GNWDR 204 (238)
Q Consensus 163 ilPG~~v~V~n~-~~~y~~y~G~VQRvtdgkaaVLFeG-gnWdK 204 (238)
+-+|+.+.+.-. ++.| |.+.|.+|.++.+-|.|-. ||-..
T Consensus 52 ~~~g~~c~a~~~~d~~w--yRa~V~~v~~~~~~V~~vDyG~~~~ 93 (218)
T 2wac_A 52 PKRGDLVAAQFTLDNQW--YRAKVERVQGSNATVLYIDYGNKET 93 (218)
T ss_dssp CCTTCEEEEECTTTCCE--EEEEEEEEETTEEEEEETTTCCEEE
T ss_pred CCcCCEEEEEECCCCeE--EEEEEEEecCCeEEEEEEecCCeEE
Confidence 348999999876 4555 6799999999999999976 88543
No 57
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.61 E-value=38 Score=25.70 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=38.2
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeCCCcceeEEeeccchhhc
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEGGNWDRLITFRLDELERR 216 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeGgnWdKlvtf~l~eLe~~ 216 (238)
+.+..|+.|.-+=-+.-|| .+.|+.|++ ++.-|+|.+|+ .-|.+.+++...
T Consensus 20 ~~f~vGd~VlArW~D~~yY--PAkI~sV~~~~~YtV~F~DG~---~etvk~~~IKp~ 71 (85)
T 3qii_A 20 SEFQINEQVLACWSDCRFY--PAKVTAVNKDGTYTVKFYDGV---VQTVKHIHVKAF 71 (85)
T ss_dssp -CCCTTCEEEEECTTSCEE--EEEEEEECTTSEEEEEETTSC---EEEEEGGGEEEC
T ss_pred cccccCCEEEEEeCCCCEe--eEEEEEECCCCeEEEEEeCCC---eEEecHHHcccC
Confidence 4578899998888666665 589999988 79999999965 445566666443
No 58
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=29.24 E-value=83 Score=23.04 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=34.9
Q ss_pred ccCCceEEEeCC-CCcccceeceEEEeeC-CeeEEEeeC-CCcceeEEeeccch
Q 044915 163 LMPGMFAIVKNP-NNPFYMYCGIVQRITD-GKAGVLFEG-GNWDRLITFRLDEL 213 (238)
Q Consensus 163 ilPG~~v~V~n~-~~~y~~y~G~VQRvtd-gkaaVLFeG-gnWdKlvtf~l~eL 213 (238)
+-+|+.|.+.-. ++.| |.+.|..|.+ +++-|.|-. ||.+. ..+++|
T Consensus 33 ~~~G~~c~a~~~~d~~w--yRA~V~~~~~~~~~~V~fvDyGn~e~---v~~~~L 81 (110)
T 2diq_A 33 VHVGDIVAAPLPTNGSW--YRARVLGTLENGNLDLYFVDFGDNGD---CPLKDL 81 (110)
T ss_dssp CCTTCEEEECCTTTCSC--EEEEECCCCSSSCEEEEETTTCCEEE---ECGGGC
T ss_pred CCCCCEEEEEECCCCeE--EEEEEEEECCCCeEEEEEEeCCCeEE---EehHHh
Confidence 468999999875 4555 6799999976 899999988 88764 344554
No 59
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=28.38 E-value=1.5e+02 Score=24.05 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=32.2
Q ss_pred ccCCceEEEeCCCCcccceeceEEEee-CCeeEEEeeC-CCccee
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRIT-DGKAGVLFEG-GNWDRL 205 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvt-dgkaaVLFeG-gnWdKl 205 (238)
+-+|+.+.+.-.++.| |.+.|.+|. ++++-|.|-. ||-..+
T Consensus 66 ~~~G~~c~a~~~d~~w--yRa~V~~~~~~~~~~V~~vDyGn~~~v 108 (246)
T 2hqx_A 66 PRRGEFCIAKFVDGEW--YRARVEKVESPAKIHVFYIDYGNREVL 108 (246)
T ss_dssp CCTTCEEEEECTTSCE--EEEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcCCCCE--EEEEEEEEcCCCeEEEEEEeCCCeEEE
Confidence 3589999998665555 679999998 5899999877 886643
No 60
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=27.88 E-value=13 Score=32.33 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCC--eeEEEeeCCCcceeEEeeccchh
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDG--KAGVLFEGGNWDRLITFRLDELE 214 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdg--kaaVLFeGgnWdKlvtf~l~eLe 214 (238)
.+-+|+.|+|++ -+|-+|+|.|.+|... ++-|++.==.=.--|++.++++|
T Consensus 194 ~~~~Gd~V~I~~--Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~l~~~~ve 246 (248)
T 1m1h_A 194 EFEKGDQVRVIE--GPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVE 246 (248)
T ss_dssp -------------------------------------------------------
T ss_pred cCCCCCEEEEec--cCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEEEcHHHEE
Confidence 467999999995 5899999999999754 67776553222234555555554
No 61
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=27.52 E-value=62 Score=25.26 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=35.5
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcce
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDR 204 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdK 204 (238)
-|..|++|.|+.-. |-+-+|.|.+|-..+--|+.||=|+-|
T Consensus 6 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~~~ViVEGvN~~k 46 (110)
T 3v2d_Y 6 HVKKGDTVLVASGK--YKGRVGKVKEVLPKKYAVIVEGVNIVK 46 (110)
T ss_dssp SCCTTSEEEECSST--TTTCEEEEEEEEGGGTEEEETTSSEEE
T ss_pred ccCCCCEEEEeEcC--CCCeEeEEEEEECCCCEEEEeCEEEEE
Confidence 38899999999765 578999999999888889999999853
No 62
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=33.49 E-value=13 Score=27.86 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=32.3
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeCCCcceeEEeeccch
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEGGNWDRLITFRLDEL 213 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeGgnWdKlvtf~l~eL 213 (238)
+-.|+.|..+=.++.|| .+.|..|.+ +++-|+|.+||=+ |..+++|
T Consensus 7 ~kvGd~clAkwsDg~wY--~A~I~~v~~~~~y~V~F~DGn~E---~V~~s~L 53 (81)
T 2ldm_A 7 FQINEQVLASWSDSRFY--PAKVTAVNKDGTYTVKFYDGVVQ---TVKHIHV 53 (81)
Confidence 34677777765667765 689999954 7899999987644 3344444
No 63
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=27.17 E-value=62 Score=26.13 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=44.0
Q ss_pred CCCCCCCCcccCCceEEEeCCCCccc--------ceeceEEEeeCCeeEEEeeC--------CCcceeEEeeccchhhcc
Q 044915 154 KPKPPEWPLLMPGMFAIVKNPNNPFY--------MYCGIVQRITDGKAGVLFEG--------GNWDRLITFRLDELERRE 217 (238)
Q Consensus 154 kp~~p~~~~ilPG~~v~V~n~~~~y~--------~y~G~VQRvtdgkaaVLFeG--------gnWdKlvtf~l~eLe~~~ 217 (238)
++..+..|.+-+|+.|+|+|-....+ +-+|.|.|+. -+-|..|- =.|==.|.|..+||=.-+
T Consensus 28 R~~~~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~--G~~v~Pd~~A~G~ge~p~~lY~VrF~~~eLWg~~ 105 (126)
T 2zzd_A 28 FKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV--YESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEY 105 (126)
T ss_dssp GTTTTCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE--EEECCHHHHTTTCCSCCEEEEEEEEEHHHHCTTC
T ss_pred cCCCCCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe--cccCCcchhccCCCCCcceeEEEEecchhhCCCC
Confidence 43455567799999999999888765 5578888877 22333332 346668999999997654
Q ss_pred c
Q 044915 218 K 218 (238)
Q Consensus 218 ~ 218 (238)
.
T Consensus 106 a 106 (126)
T 2zzd_A 106 S 106 (126)
T ss_dssp C
T ss_pred C
Confidence 3
No 64
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=26.92 E-value=1.6e+02 Score=20.94 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=35.7
Q ss_pred ccCCceEEEeCC-CCcccceeceEEEeeC--CeeEEEeeC-CCcceeEEeeccchhh
Q 044915 163 LMPGMFAIVKNP-NNPFYMYCGIVQRITD--GKAGVLFEG-GNWDRLITFRLDELER 215 (238)
Q Consensus 163 ilPG~~v~V~n~-~~~y~~y~G~VQRvtd--gkaaVLFeG-gnWdKlvtf~l~eLe~ 215 (238)
.-+|+.+..+=. ++.| |.+.|+.|.+ +.+-|.|-+ ||= -+..+++|..
T Consensus 18 ~kvGd~C~A~ys~Dg~w--YRA~I~~i~~~~~~~~V~fvDYGN~---e~V~~~~Lr~ 69 (77)
T 3pnw_C 18 WKPGDECFALYWEDNKF--YRAEVEALHSSGMTAVVKFIDYGNY---EEVLLSNIKP 69 (77)
T ss_dssp CCTTCEEEEEETTTTEE--EEEEEEEECTTSSEEEEEETTTCCE---EEEEGGGEEC
T ss_pred CCcCCEEEEEECCCCCE--EEEEEEEEeCCCCEEEEEEEcCCCe---EEEeHHHeEE
Confidence 568999999854 5544 6799999964 689999998 883 3456777743
No 65
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=26.72 E-value=51 Score=24.14 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=31.6
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeC--CeeEEEeeCCC
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITD--GKAGVLFEGGN 201 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtd--gkaaVLFeGgn 201 (238)
+-.|.-|+..=-+-.| |.|.|++|.. |..-|.||.|.
T Consensus 14 f~vGddVLA~wtDGl~--Y~gtI~~V~~~~gtC~V~F~D~s 52 (66)
T 2eqj_A 14 FEEGQDVLARWSDGLF--YLGTIKKINILKQSCFIIFEDSS 52 (66)
T ss_dssp SCTTCEEEEECTTSCE--EEEEEEEEETTTTEEEEEETTTE
T ss_pred ccCCCEEEEEEccCcE--EEeEEEEEccCCcEEEEEEccCC
Confidence 6789999998877777 5799999995 99999999874
No 66
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=26.58 E-value=1.1e+02 Score=24.07 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCCcccceeceEEEeeCCeeEEE---eeC-CCc-ceeEEeeccc
Q 044915 174 PNNPFYMYCGIVQRITDGKAGVL---FEG-GNW-DRLITFRLDE 212 (238)
Q Consensus 174 ~~~~y~~y~G~VQRvtdgkaaVL---FeG-gnW-dKlvtf~l~e 212 (238)
+.|--=...|.|.+|++.++-|. -.| |+| .+-+++.|.+
T Consensus 54 ~G~yiG~N~GrI~~It~~~I~l~E~v~Dg~G~W~eR~~~L~L~~ 97 (113)
T 2ivw_A 54 VGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAELLLNS 97 (113)
T ss_dssp SSEEETTTEEEEEEEETTEEEEEEEEECTTSSEEEEEEEEECCC
T ss_pred cCCEeccCCCEEEEEeCCeEEEEEEEECCCCCEEEEeeEEEccC
Confidence 33333346789999999998774 344 999 6778887754
No 67
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=25.30 E-value=76 Score=24.79 Aligned_cols=41 Identities=22% Similarity=0.051 Sum_probs=35.4
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcce
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDR 204 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdK 204 (238)
.|..|++|.|+--. |-+-+|.|.+|-..+--|+.||=|..|
T Consensus 15 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~~~V~VEGvN~~k 55 (115)
T 2zjr_R 15 HFKKGDTVIVLSGK--HKGQTGKVLLALPRDQKVVVEGVNVIT 55 (115)
T ss_dssp SSCTTSEEECCSSS--STTCEEEEEEEETTTTEEEESSSCBCC
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEECCCCEEEEeCcEeEE
Confidence 49999999999876 579999999998888888999988654
No 68
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=25.10 E-value=1.4e+02 Score=22.44 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=30.7
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEE---eeC-CCc-ceeEEeec
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVL---FEG-GNW-DRLITFRL 210 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVL---FeG-gnW-dKlvtf~l 210 (238)
||.|.-.|...-+.|--=...|.|.+|++.++-|. -.| |+| .+-+|+.|
T Consensus 39 LV~~dg~v~~V~~G~yiG~n~G~I~~I~~~~I~l~E~v~Dg~G~W~eR~~~L~L 92 (93)
T 2y4x_A 39 LVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 92 (93)
T ss_dssp EEEETTEEEEECTTCEETTTTEEEEEEETTEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred EEEeCCCEEEEccCCEeccCCCEEEEEeCCeEEEEEEEECCCCCEEEeeEEEEc
Confidence 33344444444444444445699999999998764 243 999 55666655
No 69
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=24.98 E-value=80 Score=25.18 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=34.8
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcc
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERRE 217 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~ 217 (238)
+-+||.+.+.++ .|.|..|+|++|-|=|--===.|=++|.++=++.++
T Consensus 103 ~~~G~~~~~~~~-------~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~v~~v~~ 150 (157)
T 3pr9_A 103 PIKGLTITIDGI-------PGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVD 150 (157)
T ss_dssp CCTTCEEEETTE-------EEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEEC
T ss_pred cCCCcEEEecCC-------CeEEEEEcCCEEEEECCCccCCCeEEEEEEEEEEEe
Confidence 456999988654 489999999999887654334567788776655543
No 70
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=24.69 E-value=85 Score=22.88 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=28.2
Q ss_pred cceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhc
Q 044915 179 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERR 216 (238)
Q Consensus 179 ~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~ 216 (238)
-.+.+.|-.|++..|-|.+.+| .-+|+..+++.-.
T Consensus 35 ~~~~AvV~~v~~~~~~v~~~~g---~~~~l~~~~~~WA 69 (106)
T 3d0f_A 35 DILAAVVLSATPGAVEAFRKNG---ETIRITGDGLKAA 69 (106)
T ss_dssp TCEEEEEEEEETTEEEEEETTS---CEEEECGGGGSTT
T ss_pred CeEEEEEEEeCCCeEEEEEcCC---CeEEEcHHHChhh
Confidence 4567999999999999999887 5677888887643
No 71
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=24.64 E-value=1.4e+02 Score=28.12 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=37.1
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
..+-.||-.-.+||.|+..-..-.|.+|-++++-|-|+|
T Consensus 365 ~~F~~GMKLEAvD~~np~~icvATV~~v~~~~l~i~fDg 403 (456)
T 3f70_A 365 HGFKVGMKLEAVDLMEPRLICVATVKRVVHRLLSIHFDG 403 (456)
T ss_dssp CCCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETT
T ss_pred cccccCCEEEeecCCCCCcEEEEEEEEecCCEEEEEeCC
Confidence 469999999999999999999999999999999999988
No 72
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=24.49 E-value=1e+02 Score=25.52 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=32.3
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEE---EeeC-CCc-ceeEEeeccchhh
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGV---LFEG-GNW-DRLITFRLDELER 215 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaV---LFeG-gnW-dKlvtf~l~eLe~ 215 (238)
|-|.-.|...-..|--=...|.|.+|++.++-| +-+| |+| .+-.|+.|++=+.
T Consensus 111 v~~dg~v~~V~~G~ylG~n~GrI~~I~~~~i~l~E~v~Dg~G~W~eR~~~L~L~~~~~ 168 (181)
T 4av2_M 111 IEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAELLLNSSDK 168 (181)
T ss_dssp EEETTEEEEECSSEEETTTTEEEEEEETTEEEEEEEEECSSSSEEEEEEEEECCC---
T ss_pred EecCCCEEEEccCCEeccCCcEEEEEeCCEEEEEEEeECCCCCEEEEeEEEEcCcccc
Confidence 333333333334442233579999999999876 3555 999 5778888877544
No 73
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=24.49 E-value=1.3e+02 Score=26.13 Aligned_cols=55 Identities=31% Similarity=0.337 Sum_probs=38.7
Q ss_pred cccCCceEEEeCCC-CcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhccc
Q 044915 162 LLMPGMFAIVKNPN-NPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREK 218 (238)
Q Consensus 162 ~ilPG~~v~V~n~~-~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~ 218 (238)
||---..|+-+||- ++----.|+|.-|.+..|-|||-|=|=-|-|.| +|||.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 66 (200)
T 3gox_A 11 MLKNDDFVIAKNQLGNIVPNSVGVIRAVNGKSAMVLFIGLNELKRVDF--SELEAIDI 66 (200)
T ss_dssp CCCTTCEEEESSCBTTBCTTBEEEEEEEETTEEEEEETTTTEEEEEEG--GGEEECCG
T ss_pred eecCCCEEEeccccccccccceeeEEecCCceEEEEEEehhHhhhcch--hhcceeee
Confidence 34444556666653 344445799999999999999999886666655 78887653
No 74
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.48 E-value=1.6e+02 Score=21.77 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=32.8
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCC
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGN 201 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgn 201 (238)
+-+-.|.-|...--+-.|| -|.|++|. .++.-|.||.+.
T Consensus 8 ~~f~eGqdVLarWsDGlfY--lGtV~kV~~~~~~ClV~FeD~s 48 (68)
T 2e5p_A 8 PRLWEGQDVLARWTDGLLY--LGTIKKVDSAREVCLVQFEDDS 48 (68)
T ss_dssp CCCCTTCEEEEECTTSSEE--EEEEEEEETTTTEEEEEETTTE
T ss_pred cccccCCEEEEEecCCcEE--EeEEEEEecCCcEEEEEEccCC
Confidence 4577899999988888886 59999999 678999999864
No 75
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.09 E-value=71 Score=26.13 Aligned_cols=39 Identities=13% Similarity=-0.044 Sum_probs=34.1
Q ss_pred cccCCceEEEeCCCCccccee-ceEEEeeCCeeEEEeeCCCc
Q 044915 162 LLMPGMFAIVKNPNNPFYMYC-GIVQRITDGKAGVLFEGGNW 202 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~-G~VQRvtdgkaaVLFeGgnW 202 (238)
.|..|++|.|+--. |-|-+ |.|.+|--.+--|+.||=|.
T Consensus 48 ~IkkGD~V~Vi~Gk--dKGk~~GkV~~V~~k~~~V~VEgvn~ 87 (145)
T 2zkr_t 48 PIRKDDEVQVVRGH--YKGQQIGKVVQVYRKKYVIYIERVQR 87 (145)
T ss_dssp BCCTTCEEEECSST--TTTCCSEEEEEEETTTTEEEETTCEE
T ss_pred ccCCCCEEEEeecC--CCCcceeEEEEEECCCCEEEEeeeEe
Confidence 39999999999865 57999 99999998888889999885
No 76
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=23.87 E-value=46 Score=26.60 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=35.9
Q ss_pred CCcccCCceEEEeCCCCcccceeceEEEeeCC-eeEEEeeCCCcce
Q 044915 160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDG-KAGVLFEGGNWDR 204 (238)
Q Consensus 160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdg-kaaVLFeGgnWdK 204 (238)
++.|-.|..|+.++.|.-|| .|.|-+++.- ..-|-|..|+|..
T Consensus 4 ~~~v~vGq~V~ak~~ngryy--~~~V~~~~~~~~y~V~F~DgS~s~ 47 (123)
T 2xdp_A 4 EKVISVGQTVITKHRNTRYY--SCRVMAVTSQTFYEVMFDDGSFSR 47 (123)
T ss_dssp CCCCCTTCCCCCCCCCCCCC--CCEEEEEEEEEEEEEEETTSCEEE
T ss_pred ccccccCCEEEEECCCCcEE--eEEEEEEeeEEEEEEEcCCCCccC
Confidence 55688999999999999996 6799988863 3468899999987
No 77
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=23.01 E-value=79 Score=26.19 Aligned_cols=41 Identities=10% Similarity=-0.055 Sum_probs=35.6
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcce
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDR 204 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdK 204 (238)
.|--|++|+|+--. |-+-+|.|.+|-..+--|+.||=|+.|
T Consensus 48 ~IkKGD~V~Vi~Gk--dKGk~GkVl~V~~kk~~V~VEGVN~~K 88 (150)
T 3iz5_Y 48 PIRKDDEVQVVRGS--YKGREGKVVQVYRRRWVIHVERITREK 88 (150)
T ss_dssp ECCSSSEEEECSST--TTTCEEEEEEEETTTTEEEETTCEEEC
T ss_pred ccCCCCEEEEeecC--CCCccceEEEEEcCCCEEEEeCcEEEe
Confidence 38899999999876 568899999999888889999988775
No 78
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=22.91 E-value=71 Score=33.81 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=30.4
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCC-eeEEEee
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDG-KAGVLFE 198 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdg-kaaVLFe 198 (238)
.+=+|++|.... +.|||-.|.|+..+|+ |+-|.+.
T Consensus 900 eFP~gS~vf~LG--~~~YG~~g~V~g~~~~~rl~v~v~ 935 (1155)
T 3pie_A 900 EFPKGSKVVFLG--DYAYGGEATVDGYNSETRLKLTVK 935 (1155)
T ss_pred hCCCCCEEEEeC--CccCCCCeEEeeecCCCeEEEEEe
Confidence 345799999985 6999999999999999 9998874
No 79
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=22.78 E-value=1.4e+02 Score=27.90 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=37.4
Q ss_pred CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915 161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
..+-+||-.-.+|+.|+..-....|-+|.+.++-|-|+|
T Consensus 375 ~~F~~gmkLEAvD~~np~~icvATV~~v~~~~~~i~fDg 413 (447)
T 3h6z_A 375 HGFEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDG 413 (447)
T ss_dssp CCCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEECTT
T ss_pred CccccCCEEEeecCCCCCcEEEEEEeEecCCEEEEEeCC
Confidence 579999999999999999999999999999999999988
No 80
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=22.49 E-value=84 Score=24.93 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=33.8
Q ss_pred cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcce
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDR 204 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdK 204 (238)
.|-.|++|.|+--. |-+-+|.|.+|--.+--|+.||=|..|
T Consensus 42 ~IkkGD~V~Vi~G~--dKGk~GkV~~V~~k~~~V~VEgvn~kK 82 (120)
T 1vq8_T 42 RVNAGDTVEVLRGD--FAGEEGEVINVDLDKAVIHVEDVTLEK 82 (120)
T ss_dssp ECCTTCEEEECSST--TTTCEEEEEEEETTTTEEEETTCEEEC
T ss_pred cccCCCEEEEEecC--CCCCEEEEEEEECCCCEEEEeCeEeEc
Confidence 48999999999865 679999999998777778888866533
No 81
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=22.17 E-value=1.2e+02 Score=21.52 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=36.2
Q ss_pred ccCCceEEEeCC-CCcccceeceEEEeeC--CeeEEEeeC-CCcceeEEeeccchhh
Q 044915 163 LMPGMFAIVKNP-NNPFYMYCGIVQRITD--GKAGVLFEG-GNWDRLITFRLDELER 215 (238)
Q Consensus 163 ilPG~~v~V~n~-~~~y~~y~G~VQRvtd--gkaaVLFeG-gnWdKlvtf~l~eLe~ 215 (238)
.-+|+.+..+=. ++.| |.+.|+.|.+ +++-|.|-+ ||-+.+ .+++|..
T Consensus 10 ~~~G~~c~A~~s~Dg~w--YRA~I~~i~~~~~~~~V~fiDYGN~e~V---~~~~Lr~ 61 (78)
T 2d9t_A 10 WKPGDECFALYWEDNKF--YRAEVEALHSSGMTAVVKFTDYGNYEEV---LLSNIKP 61 (78)
T ss_dssp CCTTCEEEEECTTTCCE--EEEEEEEECSSSSEEEEEETTTTEEEEE---EGGGEEE
T ss_pred CCcCCEEEEEECCCCCE--EEEEEEEEeCCCCEEEEEEEcCCCeEEE---cHHHeEe
Confidence 467999998865 4555 6799999986 889999998 886643 5566633
No 82
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=21.87 E-value=2.6e+02 Score=21.13 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=32.7
Q ss_pred cccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCC
Q 044915 162 LLMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGN 201 (238)
Q Consensus 162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgn 201 (238)
-+--|.-|.+..-+-.|| -|.|++|. .++.-|.||.+.
T Consensus 26 ~f~eGeDVLarwsDGlfY--LGTI~kV~~~~e~ClV~F~D~S 65 (79)
T 2m0o_A 26 RLWEGQDVLARWTDGLLY--LGTIKKVDSAREVCLVQFEDDS 65 (79)
T ss_dssp CCCTTCEEEBCCTTSCCC--EEEEEEEETTTTEEEEEETTSC
T ss_pred eeccCCEEEEEecCCCEE--eEEEEEeccCCCEEEEEEcCCC
Confidence 477899999999999996 59999887 678999999874
No 83
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=20.97 E-value=1.1e+02 Score=24.82 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=35.5
Q ss_pred ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcce
Q 044915 163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDR 204 (238)
Q Consensus 163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdK 204 (238)
|--|++|+|+--. |-+-+|.|.+|-..+--|+.||=|+.|
T Consensus 49 IkkgD~V~Vi~Gk--dKGk~GkV~~V~~kk~~V~VEgVn~~K 88 (135)
T 4a17_S 49 VRKDDEVLIVRGK--FKGNKGKVTQVYRKKWAIHVEKISKNK 88 (135)
T ss_dssp CCTTCEEEECSST--TTTCEEEEEEEETTTTEEEETTCCEEE
T ss_pred ccCCCEEEEeecC--CCCceeeEEEEEcCCCEEEEeCeEEEc
Confidence 7889999999875 678899999999988889999999876
No 84
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.80 E-value=95 Score=23.70 Aligned_cols=38 Identities=21% Similarity=-0.128 Sum_probs=27.2
Q ss_pred cccCCce-EEEeCCCC-------------cccceeceEEEeeCCeeEEEeeC
Q 044915 162 LLMPGMF-AIVKNPNN-------------PFYMYCGIVQRITDGKAGVLFEG 199 (238)
Q Consensus 162 ~ilPG~~-v~V~n~~~-------------~y~~y~G~VQRvtdgkaaVLFeG 199 (238)
.+-|-.| +-|.|-.. +|-.|=|.|..|+.|.|-|.|+.
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~ 55 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFIN 55 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESS
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECC
Confidence 3456667 66888643 23334379999999999999975
Done!