Query 044922
Match_columns 684
No_of_seqs 149 out of 1297
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 3E-122 7E-127 997.0 34.7 606 21-667 46-735 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 4E-118 8E-123 1014.5 49.5 601 22-660 2-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1E-99 2E-104 880.7 43.3 575 37-653 11-649 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 3.7E-98 8E-103 865.8 51.4 584 42-655 1-623 (624)
5 TIGR00733 putative oligopeptid 100.0 4.5E-80 9.7E-85 698.5 47.2 555 42-656 1-590 (591)
6 COG1297 Predicted membrane pro 100.0 6.9E-63 1.5E-67 532.2 37.6 566 39-659 11-617 (624)
7 PF03169 OPT: OPT oligopeptide 94.3 4.5 9.8E-05 47.7 21.5 112 185-339 505-620 (624)
8 TIGR00733 putative oligopeptid 92.1 14 0.0003 43.2 20.5 152 492-653 89-266 (591)
9 PF10529 Hist_rich_Ca-bd: Hist 59.9 5.9 0.00013 22.6 1.2 13 9-21 2-14 (15)
10 TIGR02106 cyd_oper_ybgT cyd op 52.1 19 0.00041 24.6 2.8 18 47-64 5-22 (30)
11 PRK14749 hypothetical protein; 50.4 22 0.00048 24.0 2.9 18 47-64 5-22 (30)
12 PF08173 YbgT_YccB: Membrane b 49.6 22 0.00048 23.9 2.8 18 47-64 5-22 (28)
13 COG4890 Predicted outer membra 42.9 32 0.0007 24.0 2.9 19 47-65 5-23 (37)
14 PF13829 DUF4191: Domain of un 35.7 2.4E+02 0.0051 28.8 9.0 46 377-425 24-69 (224)
15 PF09490 CbtA: Probable cobalt 34.9 1.3E+02 0.0028 30.8 7.3 44 19-70 56-100 (227)
16 PF11674 DUF3270: Protein of u 33.5 57 0.0012 28.3 3.7 81 9-93 4-87 (90)
17 PF05915 DUF872: Eukaryotic pr 29.7 88 0.0019 28.5 4.5 18 43-60 39-56 (115)
18 TIGR00728 OPT_sfam oligopeptid 27.0 2.5E+02 0.0053 33.5 8.9 58 266-338 586-647 (654)
19 COG1297 Predicted membrane pro 26.3 5E+02 0.011 30.3 10.5 130 483-621 94-233 (624)
20 PF10580 Neuromodulin_N: Gap j 25.3 26 0.00056 23.8 0.2 25 6-30 6-31 (32)
21 KOG1289 Amino acid transporter 25.1 93 0.002 35.8 4.6 28 4-31 15-42 (550)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-122 Score=996.99 Aligned_cols=606 Identities=18% Similarity=0.276 Sum_probs=547.9
Q ss_pred CCCccchhhhhcccCCCCCC----CcchHHHHHHHHHHHHHHHHHHHhhcccccccch---hHHHHHHHHHHHHHHHHHh
Q 044922 21 DGEKLVMEDAFKDVEVPSWR----KQITFRAMVTSLLLSIVFNFIVCKLNLTTGVIPS---LNVAAGLLGFAIVKAWTSL 93 (684)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~----~~lT~Ra~ilG~ll~~l~~~~n~~~~lk~g~~~~---~si~~~lls~~ig~~~~~~ 93 (684)
||+|.||.+++ ++.||++| |++|||+|++|++.|++++.+|++|++| +|+ ..+.+|++.+|+||+|+|.
T Consensus 46 ed~~~spv~EV-rl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R---~~~lsis~i~aQi~~~PlGklma~~ 121 (761)
T KOG2262|consen 46 EDEEDSPVPEV-RLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYR---YPPLSISAIVAQIATYPLGKLMAKT 121 (761)
T ss_pred cccccCcchhh-eeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhccc---CCCeehHHHHHHHHHHhHHHHHHHh
Confidence 67778888888 77777665 6999999999999999999999999999 566 4558999999999999999
Q ss_pred hhhc----------CCCCCCCCcchhhhhhhhhhhcccccccchhhhhHHHHHHHHhhhhcCCCCCCcccccchhHHHHH
Q 044922 94 LEKF----------GVLKQPFTRQENTVIQTCVVASSGIAFSSGTASYLLGMSTRVAALADSGNTPANVKQLSLGWMFGF 163 (684)
Q Consensus 94 lp~~----------~lnpgpfs~kE~~iiqt~asa~~~~~~~~~~a~~i~a~~~l~~~~~~~g~~p~~~~~~~~~~~~~~ 163 (684)
||++ ++||||||.|||+++++.++++++ +++++.|+..+++||++. .+++.++++
T Consensus 122 lP~~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~sg----~aYat~Ii~~~k~fY~~~-----------l~f~~~~ll 186 (761)
T KOG2262|consen 122 LPTWKFGLGGRWSFSLNPGPFNVKEHVLITIFANIGSG----TAYATHIITAQKAFYKRN-----------LSFGYAFLL 186 (761)
T ss_pred CCceeeecCcceEEEeCCCCCcchheeeeehhhhccCc----chhhhHHHHHHHHHHhcc-----------ccHHHHHHH
Confidence 9983 479999999999999999998654 579999999999999873 578899999
Q ss_pred HHHHHHHHhhhhccceeeEEeccCCcCchhhHHHHHHHhcCCCcchhhh-hHHHHHHHHHHHHHHHHHHH----------
Q 044922 164 LFAVSFVGLFSIVPLRKMMILKYKLTYPSGTATAYLINSFHTPKGAKLA-VKQVAVLLKSFCVSFAWAFF---------- 232 (684)
Q Consensus 164 ~l~~~l~G~~~a~~lRr~lV~p~~l~fP~~lata~l~~alh~~~~~~~a-~~~~~~f~~~~~~~f~~~~~---------- 232 (684)
++++|++|+++|+++||++|+|++|.||+.|++++|+|+||++|+++++ .+|+|||+++|+++|+|+||
T Consensus 187 ~lttQ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~ 266 (761)
T KOG2262|consen 187 VLTTQLLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSS 266 (761)
T ss_pred HHHHHHhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999999999997655544 68999999999999999998
Q ss_pred ----HHHhcccc--cccccccccccccccCcceeeeccc--ccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 044922 233 ----QWFFAVAD--GCGFSSFPTFGLKAYKQKFYFDFSS--TYVGVGMICPYMVNISLMIGAILSWGIMWPLIEKNKGSW 304 (684)
Q Consensus 233 ----~wi~p~~~--~~~~~~~~g~Gl~~~~~~~~~Dws~--~~~g~gll~p~~~~~~~~~G~vl~~~ii~P~l~~~~n~w 304 (684)
||+.|.+. ++++++..|+|+++ ++|||++ +|+|+|+.+|+++.+|.++|.++..+|+.|++|+ +|.|
T Consensus 267 ~swvcW~~P~s~~~~qi~sg~~GLGi~~----~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~-~n~~ 341 (761)
T KOG2262|consen 267 FSWVCWIWPSSITANQIGSGLTGLGIGP----FTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYW-TNTY 341 (761)
T ss_pred hheeeEeccccHHHHHhccccccccccc----ccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhh-ccce
Confidence 78888763 57789999999998 8999998 4899999999999999999999999999999998 6999
Q ss_pred CCCCCCCCCccccc---------------------chh----hhHHHHHHHHHH--HHHHHHHHHHHH----HHHHHHhh
Q 044922 305 YSADLPDSSLHGLQ---------------------GYR----VFIAIAMMLGDG--FYHVILMLIKTF----GSLANAWG 353 (684)
Q Consensus 305 ~~~~~p~~s~~~~~---------------------~y~----~~~~~~~~~~~g--~~~l~~~i~~~~----~~i~~~~~ 353 (684)
+.+++|+.|++.+| +|+ +|+++...+++| ++++++.+.|.+ ||+|++.|
T Consensus 342 ~a~~fPI~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~ 421 (761)
T KOG2262|consen 342 DAKYFPIFSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTK 421 (761)
T ss_pred ecceeceecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHH
Confidence 99999998875443 344 688887777665 789999999975 99999887
Q ss_pred hhhhcccccccccchhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHHHHHHhhhcceee
Q 044922 354 AEVADQNTQITNYDELQRKEYFLKDQIPNWAALLGYIFLAAISIVVVPIIFH--QLKWYHILVAYVIAPVLAFCNAYGCG 431 (684)
Q Consensus 354 ~~~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~~v~~~l~i~~~~~~~~--~lp~~~~llai~l~~i~~~~~~~~~g 431 (684)
... ++..|.|+|+|+ +|||||+|||++.++++++++++.++++.+ |+|||++++|+++++++.+|.+.+.|
T Consensus 422 ~~~------~k~~DiHtrlMk-kYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~A 494 (761)
T KOG2262|consen 422 KAF------NKKMDIHTRLMK-KYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQA 494 (761)
T ss_pred hcc------ccCCCHHHHHHH-HhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhh
Confidence 653 345789999998 699999999999999999999999999998 99999999999999999999999999
Q ss_pred eecCccchhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChhhHHHHHHHHHHHhHhH
Q 044922 432 LTDWSLASNYGKLAIILFSAWVGLDTGGVIAGLASCGVMMSIVATASDLMQDFKTGYLTLSSPRSMFLSQVIGTALGCFI 511 (684)
Q Consensus 432 ~Tg~~p~s~l~~isqli~G~~~G~~p~~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~y~~~pPR~~f~aQ~iG~ivg~~v 511 (684)
.||++|+ +|+++|+|.||+. |+.|+|||+||.|+++++.||..++||+|+|||||+|||.||.+|++||+++++|
T Consensus 495 tTNq~~G--LNiitE~i~Gy~~---PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~V 569 (761)
T KOG2262|consen 495 TTNQTPG--LNIITEYIIGYIY---PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFV 569 (761)
T ss_pred hccCCcc--HHHHHHHHHHhhc---CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheee
Confidence 9999999 9999999999999 6668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHhcCCCCC--CCCCCCCchhHHhhhhhhh-cccCCCCCCh---hhHHHHHHHHHHHHH---HHHHHHHHhc
Q 044922 512 TPLVF-WIFYKAYPLGD--PEGSFPAPYGQLYRGIALL-GVQGLGSLPK---HCVELAIGFFVAAIA---INTIQEALLR 581 (684)
Q Consensus 512 ~~~v~-~ll~~~~~i~~--~~~~~~aP~a~~~~s~av~-g~~G~~~l~~---~~~~~~~~~~ig~~~---~~ll~~~~p~ 581 (684)
+.+|. |++.+..++|+ |++.|+||..++++++|++ |++||+|+|+ .|..+.|+|++|+++ .|+++|++|+
T Consensus 570 n~gv~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk 649 (761)
T KOG2262|consen 570 NLGVAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPK 649 (761)
T ss_pred eHHhHHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcch
Confidence 99997 56778889997 4578999999999999999 9999999997 388999999999884 8899999998
Q ss_pred cccccchhhcccccchhccccccchh----hHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhhhHhHHHHHH-HHH
Q 044922 582 RETKYMIYRFIPSPMCMAIPFYLGGY----FAIDMCVGSLILFLWRMKNRTSADNFSPAVASGLICGDSLWGIPAA-VLS 656 (684)
Q Consensus 582 ~~~~~~~~~~vp~p~~~~~~~~lp~~----~~~~~~~G~~i~~~~~r~~~~~~~~y~~~laaGLiaG~al~gvi~a-~l~ 656 (684)
. +|.+++|.|++++....+||+ +++.+.+|.+.+++++||++.||+||||+++||||||.+++|++++ +++
T Consensus 650 ~----~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~ 725 (761)
T KOG2262|consen 650 K----KWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQ 725 (761)
T ss_pred h----hhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheec
Confidence 4 567889999999999999975 5566777888888999999999999999999999999999999998 999
Q ss_pred hcCCCCCceee
Q 044922 657 LAGVNAPICMK 667 (684)
Q Consensus 657 ~~g~~~~~~~~ 667 (684)
+.|++.+ ||-
T Consensus 726 ~~~~~~~-WWG 735 (761)
T KOG2262|consen 726 YPGISLN-WWG 735 (761)
T ss_pred cCCCccc-ccc
Confidence 9999997 884
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=3.8e-118 Score=1014.53 Aligned_cols=601 Identities=17% Similarity=0.238 Sum_probs=535.8
Q ss_pred CCccchhhhhc-ccCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHhhhhc---
Q 044922 22 GEKLVMEDAFK-DVEVPSWRKQITFRAMVTSLLLSIVFNFIVCKLNLTTGVIPSLNVAAGLLGFAIVKAWTSLLEKF--- 97 (684)
Q Consensus 22 ~~~~~~~~~~~-~~~~~~~~~~lT~Ra~ilG~ll~~l~~~~n~~~~lk~g~~~~~si~~~lls~~ig~~~~~~lp~~--- 97 (684)
|+||+||.+.. +....+++|++|+|+|++|++++++++++|++|++|++..+..++++||++||+||+|+|++|++
T Consensus 2 ~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~ 81 (681)
T TIGR00727 2 FDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTIT 81 (681)
T ss_pred CCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 55666666554 44444556899999999999999999999999999999888889999999999999999999973
Q ss_pred ------CCCCCCCCcchhhhhhhhhhhcccccccchhhhhHHHHHHHHhhhhcCCCCCCcccccchhHHHHHHHHHHHHH
Q 044922 98 ------GVLKQPFTRQENTVIQTCVVASSGIAFSSGTASYLLGMSTRVAALADSGNTPANVKQLSLGWMFGFLFAVSFVG 171 (684)
Q Consensus 98 ------~lnpgpfs~kE~~iiqt~asa~~~~~~~~~~a~~i~a~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~l~~~l~G 171 (684)
++||||||+|||+++|+||+++.+ .+++..++..++++|++ +.++++++++++++|++|
T Consensus 82 ~~g~~~~lNPGPF~~KEh~liti~a~~~~~----~~y~~~~i~~~~~fy~~-----------~~~~g~~il~~lstq~~G 146 (681)
T TIGR00727 82 IRGRKYNIIPGPFNVKEHMFITLMYAVSFG----AAYTTDIILAQKLFYKS-----------AFGFGYQFLLSLSTQFIG 146 (681)
T ss_pred cccceeccCCCCCChhcceeeeeeeehhcc----HHHHHHHHHHHHHHhCC-----------CCCHHHHHHHHHHHHHHH
Confidence 489999999999999999998754 35788888889999976 247889999999999999
Q ss_pred hhhhccceeeEEeccCCcCchhhHHHHHHHhcCCCcchhh---hhHHHHHHHHHHHHHHHHHHH--------------HH
Q 044922 172 LFSIVPLRKMMILKYKLTYPSGTATAYLINSFHTPKGAKL---AVKQVAVLLKSFCVSFAWAFF--------------QW 234 (684)
Q Consensus 172 ~~~a~~lRr~lV~p~~l~fP~~lata~l~~alh~~~~~~~---a~~~~~~f~~~~~~~f~~~~~--------------~w 234 (684)
+++|+++||++|+|++|+||+++++++|+|+||++++++. .++|+|+|+++|+++|+|+|+ ||
T Consensus 147 ~g~Ag~lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cw 226 (681)
T TIGR00727 147 FGFAGILRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTW 226 (681)
T ss_pred HHHHHHhhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Confidence 9999999999999999999999999999999998654322 148999999999999999997 89
Q ss_pred Hhcccc--cccccccccccccccCcceeeecccc--cccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCC
Q 044922 235 FFAVAD--GCGFSSFPTFGLKAYKQKFYFDFSST--YVGVGMICPYMVNISLMIGAILSWGIMWPLIEKNKGSWYSADLP 310 (684)
Q Consensus 235 i~p~~~--~~~~~~~~g~Gl~~~~~~~~~Dws~~--~~g~gll~p~~~~~~~~~G~vl~~~ii~P~l~~~~n~w~~~~~p 310 (684)
++|.+. +.++++..|+|+++. +|||||++ +.|+|+++|+++++|+++|.+++++++.|++|| +|.|+++++|
T Consensus 227 i~P~n~~~~~i~g~~~GlGl~p~---~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy-~N~w~~~~lP 302 (681)
T TIGR00727 227 IKPNNINLNQIFGGSTGLGINPI---SSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYY-SNTWYCQYLP 302 (681)
T ss_pred ccCcchhhhhhhccccCCCcCCc---CcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-cccccccccC
Confidence 999873 677888899999975 89999985 588999999999999999999999999999998 7999999999
Q ss_pred CCCccccc---------------------chh----hhHHHHHHHHHHH--HHHHHHHHHHH----HHHHHHhhhhhhcc
Q 044922 311 DSSLHGLQ---------------------GYR----VFIAIAMMLGDGF--YHVILMLIKTF----GSLANAWGAEVADQ 359 (684)
Q Consensus 311 ~~s~~~~~---------------------~y~----~~~~~~~~~~~g~--~~l~~~i~~~~----~~i~~~~~~~~~~~ 359 (684)
++|++.+| +|+ +|++++..+.+|+ +.+.+++.|.+ |++++++|.
T Consensus 303 i~s~~~fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~----- 377 (681)
T TIGR00727 303 ISSNGLYDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD----- 377 (681)
T ss_pred CccchhhhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-----
Confidence 99976543 344 6888888887774 88888888875 677766652
Q ss_pred cccccccchhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhcceeeeecCccch
Q 044922 360 NTQITNYDELQRKEYFLKDQIPNWAALLGYIFLAAISIVVVPIIFHQLKWYHILVAYVIAPVLAFCNAYGCGLTDWSLAS 439 (684)
Q Consensus 360 ~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~~v~~~l~i~~~~~~~~~lp~~~~llai~l~~i~~~~~~~~~g~Tg~~p~s 439 (684)
++.+|.|.|+|+ +|||||+|||++++++++++++++++.+++|+|||++++++++++++.+|.+.++|+||+++.
T Consensus 378 ---~~~~D~h~rlM~-~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~- 452 (681)
T TIGR00727 378 ---DDYPDPHSNLMK-AYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVCLIFNFVFLIPTTILQATTNISFG- 452 (681)
T ss_pred ---CCCCChhHHHhh-cCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccc-
Confidence 346789999998 899999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChhhHHHHHHHHHHHhHhHHHHHH-HH
Q 044922 440 NYGKLAIILFSAWVGLDTGGVIAGLASCGVMMSIVATASDLMQDFKTGYLTLSSPRSMFLSQVIGTALGCFITPLVF-WI 518 (684)
Q Consensus 440 ~l~~isqli~G~~~G~~p~~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~y~~~pPR~~f~aQ~iG~ivg~~v~~~v~-~l 518 (684)
+|+++|+|+|+++ |++|+|||++|++++++.+||.++++|+|+|||+|+|||+||++|++|+++|++|+++++ ++
T Consensus 453 -ln~l~eli~Gy~~---PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~ 528 (681)
T TIGR00727 453 -LNVLTEFIVGYAL---PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWA 528 (681)
T ss_pred -hhHHHHHHhhhcc---CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 667899999999999999999999999999999999999999999999999999999998 66
Q ss_pred HHhcCCCCCC--CCCCCCchhHHhhhhhhh-cccCCCCCCh---hhHHHHHHHHHHHHH---HHHHHHHHhccccccchh
Q 044922 519 FYKAYPLGDP--EGSFPAPYGQLYRGIALL-GVQGLGSLPK---HCVELAIGFFVAAIA---INTIQEALLRRETKYMIY 589 (684)
Q Consensus 519 l~~~~~i~~~--~~~~~aP~a~~~~s~av~-g~~G~~~l~~---~~~~~~~~~~ig~~~---~~ll~~~~p~~~~~~~~~ 589 (684)
+.+..|+|++ +++|+||++++++++|++ |++||+|+++ .|..+.++|++|+++ .|+++|++|| ++.
T Consensus 529 l~~i~~~c~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~-----~~~ 603 (681)
T TIGR00727 529 IGNIDNFCTADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPK-----FYP 603 (681)
T ss_pred HhcCcccCCCCCCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcch-----hhh
Confidence 7888899985 479999999999999999 9999999997 388999999999985 8899999998 667
Q ss_pred hcccccchhccccccchh----hHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhhhHhHHHHHH-HHHhcCC
Q 044922 590 RFIPSPMCMAIPFYLGGY----FAIDMCVGSLILFLWRMKNRTSADNFSPAVASGLICGDSLWGIPAA-VLSLAGV 660 (684)
Q Consensus 590 ~~vp~p~~~~~~~~lp~~----~~~~~~~G~~i~~~~~r~~~~~~~~y~~~laaGLiaG~al~gvi~a-~l~~~g~ 660 (684)
|++|+|++++....+|++ ++....+|.+.++++|||+++||+||||+++||||+|+++++++++ ++++.|+
T Consensus 604 ~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 604 RYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred hhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 899999999986777754 4455678999999999999999999999999999999999999988 5655543
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=9.5e-100 Score=880.71 Aligned_cols=575 Identities=27% Similarity=0.458 Sum_probs=472.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHhhhhc-----CCCCCCCCcchhhh
Q 044922 37 PSWRKQITFRAMVTSLLLSIVFNFIVCKLNLTTGVIPSLNVAAGLLGFAIVKAWTSLLEKF-----GVLKQPFTRQENTV 111 (684)
Q Consensus 37 ~~~~~~lT~Ra~ilG~ll~~l~~~~n~~~~lk~g~~~~~si~~~lls~~ig~~~~~~lp~~-----~lnpgpfs~kE~~i 111 (684)
.+++|++|+|+|++|++++++++++|+|+++|+|+.+..++++|+++|+++|+|+|+||++ ++||||||+||||+
T Consensus 11 dp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~~~~~~lnpgpft~kE~~~ 90 (654)
T TIGR00728 11 DPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWEGWKFSLNPGPFNVKENNL 90 (654)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCccccceecCCCCCChhhhee
Confidence 3456899999999999999999999999999999999999999999999999999999974 68999999999999
Q ss_pred hhhhhhhcccccccchhhhhHHHHHHHHhhhhcCCCCCCcccccchhHHHHHHH--HHHHHHhhhhccceeeEEeccCCc
Q 044922 112 IQTCVVASSGIAFSSGTASYLLGMSTRVAALADSGNTPANVKQLSLGWMFGFLF--AVSFVGLFSIVPLRKMMILKYKLT 189 (684)
Q Consensus 112 iqt~asa~~~~~~~~~~a~~i~a~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~l--~~~l~G~~~a~~lRr~lV~p~~l~ 189 (684)
+||+||++++.+ ++..++..++++|++ +.++++++++++ ..+++|+++|+|+||++|+|++|+
T Consensus 91 iq~~asa~~~~~----~~~~~i~a~~~~~~~-----------~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l~ 155 (654)
T TIGR00728 91 IQTAASACGGLA----YAIFILPAQKMFYTS-----------NFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKLP 155 (654)
T ss_pred EEeeeeccccHH----HHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCccccc
Confidence 999999987653 334444445677754 124566544444 445599999999999999999999
Q ss_pred CchhhHHHHHHHhcCCC----cchhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccCcceeeeccc
Q 044922 190 YPSGTATAYLINSFHTP----KGAKLAVKQVAVLLKSFCVSFAWAFFQWFFAVADGCGFSSFPTFGLKAYKQKFYFDFSS 265 (684)
Q Consensus 190 fP~~lata~l~~alh~~----~~~~~a~~~~~~f~~~~~~~f~~~~~~wi~p~~~~~~~~~~~g~Gl~~~~~~~~~Dws~ 265 (684)
||+++|+++++++||++ ++.+.+|..+..+...|...+.|.|++|+.|.+.. +....|+|+++ ++|||++
T Consensus 156 ~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~p~~~~--~~~fgglg~~~----~~f~w~~ 229 (654)
T TIGR00728 156 WPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFFPGFTA--FQTFGGLGSGS----IGFGWQQ 229 (654)
T ss_pred CCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHhcCCcc--ccccccccccc----cceecHH
Confidence 99999999999997543 23233333334456778888999999999996431 11123566664 5677765
Q ss_pred --ccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCcccccchhh-hHHHHHHHHHHHH-------
Q 044922 266 --TYVGVGMICPYMVNISLMIGAILSWGIMWPLIEKNKGSWYSADLPDSSLHGLQGYRV-FIAIAMMLGDGFY------- 335 (684)
Q Consensus 266 --~~~g~gll~p~~~~~~~~~G~vl~~~ii~P~l~~~~n~w~~~~~p~~s~~~~~~y~~-~~~~~~~~~~g~~------- 335 (684)
+++|+|+++|+++++|+++|++++|+++.|++|| +|.|.++++|+++++.+|+|.. |.+++.|+.+++.
T Consensus 230 s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~-~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l~~~~~ 308 (654)
T TIGR00728 230 SSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYY-KNTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTLVKPLY 308 (654)
T ss_pred hHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccCCCcchhhhcCCCceeeeeeEEEeCCCceecHHHH
Confidence 5899999999999999999999999999999998 6888888899888888877664 7776666655432
Q ss_pred ------------------HHHHHHHHHH----HHHHHHhhhhhhcccccccccchhhhhhh-------hccCCchHHHHH
Q 044922 336 ------------------HVILMLIKTF----GSLANAWGAEVADQNTQITNYDELQRKEY-------FLKDQIPNWAAL 386 (684)
Q Consensus 336 ------------------~l~~~i~~~~----~~i~~~~~~~~~~~~~~~~~~d~~~r~~~-------~~y~~vP~ww~~ 386 (684)
.+...+.|.. |+++++.|+... +..|+|.|.++ ++|+|+|+|||+
T Consensus 309 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~~~~~~~vP~ww~~ 382 (654)
T TIGR00728 309 PIYSPLVLSIDFYALLFNAFSDTIYSFALAHGRDIISARRDHYK------LGRDDHVRLLSRDEDLKVKNYKEVPAWWYL 382 (654)
T ss_pred HHhCcceeeHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh------ccCCCChHHHhhcccccccccCcCcHHHHH
Confidence 2223333332 444444433211 11122222221 257999999999
Q ss_pred HHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHHhhhcceeeeecCccchhhhHHHHHHHHHHhcCCchhHHHHH
Q 044922 387 LGYIFLAAISIVVVPIIF--HQLKWYHILVAYVIAPVLAFCNAYGCGLTDWSLASNYGKLAIILFSAWVGLDTGGVIAGL 464 (684)
Q Consensus 387 ~~~~v~~~l~i~~~~~~~--~~lp~~~~llai~l~~i~~~~~~~~~g~Tg~~p~s~l~~isqli~G~~~G~~p~~~~a~l 464 (684)
.++++++++++++++.++ +++|||++++++++++++++|+++++|+| ||.+++++++|+++|+++ |+++++||
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~t--np~~~l~~~~~li~g~~~---pg~~~a~l 457 (654)
T TIGR00728 383 SLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGIT--NPVSGLNIITELIIGYIL---PGRPLANL 457 (654)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEee--cccchhhHHHHHhheeec---CCcccHHH
Confidence 999999999998888886 78999999999999999999999999999 777779999999999999 77789999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCChhhHHHHHHHHHHHhHhHHHHHHHHHHhcCCCCCCCCCCCCchhHHhhhhh
Q 044922 465 ASCGVMMSIVATASDLMQDFKTGYLTLSSPRSMFLSQVIGTALGCFITPLVFWIFYKAYPLGDPEGSFPAPYGQLYRGIA 544 (684)
Q Consensus 465 ~~~~~~~~~~~qA~~~~~DlK~G~y~~~pPR~~f~aQ~iG~ivg~~v~~~v~~ll~~~~~i~~~~~~~~aP~a~~~~s~a 544 (684)
+++++++++++||+|++||||+|||+|+|||+||++|++|+++|++|++++++++.++++.. +++|+||++++|+++|
T Consensus 458 ~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~~--~~~~~~p~a~~~~~aa 535 (654)
T TIGR00728 458 AFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGNQ--NNNFTCPNALVFYNAS 535 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCccCCcccchhhhe
Confidence 99999999999999999999999999999999999999999999999999999988999863 5789999999999999
Q ss_pred hh-cccCCCCCCh---hhHHHHHHHHHH--HHHHHHHHHHHhccccccchhhcccccchhccccccchhhHHHHH----H
Q 044922 545 LL-GVQGLGSLPK---HCVELAIGFFVA--AIAINTIQEALLRRETKYMIYRFIPSPMCMAIPFYLGGYFAIDMC----V 614 (684)
Q Consensus 545 v~-g~~G~~~l~~---~~~~~~~~~~ig--~~~~~ll~~~~p~~~~~~~~~~~vp~p~~~~~~~~lp~~~~~~~~----~ 614 (684)
++ |++||+ +++ .|..+.+++++| .++.++.+|++| |+++|+|+|+++++++++|++++++++ +
T Consensus 536 ~~~g~~Gp~-~f~~~~~y~~~~~~~l~G~~~i~~~~~~~~~p------~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~v 608 (654)
T TIGR00728 536 LIWGVIGPK-IFSGKGLYCGLMWFFLVGVGAVLVWLVRKLFP------KWIKYINPPVAVGGGGYIPPATAVNYSTWAAV 608 (654)
T ss_pred eeeccccch-hcCCCCccHHHHHHHHHHHHHHHHHHHHHHcc------chhhhcCHHHhhhhhhccCCcchhhhhHHHHH
Confidence 98 889977 775 367777777755 234667777766 356889999999999999999999999 9
Q ss_pred HHHHHHHHHhcccccc--ccchhhhhhhhhhhhHhHHHHHH
Q 044922 615 GSLILFLWRMKNRTSA--DNFSPAVASGLICGDSLWGIPAA 653 (684)
Q Consensus 615 G~~i~~~~~r~~~~~~--~~y~~~laaGLiaG~al~gvi~a 653 (684)
|++++++|+||+++|| +||||++||||||||+|+|++++
T Consensus 609 G~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviif 649 (654)
T TIGR00728 609 GGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIF 649 (654)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999888776 99999999999999999999986
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=3.7e-98 Score=865.76 Aligned_cols=584 Identities=28% Similarity=0.470 Sum_probs=480.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhhhhhhhccc
Q 044922 42 QITFRAMVTSLLLSIVFNFIVCKLNLTTGVIPSLNVAAGLLGFAIVKAWTSLLEKFGVLKQPFTRQENTVIQTCVVASSG 121 (684)
Q Consensus 42 ~lT~Ra~ilG~ll~~l~~~~n~~~~lk~g~~~~~si~~~lls~~ig~~~~~~lp~~~lnpgpfs~kE~~iiqt~asa~~~ 121 (684)
|+|+|++++|++++++++++|+|+++|+|+.+..++++||++|+++|.++|..+++++||||||+||||++||+||++++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~ 80 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGG 80 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhh
Confidence 79999999999999999999999999999999999999999999999999977788999999999999999999999887
Q ss_pred ccccchhhhhHHHHHHHHhhhhcCCCCCCcccccchhHHHHHHHHHHHHHhhhhccceeeEEeccCCcCchhhHHHHHHH
Q 044922 122 IAFSSGTASYLLGMSTRVAALADSGNTPANVKQLSLGWMFGFLFAVSFVGLFSIVPLRKMMILKYKLTYPSGTATAYLIN 201 (684)
Q Consensus 122 ~~~~~~~a~~i~a~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~l~~~l~G~~~a~~lRr~lV~p~~l~fP~~lata~l~~ 201 (684)
.+.++++...+++. .+|++ +.+++++++++++++++|+++|+|+||++|+|++|+||+++|++++++
T Consensus 81 ~~~a~~~i~~ipa~--~~~~~-----------~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~ 147 (624)
T PF03169_consen 81 MAYAAGFIAAIPAL--LFLGQ-----------PFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELIN 147 (624)
T ss_pred hhhhhhHHHHHHHH--HHhcc-----------chhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHH
Confidence 54444444555554 34443 247788899999999999999999999999999999999999999999
Q ss_pred hcCCCcchhhhhHHHHHHHHHHHHHHHHHHH-HHHhcc----ccccccccccc-ccccccCcceeeeccccccccccccc
Q 044922 202 SFHTPKGAKLAVKQVAVLLKSFCVSFAWAFF-QWFFAV----ADGCGFSSFPT-FGLKAYKQKFYFDFSSTYVGVGMICP 275 (684)
Q Consensus 202 alh~~~~~~~a~~~~~~f~~~~~~~f~~~~~-~wi~p~----~~~~~~~~~~g-~Gl~~~~~~~~~Dws~~~~g~gll~p 275 (684)
+||++++.+.+++|+|+|+++|.++++|+|+ .+++|. +..|+...... .......++++||||++++|+|+++|
T Consensus 148 alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~i~p 227 (624)
T PF03169_consen 148 ALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGLIVP 227 (624)
T ss_pred HhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCeecc
Confidence 9999765567889999999999999999996 445543 22333221111 11111223599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCccccc---------chhhhHHHHHHHHHHHHHH---------
Q 044922 276 YMVNISLMIGAILSWGIMWPLIEKNKGSWYSADLPDSSLHGLQ---------GYRVFIAIAMMLGDGFYHV--------- 337 (684)
Q Consensus 276 ~~~~~~~~~G~vl~~~ii~P~l~~~~n~w~~~~~p~~s~~~~~---------~y~~~~~~~~~~~~g~~~l--------- 337 (684)
+++++|+++|.+++|+++.|++|+.+|.|++.++|+++++.+| +|..|.+.+.+...+.+.+
T Consensus 228 ~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 307 (624)
T PF03169_consen 228 LWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSFAAL 307 (624)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccchhh
Confidence 9999999999999999999999885589999999977765444 4668999999988876655
Q ss_pred HHHHHHHH----HHHHHHhhhhhhc-ccccccccchhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhc--ccchHH
Q 044922 338 ILMLIKTF----GSLANAWGAEVAD-QNTQITNYDELQRKEYFLKDQIPNWAALLGYIFLAAISIVVVPIIF--HQLKWY 410 (684)
Q Consensus 338 ~~~i~~~~----~~i~~~~~~~~~~-~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~~v~~~l~i~~~~~~~--~~lp~~ 410 (684)
.+.+.|.. |++++++++.+++ ++++++++|+|.+.|+ +|+|+|+|||+.++++++++++++++.++ +++|+|
T Consensus 308 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~ 386 (624)
T PF03169_consen 308 TASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMR-TYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWW 386 (624)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhh-hcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchh
Confidence 34555544 4444444322111 1123355677888876 89999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHhhhcceeeeecCccchhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 044922 411 HILVAYVIAPVLAFCNAYGCGLTDWSLASNYGKLAIILFSAWVGLDTGGVIAGLASCGVMMSIVATASDLMQDFKTGYLT 490 (684)
Q Consensus 411 ~~llai~l~~i~~~~~~~~~g~Tg~~p~s~l~~isqli~G~~~G~~p~~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~y~ 490 (684)
+.++++++++++++++++++|+||+||.+++++++|+++|+++ |+++++||+++++++++++||+|++||||+|||+
T Consensus 387 ~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~---pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l 463 (624)
T PF03169_consen 387 GLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLL---PGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYL 463 (624)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 6668999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhHhHHHHHHHHHHhcCCCCCC---CCCCCCchhHHhhhhhhh-cccCCCCCChhhHHHHHHHH
Q 044922 491 LSSPRSMFLSQVIGTALGCFITPLVFWIFYKAYPLGDP---EGSFPAPYGQLYRGIALL-GVQGLGSLPKHCVELAIGFF 566 (684)
Q Consensus 491 ~~pPR~~f~aQ~iG~ivg~~v~~~v~~ll~~~~~i~~~---~~~~~aP~a~~~~s~av~-g~~G~~~l~~~~~~~~~~~~ 566 (684)
|+|||+||++|++|+++|++|++++++++.++|....+ +..+|+|++..|. ++. |+.|+.+ ...|..+.++++
T Consensus 464 ~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~a--av~~g~~~~~~-~~~~~~~~~~~~ 540 (624)
T PF03169_consen 464 GIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWA--AVAWGLIGPQR-GLPYSALPWGFL 540 (624)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHH--HHHHHhcCCcc-cchHHHHHHHHH
Confidence 99999999999999999999999999988665554322 2344555555554 445 7777644 444556667666
Q ss_pred HHHHHHHHHHHHHhccccccchhhcccccchhc----cccccchhhHHHHHHHHHHHHHHHhccccccccchhhhhhhhh
Q 044922 567 VAAIAINTIQEALLRRETKYMIYRFIPSPMCMA----IPFYLGGYFAIDMCVGSLILFLWRMKNRTSADNFSPAVASGLI 642 (684)
Q Consensus 567 ig~~~~~ll~~~~p~~~~~~~~~~~vp~p~~~~----~~~~lp~~~~~~~~~G~~i~~~~~r~~~~~~~~y~~~laaGLi 642 (684)
++.++ .++..... |++|.+++++ +++++|.+.++++++|+++++++|||+++||+||||++|||||
T Consensus 541 ~G~~~-~i~~~l~~---------~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~ 610 (624)
T PF03169_consen 541 IGAVL-PILFWLLQ---------RKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLI 610 (624)
T ss_pred HHHHH-HHHHHHHH---------hhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHH
Confidence 65553 22222111 2355568888 8999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHH
Q 044922 643 CGDSLWGIPAAVL 655 (684)
Q Consensus 643 aG~al~gvi~a~l 655 (684)
|||+|+|++++++
T Consensus 611 aG~~l~~li~~~~ 623 (624)
T PF03169_consen 611 AGEALMGLIIAFL 623 (624)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=4.5e-80 Score=698.50 Aligned_cols=555 Identities=20% Similarity=0.285 Sum_probs=432.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhhhhhhhccc
Q 044922 42 QITFRAMVTSLLLSIVFNFIVCKLNLTTGVIPSLNVAAGLLGFAIVKAWTSLLEKFGVLKQPFTRQENTVIQTCVVASSG 121 (684)
Q Consensus 42 ~lT~Ra~ilG~ll~~l~~~~n~~~~lk~g~~~~~si~~~lls~~ig~~~~~~lp~~~lnpgpfs~kE~~iiqt~asa~~~ 121 (684)
|+|+|++++|++++++++++|+|++||+|+++++|+++++++|.+.|.+.| +|++|||++||++|++++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~ 69 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT 69 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998754 699999999999999987
Q ss_pred ccccchhhhhHHHHHHHHhhhhcCCCCCCcccccchhHHHHHHHHHHHHHhhhhccceeeEEeccCCcCchhhHHHHHHH
Q 044922 122 IAFSSGTASYLLGMSTRVAALADSGNTPANVKQLSLGWMFGFLFAVSFVGLFSIVPLRKMMILKYKLTYPSGTATAYLIN 201 (684)
Q Consensus 122 ~~~~~~~a~~i~a~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~l~~~l~G~~~a~~lRr~lV~p~~l~fP~~lata~l~~ 201 (684)
++ ++...+|++..+-+ +.+.+++..+.++++++++|++|++||||++|++++|+||+++|||++++
T Consensus 70 ~a---g~~~~lPAl~~lg~-----------~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~ 135 (591)
T TIGR00733 70 LS---SVIFVLPALLMLGY-----------WTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLK 135 (591)
T ss_pred HH---HHHHHHHHHHhcCc-----------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Confidence 64 47788888765422 11346778889999999999999999999999999999999999999999
Q ss_pred hcCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH--hcccccccccccccccccccCcceeeecccccccccccccHHHH
Q 044922 202 SFHTPKGAKLAVKQVAVLLKSFCVSFAWAFFQWF--FAVADGCGFSSFPTFGLKAYKQKFYFDFSSTYVGVGMICPYMVN 279 (684)
Q Consensus 202 alh~~~~~~~a~~~~~~f~~~~~~~f~~~~~~wi--~p~~~~~~~~~~~g~Gl~~~~~~~~~Dws~~~~g~gll~p~~~~ 279 (684)
+.+ ++ + .++|.|.++..+..+++|.++.-+ .|.+.. .....|.. .+++++||||+++|.||++|++++
T Consensus 136 ~g~--~g-~-~~~~~~~l~~g~~~s~~~~~~~~~~~~~~~~~----~~~~~g~~--~~~~~~~~SpalvG~G~ivG~~v~ 205 (591)
T TIGR00733 136 AGD--KA-R-NGTGAKPIAYGGILASIYAFLGSLRVWSGTLS----AAKLVGRR--ALYFGSDLSLALIGVGYLVGLNIG 205 (591)
T ss_pred ccc--cc-c-chhhHHHHHHHHHHHHHHHHHHHhccCCchHH----HHHhcCCc--ceEEEecccHHHHcCceeeChHHH
Confidence 853 22 1 345677788888888999887311 111000 00001212 125788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCc--ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 044922 280 ISLMIGAILSWGIMWPLIEKNKGSWYSADLPDSSL--HGLQGYRVFIAIAMMLGDGFYHVILMLIKTFGSLANAWGAEVA 357 (684)
Q Consensus 280 ~~~~~G~vl~~~ii~P~l~~~~n~w~~~~~p~~s~--~~~~~y~~~~~~~~~~~~g~~~l~~~i~~~~~~i~~~~~~~~~ 357 (684)
+++++|++++|+++.|++.. +.|.+++.+..+. ..+..|.+|+|+++|+++|++++.+.+....+.+++.++..+.
T Consensus 206 ~s~~~G~vlaWgvl~P~l~~--~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~ 283 (591)
T TIGR00733 206 FAMFLGGAIAWGVAIPIYTA--KMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEAARR 283 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999874 4677655543211 1122456889999999999999998887777777766654321
Q ss_pred cccccccccchhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhcccch--------H-HHHHHHHHHHHHHHhhhcc
Q 044922 358 DQNTQITNYDELQRKEYFLKDQIPNWAALLGYIFLAAISIVVVPIIFHQLK--------W-YHILVAYVIAPVLAFCNAY 428 (684)
Q Consensus 358 ~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~~v~~~l~i~~~~~~~~~lp--------~-~~~llai~l~~i~~~~~~~ 428 (684)
++ +.++..| ..+|+|.|+...+.++ +++. +....+ +.| + ...+++++++++++..++|
T Consensus 284 ----~~-~~~~~~r----~~~dip~~~v~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~ 350 (591)
T TIGR00733 284 ----RQ-AGEAVLR----TEEDLPINIVLTLVAL-FVIP--LADFLL-YAPILHNIGMAIAVMAVLMLIIGFFVAAIAGY 350 (591)
T ss_pred ----cc-ccccccc----ccccccHHHHHHHHHH-HHHH--HHHHhc-CCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111223 3458999864433221 1111 111122 322 2 4667888889999999999
Q ss_pred eeee--ecCccchhhhHHHHHHHHHHh---cC------CchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChhhH
Q 044922 429 GCGL--TDWSLASNYGKLAIILFSAWV---GL------DTGGVIAGLASCGVMMSIVATASDLMQDFKTGYLTLSSPRSM 497 (684)
Q Consensus 429 ~~g~--Tg~~p~s~l~~isqli~G~~~---G~------~p~~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~y~~~pPR~~ 497 (684)
+.|+ ||.||.|++++++|++++.++ |. .|.++.+|++.+++++.+++||+|++||||+||++|++||+|
T Consensus 351 ~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q 430 (591)
T TIGR00733 351 MAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQ 430 (591)
T ss_pred HhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHH
Confidence 9999 778999999999999999887 21 257789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhcCCCCC-----CCCCCCCchhHHhhhhhhhcccCCCCCChhhHHHHHHHHHHHHHH
Q 044922 498 FLSQVIGTALGCFITPLVFWIFYKAYPLGD-----PEGSFPAPYGQLYRGIALLGVQGLGSLPKHCVELAIGFFVAAIAI 572 (684)
Q Consensus 498 f~aQ~iG~ivg~~v~~~v~~ll~~~~~i~~-----~~~~~~aP~a~~~~s~av~g~~G~~~l~~~~~~~~~~~~ig~~~~ 572 (684)
|++|++|+++|++++++++.++.++|++.+ |+++|++||+..|+++++ |+.+ +.+++. +..++.+.++++
T Consensus 431 ~~aq~iG~~vg~~v~~~v~~ll~~ayg~~~~~~~~~~~~l~APqA~l~~ava~-gi~~-~~l~~~---~i~~ga~~g~~l 505 (591)
T TIGR00733 431 QVALIIGTFVGALVMAPVLNLLIKAYGIAGTPTAKGENALPAPQAFLMAAVTE-GVFT-GTLEWT---MVFIGAGIGIAL 505 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccCCCHHHHHHHHHh-hhcC-CCccHH---HHHHHHHHHHHH
Confidence 999999999999999999999999998753 457899999999999873 3333 233322 233334556678
Q ss_pred HHHHHHHhccccccchhhcccccchhccccccchhhHHHHHHHHHHHHHHHhccccc------cccchhhhhhhhhhhhH
Q 044922 573 NTIQEALLRRETKYMIYRFIPSPMCMAIPFYLGGYFAIDMCVGSLILFLWRMKNRTS------ADNFSPAVASGLICGDS 646 (684)
Q Consensus 573 ~ll~~~~p~~~~~~~~~~~vp~p~~~~~~~~lp~~~~~~~~~G~~i~~~~~r~~~~~------~~~y~~~laaGLiaG~a 646 (684)
.++++..++ +.+|+-.+++.+++|+|+|+++++++++|++++|+|+|++++. .+++++++||||++||+
T Consensus 506 ~~~~~~~~~-----~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~ 580 (591)
T TIGR00733 506 IIIDEILAK-----RGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGES 580 (591)
T ss_pred HHHHHHhhh-----cccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchH
Confidence 888887775 2233333478999999999999999999999999999976532 24689999999999999
Q ss_pred hHHHHHHHHH
Q 044922 647 LWGIPAAVLS 656 (684)
Q Consensus 647 l~gvi~a~l~ 656 (684)
|+|++++++.
T Consensus 581 l~Gv~~A~~~ 590 (591)
T TIGR00733 581 LTGVVFAAII 590 (591)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.9e-63 Score=532.17 Aligned_cols=566 Identities=22% Similarity=0.319 Sum_probs=415.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhhhhhhh
Q 044922 39 WRKQITFRAMVTSLLLSIVFNFIVCKLNLTTGVIPSLNVAAGLLGFAIVKAWTSLLEKFGVLKQPFTRQENTVIQTCVVA 118 (684)
Q Consensus 39 ~~~~lT~Ra~ilG~ll~~l~~~~n~~~~lk~g~~~~~si~~~lls~~ig~~~~~~lp~~~lnpgpfs~kE~~iiqt~asa 118 (684)
..||+|+|++++|+++++++.++|+|+|+|+|++.+.||+++++|+.+.|.++ ++|+.|||++||+||+
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~-----------~~silENNmVQT~ASA 79 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK-----------GSSILENNMVQTQASA 79 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC-----------ccchhhhHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999864 4699999999999999
Q ss_pred cccccccchhhhhHHHHHHHHhhhhcCCCCCCcccccchhHHHHHHHHHHHHHhhhhccceeeEEeccCCcCchhhHHHH
Q 044922 119 SSGIAFSSGTASYLLGMSTRVAALADSGNTPANVKQLSLGWMFGFLFAVSFVGLFSIVPLRKMMILKYKLTYPSGTATAY 198 (684)
Q Consensus 119 ~~~~~~~~~~a~~i~a~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~l~~~l~G~~~a~~lRr~lV~p~~l~fP~~lata~ 198 (684)
++..+ ++....+|++..+.|- .+.+++....++.++|++|+.|++||||.+|.++++|||+|.|+||
T Consensus 80 agtls--a~vIFviPgl~m~g~w-----------~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAE 146 (624)
T COG1297 80 AGTLS--AGVIFVLPGLLMLGYW-----------SGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAE 146 (624)
T ss_pred hcccc--ccEEEechhHHhhccc-----------cCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHH
Confidence 98765 3466778888776542 2346667777888999999999999999999999999999999999
Q ss_pred HHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH---hcccccccccccccccccccCcceeeeccccccccccccc
Q 044922 199 LINSFHTPKGAKLAVKQVAVLLKSFCVSFAWAFFQWF---FAVADGCGFSSFPTFGLKAYKQKFYFDFSSTYVGVGMICP 275 (684)
Q Consensus 199 l~~alh~~~~~~~a~~~~~~f~~~~~~~f~~~~~~wi---~p~~~~~~~~~~~g~Gl~~~~~~~~~Dws~~~~g~gll~p 275 (684)
++++..++|++. +-.+..........+|.++.-- ........+. .|-... .+..+.|++++|.|+++|
T Consensus 147 vL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~~~~~----~~~~~~--~lg~~~S~AliG~GylvG 217 (624)
T COG1297 147 VLKAGNQREGDA---SGIKLIALGGALAALYSLLASGLRVIASSLSAAFS----VGRAAF--ALGLGLSLALIGAGYLVG 217 (624)
T ss_pred HHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHhccceeehhhHHHHHH----hcchhh--hhcccccHHHhCceEEec
Confidence 999987544332 2223344555566666665210 0000000000 011110 255678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCC--cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044922 276 YMVNISLMIGAILSWGIMWPLIEKNKGSWYSADLPDSS--LHGLQGYRVFIAIAMMLGDGFYHVILMLIKTFGSLANAWG 353 (684)
Q Consensus 276 ~~~~~~~~~G~vl~~~ii~P~l~~~~n~w~~~~~p~~s--~~~~~~y~~~~~~~~~~~~g~~~l~~~i~~~~~~i~~~~~ 353 (684)
..+..-++.|.+++|++..|++-+ +.|.+++..... +.-+..+.+|+|+|.+...+++++.+...+..+.++..++
T Consensus 218 l~~~iaml~G~~iaWgvavP~~~~--~~~~p~~~~~~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi~~gi~~~f~ 295 (624)
T COG1297 218 LPAGIAMLIGIFIAWGVAVPLLTL--IVPGPSDQEAGVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPILRGIKATFE 295 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh--cccCCCchhHHHHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999998754 455554322111 1112234589999999999999999888888888887776
Q ss_pred hhhhcccccccccchhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhhhcc----------cchHHHHHHHHHHHHHHH
Q 044922 354 AEVADQNTQITNYDELQRKEYFLKDQIPNWAALLGYIFLAAISIVVVPIIFH----------QLKWYHILVAYVIAPVLA 423 (684)
Q Consensus 354 ~~~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~~v~~~l~i~~~~~~~~----------~lp~~~~llai~l~~i~~ 423 (684)
..+.+ ++...+.|.+ +|+|..|-...+ +++.+.+.....-+. .+-.-+.++++++++.++
T Consensus 296 ~~r~~-----~~~~~~~rte----~Dl~~~~~~~~~-~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~Gflva 365 (624)
T COG1297 296 SARGR-----RRAGAVSRTE----RDLPPKLVLLVL-LATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVA 365 (624)
T ss_pred Hhhcc-----cccccccchh----hcCChhhHHHHH-HHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 54311 1111222443 378877654443 233443333322211 112335566777788888
Q ss_pred hhhcceeeeecC--ccchhhhHHHHHHHHHHh---cC----------CchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 044922 424 FCNAYGCGLTDW--SLASNYGKLAIILFSAWV---GL----------DTGGVIAGLASCGVMMSIVATASDLMQDFKTGY 488 (684)
Q Consensus 424 ~~~~~~~g~Tg~--~p~s~l~~isqli~G~~~---G~----------~p~~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~ 488 (684)
-.++++.|..+. +|.|+++++++++...++ |+ +|....++++.+++++.++.++.|++|||||||
T Consensus 366 Av~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~ 445 (624)
T COG1297 366 AVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGY 445 (624)
T ss_pred HHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCe
Confidence 889999998765 588999999988886554 52 134567889999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHHhHhHHHHHHHHHHhcCCCCC-C---CCCCCCchhHHhhhhhhhcccCCCCCChhhHHHHHH
Q 044922 489 LTLSSPRSMFLSQVIGTALGCFITPLVFWIFYKAYPLGD-P---EGSFPAPYGQLYRGIALLGVQGLGSLPKHCVELAIG 564 (684)
Q Consensus 489 y~~~pPR~~f~aQ~iG~ivg~~v~~~v~~ll~~~~~i~~-~---~~~~~aP~a~~~~s~av~g~~G~~~l~~~~~~~~~~ 564 (684)
++|.+||+||.+|++|+.+++++..+|+.++.++|++.. + ..+.++||+..+.+.+ .|+.+ +.+.|.+ .+.
T Consensus 446 LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia-~Gvf~-~~lew~m---i~~ 520 (624)
T COG1297 446 LVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAPPRQGMDLAAPQATLMATIA-KGVFT-GNLEWSM---ILA 520 (624)
T ss_pred eecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHh-cccCC-CCcchHH---HHH
Confidence 999999999999999999999999999999999999874 1 1248999999997775 24333 4455442 122
Q ss_pred HHHHHHHHHHHHHHHhccccccchhhcccccchhccccccchhhHHHHHHHHHHHHHHHhccc-------cccccchhhh
Q 044922 565 FFVAAIAINTIQEALLRRETKYMIYRFIPSPMCMAIPFYLGGYFAIDMCVGSLILFLWRMKNR-------TSADNFSPAV 637 (684)
Q Consensus 565 ~~ig~~~~~ll~~~~p~~~~~~~~~~~vp~p~~~~~~~~lp~~~~~~~~~G~~i~~~~~r~~~-------~~~~~y~~~l 637 (684)
....++.+-....+..+ +..|+-+++++++++.|+|++.++++++|++++|.++|+.+ +..++.++++
T Consensus 521 g~~~gi~lI~id~~l~~-----~~~~~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~ 595 (624)
T COG1297 521 GAGIGIVLIGIDERLKG-----RGGKLRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLF 595 (624)
T ss_pred HHhHhheeeeccHHHhc-----CCccccccceeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEE
Confidence 22222222223333222 33445555899999999999999999999999999988733 2345688999
Q ss_pred hhhhhhhhHhHHHHHHHHHhcC
Q 044922 638 ASGLICGDSLWGIPAAVLSLAG 659 (684)
Q Consensus 638 aaGLiaG~al~gvi~a~l~~~g 659 (684)
||||+.||+|+|++++.+...+
T Consensus 596 aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 596 AAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred eeccccchHHHHHHHHHHheec
Confidence 9999999999999999888764
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=94.32 E-value=4.5 Score=47.69 Aligned_cols=112 Identities=17% Similarity=0.367 Sum_probs=68.4
Q ss_pred ccCCcCchhhHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccCcceeeecc
Q 044922 185 KYKLTYPSGTATAYLINSFHTPKGAKLAVKQVAVLLKSFCVSFAWAFFQWFFAVADGCGFSSFPTFGLKAYKQKFYFDFS 264 (684)
Q Consensus 185 p~~l~fP~~lata~l~~alh~~~~~~~a~~~~~~f~~~~~~~f~~~~~~wi~p~~~~~~~~~~~g~Gl~~~~~~~~~Dws 264 (684)
..+++-|+....+++.+.+-+++. ..++..+.+++.+.++-..+.|+...- .|.
T Consensus 505 ~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~-------~P~--------------- 558 (624)
T PF03169_consen 505 SFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQRK-------FPS--------------- 558 (624)
T ss_pred cCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHhh-------CCh---------------
Confidence 456778889999999998865421 234455666677666665555443110 010
Q ss_pred ccccc----ccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCcccccchhhhHHHHHHHHHHHHHHHH
Q 044922 265 STYVG----VGMICPYMVNISLMIGAILSWGIMWPLIEKNKGSWYSADLPDSSLHGLQGYRVFIAIAMMLGDGFYHVIL 339 (684)
Q Consensus 265 ~~~~g----~gll~p~~~~~~~~~G~vl~~~ii~P~l~~~~n~w~~~~~p~~s~~~~~~y~~~~~~~~~~~~g~~~l~~ 339 (684)
+..++ .|+.+|......+++|.++.+++= .+...| +++|..-++.|+..+.++..+..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~-----~~~~~~------------~~~y~~~laagl~aG~~l~~li~ 620 (624)
T PF03169_consen 559 PLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWR-----RRYPKW------------WEKYNYVLAAGLIAGEALMGLII 620 (624)
T ss_pred hheeeecccccccchhHHHHHHHHHHHHHHHhh-----hcchhH------------HHhHhhHHHHHHHHHHHHHHHHH
Confidence 02233 677888889999999988876522 111122 33455556778888888777653
No 8
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=92.11 E-value=14 Score=43.23 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=80.8
Q ss_pred CChhhHHHHHHHHHHHhHhHHHHHHHHHHhcCCCCCCCCCCCCchhHHhhhhhhhcccCCCCCChhhHHHHHHHHHHHHH
Q 044922 492 SSPRSMFLSQVIGTALGCFITPLVFWIFYKAYPLGDPEGSFPAPYGQLYRGIALLGVQGLGSLPKHCVELAIGFFVAAIA 571 (684)
Q Consensus 492 ~pPR~~f~aQ~iG~ivg~~v~~~v~~ll~~~~~i~~~~~~~~aP~a~~~~s~av~g~~G~~~l~~~~~~~~~~~~ig~~~ 571 (684)
.|..++...=+.|.++|.+..+++.+.+..++++ .||-..|.+ ..-..|-.|.+ - .....+..++.+.++.
T Consensus 89 ~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L-----~fP~G~A~A--e~l~~g~~g~~-~-~~~~~l~~g~~~s~~~ 159 (591)
T TIGR00733 89 FPYWITTVICALGGSLGVLFTIPLRRAFVVESKL-----PYPEGVACA--EVLKAGDKARN-G-TGAKPIAYGGILASIY 159 (591)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CCCCHHHHH--HHHHccccccc-h-hhHHHHHHHHHHHHHH
Confidence 4556777777788999999988887655433222 344333322 11111323210 1 1223344444444432
Q ss_pred HHH-HHHHHhccc--------cccchhhcccccchhccccccchhhHHHHHHHHHHHHH-----HHhc--ccc-------
Q 044922 572 INT-IQEALLRRE--------TKYMIYRFIPSPMCMAIPFYLGGYFAIDMCVGSLILFL-----WRMK--NRT------- 628 (684)
Q Consensus 572 ~~l-l~~~~p~~~--------~~~~~~~~vp~p~~~~~~~~lp~~~~~~~~~G~~i~~~-----~~r~--~~~------- 628 (684)
-.+ .-+.+|... ..+.+.- =.+|..+|.|+..++..+..++.|++++|. ..++ .+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~~~~~~~ 238 (591)
T TIGR00733 160 AFLGSLRVWSGTLSAAKLVGRRALYFGS-DLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGDLSALDL 238 (591)
T ss_pred HHHHHhccCCchHHHHHhcCCcceEEEe-cccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHH
Confidence 211 011122100 0001111 135889999999999999999999999985 2221 111
Q ss_pred ---ccccchhhhhhhhhhhhHhHHHHHH
Q 044922 629 ---SADNFSPAVASGLICGDSLWGIPAA 653 (684)
Q Consensus 629 ---~~~~y~~~laaGLiaG~al~gvi~a 653 (684)
-|.+|---++.|.+.++++..++..
T Consensus 239 ~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 239 AWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 1222222268999999999988754
No 9
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=59.94 E-value=5.9 Score=22.57 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCC
Q 044922 9 RNPKAEEEGDDHD 21 (684)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (684)
|-+.|++|+||.+
T Consensus 2 RhrgH~~eeDed~ 14 (15)
T PF10529_consen 2 RHRGHREEEDEDD 14 (15)
T ss_pred ccCcccccccccc
Confidence 5566777777654
No 10
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=52.10 E-value=19 Score=24.57 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 044922 47 AMVTSLLLSIVFNFIVCK 64 (684)
Q Consensus 47 a~ilG~ll~~l~~~~n~~ 64 (684)
+|++|+.+++.++++|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 11
>PRK14749 hypothetical protein; Provisional
Probab=50.37 E-value=22 Score=24.03 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 044922 47 AMVTSLLLSIVFNFIVCK 64 (684)
Q Consensus 47 a~ilG~ll~~l~~~~n~~ 64 (684)
+|++|+++++.++.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999864
No 12
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=49.63 E-value=22 Score=23.87 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 044922 47 AMVTSLLLSIVFNFIVCK 64 (684)
Q Consensus 47 a~ilG~ll~~l~~~~n~~ 64 (684)
+|++|+++++.++++|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998863
No 13
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=42.90 E-value=32 Score=24.03 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 044922 47 AMVTSLLLSIVFNFIVCKL 65 (684)
Q Consensus 47 a~ilG~ll~~l~~~~n~~~ 65 (684)
+|++|+++++-++.+|..-
T Consensus 5 aWiLG~lLAcAFgiinAlw 23 (37)
T COG4890 5 AWILGLLLACAFGIINALW 23 (37)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998753
No 14
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=35.70 E-value=2.4e+02 Score=28.83 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=23.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhh
Q 044922 377 KDQIPNWAALLGYIFLAAISIVVVPIIFHQLKWYHILVAYVIAPVLAFC 425 (684)
Q Consensus 377 y~~vP~ww~~~~~~v~~~l~i~~~~~~~~~lp~~~~llai~l~~i~~~~ 425 (684)
+|.+++|...+ ++..+++ +++..+.++.+|+.++++++++++.+..
T Consensus 24 dp~l~~~ml~a-~l~~~~v--~v~ig~l~~~~~~~~i~gi~~g~l~am~ 69 (224)
T PF13829_consen 24 DPKLPWLMLGA-FLGPIAV--FVLIGLLFGSWWYWLIIGILLGLLAAMI 69 (224)
T ss_pred CcchHHHHHHH-HHHHHHH--HHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 45565554322 3322222 2233333355566777788877765543
No 15
>PF09490 CbtA: Probable cobalt transporter subunit (CbtA)
Probab=34.94 E-value=1.3e+02 Score=30.76 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCCCCccchhhhhcccCCCCCCCcch-HHHHHHHHHHHHHHHHHHHhhccccc
Q 044922 19 DHDGEKLVMEDAFKDVEVPSWRKQIT-FRAMVTSLLLSIVFNFIVCKLNLTTG 70 (684)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~lT-~Ra~ilG~ll~~l~~~~n~~~~lk~g 70 (684)
|||+++-.+++.++ +...| .=.++.|+.++ ++...-.++.-|.+
T Consensus 56 ~h~~~~~~~~~~~~-------R~~~~~~~~~l~g~a~g-l~~~~~~~~~gr~~ 100 (227)
T PF09490_consen 56 EHGEEAWEPEEGVQ-------RTGQTLLGNVLFGIAFG-LFALAFAFLRGRLG 100 (227)
T ss_pred Ccccccccccccch-------HHHHHHHHHHHHHHHHH-HHHHHHHHHhcccC
Confidence 44445455555553 22222 22445577777 66665555555543
No 16
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=33.45 E-value=57 Score=28.32 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCCCccchhhhhcccC-CCCCCCcchHHHHH-HHHHHHHHHHHHHHhhcccccccchhHH-HHHHHHHH
Q 044922 9 RNPKAEEEGDDHDGEKLVMEDAFKDVE-VPSWRKQITFRAMV-TSLLLSIVFNFIVCKLNLTTGVIPSLNV-AAGLLGFA 85 (684)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lT~Ra~i-lG~ll~~l~~~~n~~~~lk~g~~~~~si-~~~lls~~ 85 (684)
|+..+-+||.|.++++...+.+|.... ..+.-.++.|=+=+ +=+++.++++.+ ++.+| +.|..+. .+.++|+.
T Consensus 4 r~~~~~~ee~~~e~~~~~~yQe~q~~~~~~~kL~ELlFF~nIA~FcI~tvlfsFv--fLs~k--l~t~~Af~~Ai~~Sl~ 79 (90)
T PF11674_consen 4 RKLQDYEEEQEYEEQQTPKYQEYQPENQSSAKLKELLFFANIAFFCIFTVLFSFV--FLSLK--LNTFWAFPLAILISLA 79 (90)
T ss_pred chhhhhhhhhhHHHhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHh--hhHHHHHHHHHHHHHH
Confidence 444444445555555555565564222 22233466553222 222222333322 22333 3444444 46667777
Q ss_pred HHHHHHHh
Q 044922 86 IVKAWTSL 93 (684)
Q Consensus 86 ig~~~~~~ 93 (684)
+....++.
T Consensus 80 ~~~~~~~~ 87 (90)
T PF11674_consen 80 ITQLVRKF 87 (90)
T ss_pred HHHHHHHH
Confidence 77766554
No 17
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=29.67 E-value=88 Score=28.45 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 044922 43 ITFRAMVTSLLLSIVFNF 60 (684)
Q Consensus 43 lT~Ra~ilG~ll~~l~~~ 60 (684)
.-+|++.+++.|-++++.
T Consensus 39 ~pwK~I~la~~Lli~G~~ 56 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTV 56 (115)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 459999999887776655
No 18
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=27.01 E-value=2.5e+02 Score=33.48 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=34.6
Q ss_pred ccccccccccHHHHHHHH----HHHHHHHHHHHHHHhhccCCcCCCCCCCCCcccccchhhhHHHHHHHHHHHHHHH
Q 044922 266 TYVGVGMICPYMVNISLM----IGAILSWGIMWPLIEKNKGSWYSADLPDSSLHGLQGYRVFIAIAMMLGDGFYHVI 338 (684)
Q Consensus 266 ~~~g~gll~p~~~~~~~~----~G~vl~~~ii~P~l~~~~n~w~~~~~p~~s~~~~~~y~~~~~~~~~~~~g~~~l~ 338 (684)
..+|.++..|...+.+++ +|+++.++..- .+. .|. ..++|..-++.|+..+.++..+.
T Consensus 586 ~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~r----r~~-~~~----------~~~~y~~~laagL~~G~al~gvi 647 (654)
T TIGR00728 586 VAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRK----NKR-ADW----------KAEKYNYVLAAGLIAGEALAGVI 647 (654)
T ss_pred HhhhhhhccCCcchhhhhHHHHHHHHHHHHHHH----hhh-hhh----------hhhhhHHHHHHHHhhhHHHHHHH
Confidence 467778888888888988 66666554221 000 010 11345555677888888776654
No 19
>COG1297 Predicted membrane protein [Function unknown]
Probab=26.29 E-value=5e+02 Score=30.31 Aligned_cols=130 Identities=16% Similarity=0.124 Sum_probs=69.3
Q ss_pred hhhhhhhcCCChhhHHHHHHHHHHHhHhHHHHHHHHHHhcCCCCCCCCCCCCchhHHhhhhhhhcccCCCCCChhhHHHH
Q 044922 483 DFKTGYLTLSSPRSMFLSQVIGTALGCFITPLVFWIFYKAYPLGDPEGSFPAPYGQLYRGIALLGVQGLGSLPKHCVELA 562 (684)
Q Consensus 483 DlK~G~y~~~pPR~~f~aQ~iG~ivg~~v~~~v~~ll~~~~~i~~~~~~~~aP~a~~~~s~av~g~~G~~~l~~~~~~~~ 562 (684)
=++.||+-+-|=|.++..-.+|.++|.+..++..+.+ +. ++++|-|...+=...=+.|..- ++-+++...+.
T Consensus 94 l~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~-----Iv--~skLPyPeGvAaAEvL~~g~~~-~gd~~g~~~i~ 165 (624)
T COG1297 94 LLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAM-----IV--ESKLPYPEGVAAAEVLKAGNQR-EGDASGIKLIA 165 (624)
T ss_pred HHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeee-----ec--cCCCCCCCchhHHHHHHhcCCC-CCCcccchhhh
Confidence 3788888999999999999999999888877664322 21 2456666544332221123211 11112333333
Q ss_pred HHHHHHHHHHHHHH--HHHhc--------cccccchhhcccccchhccccccchhhHHHHHHHHHHHHH
Q 044922 563 IGFFVAAIAINTIQ--EALLR--------RETKYMIYRFIPSPMCMAIPFYLGGYFAIDMCVGSLILFL 621 (684)
Q Consensus 563 ~~~~ig~~~~~ll~--~~~p~--------~~~~~~~~~~vp~p~~~~~~~~lp~~~~~~~~~G~~i~~~ 621 (684)
+.+.+.+..-.+-. |..+. .+..-.+..++. +..++.|.++.....+++++|.+++|-
T Consensus 166 ~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~lg~~~S-~AliG~GylvGl~~~iaml~G~~iaWg 233 (624)
T COG1297 166 LGGALAALYSLLASGLRVIASSLSAAFSVGRAAFALGLGLS-LALIGAGYLVGLPAGIAMLIGIFIAWG 233 (624)
T ss_pred hhhHHHHHHHHHhccceeehhhHHHHHHhcchhhhhccccc-HHHhCceEEecchHHHHHHHHHHHHHH
Confidence 33333333211110 11100 000001222232 566677767777888999999999984
No 20
>PF10580 Neuromodulin_N: Gap junction protein N-terminal region; InterPro: IPR018947 Neuromodulin is a component of the motile growth cones. It is membrane protein whose expression is widely correlated with successful axon elongation []. It is a crucial component of an effective regeneration response in the nervous system []. Although its function is uncertain, the N-terminal region is well conserved and contains both a calmodulin binding domain, and sites for acylation, membrane attachment and protein kinase C phosphorylation. Structure predictions suggest that the C-terminal region may exist as an extended, negatively-charged rod with some similarity to the side arms of neurofilaments, indicating that the biological role of neuromodulin may depend on its ability to form a dynamic membrane-cytoplasm-calmodulin complex []. This entry represents the neuromodulin N-terminal domain.
Probab=25.28 E-value=26 Score=23.78 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCC-CCCCCccchhhh
Q 044922 6 SGDRNPKAEEEGD-DHDGEKLVMEDA 30 (684)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 30 (684)
+-++.|++.+|+| ++|.+.+-|||-
T Consensus 6 r~tk~VEKNeeadQkieqDg~KPEdk 31 (32)
T PF10580_consen 6 RRTKPVEKNEEADQKIEQDGIKPEDK 31 (32)
T ss_pred eccccccccchhhhhhhhcCCCcccc
Confidence 4567788888877 677777888863
No 21
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=25.11 E-value=93 Score=35.79 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCccchhhhh
Q 044922 4 KNSGDRNPKAEEEGDDHDGEKLVMEDAF 31 (684)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (684)
++.+++++++++..||++||+...|-+.
T Consensus 15 ~~~~~~~~~~~~v~~~~~d~~~L~~lgY 42 (550)
T KOG1289|consen 15 SDIGQLGVEESDVPEDDSDEELLAELGY 42 (550)
T ss_pred cccccCCcccccCccccCCHHHHHHcCC
Confidence 4455666666666666666666666555
Done!