Query 044920
Match_columns 160
No_of_seqs 136 out of 902
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.1E-42 2.4E-47 258.6 19.5 150 1-155 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 2.7E-37 5.8E-42 228.7 19.7 147 4-155 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.9E-18 4.1E-23 123.6 17.6 138 5-152 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 1.4E-15 3.1E-20 108.6 18.8 108 3-123 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 7.2E-15 1.6E-19 106.5 17.0 136 6-152 1-142 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.6 3.4E-14 7.4E-19 102.7 15.5 137 6-151 1-139 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 2.4E-13 5.2E-18 97.4 17.8 112 4-125 2-114 (140)
8 cd08865 SRPBCC_10 Ligand-bindi 99.6 2.9E-13 6.4E-18 96.4 16.5 136 6-152 1-138 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.6 1.9E-13 4.1E-18 98.8 14.2 135 6-153 1-136 (138)
10 cd07822 SRPBCC_4 Ligand-bindin 99.5 5.4E-12 1.2E-16 90.0 16.7 110 6-124 2-112 (141)
11 cd08862 SRPBCC_Smu440-like Lig 99.5 5.8E-12 1.3E-16 90.1 16.7 106 5-123 2-107 (138)
12 cd07812 SRPBCC START/RHO_alpha 99.5 6.8E-12 1.5E-16 87.3 15.8 135 7-150 2-139 (141)
13 cd08860 TcmN_ARO-CYC_like N-te 99.4 3.1E-11 6.7E-16 89.1 16.7 117 5-131 2-120 (146)
14 cd07825 SRPBCC_7 Ligand-bindin 99.4 1.3E-11 2.8E-16 89.4 13.2 139 6-152 2-143 (144)
15 cd07814 SRPBCC_CalC_Aha1-like 99.4 2.9E-11 6.2E-16 86.4 14.5 136 6-152 2-137 (139)
16 cd05018 CoxG Carbon monoxide d 99.4 5.3E-11 1.1E-15 85.5 15.5 114 5-126 2-115 (144)
17 PF03364 Polyketide_cyc: Polyk 99.4 7.4E-11 1.6E-15 84.1 15.1 126 12-148 1-129 (130)
18 cd07817 SRPBCC_8 Ligand-bindin 99.3 8.9E-11 1.9E-15 84.0 14.6 107 5-125 1-107 (139)
19 cd07818 SRPBCC_1 Ligand-bindin 99.3 1.8E-10 4E-15 83.9 15.8 112 5-125 3-118 (150)
20 cd07820 SRPBCC_3 Ligand-bindin 99.3 7.6E-11 1.7E-15 85.3 12.8 107 6-123 1-111 (137)
21 cd07824 SRPBCC_6 Ligand-bindin 99.3 6.2E-10 1.3E-14 81.4 16.1 108 6-125 3-113 (146)
22 PRK10724 hypothetical protein; 99.3 4.7E-10 1E-14 84.0 14.9 134 4-150 15-149 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 99.2 7.5E-10 1.6E-14 80.9 14.4 138 7-151 2-143 (146)
24 COG3427 Carbon monoxide dehydr 99.1 9.6E-09 2.1E-13 75.6 13.4 142 5-154 2-145 (146)
25 PF06240 COXG: Carbon monoxide 99.0 8.2E-08 1.8E-12 70.1 15.2 134 9-152 2-139 (140)
26 COG5637 Predicted integral mem 98.8 3.1E-08 6.7E-13 74.9 9.8 108 4-126 70-179 (217)
27 cd08898 SRPBCC_CalC_Aha1-like_ 98.8 1.8E-07 3.8E-12 67.4 12.2 139 5-154 2-145 (145)
28 cd08899 SRPBCC_CalC_Aha1-like_ 98.8 2.5E-07 5.5E-12 68.6 13.2 129 4-156 11-139 (157)
29 cd08876 START_1 Uncharacterize 98.6 9E-06 2E-10 61.9 17.9 144 4-152 41-194 (195)
30 cd08893 SRPBCC_CalC_Aha1-like_ 98.6 2.2E-06 4.7E-11 60.9 13.2 134 5-153 1-135 (136)
31 cd07826 SRPBCC_CalC_Aha1-like_ 98.6 5.6E-06 1.2E-10 60.3 14.6 140 6-154 2-142 (142)
32 cd08894 SRPBCC_CalC_Aha1-like_ 98.6 3.6E-06 7.8E-11 60.9 13.1 134 6-153 2-138 (139)
33 cd08900 SRPBCC_CalC_Aha1-like_ 98.6 1.6E-05 3.4E-10 57.8 16.5 137 6-153 2-142 (143)
34 cd08895 SRPBCC_CalC_Aha1-like_ 98.5 1.6E-05 3.4E-10 58.0 16.0 137 5-153 1-145 (146)
35 cd08896 SRPBCC_CalC_Aha1-like_ 98.4 2E-05 4.4E-10 57.4 14.1 140 6-153 2-145 (146)
36 cd08897 SRPBCC_CalC_Aha1-like_ 98.4 1.7E-05 3.7E-10 56.9 12.9 128 5-153 1-132 (133)
37 cd08891 SRPBCC_CalC Ligand-bin 98.4 3.1E-05 6.8E-10 56.6 14.4 136 6-152 2-147 (149)
38 COG2867 Oligoketide cyclase/li 98.3 1.9E-05 4.2E-10 58.0 10.8 112 4-125 2-113 (146)
39 PF08327 AHSA1: Activator of H 98.2 0.00011 2.3E-09 51.3 13.9 122 13-152 1-123 (124)
40 COG3832 Uncharacterized conser 98.1 0.00041 8.9E-09 51.2 14.7 139 4-153 8-148 (149)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.9 0.0004 8.7E-09 50.0 11.8 129 6-155 2-133 (136)
42 cd08892 SRPBCC_Aha1 Putative h 97.9 0.0011 2.4E-08 47.1 13.8 100 6-123 2-101 (126)
43 cd08874 START_STARD9-like C-te 97.8 0.004 8.7E-08 48.5 16.6 145 5-153 46-204 (205)
44 PTZ00220 Activator of HSP-90 A 97.6 0.0012 2.7E-08 47.5 9.9 123 12-153 1-127 (132)
45 cd08873 START_STARD14_15-like 97.5 0.014 3E-07 46.4 16.0 147 4-155 77-235 (235)
46 cd08863 SRPBCC_DUF1857 DUF1857 97.4 0.028 6E-07 41.4 15.0 99 7-125 3-109 (141)
47 cd00177 START Lipid-binding ST 97.2 0.053 1.2E-06 40.2 16.8 143 4-151 39-191 (193)
48 cd08877 START_2 Uncharacterize 97.1 0.049 1.1E-06 42.2 15.0 145 4-153 46-213 (215)
49 cd08913 START_STARD14-like Lip 97.1 0.068 1.5E-06 42.7 15.4 144 5-155 82-240 (240)
50 cd08905 START_STARD1-like Chol 97.0 0.064 1.4E-06 41.7 14.1 143 6-153 51-207 (209)
51 PF08982 DUF1857: Domain of un 96.7 0.17 3.7E-06 37.5 14.7 99 6-124 2-108 (149)
52 COG4276 Uncharacterized conser 96.7 0.16 3.4E-06 37.2 14.6 138 4-152 2-146 (153)
53 cd08903 START_STARD5-like Lipi 96.5 0.26 5.7E-06 38.2 16.4 143 6-153 48-206 (208)
54 cd08868 START_STARD1_3_like Ch 96.5 0.27 5.9E-06 37.9 15.0 145 6-154 50-207 (208)
55 cd08906 START_STARD3-like Chol 96.4 0.31 6.7E-06 37.9 16.4 142 5-153 50-207 (209)
56 cd08870 START_STARD2_7-like Li 96.4 0.33 7.2E-06 37.5 16.2 145 4-153 50-207 (209)
57 cd08871 START_STARD10-like Lip 96.3 0.35 7.6E-06 37.6 16.4 146 6-156 49-204 (222)
58 cd08914 START_STARD15-like Lip 96.0 0.59 1.3E-05 37.3 14.4 116 4-123 78-205 (236)
59 cd08911 START_STARD7-like Lipi 95.1 1.2 2.6E-05 34.4 16.1 145 4-153 45-205 (207)
60 smart00234 START in StAR and p 94.9 1.2 2.6E-05 33.7 16.7 146 4-154 45-202 (206)
61 cd08869 START_RhoGAP C-termina 94.7 1.5 3.2E-05 33.7 14.4 119 5-128 45-172 (197)
62 PF10698 DUF2505: Protein of u 94.3 1.5 3.3E-05 32.4 14.3 108 7-124 2-128 (159)
63 cd08867 START_STARD4_5_6-like 93.8 2.3 5.1E-05 32.5 15.5 142 5-152 47-205 (206)
64 cd08872 START_STARD11-like Cer 93.2 3.5 7.5E-05 32.7 14.1 144 5-155 53-227 (235)
65 cd08910 START_STARD2-like Lipi 89.9 7.6 0.00017 30.0 14.6 142 4-152 49-204 (207)
66 cd08908 START_STARD12-like C-t 87.8 11 0.00024 29.3 12.7 119 4-128 52-179 (204)
67 PF01852 START: START domain; 84.5 15 0.00032 27.5 17.4 146 4-156 46-204 (206)
68 KOG3177 Oligoketide cyclase/li 84.2 6.9 0.00015 30.7 7.3 106 10-125 74-182 (227)
69 PRK06628 lipid A biosynthesis 60.4 16 0.00034 29.6 4.3 44 116-159 238-281 (290)
70 PF11485 DUF3211: Protein of u 60.2 13 0.00027 27.2 3.3 41 5-48 2-42 (136)
71 cd08902 START_STARD4-like Lipi 60.1 81 0.0018 24.6 14.5 141 6-152 49-201 (202)
72 PRK06553 lipid A biosynthesis 55.9 18 0.00038 29.6 3.9 44 116-159 257-300 (308)
73 TIGR02208 lipid_A_msbB lipid A 52.4 24 0.00052 28.7 4.2 39 117-159 249-287 (305)
74 PRK05645 lipid A biosynthesis 50.1 28 0.0006 28.1 4.2 40 116-159 238-277 (295)
75 cd08904 START_STARD6-like Lipi 49.7 1.2E+02 0.0026 23.4 16.5 118 6-127 48-179 (204)
76 PF02021 UPF0102: Uncharacteri 45.8 71 0.0015 21.4 5.0 66 83-156 14-79 (93)
77 PRK08419 lipid A biosynthesis 45.1 42 0.0009 27.1 4.5 23 137-159 259-281 (298)
78 PRK06860 lipid A biosynthesis 44.9 36 0.00078 27.7 4.2 40 116-159 251-290 (309)
79 PRK08733 lipid A biosynthesis 43.5 39 0.00085 27.5 4.2 40 116-159 248-287 (306)
80 PRK08734 lipid A biosynthesis 42.9 40 0.00087 27.4 4.1 22 138-159 257-278 (305)
81 PRK08943 lipid A biosynthesis 41.8 44 0.00094 27.3 4.2 40 116-159 257-296 (314)
82 PRK08706 lipid A biosynthesis 41.8 40 0.00086 27.1 3.9 40 116-159 232-271 (289)
83 TIGR02207 lipid_A_htrB lipid A 39.7 49 0.0011 26.8 4.1 40 116-159 245-284 (303)
84 PRK05646 lipid A biosynthesis 36.9 54 0.0012 26.7 4.0 40 116-159 249-288 (310)
85 cd07984 LPLAT_LABLAT-like Lyso 36.5 64 0.0014 23.7 4.1 22 138-159 163-184 (192)
86 PRK14681 hypothetical protein; 35.6 1.4E+02 0.0031 22.3 5.7 69 82-157 60-128 (158)
87 KOG0301 Phospholipase A2-activ 35.6 1.4E+02 0.003 27.7 6.4 71 6-85 149-226 (745)
88 PF03279 Lip_A_acyltrans: Bact 35.4 76 0.0016 25.4 4.6 41 115-159 246-286 (295)
89 cd05845 Ig2_L1-CAM_like Second 34.6 1.2E+02 0.0027 20.4 4.9 75 31-118 2-81 (95)
90 KOG2445 Nuclear pore complex c 34.5 1.6E+02 0.0035 24.8 6.3 17 106-122 304-320 (361)
91 PRK07920 lipid A biosynthesis 34.2 60 0.0013 26.3 3.9 39 117-159 236-274 (298)
92 PRK14680 hypothetical protein; 32.4 1.5E+02 0.0032 21.5 5.2 67 82-156 23-89 (134)
93 cd00222 CollagenBindB Collagen 31.9 71 0.0015 24.5 3.6 73 12-92 3-75 (187)
94 PRK14688 hypothetical protein; 30.8 1.4E+02 0.003 21.1 4.8 66 83-156 24-89 (121)
95 cd00307 RuBisCO_small_like Rib 30.4 51 0.0011 22.0 2.3 19 141-159 44-62 (84)
96 PRK06946 lipid A biosynthesis 30.1 88 0.0019 25.3 4.1 21 139-159 255-275 (293)
97 PF00101 RuBisCO_small: Ribulo 29.1 49 0.0011 22.8 2.1 18 142-159 59-76 (99)
98 COG1560 HtrB Lauroyl/myristoyl 28.3 85 0.0018 26.0 3.8 40 116-159 250-289 (308)
99 PF13410 GST_C_2: Glutathione 28.2 1.3E+02 0.0028 18.0 3.9 23 134-156 4-26 (69)
100 cd03527 RuBisCO_small Ribulose 28.1 57 0.0012 22.5 2.3 18 142-159 60-77 (99)
101 PRK14684 hypothetical protein; 28.1 1.7E+02 0.0037 20.7 4.9 67 83-157 24-90 (120)
102 PRK12497 hypothetical protein; 26.9 1.9E+02 0.0042 20.1 5.0 67 83-157 24-90 (119)
103 PRK14682 hypothetical protein; 25.7 2.1E+02 0.0045 20.1 4.9 67 83-157 22-89 (117)
104 smart00592 BRK domain in trans 23.7 68 0.0015 18.7 1.8 12 146-157 26-37 (45)
105 PF15650 Tox-REase-9: Restrict 23.7 77 0.0017 21.4 2.2 28 51-86 25-52 (89)
106 PRK14686 hypothetical protein; 23.7 2.5E+02 0.0054 19.7 5.0 67 82-156 22-88 (119)
107 PF03000 NPH3: NPH3 family; I 22.8 56 0.0012 26.4 1.7 16 142-157 220-235 (258)
108 PF11687 DUF3284: Domain of un 22.4 2.8E+02 0.006 19.3 10.6 99 8-125 3-104 (120)
109 PRK08905 lipid A biosynthesis 22.3 1.4E+02 0.003 24.0 4.0 22 138-159 244-265 (289)
110 PRK08025 lipid A biosynthesis 22.0 1.3E+02 0.0029 24.3 3.8 21 139-159 267-287 (305)
111 cd08909 START_STARD13-like C-t 20.3 4.2E+02 0.009 20.5 12.7 119 4-127 52-179 (205)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.1e-42 Score=258.61 Aligned_cols=150 Identities=37% Similarity=0.594 Sum_probs=137.1
Q ss_pred CccEEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCC-cEEEEEeecCCceeeeEEEEeeeeccc
Q 044920 1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAG-SIRQINVVEGNQVKCSKNRVDALDLEN 79 (160)
Q Consensus 1 M~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~G-svR~~~~~~g~~~~~~kErl~~~D~~~ 79 (160)
|++++++.|+++++||+++|++++ +.++++|+++|++|++++++||||++| |||.|+|.+|++...+|||++.+|+++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence 999999999999999999999997 788889999999999999999998887 999999999999899999999999999
Q ss_pred ceEEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044920 80 FSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQN 155 (160)
Q Consensus 80 ~~~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~ 155 (160)
++++|+++||+++. .|++|..++++.|.++|+|+++|+++|++.++..++|+.. .+++.+|+|+||+||++|
T Consensus 80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~---~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKY---LDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHH---HHHHHHHHHHHHHHHhcC
Confidence 99999999999987 5999999999999999999999999999999876444332 357999999999999998
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=2.7e-37 Score=228.71 Aligned_cols=147 Identities=39% Similarity=0.590 Sum_probs=128.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccch-hhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceE
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIP-KLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY 82 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p-~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
++++++++|+||||+||++++ ||.+.+| .|+| +|++|++++|+|++||||.|+|.+|++.++++|||+.+|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 478999999999999999997 9984344 5666 899999999999999999999998877789999999999999999
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQN 155 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~ 155 (160)
+|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++.++|+.. ++.+..++++++.|++.+
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEI---KAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHH---HhHHHHHHHHHHHHHhcC
Confidence 9999999987546999999999999988899999999999998764444433 358888899999998753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.82 E-value=1.9e-18 Score=123.59 Aligned_cols=138 Identities=23% Similarity=0.327 Sum_probs=112.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
.++.+++|+||+++||+++. |+.+ +++|+|+ +.+++++++..++|+++.+.+..| ..++++++.+|+.++++.|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS-DFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh-CcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEE
Confidence 47889999999999999997 9999 8999996 788888876556899999998765 3788999999998789999
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHH
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYL 152 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l 152 (160)
++.+++. ++.++.+++++.|.++|+|.|+|+.+|++.+. .+.+.......+.....++.|.+++
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988743 37788999999999887899999999999865 2333323344556677777777765
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.73 E-value=1.4e-15 Score=108.61 Aligned_cols=108 Identities=26% Similarity=0.485 Sum_probs=88.3
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceE
Q 044920 3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY 82 (160)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
+.+++.++.|+|||++||+++. |+.+ +++|+|+ +.++++.+++ ++|..+.+... | + ..+++++..+|++++.+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~-g-~-~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLS-DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVA-G-R-GTVREEITEYDPEPRRI 73 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHT-TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEEC-S-C-SEEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHHh-Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEec-c-c-cceeEEEEEecCCCcEE
Confidence 4688999999999999999997 9999 9999995 8899987633 44655666644 2 1 37899999999879999
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEE
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~ 123 (160)
.|++. . .++.++..++++.|.++| |.|+|+.+|++
T Consensus 74 ~~~~~--~---~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV--P---SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEE--S---SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEE--e---cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 99995 1 247789999999999865 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=7.2e-15 Score=106.54 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=95.6
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCC----ceeeeEEEEeeeecccce
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN----QVKCSKNRVDALDLENFS 81 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~----~~~~~kErl~~~D~~~~~ 81 (160)
++.++.|+||+++||+++. |+.+ +|+|+|+ +++++++++.+ .+....+....+. -...+..++...++..+.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~-D~~~-~~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (144)
T cd08866 1 VVARVRVPAPPETVWAVLT-DYDN-LAEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPRE 76 (144)
T ss_pred CeEEEEECCCHHHHHHHHh-Chhh-HHhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence 3578999999999999997 9999 9999996 88999887653 1221111100000 002345556666666889
Q ss_pred EEEEEEecCcCCcCceeEEEEEEeeecCC-CCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044920 82 YKYSLIEGDVLMDKLEKISYDVKFEPTAD-GGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVENYL 152 (160)
Q Consensus 82 ~~y~i~eg~~~~~~~~~y~~ti~v~p~~~-g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e~~l 152 (160)
+.|++++|+ +..|.+++++.|.++ ++|.++|+.++++... .|...++ .....+..+++.|.+.+
T Consensus 77 i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 77 LDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred EEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998774 667899999999988 6899999999998753 3333443 34445567777776654
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.63 E-value=3.4e-14 Score=102.74 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=93.2
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeec-CCceeeeEEEEeeeecccceEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~~y 84 (160)
++++++|+||+++||+++. |+.+ +|+|+|. .+++.++++++...++.+.... |.... . +....+|++.+++.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHT-W-TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEE-E-EEEEEEcCCCCEEEE
Confidence 4688999999999999997 9999 9999996 4555554432222466566653 33222 2 344557887888999
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHHHH
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVENY 151 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e~~ 151 (160)
...++..+ +..+.++++|.|.++++|.|+|+.+|++....+.+...+ +.....+..+++.|-++
T Consensus 75 ~~~~~~~~---~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 139 (142)
T cd08861 75 RQEEPPPP---VASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAA 139 (142)
T ss_pred EEeeCCCC---hhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHH
Confidence 98775432 778999999999987899999999999986543322222 22223334555555443
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=2.4e-13 Score=97.43 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=82.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCC-CCCCcEEEEEeecCCceeeeEEEEeeeecccceE
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY 82 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
.+++.++.|+||+++||+++. |+.+ +|+|+|. +.++++++++ ++.+....+.+..++-.....-+++ .++ .+++
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i 76 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLA-DVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV 76 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHh-Chhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence 478999999999999999997 9999 9999995 8899986554 3333344555543321111222222 223 6789
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcC
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 125 (160)
+|+..++. +..++.+++++.|.++ +|.|+|+.++++..
T Consensus 77 ~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 77 SWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred EEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 99998775 2677899999999976 79999999999865
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=2.9e-13 Score=96.38 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=94.7
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCC-CCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
++.++.|+||+++||+++. |+.+ +++|.|+ +.+++.+.+. .++|+...+....++..-.++++++.+|+ ++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA-DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHH-Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEE
Confidence 3578899999999999997 9999 9999996 6777876543 46799988877543322357889998875 568888
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVENYL 152 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e~~l 152 (160)
...++. + .+..++++.|.++ +|.++|+.+|+...-.......+ ......+..+++.|.+++
T Consensus 77 ~~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 77 RGSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred EecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 876542 2 3689999999865 79999999999732111111122 223334455555555543
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.56 E-value=1.9e-13 Score=98.81 Aligned_cols=135 Identities=18% Similarity=0.230 Sum_probs=98.8
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
++.++.|+||+++||+++. |+.+ +|+|+|+ +.+++++++++ .+...++.+.-++....+..++. +++ .++++++
T Consensus 1 ~~~s~~i~ap~~~v~~~i~-D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~ 74 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVA-DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAE 74 (138)
T ss_pred CeEEEEcCCCHHHHHHHHH-HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEE
Confidence 3678999999999999997 9999 9999996 88999998765 34555566553332234445554 666 6688898
Q ss_pred EEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044920 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVENYLM 153 (160)
Q Consensus 86 i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e~~l~ 153 (160)
.++|. ++.+.+++++.|.++|+|.|+|..+|++.+.. +...+ .-..+....+++++++.+.
T Consensus 75 ~~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l--~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 75 LVDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL--LEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred ecCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88773 66789999999998889999999999997532 22222 2334556677777776554
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.49 E-value=5.4e-12 Score=90.04 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=83.4
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecC-CceeeeEEEEeeeecccceEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-NQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~~y 84 (160)
++.++.|+||+++||+++. |+.+ +++|+|. +..++... .++|+...+.+..+ +....+.+++.++|+. +++.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT-DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHh-cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 6789999999999999997 9999 8999985 55554321 46788888877543 2324677888888875 48889
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEc
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK 124 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 124 (160)
+...++.. ......+++|.|.++++|+++|+..|...
T Consensus 76 ~~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 76 RGGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred EecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 98666532 23467899999987779999999888653
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.49 E-value=5.8e-12 Score=90.08 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=81.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
+++.++.|+||+++||+++. |+.+ +|+|+|+ +.++++..+..++|+...++...+ ..+..++.++++.+ ++++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~~-~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPGH-SFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCCC-EEEE
Confidence 57889999999999999997 9999 9999996 788887754326787766665432 25667888888665 5777
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEE
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~ 123 (160)
+... + ...+..++++.+.++++|.++|+.+|..
T Consensus 75 ~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~ 107 (138)
T cd08862 75 TGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSG 107 (138)
T ss_pred EecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence 6532 1 2345689999998767999999988874
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=6.8e-12 Score=87.27 Aligned_cols=135 Identities=19% Similarity=0.287 Sum_probs=96.3
Q ss_pred EEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCC-CCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEE
Q 044920 7 TDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (160)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
+.++.|++|+++||+++. |+.+ +++|+|+ +.++++.++. ...|....+.+..+. ....+.++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEE
Confidence 568899999999999997 9999 9999996 7788877654 356666666664222 1356778887776 6688899
Q ss_pred EEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCcc--CCHHHHHHHHHHHHHHHHHHHH
Q 044920 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFV--LTEEEIKEGKEKSLAMYKVVEN 150 (160)
Q Consensus 86 i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~--~~~~~~~~~~~~~~~~~k~~e~ 150 (160)
...++.. ..+..++++.+.++++|.++|+.++.+..... ..+...+...+.+..+++.++.
T Consensus 77 ~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 77 VTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred EecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 8876643 46889999999976689999999999876432 2222223333444555555544
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.42 E-value=3.1e-11 Score=89.12 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=83.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCC-CCCcEEEEEe-ecCCceeeeEEEEeeeecccceE
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG-GAGSIRQINV-VEGNQVKCSKNRVDALDLENFSY 82 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
..+++++|++||++||+++. |+.+ +|.|+|. +.++++++.++ +.|+.-++.. ..|....+..|+ .+|+..+++
T Consensus 2 ~~~~si~i~a~~~~v~~lva-Dv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTN-DIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHHH-hhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEE
Confidence 46789999999999999997 9999 9999996 78889887653 4453222222 233333333443 278888888
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCH
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTE 131 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~ 131 (160)
.++-.. .. ++.+..++++|+|.++ +|.|++..+|+..++.+...
T Consensus 77 ~~~~~~-~~---p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~~~~ 120 (146)
T cd08860 77 RARRVE-TG---PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGAPVDD 120 (146)
T ss_pred EEEEec-CC---CcceeeeeEEEEECCC-CEEEEEEEEEEECCCCccch
Confidence 874211 11 3888999999999966 49999999999876554433
No 14
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.39 E-value=1.3e-11 Score=89.37 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=91.6
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCC--CCCCcEEEEEeec-CCceeeeEEEEeeeecccceE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD--GGAGSIRQINVVE-GNQVKCSKNRVDALDLENFSY 82 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~--g~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~ 82 (160)
++.++.|+||+++||+++. |+.+ +|+|.|.... .....++ -++|+..++.+.. |++ ..+..+++.+++.+ ++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LI 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-Cccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EE
Confidence 6788999999999999997 9999 9999985222 2222333 3788888888764 443 35666788777765 68
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHH
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYL 152 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l 152 (160)
+|+..-.+.. ......++++.|.++|+|+++++.+|...+.........+.........++.|++||
T Consensus 77 ~~~~~~~~~~---~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQE---PGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCCC---CCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 8885321211 234567889999877889999999988654311000100112335566777777765
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.39 E-value=2.9e-11 Score=86.44 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=90.7
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
+..+++|+||+++||+++. |+.+ +|+|+|+ +..++.....| |+.+.+....++....+..+++.+|+. +.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence 6788999999999999997 9999 9999996 22333222222 666655544333234678888988865 579999
Q ss_pred EEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHH
Q 044920 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYL 152 (160)
Q Consensus 86 i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l 152 (160)
...++.+ +.-....++++.|.+ ++|.++|+.++.+.... ..............++..|.+++
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 76 WAFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred ecccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 8776531 134578899999997 57999999999875321 11222233344455555555554
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.38 E-value=5.3e-11 Score=85.54 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=77.0
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
+++.++.|++|+++||+++. |+.+ +++|+|+ +++++.+++++ ......+.+.+-+..-..+-++..+|+. +++.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN-DPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTI 76 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc-CHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEE
Confidence 57889999999999999997 9999 9999996 77777665331 1111112221111111224556655554 46777
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCC
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN 126 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 126 (160)
+....+.. ....+..++++.|. +++|.++|+.+|++.+.
T Consensus 77 ~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 77 TGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEccC
Confidence 76443322 25679999999998 67899999999998653
No 17
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.36 E-value=7.4e-11 Score=84.06 Aligned_cols=126 Identities=21% Similarity=0.338 Sum_probs=85.2
Q ss_pred ecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEEEEecCc
Q 044920 12 SPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDV 91 (160)
Q Consensus 12 i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~ 91 (160)
|+||+++||+++. |+.+ +|.|+|. ++++++++.++. +..-.+....++....+..++.. +...+ +.+...+|+
T Consensus 1 V~ap~~~V~~~i~-D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTE-DPPER-IRFEQISGP- 73 (130)
T ss_dssp ESS-HHHHHHHHT-TGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEE-ECTTT-EEEESSETT-
T ss_pred CCCCHHHHHHHHH-HHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEE-EEeee-eeeeecCCC-
Confidence 7899999999997 9999 9999995 889999977754 33335555543322345556553 34443 777776764
Q ss_pred CCcCceeEEEEEEeeecCC--CCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHH
Q 044920 92 LMDKLEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVV 148 (160)
Q Consensus 92 ~~~~~~~y~~ti~v~p~~~--g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~ 148 (160)
++.+.+++++.|.++ |+|.++++.+|+.....+.+...+. ........++++|
T Consensus 74 ----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 74 ----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp ----EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999975 3688888888888666555444332 2333334454444
No 18
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.34 E-value=8.9e-11 Score=84.00 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=78.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
+++.++.|+||+++||+++. |+.+ +|+|.|+ +.+++++.+. +....+.+..|.. ..+..++..+++ ++.+.|
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~-D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~ 72 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWR-DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAW 72 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHh-Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEE
Confidence 36789999999999999997 9999 9999996 7888876441 2222233322433 345566665555 446889
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcC
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 125 (160)
....|. + .+.+++++.|.++++|.++++..|++..
T Consensus 73 ~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 73 RSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred EECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 876543 3 4679999999877789999999999765
No 19
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=1.8e-10 Score=83.90 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=80.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhccccee--EEEEE--cCCCCCCcEEEEEeecCCceeeeEEEEeeeecccc
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVK--SIEIF--EGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF 80 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~--s~~~~--eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~ 80 (160)
+++.++.|++|+++||+++. |+.+ +|+|+|.... .++.. +++.++|+...++...+. .....++..+++ ++
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~-D~~~-~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~~ 77 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVN-DLKN-WPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-NE 77 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHh-Cccc-CcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-Cc
Confidence 67899999999999999997 9999 9999994321 12221 233468888777765421 133456666664 56
Q ss_pred eEEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcC
Q 044920 81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (160)
Q Consensus 81 ~~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 125 (160)
++.|+...++.+. .++..++++.|. +++|.++|+.+|+...
T Consensus 78 ~i~~~~~~~~~~~---~~~~~~~~~~~~-~~gT~v~~~~~~~~~~ 118 (150)
T cd07818 78 RIEYELRFIKPFE---ATNDVEFTLEPV-GGGTKVTWGMSGELPF 118 (150)
T ss_pred EEEEEEEecCCcc---ccceEEEEEEEc-CCceEEEEEEEecCCc
Confidence 7999987544321 257899999999 5579999999999654
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=7.6e-11 Score=85.34 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=83.5
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCC-C--CCCcEEEEEeecCC-ceeeeEEEEeeeecccce
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-G--GAGSIRQINVVEGN-QVKCSKNRVDALDLENFS 81 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~-g--~~GsvR~~~~~~g~-~~~~~kErl~~~D~~~~~ 81 (160)
++.++.|+||+++||+.+. |..+ +|+|+|+ +.++++++.+ | .+|+.-.+.+..++ +. ..+-+++.+++ ++.
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p-~~~ 75 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEP-PRR 75 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcC-CCe
Confidence 4678999999999999997 9999 9999996 7788887433 2 45888888887654 33 34556666654 456
Q ss_pred EEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEE
Q 044920 82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123 (160)
Q Consensus 82 ~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~ 123 (160)
++.+...|+ +.++..++.+.|.++ +|.++++++|+.
T Consensus 76 f~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~ 111 (137)
T cd07820 76 FVDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL 111 (137)
T ss_pred EEEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence 888877664 556788999999866 799999999997
No 21
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=6.2e-10 Score=81.38 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=78.0
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEc--CCCCCCcEEEEEeecC-CceeeeEEEEeeeecccceE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFE--GDGGAGSIRQINVVEG-NQVKCSKNRVDALDLENFSY 82 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~e--G~g~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~ 82 (160)
++.+..|+||+++||+++. |+.+ +|+|+|+ +.++++++ ++.++|+..++..... +....+.-++...+ ..+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t-D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV-DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHHh-Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcEE
Confidence 5677899999999999997 9999 9999996 88888886 3346777765554322 21123445555554 45578
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcC
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 125 (160)
.++. +|++ . ...+++|.|.++ +|.|+++.+++..+
T Consensus 79 ~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 8885 5642 2 368899999754 79999999999754
No 22
>PRK10724 hypothetical protein; Provisional
Probab=99.26 E-value=4.7e-10 Score=83.97 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=95.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEE
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK 83 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
..+..++.|++|++++|+++. |..+ .|+|+|. ..++++++.++. +.+..++.+-++-...+..|.. +++.+ ++.
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~-Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVN-DVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHH-HHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence 478889999999999999997 9999 9999996 677788766532 3345555543332345556655 45444 799
Q ss_pred EEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHHH
Q 044920 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVEN 150 (160)
Q Consensus 84 y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e~ 150 (160)
+..++|+ ++.+.+.+++.|.++++|.|++..+|+.... .....+ ....+.+..|.+++++
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~--l~~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK--LIELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEchH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998884 7789999999999877899999999996542 111112 2334455566666665
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=7.5e-10 Score=80.94 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=81.8
Q ss_pred EEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeee--EEEEeeeecccceEEE
Q 044920 7 TDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCS--KNRVDALDLENFSYKY 84 (160)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~--kErl~~~D~~~~~~~y 84 (160)
+.+++|+|||++||+++. |+.+ ++.|+|+ +++++..+ ++.. .-.+++.-|+-...+ +=++..++++.+++++
T Consensus 2 ~~~~~v~a~pe~vw~~l~-D~~~-~~~~~pg-~~~~~~~~-~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL-DIER-VAPCLPG-ASLTEVEG-DDEY--KGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CceEEecCCHHHHHHHhc-CHHH-HHhcCCC-ceeccccC-CCeE--EEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 568899999999999997 9999 8999996 77777543 2221 223333322110112 2245656656778877
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCc-cCCHHHH-HHHHHHHHHHHHHHHHH
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNF-VLTEEEI-KEGKEKSLAMYKVVENY 151 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~-~~~~~~~-~~~~~~~~~~~k~~e~~ 151 (160)
+.-..+....+--....++++.| .+++|.++|+++++..+.. ......+ +.....+..+++.|.+.
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 76 EATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 75431111111214677888888 4568999999999876542 1222223 23333445555555544
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.05 E-value=9.6e-09 Score=75.57 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=97.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
.++.+..|++|+++||+.+. |+.. +..-+|+ ++|++.. |+.-.+ .-.+.+++=..--..+=++..+|+..++++.
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~-dpe~-~a~ciPG-~qs~e~~-g~e~~~-~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLN-DPEQ-VAACIPG-VQSVETN-GDEYTA-KVKLKIGPLKGTFSGRVRFVNVDEPPRSITI 76 (146)
T ss_pred cccceEEecCCHHHHHHHhc-CHHH-HHhhcCC-cceeeec-CCeEEE-EEEEeecceeEEEEEEEEEccccCCCcEEEE
Confidence 35678899999999999996 9999 8899997 9999854 552111 1122222111101234566777889999988
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCC-ccCCHHHHH-HHHHHHHHHHHHHHHHHhc
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-FVLTEEEIK-EGKEKSLAMYKVVENYLMQ 154 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~-~~~~~~~~~-~~~~~~~~~~k~~e~~l~~ 154 (160)
+.-+|..- ++-+..+.+++.|.+++ |++.|.+.-+..+- ...-...++ .+.+.+...+..|.++|..
T Consensus 77 ~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 77 NGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred Eeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88554432 47778899999999776 99999998887553 223334443 4566778888888887754
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.95 E-value=8.2e-08 Score=70.10 Aligned_cols=134 Identities=19% Similarity=0.263 Sum_probs=82.2
Q ss_pred EEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCC-c-eeeeEEEEeeeecccceEEEEE
Q 044920 9 EYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN-Q-VKCSKNRVDALDLENFSYKYSL 86 (160)
Q Consensus 9 e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~-~-~~~~kErl~~~D~~~~~~~y~i 86 (160)
+.+|++|+++||+++. |... +-..+|+ +++++.+. +.-.+. ++..-|. + .-..+=++..+|++++.. .++
T Consensus 2 s~~v~a~~~~vw~~l~-D~~~-l~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~ 73 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS-DPEN-LARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEF 73 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHH-HHHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEE
T ss_pred cEEecCCHHHHHHHhc-CHHH-HHhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eee
Confidence 6789999999999996 9998 8899997 88888775 411111 1222121 1 112344566677777652 444
Q ss_pred EecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCC-ccCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044920 87 IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-FVLTEEEIK-EGKEKSLAMYKVVENYL 152 (160)
Q Consensus 87 ~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~-~~~~~~~~~-~~~~~~~~~~k~~e~~l 152 (160)
-..+.. .-.+..+++++...++++|.+.|+++++..+- .......++ .+......+++.|++.|
T Consensus 74 ~g~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 74 EGRGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEEECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333332 24456677777776666699999999998764 333444443 44455567777766654
No 26
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.85 E-value=3.1e-08 Score=74.89 Aligned_cols=108 Identities=15% Similarity=0.233 Sum_probs=86.7
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEee-cC-CceeeeEEEEeeeecccce
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EG-NQVKCSKNRVDALDLENFS 81 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g-~~~~~~kErl~~~D~~~~~ 81 (160)
..++.+++|++|+++||...+ |+.+ +|.||-+ ++|+++.+... -+|+.. ++ ..++ ++-+|+ -|.++.+
T Consensus 70 i~v~~~V~I~kPae~vy~~W~-dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~-Wea~it-~d~~~e~ 139 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWR-DLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVE-WEAEIT-KDIPGER 139 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHH-hhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEE-Eeehhh-ccCCCcE
Confidence 568899999999999999997 9999 9999984 99999886653 466664 34 4444 445555 5789999
Q ss_pred EEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCC
Q 044920 82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN 126 (160)
Q Consensus 82 ~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 126 (160)
|.++-++|.-+++ ++.++|.+..+..|+|+.+.+|.+-++
T Consensus 140 I~W~Sl~Ga~v~N-----sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 140 IQWESLPGARVEN-----SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred EeeecCCCCcCCC-----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 9999999975543 588999999888899999999997554
No 27
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.80 E-value=1.8e-07 Score=67.42 Aligned_cols=139 Identities=14% Similarity=0.142 Sum_probs=80.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
.++.++.|+||+++||+++. |+.. +++|+|... ....-+.+..| .+.+.++ ......-++..+++.+ ++.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~p~~-~l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVDPPR-RFSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-Chhh-hhhcccccC--CCcccCCccee---EEecCCC-CccceEEEEEEeCCCc-EEEE
Confidence 57889999999999999997 9998 899999632 11111222222 3333321 1013345666666555 6778
Q ss_pred EEEecCc---CC-cCceeEEEEEEeeecCCCCCeEEEEEE-EEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044920 85 SLIEGDV---LM-DKLEKISYDVKFEPTADGGSKNTMTST-YYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQ 154 (160)
Q Consensus 85 ~i~eg~~---~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~-y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~ 154 (160)
+...... .+ ..-.....+++|.+.+ ++|.|+++.. |...++... ........+.-..++..|++||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~-~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERR-AEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHH-HHHHHhhhhhHHHHHHHHHHHhcC
Confidence 7643320 00 0122356889999985 5699999976 432211100 011122334557888888888753
No 28
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.79 E-value=2.5e-07 Score=68.58 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEE
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK 83 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
.+++.++.|+||+++||+++. |+.+ ++.|+|.. ..+-.+|...++.+...+. .....++.++|+.+ ++.
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~~-~l~ 79 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALT-DPER-LARWFAPG-------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPPR-LLA 79 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHc-CHHH-HHhhcCCC-------CCCcccCceEEEEecCCCC-CccceEEEEEcCCc-EEE
Confidence 468899999999999999997 9998 99999842 1233456666666654211 24566777776664 777
Q ss_pred EEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044920 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156 (160)
Q Consensus 84 y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~ 156 (160)
|+...++ . ....+++|.+.+ ++|.++.+.++.+... ......+.-..++..|.+||-..+
T Consensus 80 ~~~~~~~-~-----~~~~~~~l~~~~-~gT~v~~~~~~~~~~~------~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 80 FTWGEGG-G-----ESEVRFELAPEG-DGTRLTLTHRLLDERF------GAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEecCCC-C-----CceEEEEEEEcC-CCEEEEEEEeccCchh------hhhhhcccHHHHHHHHHHHHcCCC
Confidence 8875443 1 235788888875 5799988888765331 111123455677888888877654
No 29
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.64 E-value=9e-06 Score=61.94 Aligned_cols=144 Identities=12% Similarity=0.077 Sum_probs=89.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCc---eeeeEEEEeeeecccc
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALDLENF 80 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~ 80 (160)
..+..+..|++||+++|+++. |.+. .|+|.|. +.++++++..+.--.+-.+.+....+ ...+-.+-...+..+.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~-d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLR-DTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHh-hhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 567788899999999999997 9998 8999995 88889887654212333444432221 1222222112222233
Q ss_pred eEEEEEEecCc--CC-cC---ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044920 81 SYKYSLIEGDV--LM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVENYL 152 (160)
Q Consensus 81 ~~~y~i~eg~~--~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e~~l 152 (160)
.+.......+. ++ .+ ...+.+.+.++|.++++|.+++...+++.+. .|...++ ........++++|++.+
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444433322 21 11 4667788999999888999999999988753 3344443 34445567777776653
No 30
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.62 E-value=2.2e-06 Score=60.92 Aligned_cols=134 Identities=14% Similarity=0.038 Sum_probs=80.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
|++.++.|+||+++||+++. |... ++.|.++.. .+++-.+|.--.+....... ..+.=++.+++ +.+++.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEE
Confidence 47789999999999999997 9998 899998621 12332344433444433111 13344566666 4556777
Q ss_pred EEEecCcCC-cCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044920 85 SLIEGDVLM-DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLM 153 (160)
Q Consensus 85 ~i~eg~~~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 153 (160)
+...+...+ ..-.....++.+.|.++ +|+++.+.+-.+.+ +............+++.|.++|-
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHhc
Confidence 764333210 01234678888888754 67777776543221 11222334456778888888763
No 31
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.57 E-value=5.6e-06 Score=60.26 Aligned_cols=140 Identities=12% Similarity=0.008 Sum_probs=82.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEee-cCCceeeeEEEEeeeecccceEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
++.+..++||+++||+++- |... +.+|++..--.+...+.|-.+|..-.+.+. +++....+.=++.++++.+ ++.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~T-dpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHT-DPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhC-CHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence 5667899999999999996 9887 788886532223334445445555555553 2332223344566676654 5556
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQ 154 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~ 154 (160)
+-.-.+..+ .....++++.+.+ |+|.++.+..|...... .........+.-...+..|++||.+
T Consensus 79 t~~~~~~~~---~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~~--~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 79 TEEFEGLPD---GVALETVTFTELG-GRTRLTATSRYPSKEAR--DGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred EeEecCCCC---CceEEEEEEEECC-CCEEEEEEEEeCCHHHH--HHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 532222111 2346788999875 67999988665321100 0001112345667888999998863
No 32
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.56 E-value=3.6e-06 Score=60.90 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=78.1
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcc-cceeEEEEEcCCCCCCcEEEEEee-cCCceeeeEEEEeeeecccceEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMP-QAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYK 83 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P-~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
++.+..|+||+++||+++. |... +.+|++ ..+. +...+.+..+|..-.+.+. +++..-...=++.++++.+ ++.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~-l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEH-LAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHH-HhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence 5667899999999999996 9887 788874 2222 2222233344444444442 2332112234667776655 677
Q ss_pred EEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044920 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVENYLM 153 (160)
Q Consensus 84 y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e~~l~ 153 (160)
|+...++ . ....++++.|.+ ++|.++.+..|...... ...+ ....+....++..|++||.
T Consensus 78 ~t~~~~~-----~-~~~v~~~~~~~~-~gT~ltl~~~~~~~~~~---~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGP-----P-RFRLTVTFEEQG-GKTRLTWRQVFPTAAER---CEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCC-----C-cEEEEEEEEECC-CCEEEEEEEEcCCHHHH---HHHHHhCHHHHHHHHHHHHHHHHh
Confidence 8863331 1 245788999875 67999988765321100 0001 1123445677888888874
No 33
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.56 E-value=1.6e-05 Score=57.76 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=80.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhccc-ceeEEEEEcCCCCCCcEEEEEee-cCCceeeeEEEEeeeecccceEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQ-AVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYK 83 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~-~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
++.+..++||+++||+++. |... +.+|+.+ ---.++..+.+-.+|..-.+.+. .++......=++.++|+.+ ++.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEE
Confidence 4566789999999999997 9887 8888853 11122333344344544444443 3333223344666676655 566
Q ss_pred EEEE--ecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044920 84 YSLI--EGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLM 153 (160)
Q Consensus 84 y~i~--eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 153 (160)
|+-. .++.. -.....++.+.+.+ |+|.++.+..+-..++. +......+.-..++..|+++|.
T Consensus 79 ~t~~~~~~~~~---~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGTL---LSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCcc---ccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 6642 22221 11245788888875 57999998776332221 1111223455778888888874
No 34
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.53 E-value=1.6e-05 Score=58.00 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=79.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEe--ec------CCceeeeEEEEeeee
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINV--VE------GNQVKCSKNRVDALD 76 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~--~~------g~~~~~~kErl~~~D 76 (160)
+++.+..|+||+++||+++. |... +.+|++..=-.+.....+-.+|-.-.+.+ .. .+......=++.+++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDA-LAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHH-HhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence 35667889999999999996 9998 88888632112222233323443333333 22 111123344677777
Q ss_pred cccceEEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044920 77 LENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLM 153 (160)
Q Consensus 77 ~~~~~~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 153 (160)
+.+ ++.|+..-.+... + .....++.+.+.+ ++|.++++...-+.. .... ...+.-..++..|++||.
T Consensus 79 p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~---~~~~---~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 79 PNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG---IPPE---DCELGWQESLANLAALVE 145 (146)
T ss_pred CCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch---hhhh---HHHHHHHHHHHHHHHHhc
Confidence 665 6777743222111 1 2346888998885 679999887643211 1111 224566788888888875
No 35
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.42 E-value=2e-05 Score=57.38 Aligned_cols=140 Identities=9% Similarity=-0.012 Sum_probs=76.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEee-cCCceeeeEEEEeeeecccceEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
+..++.|+||+++||+++. |... +.+|++..=-++...+.|-.+|..-++.+. +++..-...=++.++|+.+ ++.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~-~l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPEL-LKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGE-RLVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHH-HhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCC-EEEE
Confidence 4567899999999999996 9887 778876320012212233233434444443 3332122345677787766 5666
Q ss_pred EE--EecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044920 85 SL--IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVENYLM 153 (160)
Q Consensus 85 ~i--~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e~~l~ 153 (160)
+- .++..+. .-.....++++.|.+ ++|.++.+..+.... ..+... ....+.-..++..|++||.
T Consensus 79 t~~~~~~~~~~-~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~~~---~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPA-EKPFMTAIITFEDEG-GGTRYTARARHWTEA---DRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCC-CCCcEEEEEEEEecC-CcEEEEEEEEeCCHH---HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 63 2221111 011146789999974 579998875542110 001111 0113456788888888875
No 36
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.38 E-value=1.7e-05 Score=56.88 Aligned_cols=128 Identities=15% Similarity=0.151 Sum_probs=76.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeE--EEEEcCCCCCCcEEEEEee-cCCc-eeeeEEEEeeeecccc
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKS--IEIFEGDGGAGSIRQINVV-EGNQ-VKCSKNRVDALDLENF 80 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s--~~~~eG~g~~GsvR~~~~~-~g~~-~~~~kErl~~~D~~~~ 80 (160)
|++.++.++||+++||+++. |... +.+|+++ ... +...+.|-.+|..-.+.+. +++. ...+.=++.++++.+
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~- 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHK- 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCC-
Confidence 56788999999999999996 9887 8999653 111 1112234345555455442 2221 112334556676555
Q ss_pred eEEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044920 81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLM 153 (160)
Q Consensus 81 ~~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 153 (160)
++.|+..++ ...++++.|.+ ++|.++.+ +...+.. ..+. ..+.-..++..|++||.
T Consensus 77 ~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~--~~~~---~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENEN--PVEM---QRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCC--cHHH---HHHHHHHHHHHHHHHhh
Confidence 777886321 25789999975 57888875 4432211 1222 23455778888888874
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.38 E-value=3.1e-05 Score=56.59 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=74.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccce-------eEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecc
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAV-------KSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLE 78 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v-------~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~ 78 (160)
++.++.|+||+++||+++. | . +.+|++..- ..|++. -.+|....+... ++. ....=++.++++.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~d---~~~GG~~~~~~~-~g~-~~~~g~v~~v~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVFE---PRAGGRWYEIGE-DGT-ECEWGTVLAWEPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEEc---ccCCcEEEEecC-CCc-EeceEEEEEEcCC
Confidence 6789999999999999997 7 3 567765321 223322 123322223222 222 1223466777766
Q ss_pred cceEEEEEE-ecCcCC-cCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCcc-CCHHHHHHHHHHHHHHHHHHHHHH
Q 044920 79 NFSYKYSLI-EGDVLM-DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFV-LTEEEIKEGKEKSLAMYKVVENYL 152 (160)
Q Consensus 79 ~~~~~y~i~-eg~~~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~-~~~~~~~~~~~~~~~~~k~~e~~l 152 (160)
+ ++.|+-. ..+..+ ... .-..|+++.|.++++|.++.+...-...... ..........+.-..++..|++||
T Consensus 73 ~-~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 73 S-RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred C-EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 5 5667753 211111 011 2368899999864689999888865432110 101111112234456778887776
No 38
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.27 E-value=1.9e-05 Score=57.95 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=84.2
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEE
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK 83 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
.+++++.-++.+|+++++++. |... .|..+|. -.+.++.+.++ ...+-.++.+-++=-+++.-|.. +++..++|.
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~-dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVN-DVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHH-HHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhh
Confidence 467888999999999999997 9999 9999996 55567776763 22455555543321245555644 556666777
Q ss_pred EEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcC
Q 044920 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (160)
Q Consensus 84 y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 125 (160)
-.+++|+ ++...++++++|.++++|.|....+|+...
T Consensus 77 ~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 77 MKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 7777775 777899999999878899999999999865
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.24 E-value=0.00011 Score=51.32 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=71.9
Q ss_pred cCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEEEEecCcC
Q 044920 13 PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVL 92 (160)
Q Consensus 13 ~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~~ 92 (160)
+||+++||+++. |... +.+|.+...... +-.+|..-++ ..+++......=+++++++.+ ++.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t-~~~~-~~~W~~~~~~~~-----~~~~Gg~~~~-~~~~g~~~~~~~~v~~~~p~~-~i~~~~~~~~~~ 71 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEG-LAQWFTTSEAEM-----DFRPGGSFRF-MDPDGGEFGFDGTVLEVEPPE-RIVFTWRMPDDP 71 (124)
T ss_dssp SSSHHHHHHHHH-SHHH-HHHHSEEEEEEE-----ECSTTEEEEE-EETTSEEEEEEEEEEEEETTT-EEEEEEEEETSS
T ss_pred CcCHHHHHHHHC-CHhH-HhhccCCCccee-----eeecCCEEEE-EecCCCCceeeEEEEEEeCCE-EEEEEEEccCCC
Confidence 699999999997 9887 889943212222 2233443333 224443223333477777666 577885433332
Q ss_pred CcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHH-HHHHHHHHHHHHHHHH
Q 044920 93 MDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKE-GKEKSLAMYKVVENYL 152 (160)
Q Consensus 93 ~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~~e~~l 152 (160)
. -.....+++|.+ .+++|.++.+.+-. ++....+. ....-..++..|.+||
T Consensus 72 ~--~~~~~v~~~~~~-~~~~T~l~~~~~~~------~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 D--GPESRVTFEFEE-EGGGTRLTLTHSGF------PDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S--CEEEEEEEEEEE-ETTEEEEEEEEEEE------HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred C--CCceEEEEEEEE-cCCcEEEEEEEEcC------CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 234588899999 46678888877322 11222222 4456677778888876
No 40
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00041 Score=51.16 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=75.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEE
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK 83 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
.++..+..|++|+++||+++. |... +.+|+.+--.+.+..-| .+....+....| +.....-++.++++.. +|.
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~T-dpe~-l~~W~~~~~~~~d~r~g---g~~~~~~~~~~g-~~~~~~~~~~~v~p~~-rIv 80 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALT-DPEL-LARWFMPGGAEFDARTG---GGERVRFRGPDG-PVHSFEGEYLEVVPPE-RIV 80 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhc-CHHH-HHhhcCCCCCccceecC---CceEEeeecCCC-CeeecceEEEEEcCCc-EEE
Confidence 578899999999999999997 9887 89998721100111111 122233333333 2234455666676555 566
Q ss_pred EEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHH--HHHHHHHHHHHHHHHh
Q 044920 84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEG--KEKSLAMYKVVENYLM 153 (160)
Q Consensus 84 y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~--~~~~~~~~k~~e~~l~ 153 (160)
|+-.-.+.-. +...-..++++++..+|+ +++..........+.....+.. .+.-..++..++++|.
T Consensus 81 ~tw~~~~~~~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 81 FTWDFDEDGE-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEeccCCCCC-cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 6653333211 123346788888876653 3333333333221111111111 4556778888887764
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.91 E-value=0.0004 Score=50.02 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=76.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
++.++.|+||+++||+++. |... +.+|++. -.+.++ .+|..-.+.+...++ .+.=++.++++. +++.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~-l~~W~~~-~~~~~~-----~~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEI-TTKFWFT-GSSGRL-----EEGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHH-hcccccc-CCCccc-----cCCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEE
Confidence 4678999999999999996 9887 7787553 223332 233333455543222 122255667555 477787
Q ss_pred EEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHH---HHHHHHHHHHHHHHHHHhcC
Q 044920 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIK---EGKEKSLAMYKVVENYLMQN 155 (160)
Q Consensus 86 i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l~~~ 155 (160)
-..++ +. -..++++.+.++|+|.++.+...-+.. .++..+ .....-..++..|++||...
T Consensus 71 w~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 71 WGDPG----EP--TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred ecCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 63321 12 357899999865789888875543221 111111 11234467788888888653
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.89 E-value=0.0011 Score=47.11 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=60.5
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEE
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS 85 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
++.+..|+||+++||+++. |... +.+|+.. ..+.+...| |..+ +.+|. +.=++.++++.. ++.|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~~-~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPGK-KIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCCC-EEEEE
Confidence 5678899999999999996 8887 8888864 223332222 2333 33331 233566676544 56666
Q ss_pred EEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEE
Q 044920 86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123 (160)
Q Consensus 86 i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~ 123 (160)
-.-.+... -..-..++.+.+. +++|.++.+...-+
T Consensus 67 w~~~~~~~--~~~s~v~~~l~~~-~~gT~ltl~~~g~~ 101 (126)
T cd08892 67 WRFKSWPE--GHYSTVTLTFTEK-DDETELKLTQTGVP 101 (126)
T ss_pred EEcCCCCC--CCcEEEEEEEEEC-CCCEEEEEEEECCC
Confidence 53222111 1124688888887 56788887766553
No 43
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.81 E-value=0.004 Score=48.50 Aligned_cols=145 Identities=10% Similarity=-0.046 Sum_probs=85.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEee-c--C--CceeeeEEEEeeeeccc
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-E--G--NQVKCSKNRVDALDLEN 79 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~--g--~~~~~~kErl~~~D~~~ 79 (160)
.+..+.+|++|++++|+++. |... -++|.+ .++++++++.-+.--.+-++.+. + . .+-..+--+-...+...
T Consensus 46 ~~~ge~~v~as~~~v~~ll~-D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVK-DPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHh-Ccch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 35567899999999999996 9998 899999 69999998754311133344332 2 2 22123322222223333
Q ss_pred ceEEEEEEec-CcCCcC-----ceeEEEEEEeeec---CCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHH
Q 044920 80 FSYKYSLIEG-DVLMDK-----LEKISYDVKFEPT---ADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVEN 150 (160)
Q Consensus 80 ~~~~y~i~eg-~~~~~~-----~~~y~~ti~v~p~---~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~ 150 (160)
..+.-+-+.- ..++.+ ...+.+-+.++|. ++|.|.++..+..+|.+++.| .-..+.+....-.+...|-.
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP-~~l~N~~~~~~p~~~~~~~~ 201 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP-AQLLSSLSKRQPLVIARLAL 201 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC-HHHHhHHHHhccHHHHHHHH
Confidence 3333332232 222111 3456778888998 777899999999999855434 33344334444455555555
Q ss_pred HHh
Q 044920 151 YLM 153 (160)
Q Consensus 151 ~l~ 153 (160)
||.
T Consensus 202 ~~~ 204 (205)
T cd08874 202 FLE 204 (205)
T ss_pred Hhh
Confidence 553
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.57 E-value=0.0012 Score=47.55 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=65.7
Q ss_pred ecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEEEEecCc
Q 044920 12 SPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDV 91 (160)
Q Consensus 12 i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~ 91 (160)
++||+++||+++- |... +.+|+-+.. +++ |-.+|..-.+ ..+. +.=+..++|+.+ ++.|+---.+.
T Consensus 1 f~ap~e~Vw~A~T-dp~~-l~~w~~~~~--~~~---d~~~GG~f~~--~~~~----~~G~~~ev~pp~-rlv~tw~~~~~ 66 (132)
T PTZ00220 1 FYVPPEVLYNAFL-DAYT-LTRLSLGSP--AEM---DAKVGGKFSL--FNGS----VEGEFTELEKPK-KIVQKWRFRDW 66 (132)
T ss_pred CCCCHHHHHHHHc-CHHH-HHHHhcCCC--ccc---cCCcCCEEEE--ecCc----eEEEEEEEcCCC-EEEEEEecCCC
Confidence 4799999999996 9887 778842111 221 1123332222 2221 222556676665 45555422221
Q ss_pred CCcCceeEEEEEEeeecCCCCCeEEEEEE-EEEcCCcc--CCHHHHHHHHHHHHH-HHHHHHHHHh
Q 044920 92 LMDKLEKISYDVKFEPTADGGSKNTMTST-YYTKGNFV--LTEEEIKEGKEKSLA-MYKVVENYLM 153 (160)
Q Consensus 92 ~~~~~~~y~~ti~v~p~~~g~s~v~W~~~-y~~~~~~~--~~~~~~~~~~~~~~~-~~k~~e~~l~ 153 (160)
.+... -..|+++.+.++|+|.++.+.. +....+.. ...+.. .+.-.. ++..|++||.
T Consensus 67 ~~~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~---~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 67 EEDVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERC---RNGWTQNFLDRFEKILG 127 (132)
T ss_pred CCCCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHH---HhChHHHHHHHHHHHhC
Confidence 11112 3588999997667899998877 43222111 111211 233344 6888888763
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.51 E-value=0.014 Score=46.45 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=88.7
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCC-CCCcEEEEEeec---CCceeeeEEEEee--eec
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG-GAGSIRQINVVE---GNQVKCSKNRVDA--LDL 77 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~GsvR~~~~~~---g~~~~~~kErl~~--~D~ 77 (160)
..+..+..+++|++++|+++. |... -++|.+. ..++++++.-+ ..+ +-++.+.. -.+-..+--+-.. .+.
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~-D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLS-DPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHh-Ccch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCC
Confidence 347788899999999999997 9998 8999995 88889886432 222 33333332 1221232222221 222
Q ss_pred cc-ceEEEEEEe-cCcCC-cC---ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHH
Q 044920 78 EN-FSYKYSLIE-GDVLM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENY 151 (160)
Q Consensus 78 ~~-~~~~y~i~e-g~~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~ 151 (160)
.+ ..+..+-+. ...++ .+ ...+.+-+.+.|.++++|.|+.....+|.-- +.-...+...-..+...|+..++|
T Consensus 153 ~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~-~~~~~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd08873 153 GDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLL-SYVTCNLAGLSALYCRTFHCCEQF 231 (235)
T ss_pred CCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCcc-ceeeecchhhhHHHHHHHHHHHHH
Confidence 22 223333233 11111 11 4567788999999888999999988887421 011122333345667888899999
Q ss_pred HhcC
Q 044920 152 LMQN 155 (160)
Q Consensus 152 l~~~ 155 (160)
|..|
T Consensus 232 ~~~~ 235 (235)
T cd08873 232 LVTN 235 (235)
T ss_pred hccC
Confidence 8765
No 46
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.38 E-value=0.028 Score=41.36 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=62.6
Q ss_pred EEEEEecCC-------HHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeeccc
Q 044920 7 TDEYTSPIS-------PARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLEN 79 (160)
Q Consensus 7 ~~e~~i~ap-------a~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~ 79 (160)
++.++||-| .+++|.-+..-..+ |..+-..+.+|++++.++. -..|.++|++. .++|++.. + +.
T Consensus 3 ~~tvpIN~p~~~p~LTr~QlW~GL~~kar~--p~~Fvp~i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt~-~-~~ 73 (141)
T cd08863 3 EHTVPINDPGNIPTLTRAQLWRGLVLRARE--PQLFVPGLDRCEVLSESGT-VLERELTFGPA----KIRETVTL-E-PP 73 (141)
T ss_pred cEEEecCCCCCCCccCHHHHHhHHHhhhCC--chhcccccceEEEEecCCC-EEEEEEEECCc----eEEEEEEe-c-CC
Confidence 445555543 56999998744444 4444336999999977743 46799999865 79999875 3 44
Q ss_pred ceEEEEEEe-cCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcC
Q 044920 80 FSYKYSLIE-GDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (160)
Q Consensus 80 ~~~~y~i~e-g~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 125 (160)
.++.|.+-. |+ +.++.+....+| -.-.++.|+-..
T Consensus 74 ~~v~f~~~~~g~---------~l~~~iee~~~g--~L~lrf~ye~~~ 109 (141)
T cd08863 74 SRVHFLQADAGG---------TLTNTIEEPEDG--ALYLRFVYETTL 109 (141)
T ss_pred cEEEEEecCCCC---------eEEEEeccCCCC--cEEEEEEEEecC
Confidence 578888755 22 233333333233 466677777754
No 47
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=97.19 E-value=0.053 Score=40.21 Aligned_cols=143 Identities=15% Similarity=0.060 Sum_probs=81.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCc---eeeeEEEEeeeecccc
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALDLENF 80 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~ 80 (160)
..+..+.++++|++++|+++. |... .++|.| .+.++++++..+..-.+.+..+....+ -..+--+-...++++.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~-d~~~-~~~w~~-~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLM-DIDL-RKKWDK-NFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHh-CCch-hhchhh-cceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 346678899999999999997 8777 899998 488888887653323455555543221 1122111122223222
Q ss_pred -eEEEEEEecCcCC---cCce--eEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHHHH
Q 044920 81 -SYKYSLIEGDVLM---DKLE--KISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVENY 151 (160)
Q Consensus 81 -~~~y~i~eg~~~~---~~~~--~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e~~ 151 (160)
.+...-++.+..+ ..+. .+.+-+.+.|.++++|.+++.+..++.+..| ...+ ....+....+.|.+..+
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP--~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP--KSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc--HHHHHhhhhhccHHHHHHHHHh
Confidence 2222222222111 1111 2245577888877899999999999887542 3333 23344445555555443
No 48
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.13 E-value=0.049 Score=42.25 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=83.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeec---CCceeeeE--EEEeeeecc
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE---GNQVKCSK--NRVDALDLE 78 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~---g~~~~~~k--Erl~~~D~~ 78 (160)
..+..+..|++|++++.+++. |... .++|.|... +.+.++..+..-.+-.+.+.. ...-..+- -.++.++ +
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~-d~~~-~~~W~p~~~-~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~-~ 121 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLN-EVEL-YKTWVPFCI-RSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE-E 121 (215)
T ss_pred EEEEEEEEecCChhHeEEEEe-hhhh-Hhhhcccce-eeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-c
Confidence 467788899999999999996 9876 999999644 444443432212233333321 11111111 1122232 3
Q ss_pred cceEEEEE--EecC----------cCCcC-----ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHH
Q 044920 79 NFSYKYSL--IEGD----------VLMDK-----LEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEK 140 (160)
Q Consensus 79 ~~~~~y~i--~eg~----------~~~~~-----~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~ 140 (160)
+..+.... +..+ +++.. ...+.+-+.++|.++++|.+++.+..+|.+...| .-.+ ...++.
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP-~~liN~~~k~~ 200 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVP-KSLLNFVARKF 200 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCC-HHHHHHHHHHH
Confidence 33332221 2111 22211 3567778889999888999999998888776223 3333 345566
Q ss_pred HHHHHHHHHHHHh
Q 044920 141 SLAMYKVVENYLM 153 (160)
Q Consensus 141 ~~~~~k~~e~~l~ 153 (160)
...+++.|.+-+.
T Consensus 201 ~~~~~~~l~k~~~ 213 (215)
T cd08877 201 AGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHh
Confidence 6778887776543
No 49
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.06 E-value=0.068 Score=42.67 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=79.2
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCC-CCCcEEEEEeecC-Cc---eeeeEEEEeeeeccc
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG-GAGSIRQINVVEG-NQ---VKCSKNRVDALDLEN 79 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~GsvR~~~~~~g-~~---~~~~kErl~~~D~~~ 79 (160)
.+..+..+++|++++++++. |... .++|.+. +.++++++--+ .. .+.+++..+- ++ -..+--+-..-+.++
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~-D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLS-DLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHh-Chhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 45677899999999999996 9999 9999995 88888875532 22 2555554332 11 122222111122222
Q ss_pred c---eE-EEEEEecCcCC-cC---ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHH-HH-HHHHHHHHHHHH
Q 044920 80 F---SY-KYSLIEGDVLM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIK-EG-KEKSLAMYKVVE 149 (160)
Q Consensus 80 ~---~~-~y~i~eg~~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~-~~~~~~~~k~~e 149 (160)
. .+ ..++.-.+.++ .+ ..++.+-+.+.|.+++.|.+++...-+| |. .|.-..+ .. ..-+..-+.+-.
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G~-LP~~~~N~~~~~~p~~~~~~~~~ 234 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--GV-LPYISTDIAGLSSEFYSTFSACS 234 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--cc-ccHHHhhhhhhccchhHHHHHHH
Confidence 2 12 22232222221 11 3455678889998888999988665554 32 3332222 11 112244555555
Q ss_pred HHHhcC
Q 044920 150 NYLMQN 155 (160)
Q Consensus 150 ~~l~~~ 155 (160)
+||.+|
T Consensus 235 ~~~~~~ 240 (240)
T cd08913 235 QFLLDN 240 (240)
T ss_pred HHhhcC
Confidence 565543
No 50
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.95 E-value=0.064 Score=41.65 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=81.2
Q ss_pred EEEEEEecCCHHHHH-HHhhhccCccchhhcccceeEEEEEcCCCCCCc-EEEEEeec-CC---ceeeeEEEEeeeeccc
Q 044920 6 VTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVVE-GN---QVKCSKNRVDALDLEN 79 (160)
Q Consensus 6 ~~~e~~i~apa~~vW-~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gs-vR~~~~~~-g~---~~~~~kErl~~~D~~~ 79 (160)
+..+..+++|+++++ .++ .|... .++|.+. +.++++++--+.-=. ++.+.... ++ +-..+--|....+..+
T Consensus 51 ~k~e~~i~~~~~~l~~~l~-~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELV-DRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEecCCHHHHHHHHH-hchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 567889999999999 666 48888 8999995 777777654321111 23322221 21 1122322322233333
Q ss_pred ceEEEEEEecCcCC--cC---ceeEEEEEEeeecCC--CCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHHHH
Q 044920 80 FSYKYSLIEGDVLM--DK---LEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVENY 151 (160)
Q Consensus 80 ~~~~y~i~eg~~~~--~~---~~~y~~ti~v~p~~~--g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e~~ 151 (160)
..+.....+-+..+ .+ ...+.+-+.+.|.++ ++|.++|.+-.+|.+.. |.-.++ .+.+.....++.|.++
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i--P~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL--PKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC--CHHHHHHHhHHhHHHHHHHHHHH
Confidence 22211112222211 11 334556778889865 78999999999998864 333333 3345556777777776
Q ss_pred Hh
Q 044920 152 LM 153 (160)
Q Consensus 152 l~ 153 (160)
|.
T Consensus 206 ~~ 207 (209)
T cd08905 206 MA 207 (209)
T ss_pred Hh
Confidence 65
No 51
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.65 E-value=0.17 Score=37.53 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=53.3
Q ss_pred EEEEEEecCCH--------HHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeec
Q 044920 6 VTDEYTSPISP--------ARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDL 77 (160)
Q Consensus 6 ~~~e~~i~apa--------~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~ 77 (160)
+++.++||-|. ++||+-+..-..+ =....| .|.+|++++.. +..-.|.++|+ + ..++|++.. .
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg--~--~~v~E~v~~-~- 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFG--G--ATVRERVTL-Y- 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEET--T--EEEEEEEEE-E-
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEEC--C--cEEEEEEEE-e-
Confidence 45666666554 4799998733333 224455 69999999766 34678999993 3 489999875 3
Q ss_pred ccceEEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEc
Q 044920 78 ENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK 124 (160)
Q Consensus 78 ~~~~~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 124 (160)
+.+++.|.... =. +.|+.+...++ ..+-.++.|+-.
T Consensus 73 ~~~~V~f~~~~-------Gs--~lt~~I~e~~~--g~L~ltf~ye~~ 108 (149)
T PF08982_consen 73 PPERVDFAQHD-------GS--SLTNIISEPEP--GDLFLTFTYEWR 108 (149)
T ss_dssp TTTEEEESSSB-------EE--EEEEEEEEEET--TEEEEEEEEEEE
T ss_pred CCcEEEEEcCC-------CC--EEEEEEecCCC--CcEEEEEEEEec
Confidence 34467771111 12 33344433223 366667777764
No 52
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.16 Score=37.16 Aligned_cols=138 Identities=13% Similarity=0.075 Sum_probs=84.4
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCC-CCCCcEEEEEeec-CCc-eeeeEEEEee--eecc
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVE-GNQ-VKCSKNRVDA--LDLE 78 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~-g~~-~~~~kErl~~--~D~~ 78 (160)
+++.....|+||.|.||+... -.++ +..+-|..+ +-.-+|+ -+.|+--.+.+.+ |.+ --.++-|+++ +|+.
T Consensus 2 ~tF~~~~~i~aP~E~VWafhs-rpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHS-RPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhhc-CccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 567777899999999999997 6677 667777543 3323443 2344443333322 222 1356777777 6666
Q ss_pred cceEEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH--HHHHHHHHHHHHHHHHHH
Q 044920 79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI--KEGKEKSLAMYKVVENYL 152 (160)
Q Consensus 79 ~~~~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~--~~~~~~~~~~~k~~e~~l 152 (160)
. +++=..+.|+.+. + +.+-+-++.+. +|+|.++=++.|+...+... +.+ .-.+-....||..-+.-|
T Consensus 78 ~-~FtDv~i~gPfp~--~-~WrHtH~F~~e-gg~TvliD~Vsye~p~g~~~--~~~g~~l~q~~l~~mFr~Rhs~l 146 (153)
T COG4276 78 S-RFTDVCITGPFPA--L-NWRHTHNFVDE-GGGTVLIDSVSYELPAGTLT--GMFGYRLTQLILDLMFRSRHSTL 146 (153)
T ss_pred c-eeeeeeecCCccc--e-eeEEEeeeecC-CCcEEEEeeEEeeccCccee--chhhhhhHHHHHHHHHHHHHHHH
Confidence 5 4555566776553 2 57888999887 45799999999998654211 111 111223466776655444
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.52 E-value=0.26 Score=38.18 Aligned_cols=143 Identities=10% Similarity=-0.006 Sum_probs=77.6
Q ss_pred EEEEEEecCCHHHHHHHhhhccCc-cchhhcccceeEEEEEcCCC-CCCcEEEEEee-c-CC---ceeeeE-EEEeeeec
Q 044920 6 VTDEYTSPISPARLFKALIVDSHN-LIPKLMPQAVKSIEIFEGDG-GAGSIRQINVV-E-GN---QVKCSK-NRVDALDL 77 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~-~~p~~~P~~v~s~~~~eG~g-~~GsvR~~~~~-~-g~---~~~~~k-Erl~~~D~ 77 (160)
+..+..++++++++++++. |..+ .-++|.+. +.++++++.-+ ...-++. ... + ++ +-..+- ......++
T Consensus 48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 6678899999999999996 7654 12799984 77888876532 2222222 222 1 11 112222 22222333
Q ss_pred ccceEEEEEEecCcCC--cCce---e--EEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHH
Q 044920 78 ENFSYKYSLIEGDVLM--DKLE---K--ISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVE 149 (160)
Q Consensus 78 ~~~~~~y~i~eg~~~~--~~~~---~--y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e 149 (160)
....+.+...+-+..+ .+|- . ...-++..|.++++|.++|.+..++++..| ...++ ...+.....++.|.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP--~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLP--QTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcC--HHHHHHHhhHHHHHHHHHHH
Confidence 3333344333332211 1111 1 233444455456689999999999986543 33343 23345556677777
Q ss_pred HHHh
Q 044920 150 NYLM 153 (160)
Q Consensus 150 ~~l~ 153 (160)
++|.
T Consensus 203 ~~~~ 206 (208)
T cd08903 203 KAVK 206 (208)
T ss_pred HHHh
Confidence 6664
No 54
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.48 E-value=0.27 Score=37.85 Aligned_cols=145 Identities=12% Similarity=0.011 Sum_probs=80.1
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEee-cC-Cc---eeeeEEEEeeeecccc
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EG-NQ---VKCSKNRVDALDLENF 80 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g-~~---~~~~kErl~~~D~~~~ 80 (160)
+..+..+++|+++++..+..|.+. .++|.+. +..+++++.-+.--.|-+..+. +. .+ -..+--|-...++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 566889999999998644348887 8999995 6666766553211122222222 21 11 1222222222333332
Q ss_pred eEEEEEEecC-cCC-cC---ceeEEEEEEeeecCC--CCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044920 81 SYKYSLIEGD-VLM-DK---LEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVENYL 152 (160)
Q Consensus 81 ~~~y~i~eg~-~~~-~~---~~~y~~ti~v~p~~~--g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e~~l 152 (160)
.+...-++-+ .++ .+ ...+.+.+.++|.++ ++|.++|.+..+|.+..|. -.. ..+.......++.|..++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~--~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQ--YLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcc--eeeehhhHHHHHHHHHHHHHHH
Confidence 2322223311 111 11 234557778888754 5799999999999875432 222 233456667788888777
Q ss_pred hc
Q 044920 153 MQ 154 (160)
Q Consensus 153 ~~ 154 (160)
.+
T Consensus 206 ~~ 207 (208)
T cd08868 206 AT 207 (208)
T ss_pred hh
Confidence 53
No 55
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.43 E-value=0.31 Score=37.90 Aligned_cols=142 Identities=8% Similarity=-0.018 Sum_probs=78.9
Q ss_pred EEEEEEEecCCHHHHH-HHhhhccCccchhhcccceeEEEEEcCCCCCCc-EEEEEeec-CCc---eeeeEEEEeeeecc
Q 044920 5 TVTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVVE-GNQ---VKCSKNRVDALDLE 78 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW-~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gs-vR~~~~~~-g~~---~~~~kErl~~~D~~ 78 (160)
.+..+..+++|++++| .++. |... .++|.+. +.++++++.-+.-=. ++.++... +++ -..+--|-..-+..
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~-D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVIL-QPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHh-Chhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 4677889999999998 5786 9999 8999995 778887755321111 12222221 122 12333332322333
Q ss_pred cc-eEEEEEEecCcCCcCceeEE-EE-----EEeee--cCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHH
Q 044920 79 NF-SYKYSLIEGDVLMDKLEKIS-YD-----VKFEP--TADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVV 148 (160)
Q Consensus 79 ~~-~~~y~i~eg~~~~~~~~~y~-~t-----i~v~p--~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~ 148 (160)
+. .+..++.-...++ .+.|. +. +-+.| .++++|.++|.+..+|.+..| .-.+ +.+.+.....++.|
T Consensus 127 ~~i~~~~sv~~~~~P~--~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP--~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 127 RYVSAGISTTHSHKPP--LSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLP--RYLIHQSLAATMFEFASHL 202 (209)
T ss_pred cEEEEEEEEecCCCCC--CCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 32 2333332222221 22222 22 33444 456789999999999988542 3333 34445556677777
Q ss_pred HHHHh
Q 044920 149 ENYLM 153 (160)
Q Consensus 149 e~~l~ 153 (160)
.++|.
T Consensus 203 R~~~~ 207 (209)
T cd08906 203 RQRIR 207 (209)
T ss_pred HHHHh
Confidence 66664
No 56
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.35 E-value=0.33 Score=37.50 Aligned_cols=145 Identities=15% Similarity=0.038 Sum_probs=83.8
Q ss_pred EEEEEEEEe-cCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCC-cEEEEEee-c--CCceeeeEEEEeeee-c
Q 044920 4 FTVTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAG-SIRQINVV-E--GNQVKCSKNRVDALD-L 77 (160)
Q Consensus 4 ~~~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~G-svR~~~~~-~--g~~~~~~kErl~~~D-~ 77 (160)
..+..+.++ ++|++.+.+++. |... .++|.+. +.++++++-++..| .|-++.+. + -.+-..+--|-...| +
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 126 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYW-DDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDD 126 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHc-Chhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCC
Confidence 456677788 679999999996 9887 8999995 66667765553212 22333332 1 111123332322233 3
Q ss_pred ccceEEEEEEecCcCCc----CceeEEEEEEeeec--CCCCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHHH
Q 044920 78 ENFSYKYSLIEGDVLMD----KLEKISYDVKFEPT--ADGGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVEN 150 (160)
Q Consensus 78 ~~~~~~y~i~eg~~~~~----~~~~y~~ti~v~p~--~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e~ 150 (160)
....+....+.-+..+. -+..|.+.+.+.|. ++++|.+.++.--+|.+. .|.-.++ .+....-.+++.|.+
T Consensus 127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~ 204 (209)
T cd08870 127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLEN 204 (209)
T ss_pred CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHH
Confidence 33333332222211111 16778899999998 567788888877766443 4444443 444555677777777
Q ss_pred HHh
Q 044920 151 YLM 153 (160)
Q Consensus 151 ~l~ 153 (160)
.++
T Consensus 205 a~~ 207 (209)
T cd08870 205 ALR 207 (209)
T ss_pred HHh
Confidence 664
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.34 E-value=0.35 Score=37.61 Aligned_cols=146 Identities=9% Similarity=-0.027 Sum_probs=80.5
Q ss_pred EEEEEEe-cCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecC---CceeeeEEEEeeeecccce
Q 044920 6 VTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG---NQVKCSKNRVDALDLENFS 81 (160)
Q Consensus 6 ~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g---~~~~~~kErl~~~D~~~~~ 81 (160)
+..+..+ ++|++.+++++. |... .++|.+. +..+++++.-+.--.|.++.+..- .+-..+--|....++....
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~-D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLH-DPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHH-Chhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence 4556666 799999999996 9876 8999996 556666644322123444444321 1112332232222232222
Q ss_pred EEEEEEecC-cCC-cC---ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 044920 82 YKYSLIEGD-VLM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVENYLMQN 155 (160)
Q Consensus 82 ~~y~i~eg~-~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e~~l~~~ 155 (160)
+...-++-+ .++ .+ ...+.+-+.+.|.++++|.++|....++.+.. |.-.++ .+......+++.|.+.+..-
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~I--P~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSL--PKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCc--CHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 211111211 111 11 12355667888988788999999888887753 333433 33344456666666665543
Q ss_pred C
Q 044920 156 P 156 (160)
Q Consensus 156 ~ 156 (160)
+
T Consensus 204 ~ 204 (222)
T cd08871 204 P 204 (222)
T ss_pred H
Confidence 3
No 58
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.02 E-value=0.59 Score=37.29 Aligned_cols=116 Identities=12% Similarity=-0.004 Sum_probs=68.2
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeec--CCc-eeeeEEEEe--eeecc
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GNQ-VKCSKNRVD--ALDLE 78 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~--g~~-~~~~kErl~--~~D~~ 78 (160)
..+..+..+++|++++++++. |... .++|.+. ..++++++.-+.---|..+.-.+ ..+ -..+.-+-. ..++.
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~-D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLS-DFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHh-Chhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 457788899999999999997 9999 9999995 77788875532111266665333 111 122221111 11122
Q ss_pred c-ceEEEEEEec-CcCC-cC---cee-EEEEEEeeecCCCCCeEEEEEEEEE
Q 044920 79 N-FSYKYSLIEG-DVLM-DK---LEK-ISYDVKFEPTADGGSKNTMTSTYYT 123 (160)
Q Consensus 79 ~-~~~~y~i~eg-~~~~-~~---~~~-y~~ti~v~p~~~g~s~v~W~~~y~~ 123 (160)
+ ..+.-.-+.- -+++ .+ ... ..+- .+.|.++++|.|+....-+|
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 2 2222222222 2221 11 233 2333 78898888999999998888
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.07 E-value=1.2 Score=34.43 Aligned_cols=145 Identities=10% Similarity=0.003 Sum_probs=82.4
Q ss_pred EEEEEEEEe-cCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCC-cEEEEEeecC---CceeeeEEEEeeeecc
Q 044920 4 FTVTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAG-SIRQINVVEG---NQVKCSKNRVDALDLE 78 (160)
Q Consensus 4 ~~~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~G-svR~~~~~~g---~~~~~~kErl~~~D~~ 78 (160)
..+..+..+ ++|++.+.+++. |... .++|.+. +.++++++.+...+ -|-.+.+..- ..-..+--|-...|++
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 121 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQL-DLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEE 121 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCC
Confidence 345666666 999999999996 9887 8999985 67788887643222 2334433211 1113444444445655
Q ss_pred cceE--EEEEEec-CcCCc----CceeEEEEEEeeecC---CCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHH
Q 044920 79 NFSY--KYSLIEG-DVLMD----KLEKISYDVKFEPTA---DGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKV 147 (160)
Q Consensus 79 ~~~~--~y~i~eg-~~~~~----~~~~y~~ti~v~p~~---~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~ 147 (160)
+..+ ...-++- ..++. -+.+|.+.+.+.|.+ +++|.+.++.--+|.+ ..|.-.+ ..+....-.+++.
T Consensus 122 ~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG--~IP~~lvN~~~~~~~~~~l~~ 199 (207)
T cd08911 122 NKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV--NIPSYITSWVAMSGMPDFLER 199 (207)
T ss_pred CCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC--ccCHHHHHHHHHhhccHHHHH
Confidence 5432 1111221 11110 166788899999874 4578777654443333 2334343 2445555677777
Q ss_pred HHHHHh
Q 044920 148 VENYLM 153 (160)
Q Consensus 148 ~e~~l~ 153 (160)
|....+
T Consensus 200 l~~a~~ 205 (207)
T cd08911 200 LRNAAL 205 (207)
T ss_pred HHHHHh
Confidence 766554
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.92 E-value=1.2 Score=33.73 Aligned_cols=146 Identities=16% Similarity=0.007 Sum_probs=84.4
Q ss_pred EEEEEEEEecCCHHHHH-HHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecC-Cc---eeeeEEE-Eeeeec
Q 044920 4 FTVTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-NQ---VKCSKNR-VDALDL 77 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW-~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g-~~---~~~~kEr-l~~~D~ 77 (160)
..+..+..++++++++. .++. |... .++|.+. +.++++++-...-..|.++.+..- ++ -..+--| ....++
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~-d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~ 121 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMD-DLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVD 121 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHh-cccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCC
Confidence 35667788999999744 5664 8887 8999995 677777654321135666554321 12 1222222 122223
Q ss_pred ccceEEEEEEecCcCC--cC---ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHHHH
Q 044920 78 ENFSYKYSLIEGDVLM--DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVENY 151 (160)
Q Consensus 78 ~~~~~~y~i~eg~~~~--~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e~~ 151 (160)
....+..+-++.+-.+ .+ ...+.+-+.+.|.+++.|.++|....++.+..| .-.++ .+......+++.+-++
T Consensus 122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP--~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLP--HWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCcc--ceeehhhhhhhHHHHHHHHHHH
Confidence 3333433323322111 11 245778889999988889999999999887542 22332 3344556677777666
Q ss_pred Hhc
Q 044920 152 LMQ 154 (160)
Q Consensus 152 l~~ 154 (160)
|..
T Consensus 200 ~~~ 202 (206)
T smart00234 200 LQK 202 (206)
T ss_pred HHH
Confidence 654
No 61
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.70 E-value=1.5 Score=33.65 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=70.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeec---CCceeeeEEEEeeeeccc--
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE---GNQVKCSKNRVDALDLEN-- 79 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~---g~~~~~~kErl~~~D~~~-- 79 (160)
.+..+.+|++++++|+..+. |. -++|.+. +.++++++--+.-=.|-+..+.. ..+-..+--|....+.++
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~-d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRIL-RE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHH-HH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 35778899999999999886 64 3799995 66777765532111223333221 112234433333333333
Q ss_pred ceEEEEEEec--CcCCcC--ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCcc
Q 044920 80 FSYKYSLIEG--DVLMDK--LEKISYDVKFEPTADGGSKNTMTSTYYTKGNFV 128 (160)
Q Consensus 80 ~~~~y~i~eg--~~~~~~--~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~ 128 (160)
..+..+-++- ..++.. ...+.+-+.++|.++++|.+++.+..+|.+..|
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP 172 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSP 172 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCC
Confidence 2333332321 122111 245567788999888899999999999987654
No 62
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=94.33 E-value=1.5 Score=32.36 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=60.8
Q ss_pred EEEEEecCCHHHHHHHhhhccCccchhh---ccc---ceeEEEEEcCCCCCCcEEEE-Eeec-CCc---------eeee-
Q 044920 7 TDEYTSPISPARLFKALIVDSHNLIPKL---MPQ---AVKSIEIFEGDGGAGSIRQI-NVVE-GNQ---------VKCS- 68 (160)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~---~P~---~v~s~~~~eG~g~~GsvR~~-~~~~-g~~---------~~~~- 68 (160)
+.++++++|+|+||+++. |-.= +..- +.. .+.+++ .+|+| -+++.- .+.. ..| .-.+
T Consensus 2 ~~~~~~~~~~~~v~~~~~-d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFT-DEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred eEEEEcCCCHHHHHHHHc-CHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 567899999999999997 5331 2222 221 133333 22332 111111 1111 111 0122
Q ss_pred -EEEEeeeecccceEEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEc
Q 044920 69 -KNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK 124 (160)
Q Consensus 69 -kErl~~~D~~~~~~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 124 (160)
.|+....++..++-+|++--.+.+ . +.++++++.|. +++|.++++.+....
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~P---~-~~~G~~~L~~~-~~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGAP---V-SISGTMRLRPD-GGGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCce---E-EEEEEEEEecC-CCCEEEEEEEEEEEE
Confidence 223323366777777776433332 2 58999999995 457999999999985
No 63
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.80 E-value=2.3 Score=32.54 Aligned_cols=142 Identities=9% Similarity=-0.025 Sum_probs=77.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhc--cCccchhhcccceeEEEEEcCCCCCCcEEEEEeec-C-C---ceeee-EEEEeeee
Q 044920 5 TVTDEYTSPISPARLFKALIVD--SHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE-G-N---QVKCS-KNRVDALD 76 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d--~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~-g-~---~~~~~-kErl~~~D 76 (160)
.+..+..|+++++++.+.+. | ... .++|.+. +.++++++.-+..=.|-+..+.. + + +-.++ .+.....+
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~-d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~ 123 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVII-PPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYE 123 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeC
Confidence 36778899999999999996 7 555 6899985 77888886643111222222211 1 1 11222 12112233
Q ss_pred cccceEEEEEEecCcCCcCcee------EEEEEEeeecC--CCCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHH
Q 044920 77 LENFSYKYSLIEGDVLMDKLEK------ISYDVKFEPTA--DGGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKV 147 (160)
Q Consensus 77 ~~~~~~~y~i~eg~~~~~~~~~------y~~ti~v~p~~--~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ 147 (160)
+....+...-++-+..+ +.+. +.+-+-+.|.+ +++|.++|.+..++.+..| .-.++ .+.+.....++.
T Consensus 124 ~~~~~i~~~Sv~hp~~p-~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP--~~lvn~~~~~~~~~~~~~ 200 (206)
T cd08867 124 DNQWSSSGKSVDIPERP-PTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIP--QSLVESAMPSNLVNFYTD 200 (206)
T ss_pred CCeEEEEEEeccCCCCC-CCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCc--HHHHHhhhhhhHHHHHHH
Confidence 32222332333222211 1222 22334456654 3579999999999987543 33332 344455677777
Q ss_pred HHHHH
Q 044920 148 VENYL 152 (160)
Q Consensus 148 ~e~~l 152 (160)
|.+||
T Consensus 201 lr~~~ 205 (206)
T cd08867 201 LVKGV 205 (206)
T ss_pred HHHhc
Confidence 77665
No 64
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=93.21 E-value=3.5 Score=32.68 Aligned_cols=144 Identities=8% Similarity=0.030 Sum_probs=81.5
Q ss_pred EEEEEEEec-CCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeec---CCceee-eEEEEeeeeccc
Q 044920 5 TVTDEYTSP-ISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE---GNQVKC-SKNRVDALDLEN 79 (160)
Q Consensus 5 ~~~~e~~i~-apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~---g~~~~~-~kErl~~~D~~~ 79 (160)
.+..+..++ +|++.+.+++. |... -++|... +.+.++++-.+.--.|-+..+.. -.+-.. +.-++...++..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~-D~~~-r~~Wd~~-~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~ 129 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFF-DPDV-RMDWETT-LENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALE 129 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHh-Chhh-HHHHHhh-hheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccc
Confidence 366777888 99999999997 9887 8999984 77878765532111222332221 111112 222223333321
Q ss_pred --------ceEEEEEEecCcCCcCceeEEEEE-----------------EeeecCCCCCeEEEEEEEEEcCCccCCHHHH
Q 044920 80 --------FSYKYSLIEGDVLMDKLEKISYDV-----------------KFEPTADGGSKNTMTSTYYTKGNFVLTEEEI 134 (160)
Q Consensus 80 --------~~~~y~i~eg~~~~~~~~~y~~ti-----------------~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~ 134 (160)
-.+..++.-...++. -...++.. .++| ++++|.+++.+..+|.+..| .-.+
T Consensus 130 ~~~~~~~~vii~~Sv~h~~~P~~-~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP--~wvv 205 (235)
T cd08872 130 EPNAHDTWIVCNFSVDHDSAPLN-NKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWAP--ASVL 205 (235)
T ss_pred cccCCCeEEEEEecccCccCCCC-CCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCcc--HHHH
Confidence 223333322222221 12223332 2334 35689999988888876543 3333
Q ss_pred -HHHHHHHHHHHHHHHHHHhcC
Q 044920 135 -KEGKEKSLAMYKVVENYLMQN 155 (160)
Q Consensus 135 -~~~~~~~~~~~k~~e~~l~~~ 155 (160)
..++..+-++++.+.+|+..+
T Consensus 206 n~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 206 RAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHhhchHHHHHHHHHHHHh
Confidence 466777789999999999864
No 65
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=89.88 E-value=7.6 Score=29.97 Aligned_cols=142 Identities=14% Similarity=0.004 Sum_probs=78.6
Q ss_pred EEEEEEEEec-CCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecC---Cceeee-EEEEeeeecc
Q 044920 4 FTVTDEYTSP-ISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG---NQVKCS-KNRVDALDLE 78 (160)
Q Consensus 4 ~~~~~e~~i~-apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g---~~~~~~-kErl~~~D~~ 78 (160)
..+..+..++ ++++.+.+++. |... -++|.+... ++.-.+.++ -.|-++.+..- ..-..+ .-+...+|..
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~~~-~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~ 123 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYM-DLEY-RKQWDQYVK-ELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVE 123 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHHHHH-hheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCC
Confidence 3466677887 79999999996 9887 899999644 332122222 12344444211 111222 2122334444
Q ss_pred cceEEE---EEEecCc-CC-c---CceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHH-HHHHHHHHHHHHHHH
Q 044920 79 NFSYKY---SLIEGDV-LM-D---KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEI-KEGKEKSLAMYKVVE 149 (160)
Q Consensus 79 ~~~~~y---~i~eg~~-~~-~---~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~~e 149 (160)
+..+.. ...+-+- ++ . -...|.+.+.++|.++++|.+++....+|.+.. |.-.+ ..+......+++.|.
T Consensus 124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~I--P~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGMI--PSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCcc--hHHHHHHHHHHhhHHHHHHHH
Confidence 432211 1111111 10 0 156788999999987778988888777765543 33333 344555567777776
Q ss_pred HHH
Q 044920 150 NYL 152 (160)
Q Consensus 150 ~~l 152 (160)
...
T Consensus 202 ka~ 204 (207)
T cd08910 202 KAC 204 (207)
T ss_pred HHH
Confidence 654
No 66
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=87.83 E-value=11 Score=29.27 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=67.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCC-CCCcEEEEEee---cCCceeeeEEEEeeeeccc
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG-GAGSIRQINVV---EGNQVKCSKNRVDALDLEN 79 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g-~~GsvR~~~~~---~g~~~~~~kErl~~~D~~~ 79 (160)
..+..+++|+++++++...+- |- -++|.+. +.+.++++.-+ .. -|-...+. +-..-..+.-|.-..|..+
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~~~-~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~ 125 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDSQT-EIYQYVQNSMAPHPARDYVVLRTWRTNLPK 125 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCCCc-eEEEEEccCCCCCCCcEEEEEEEEEEeCCC
Confidence 457788999999999999996 65 3799986 44555554432 11 11222211 1111233443333333333
Q ss_pred ceEEEEEE--ecCcCC-c--CceeEEEEEEeeecCCCCCeEEEEEEEEEcCCcc
Q 044920 80 FSYKYSLI--EGDVLM-D--KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFV 128 (160)
Q Consensus 80 ~~~~y~i~--eg~~~~-~--~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~ 128 (160)
..+..... +-+..+ . -...+.+.+-++|.++|+|.++..+..+|.+..|
T Consensus 126 g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~iP 179 (204)
T cd08908 126 GACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHMP 179 (204)
T ss_pred CeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCCc
Confidence 33322221 111111 1 1334567788899988999999999999987653
No 67
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=84.48 E-value=15 Score=27.53 Aligned_cols=146 Identities=16% Similarity=0.073 Sum_probs=88.4
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCC--ce---eeeEEEEee-eec
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN--QV---KCSKNRVDA-LDL 77 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~--~~---~~~kErl~~-~D~ 77 (160)
..+..+..++++++++...+. +-.. .|-+. +.++++++--..-..|.++.+.... +. ..+--|... ..+
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED 120 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT
T ss_pred eEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc
Confidence 456778899999998888886 4332 88884 7788877653222466666655322 31 222222222 244
Q ss_pred ccceEEEEEEecCcCCc---C---ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHHH
Q 044920 78 ENFSYKYSLIEGDVLMD---K---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVEN 150 (160)
Q Consensus 78 ~~~~~~y~i~eg~~~~~---~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e~ 150 (160)
....+..+-++.+..+. + ...+.+.+.+.|.+++.|.|++...-++.+..| .-.++ ........+++.+-+
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP--~~~~n~~~~~~~~~~~~~~~~ 198 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIP--SWLVNMVVKSQPPNFLKNLRK 198 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCCh--HHHHHHHHHHhHHHHHHHHHH
Confidence 44455554444333221 1 235567788999988889999998888877543 34444 334445677788877
Q ss_pred HHhcCC
Q 044920 151 YLMQNP 156 (160)
Q Consensus 151 ~l~~~~ 156 (160)
+|..++
T Consensus 199 ~~~~~~ 204 (206)
T PF01852_consen 199 ALKKQK 204 (206)
T ss_dssp HHHHCC
T ss_pred HHHHhc
Confidence 777765
No 68
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=84.15 E-value=6.9 Score=30.74 Aligned_cols=106 Identities=9% Similarity=0.111 Sum_probs=66.2
Q ss_pred EEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEee-cCCceeeeEEEEeeeecccceEEEEEEe
Q 044920 10 YTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYKYSLIE 88 (160)
Q Consensus 10 ~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~i~e 88 (160)
..|..+++.+|++++ |... .....| .-++.+++..+.+-+.+-.+..+ ++. .+...-+++ .++..++.+ ..-+
T Consensus 74 rligysp~~my~vVS-~V~~-Y~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l-~E~y~S~Vt-~~~p~l~kt-~~~d 147 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVS-NVSE-YHEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPL-DERYTSNVT-CVKPHLTKT-VCAD 147 (227)
T ss_pred hhhCCCHHHHHHHHH-hHHH-hhcccc-ceeccceeecCCCCCceeeEEecCccc-chhheeeeE-EecccceEE-eecc
Confidence 357899999999997 7666 566666 45565666444122344444432 111 123333433 555554443 2346
Q ss_pred cCcCCcCceeEEEEEEeeecC--CCCCeEEEEEEEEEcC
Q 044920 89 GDVLMDKLEKISYDVKFEPTA--DGGSKNTMTSTYYTKG 125 (160)
Q Consensus 89 g~~~~~~~~~y~~ti~v~p~~--~g~s~v~W~~~y~~~~ 125 (160)
|.+ +......+++.|.. .+.|.+...++|+-+.
T Consensus 148 ~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 148 GRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred ccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 654 55677889999998 5799999999999753
No 69
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=60.35 E-value=16 Score=29.63 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=27.7
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+++.+.+..+.+...+..++..+....+.+.+|+.+..+|+.|
T Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 238 YFKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred eEEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 35566655332211112222345677899999999999999976
No 70
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=60.19 E-value=13 Score=27.23 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=30.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCC
Q 044920 5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD 48 (160)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~ 48 (160)
.++.++..+-+.+.+-.+++ |..-++|+++| .++++. .+++
T Consensus 2 ~~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p-~ik~v~-~~~~ 42 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILS-DPEFVLPRLFP-PIKSVK-VEEN 42 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT--HHHHHHHHST-TEEEEE--STT
T ss_pred eEEEEeccCCChHheEEEec-CCccEecccCC-ceEEEE-ecCC
Confidence 35677888999999999997 99888999999 488888 4343
No 71
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=60.09 E-value=81 Score=24.61 Aligned_cols=141 Identities=10% Similarity=-0.028 Sum_probs=73.7
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcE-EEEEeecCCc----eeeeE-EEEeeeeccc
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSI-RQINVVEGNQ----VKCSK-NRVDALDLEN 79 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~Gsv-R~~~~~~g~~----~~~~k-Erl~~~D~~~ 79 (160)
+..|..|+..++++|..+. +... ..+|-| .+++++++|.=+.-=+| |+.+....++ -.++- -+.....+.-
T Consensus 49 ~R~Egvv~~~~~ev~d~v~-~~~~-r~~Wd~-~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~ 125 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIR-PGPY-RLDWDS-LMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL 125 (202)
T ss_pred EEEEEEecCCHHHHHHHHh-cccc-hhcccc-hhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe
Confidence 4567788999999999996 7554 679998 49999998763211133 4555443321 11111 1111122222
Q ss_pred ceEEEEEEecCcCCcCc---eeEEEEEEeeecCCC--CCeEEEEEEEEEcCCccCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044920 80 FSYKYSLIEGDVLMDKL---EKISYDVKFEPTADG--GSKNTMTSTYYTKGNFVLTEEEIK-EGKEKSLAMYKVVENYL 152 (160)
Q Consensus 80 ~~~~y~i~eg~~~~~~~---~~y~~ti~v~p~~~g--~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~~e~~l 152 (160)
.+..-++.-...++ +| .++-+-+-+.|.+++ .|.++|-+..+.++.. |...++ .+-.....++..|..+|
T Consensus 126 ~s~gvs~~~~~~pp-g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~L--PqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 126 LSCGVSIEYEEARP-NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGML--PQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEEeeecCCCCCC-CeEeecccccEEEEEECCCCCCceEEEEEEEecCCCCc--cHHHHHHHhhHHHHHHHHHHHHhc
Confidence 22333332222221 11 112233456676655 7899999998888653 333332 22222344444444443
No 72
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=55.90 E-value=18 Score=29.57 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=27.9
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+.+.+++.-+.+..++.-++..+....+.+.+|+.+..+|+.|
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 46677765432211111111234678899999999999999976
No 73
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=52.44 E-value=24 Score=28.71 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=26.5
Q ss_pred EEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 117 MTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 117 W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
|.+++.+..+.+++ + +..+....+.+.+|+++..+|+.|
T Consensus 249 ~~i~~~~~~~~~~~-~---~~~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 249 FELTVRPAMATELS-V---DPEQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred EEEEEecCCCCCCC-C---CHHHHHHHHHHHHHHHHHcCchHH
Confidence 66666653322222 2 224578899999999999999865
No 74
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=50.09 E-value=28 Score=28.11 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=26.7
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+++.+++.....++.+ ..+....+.+.+|++++.+|+.|
T Consensus 238 ~y~i~~~~~~~~~~~~~----~~~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDMYSTD----VEVSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCCCCCC----HHHHHHHHHHHHHHHHHcCcHHh
Confidence 46666665422212222 23577899999999999999876
No 75
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=49.69 E-value=1.2e+02 Score=23.45 Aligned_cols=118 Identities=13% Similarity=-0.023 Sum_probs=66.6
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeec--CC---ceeeeEEEEe-eeeccc
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GN---QVKCSKNRVD-ALDLEN 79 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~--g~---~~~~~kErl~-~~D~~~ 79 (160)
+..+..|+++++++|+.+. |... ..+|-+ .+..++++|-=+.-=.|-+..+.+ ++ +..++-=|.. .+++..
T Consensus 48 ~k~egvi~~~~e~v~~~l~-~~e~-r~~Wd~-~~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~ 124 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMY-QPEH-RIKWDK-SLQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNM 124 (204)
T ss_pred EEEEEEecCCHHHHHHHHh-ccch-hhhhcc-cccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCE
Confidence 5678899999999999997 7665 789999 577877775421101233322221 11 1122222221 124433
Q ss_pred ceEEEEEEecCcCCcCce------eEEEEEEeeecCCC--CCeEEEEEEEEEcCCc
Q 044920 80 FSYKYSLIEGDVLMDKLE------KISYDVKFEPTADG--GSKNTMTSTYYTKGNF 127 (160)
Q Consensus 80 ~~~~y~i~eg~~~~~~~~------~y~~ti~v~p~~~g--~s~v~W~~~y~~~~~~ 127 (160)
..+....++=+-.+ +-+ ++.+-+-+.|.+++ +|.++|-+..++++..
T Consensus 125 ~ii~~~sv~Hp~~P-p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~l 179 (204)
T cd08904 125 NIVSSVSVEYPQCP-PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNL 179 (204)
T ss_pred EEEEEEecccCCCC-CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCC
Confidence 33333333332211 122 23345566787654 7999999998888654
No 76
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=45.76 E-value=71 Score=21.41 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=34.8
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~ 156 (160)
.|+|++-+ +..-.+.|-++... +.+.|--.+.+.......+|.+.+. ......+.++-..||..||
T Consensus 14 G~~IL~rN-----~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 14 GYRILERN-----WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp T-EEEEEE-----EEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CCEEeeee-----ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 46777654 55556888888874 5566666555554433223333221 2345678888899999988
No 77
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=45.14 E-value=42 Score=27.10 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCc
Q 044920 137 GKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 137 ~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
..+....+.+.+|+++.++|+.|
T Consensus 259 ~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 259 ILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 45678999999999999999866
No 78
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=44.95 E-value=36 Score=27.71 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=26.7
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+.+.+++....++. + +..+....+.+.+|+++..+|+.|
T Consensus 251 ~~~i~~~~~~~~~~~-~---d~~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPPL-D---DAEATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCCC-C---CHHHHHHHHHHHHHHHHHcCchHH
Confidence 466666654332222 1 223577888899999999999866
No 79
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=43.53 E-value=39 Score=27.48 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=27.0
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
+|.+.+++.....+ .+. ..+....+.+.+|+++.++|+.|
T Consensus 248 ~y~i~i~~~~~~~~-~~~---i~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADFP-SDD---VIADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCCC-CCC---HHHHHHHHHHHHHHHHHcCcHhh
Confidence 46666665322212 222 34578999999999999999866
No 80
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=42.89 E-value=40 Score=27.45 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhcCCcCc
Q 044920 138 KEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 138 ~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+....+.+.+|+++..+|+.|
T Consensus 257 ~~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 257 LRAATALNAGIERIARRDPAQY 278 (305)
T ss_pred HHHHHHHHHHHHHHHHcCcHHh
Confidence 3577899999999999999876
No 81
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=41.77 E-value=44 Score=27.34 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=27.0
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
+|.+.+++..+..+..+ ..+....+.+.+|+++..+|+.|
T Consensus 257 ~~~i~~~~~~~~~~~~d----~~~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDLLSAD----DETIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCCCCCC----HHHHHHHHHHHHHHHHHcCcHHH
Confidence 46666765432222222 23577899999999999999866
No 82
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=41.76 E-value=40 Score=27.12 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+.+.+.+.....+. +. ..+..+.+.+.+|+++..+|+.|
T Consensus 232 ~~~i~i~~~~~~~~~-~~---~~~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 232 TVTLHFYPAWDSFPS-ED---AQADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred cEEEEEecCCCCCCC-CC---HHHHHHHHHHHHHHHHHcCcHHH
Confidence 366666543222122 22 24678999999999999999865
No 83
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=39.67 E-value=49 Score=26.79 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=26.4
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+.+.+++..+..+ .+. ..+....+.+.+|+++.++|+.|
T Consensus 245 ~~~i~~~~~~~~~~-~~~---~~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 245 GYRLKIDPPLDDFP-GDD---EIAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred eEEEEEeCCCCCCC-CCC---HHHHHHHHHHHHHHHHHcCcHHH
Confidence 36666665322212 222 24578899999999999999866
No 84
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=36.92 E-value=54 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=25.7
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+.+.+++.-...+. +.. .+....+.+.+|+++.++|+.|
T Consensus 249 ~~~i~~~~~~~~~~~-~~~---~~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 249 GYRLVIHPPLEDFPG-ESE---EADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred eEEEEEeCCCcCCCC-CCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 466666653222222 222 2356899999999999999865
No 85
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=36.55 E-value=64 Score=23.67 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcCc
Q 044920 138 KEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 138 ~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+....+.+.+|+.+.++|+.|
T Consensus 163 ~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 163 EEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHhCchhh
Confidence 4688999999999999999865
No 86
>PRK14681 hypothetical protein; Provisional
Probab=35.65 E-value=1.4e+02 Score=22.26 Aligned_cols=69 Identities=6% Similarity=0.042 Sum_probs=45.1
Q ss_pred EEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044920 82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157 (160)
Q Consensus 82 ~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 157 (160)
-.|+|++-+ |..-.+.|.++...+++++|-..+.+........|.+-+. ...-..+.++-+.||..|+.
T Consensus 60 ~Gy~IL~rN-----~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt--~~Kqrrl~raA~~yL~~~~~ 128 (158)
T PRK14681 60 HGWTTLSRN-----WHCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVT--AAKQHNLRKAACDWLLERRN 128 (158)
T ss_pred CCCEEEEEE-----EeCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 357887755 4444688888887544688888888776544333333221 23556788888999988763
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=35.59 E-value=1.4e+02 Score=27.74 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=39.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccCccch--hhcccceeEEEEEcCC-----CCCCcEEEEEeecCCceeeeEEEEeeeecc
Q 044920 6 VTDEYTSPISPARLFKALIVDSHNLIP--KLMPQAVKSIEIFEGD-----GGAGSIRQINVVEGNQVKCSKNRVDALDLE 78 (160)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p--~~~P~~v~s~~~~eG~-----g~~GsvR~~~~~~g~~~~~~kErl~~~D~~ 78 (160)
+-...-+..+|||.-+++. + +.++. +-|-..|....++.+. +.-|+||.|.+. |. .+.|. .-+.
T Consensus 149 l~e~~~vTgsaDKtIklWk-~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge---~l~~~---~ght 219 (745)
T KOG0301|consen 149 LPENTYVTGSADKTIKLWK-G-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GE---VLLEM---HGHT 219 (745)
T ss_pred cCCCcEEeccCcceeeecc-C-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-Cc---eeeee---eccc
Confidence 3333456777887666664 3 22121 2233446665555442 234899999984 42 34333 4467
Q ss_pred cceEEEE
Q 044920 79 NFSYKYS 85 (160)
Q Consensus 79 ~~~~~y~ 85 (160)
++.|+++
T Consensus 220 n~vYsis 226 (745)
T KOG0301|consen 220 NFVYSIS 226 (745)
T ss_pred eEEEEEE
Confidence 7777776
No 88
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=35.40 E-value=76 Score=25.38 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=28.5
Q ss_pred EEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 115 NTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 115 v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
..|.+.+++.-+.+..+ +..+....+.+.+|+.+.++|+.|
T Consensus 246 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE----DIEELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc----hHHHHHHHHHHHHHHHHHcChHhh
Confidence 56777777643322222 224678999999999999999865
No 89
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=34.55 E-value=1.2e+02 Score=20.37 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=38.4
Q ss_pred chhhcccceeEEEEEcCCCCCCcEEEEEeecCCc---eeeeEEEEeeeecccceEEEEE-EecCcCCcCceeEEEEEEee
Q 044920 31 IPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALDLENFSYKYSL-IEGDVLMDKLEKISYDVKFE 106 (160)
Q Consensus 31 ~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~~~~y~i-~eg~~~~~~~~~y~~ti~v~ 106 (160)
.|+|-+...+.+.+.||++ .+-.+.-..|.+ ..|+++....++. +.++ ++ .+|++ |-+.++..
T Consensus 2 ~~~~~~~~~~~v~V~eG~~---~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri--~~~~~GnL-------~fs~v~~~ 68 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDS---VVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERV--SMGQNGNL-------YFANVEEQ 68 (95)
T ss_pred CCcCCccccceeEEecCCC---EEEEecCCCCCCCCEEEEECCCCccccc-cccE--EECCCceE-------EEEEEehh
Confidence 3555555567788888873 344444344543 4677766554443 3333 33 23443 44555555
Q ss_pred ecCCC-CCeEEEE
Q 044920 107 PTADG-GSKNTMT 118 (160)
Q Consensus 107 p~~~g-~s~v~W~ 118 (160)
..+.. .|.++..
T Consensus 69 D~g~~Y~C~a~~~ 81 (95)
T cd05845 69 DSHPDYICHAHFP 81 (95)
T ss_pred hCCCCeEEEEEcc
Confidence 44322 4555544
No 90
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.51 E-value=1.6e+02 Score=24.78 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=12.5
Q ss_pred eecCCCCCeEEEEEEEE
Q 044920 106 EPTADGGSKNTMTSTYY 122 (160)
Q Consensus 106 ~p~~~g~s~v~W~~~y~ 122 (160)
...|++||+=-|.+.|.
T Consensus 304 sStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYN 320 (361)
T ss_pred eecCCCceeeehhhhhh
Confidence 34567789999987765
No 91
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.25 E-value=60 Score=26.25 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=26.5
Q ss_pred EEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 117 MTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 117 W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
+.+++.+.-.. ++.+ +..+....+.+.+|+++.++|+.|
T Consensus 236 y~v~~~~~~~~-~~~~---~~~~~t~~~~~~lE~~Ir~~PeQW 274 (298)
T PRK07920 236 WGFRVHPPLDV-PSAE---DVAAMTQALADAFAANIAAHPEDW 274 (298)
T ss_pred EEEEEeCCCCC-Cchh---HHHHHHHHHHHHHHHHHHhChHHH
Confidence 66666543222 1122 335688999999999999999865
No 92
>PRK14680 hypothetical protein; Provisional
Probab=32.41 E-value=1.5e+02 Score=21.47 Aligned_cols=67 Identities=6% Similarity=0.105 Sum_probs=43.5
Q ss_pred EEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044920 82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156 (160)
Q Consensus 82 ~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~ 156 (160)
-.|+|++-+ |..-.+.|-++.. ++.++|-..+.+........|.+.+. ...-..+.++-+.||..|+
T Consensus 23 ~Gy~Il~rN-----~r~~~GEIDiIa~-~~~~lVFVEVKtR~~~~~g~p~eaV~--~~K~~ri~raA~~yL~~~~ 89 (134)
T PRK14680 23 TGHRILARN-----WRHGGLELDIVCE-DGDTIVFVEVKTRAAHGLTSPTDALT--HSKRHRLIRAARAWLAAHD 89 (134)
T ss_pred CCCEEEEee-----cCCCCCeEEEEEE-eCCEEEEEEEEecCCCCCCChHHhCC--HHHHHHHHHHHHHHHHhCC
Confidence 357887765 3344578888887 45688877777765443333333221 2355678888899998887
No 93
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=31.86 E-value=71 Score=24.53 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=39.7
Q ss_pred ecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEEEEEecCc
Q 044920 12 SPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDV 91 (160)
Q Consensus 12 i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~ 91 (160)
++.+..|+|. |.++ -+..-|..| .+.+.. +|.. ....+++..+..-...=+-|-.+|.....|.|++-|-++
T Consensus 3 ~~i~v~K~W~----d~~n-~~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWD----DYDD-KFKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEEC----CCCC-CCCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 3445556665 2222 234456434 356553 3221 345555554432122234566777788899999999776
Q ss_pred C
Q 044920 92 L 92 (160)
Q Consensus 92 ~ 92 (160)
+
T Consensus 75 ~ 75 (187)
T cd00222 75 P 75 (187)
T ss_pred C
Confidence 5
No 94
>PRK14688 hypothetical protein; Provisional
Probab=30.78 E-value=1.4e+02 Score=21.15 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=42.2
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~ 156 (160)
.|+|++-+ |..-.+.|.++.. +|.++|-..+.+........|.+.+ .......+.++-+.||..|+
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~-~~~~lVFVEVK~R~~~~~g~~~eaV--~~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 24 GYSIIQTN-----CRLPEGEIDIVGQ-DGEYLVFIEVRTKRRLGYGLPAESV--TPRKKAHLMASAESYIQKHR 89 (121)
T ss_pred CCEEEEEE-----eeCCCCcEeEEEe-eCCEEEEEEEEecCCCCCCChHHcC--CHHHHHHHHHHHHHHHHhCC
Confidence 57777755 4444678888887 4567877777765543322333322 12355678888899998887
No 95
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=30.41 E-value=51 Score=21.98 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCCcCc
Q 044920 141 SLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 141 ~~~~~k~~e~~l~~~~~~~ 159 (160)
...++..|++.+.++|+.|
T Consensus 44 ~~~Vl~el~~c~~~~p~~Y 62 (84)
T cd00307 44 EAQVLAALEACLAEHPGEY 62 (84)
T ss_pred HHHHHHHHHHHHHHCCCCe
Confidence 3467789999999999988
No 96
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.06 E-value=88 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhcCCcCc
Q 044920 139 EKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 139 ~~~~~~~k~~e~~l~~~~~~~ 159 (160)
+....+.+.+|+++.++|+.|
T Consensus 255 ~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 255 LDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHcCcHhH
Confidence 468899999999999999876
No 97
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=29.10 E-value=49 Score=22.75 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcCCcCc
Q 044920 142 LAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 142 ~~~~k~~e~~l~~~~~~~ 159 (160)
..++..||+.+.++|++|
T Consensus 59 ~~Vl~el~~c~~~~p~~y 76 (99)
T PF00101_consen 59 AQVLAELEACLAEHPGEY 76 (99)
T ss_dssp HHHHHHHHHHHHHSTTSE
T ss_pred HHHHHHHHHHHHhCCCce
Confidence 356789999999999988
No 98
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=28.27 E-value=85 Score=26.00 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=26.3
Q ss_pred EEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Q 044920 116 TMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.|++..+|.-...+.++. ...+..|.+.+|+.+.++|+-|
T Consensus 250 ~y~l~i~p~~~~~~~~D~----~~~a~~mn~~~E~~I~~~PeQy 289 (308)
T COG1560 250 GYTLHIHPPMTDDPSEDV----EADAQRMNDFVEKWIRAHPEQY 289 (308)
T ss_pred eEEEEEeccccCCCCCCH----HHHHHHHHHHHHHHHHcChHHH
Confidence 356666662222222222 2478999999999999999876
No 99
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=28.20 E-value=1.3e+02 Score=17.97 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 044920 134 IKEGKEKSLAMYKVVENYLMQNP 156 (160)
Q Consensus 134 ~~~~~~~~~~~~k~~e~~l~~~~ 156 (160)
++...+.+...++.+|++|..++
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 34567788999999999999887
No 100
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=28.14 E-value=57 Score=22.46 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCcCc
Q 044920 142 LAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 142 ~~~~k~~e~~l~~~~~~~ 159 (160)
.+++..||+.+.++|+.|
T Consensus 60 ~~Vl~ei~~C~~~~p~~Y 77 (99)
T cd03527 60 AQVLREIEACRKAYPDHY 77 (99)
T ss_pred HHHHHHHHHHHHHCCCCe
Confidence 467889999999999987
No 101
>PRK14684 hypothetical protein; Provisional
Probab=28.07 E-value=1.7e+02 Score=20.68 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=42.7
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 157 (160)
.|+|++-+ +..-.+.|.++.. +|.++|-..+.+........|.+.+. ...-..+.++-+.||..|+.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~-~~~~lvFVEVK~R~~~~~g~~~eaV~--~~K~~rl~r~A~~yL~~~~~ 90 (120)
T PRK14684 24 GLSFITKN-----FRYKQGEIDLIMS-DQSMLVFIEVRYRRFSDFIHPVATVT--PLKQRRLIKTALHYLQKHRL 90 (120)
T ss_pred CCEEEEEE-----ecCCCCeEEEEEE-eCCEEEEEEEeEcCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 47777654 4444688888887 45688887777766433222323221 23456788888999988873
No 102
>PRK12497 hypothetical protein; Reviewed
Probab=26.95 E-value=1.9e+02 Score=20.15 Aligned_cols=67 Identities=9% Similarity=0.140 Sum_probs=41.5
Q ss_pred EEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044920 83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 157 (160)
.|+|++-+ |..-.+.|-++... ++++|-..+.+-.......|.+.+. ......+.++-+.||..+|.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lvFVEVK~R~~~~~g~~~eav~--~~K~~ri~~aA~~yL~~~~~ 90 (119)
T PRK12497 24 GLRILARN-----FRCRFGEIDLIARD-GDTLVFVEVKTRRSDRFGGAAEAVT--PRKQRRLRRAAQLWLARHPS 90 (119)
T ss_pred CCEEEcce-----ecCCCCcEeeeEEe-CCEEEEEEEEeccCCCCCCHHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 57777655 33335778888764 5677777777765433222323221 23456788888999999864
No 103
>PRK14682 hypothetical protein; Provisional
Probab=25.70 E-value=2.1e+02 Score=20.09 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=41.9
Q ss_pred EEEEEecCcCCcCcee-EEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044920 83 KYSLIEGDVLMDKLEK-ISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157 (160)
Q Consensus 83 ~y~i~eg~~~~~~~~~-y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 157 (160)
.|++++-+ |.. -.+.|-++.. +|.++|-..+.+........|.+.+. ...-..+.++-+.||..+|.
T Consensus 22 Gy~Il~rN-----~r~~~~GEIDiIa~-~~~~lvFVEVKtR~~~~~g~~~eaV~--~~K~~ri~~aA~~yL~~~~~ 89 (117)
T PRK14682 22 ALEILAHN-----FKALPYGEIDIIAL-DKDTLVFIEVKYRSKTKFAQAEEMLT--YSKQQKLVNSASIYLQHNPQ 89 (117)
T ss_pred CCEEeeee-----EECCCCCcEEEEEe-eCCEEEEEEEEecCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 47777654 442 4578888887 45677777777665433323333221 23456788888999988874
No 104
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=23.73 E-value=68 Score=18.73 Aligned_cols=12 Identities=50% Similarity=0.800 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCc
Q 044920 146 KVVENYLMQNPE 157 (160)
Q Consensus 146 k~~e~~l~~~~~ 157 (160)
+.|+.+|..||.
T Consensus 26 ~~l~~WL~~~p~ 37 (45)
T smart00592 26 KDLERWLEENPE 37 (45)
T ss_pred HHHHHHHhcCCC
Confidence 457789999984
No 105
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=23.67 E-value=77 Score=21.39 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=20.5
Q ss_pred CCcEEEEEeecCCceeeeEEEEeeeecccceEEEEE
Q 044920 51 AGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSL 86 (160)
Q Consensus 51 ~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 86 (160)
+|-.+.+++.+|- |++.+|.+++.+ |++
T Consensus 25 ~g~~kEf~lpsGk-------R~D~id~~~k~I-yEL 52 (89)
T PF15650_consen 25 GGREKEFRLPSGK-------RPDFIDFETKII-YEL 52 (89)
T ss_pred ccceeeeecCCCC-------cCccccCCcceE-EEe
Confidence 4667778887774 888899888655 665
No 106
>PRK14686 hypothetical protein; Provisional
Probab=23.66 E-value=2.5e+02 Score=19.71 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=41.3
Q ss_pred EEEEEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044920 82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNFVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156 (160)
Q Consensus 82 ~~y~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~ 156 (160)
-.|+|++-+ +..-.+.|-++.. +|.++|-..+.+........|.+.+. ......+.++-+.||..++
T Consensus 22 ~Gy~il~rN-----~r~~~GEIDlIa~-~~~~lvFVEVKtR~~~~~g~~~eaV~--~~K~~rl~~aA~~yl~~~~ 88 (119)
T PRK14686 22 KGYTILERN-----YRFQKAEIDIIAQ-KGNILVIVEVKTRSSSDFGNPQDFVK--PKKIQLLVKAVNHYIEDKD 88 (119)
T ss_pred CCCEEEEEE-----ecCCCCcEEEEEC-cCCEEEEEEEEecCCCCCCChhHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 357777765 4445688888887 45677777777765433222223221 2345677777888887765
No 107
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=22.80 E-value=56 Score=26.41 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCc
Q 044920 142 LAMYKVVENYLMQNPE 157 (160)
Q Consensus 142 ~~~~k~~e~~l~~~~~ 157 (160)
.+++++|+.||.+||.
T Consensus 220 D~LYrAID~YLk~Hp~ 235 (258)
T PF03000_consen 220 DGLYRAIDIYLKAHPG 235 (258)
T ss_pred chHHHHHHHHHHHccc
Confidence 4789999999999986
No 108
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.37 E-value=2.8e+02 Score=19.32 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=55.1
Q ss_pred EEEEecCCHHHHHHHhhhccCccchhhcc---cceeEEEEEcCCCCCCcEEEEEeecCCceeeeEEEEeeeecccceEEE
Q 044920 8 DEYTSPISPARLFKALIVDSHNLIPKLMP---QAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY 84 (160)
Q Consensus 8 ~e~~i~apa~~vW~~~~~d~~~~~p~~~P---~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
.+.++++||+.+++.+. +.- +.++-- ..+..-++ .|.--.=.+..+. .++=+|+.+.+ ++.|.+
T Consensus 3 I~~~l~v~a~~ff~~l~-~s~--~~DI~~~tgk~~~~~~L------~G~~Y~K~~~~~~---~~~v~It~~~~-~~~Y~~ 69 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLI-DSL--LYDIKQATGKKLPVKQL------KGFSYQKKFKNKR---EAKVKITEYEP-NKRYAA 69 (120)
T ss_pred EEEEecCCHHHHHHHHH-HHH--HHHHHHHcCCCCChhhc------CCcEEEEEcCCCC---EEEEEEEEEcC-CCEEEE
Confidence 35579999999999986 322 222211 00100011 1211111222222 33334666644 446666
Q ss_pred EEEecCcCCcCceeEEEEEEeeecCCCCCeEEEEEEEEEcC
Q 044920 85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG 125 (160)
Q Consensus 85 ~i~eg~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 125 (160)
+.... ...+..+.++.|.++|.|.|+.+=++++.+
T Consensus 70 ~~~s~------~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 70 TFSSS------RGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEEec------CCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 65321 345889999999988889999887777543
No 109
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=22.33 E-value=1.4e+02 Score=24.02 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcCc
Q 044920 138 KEKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 138 ~~~~~~~~k~~e~~l~~~~~~~ 159 (160)
.+....+.+.+|+++.++|+.|
T Consensus 244 ~~~t~~~~~~lE~~Ir~~PeQW 265 (289)
T PRK08905 244 AADAAVINAEIERLIRRFPTQY 265 (289)
T ss_pred HHHHHHHHHHHHHHHHcCcHHh
Confidence 3578899999999999999865
No 110
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=21.96 E-value=1.3e+02 Score=24.27 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhcCCcCc
Q 044920 139 EKSLAMYKVVENYLMQNPEEY 159 (160)
Q Consensus 139 ~~~~~~~k~~e~~l~~~~~~~ 159 (160)
+....+.+.+|+.+..+|+.|
T Consensus 267 ~~~~~~n~~lE~~Ir~~PeQw 287 (305)
T PRK08025 267 QAAAYMNKIIEKEIMRAPEQY 287 (305)
T ss_pred HHHHHHHHHHHHHHHcCcHHH
Confidence 356777899999999999866
No 111
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=20.28 E-value=4.2e+02 Score=20.54 Aligned_cols=119 Identities=13% Similarity=-0.015 Sum_probs=65.3
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccCccchhhcccceeEEEEEcCCCCCCcEEEEEeec---CCceeeeEEEEeeeec--c
Q 044920 4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE---GNQVKCSKNRVDALDL--E 78 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~---g~~~~~~kErl~~~D~--~ 78 (160)
.....+++|++|++.|=..+- + . -+.|-..+.++-.+..-|+.. -|-+..+.. -..-..+.-|--..|. .
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl-~--~-R~~WD~~~~~~~~ie~ld~~t-di~~y~~~~~~P~~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVL-R--E-RHLWDEDFLQWKVVETLDKQT-EVYQYVLNCMAPHPSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-h--h-HhhHHhhcceeEEEEEeCCCc-EEEEEEeecCCCCCCCEEEEEEEEEEeCCCC
Confidence 456778899999999987775 5 3 478998755553333334211 122222211 1111344444333333 2
Q ss_pred cceEEEEEEecC-cCCcC---ceeEEEEEEeeecCCCCCeEEEEEEEEEcCCc
Q 044920 79 NFSYKYSLIEGD-VLMDK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNF 127 (160)
Q Consensus 79 ~~~~~y~i~eg~-~~~~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~ 127 (160)
...+.+.-++.. .++.+ ...+.+-+-++|.++|+|.+++-+..++++-.
T Consensus 127 ~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~~ 179 (205)
T cd08909 127 ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGHS 179 (205)
T ss_pred cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCCC
Confidence 233333333332 22111 22344556788998889999999999998754
Done!