Query 044922
Match_columns 684
No_of_seqs 149 out of 1297
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2i_B Krueppel-like factor 1; 8.9 1.6E+02 0.0053 20.4 1.7 26 5-30 4-29 (42)
2 2k1a_A Integrin alpha-IIB; sin 8.6 4.1E+02 0.014 18.7 3.8 13 377-389 5-17 (42)
3 3ukw_C Bimax1 peptide; arm rep 7.8 1.6E+02 0.0054 18.2 1.2 17 8-24 4-20 (28)
4 3mp7_B Preprotein translocase 7.8 4.2E+02 0.014 20.2 3.9 38 620-658 17-54 (61)
5 2knc_A Integrin alpha-IIB; tra 7.1 4.9E+02 0.017 19.3 3.9 13 377-389 7-19 (54)
6 1e0f_I Haemadin, factor IIA; c 6.3 3.2E+02 0.011 19.5 2.3 20 5-24 37-56 (57)
7 2jwa_A Receptor tyrosine-prote 6.0 4.1E+02 0.014 18.9 2.8 19 610-628 23-41 (44)
8 1rh5_B Preprotein translocase 5.1 5.1E+02 0.018 20.5 3.2 37 621-658 22-58 (74)
9 2f2b_A Aquaporin AQPM; protein 5.1 5E+02 0.017 25.2 4.0 19 498-516 104-122 (246)
10 3s0x_A Peptidase A24B, FLAK do 5.1 1.1E+03 0.037 22.8 6.3 21 377-397 28-48 (237)
No 1
>2l2i_B Krueppel-like factor 1; transcription factor TFIIH, erythroid kruppel-like factor EK activator, protein structure, mutation; NMR {Homo sapiens}
Probab=8.93 E-value=1.6e+02 Score=20.36 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhh
Q 044922 5 NSGDRNPKAEEEGDDHDGEKLVMEDA 30 (684)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (684)
|+-+..+..++||||-+.+.+---|.
T Consensus 4 hV~~eD~pgE~eDDERd~~~~WDlDL 29 (42)
T 2l2i_B 4 HVKSEDQPGEEEDDERGADATWDLDL 29 (42)
T ss_dssp -------CCSCCSSSSTTSSSSSSCC
T ss_pred eecccCCCCCccccccccccccChhh
Confidence 33444566667777766655443333
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=8.62 E-value=4.1e+02 Score=18.68 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=8.3
Q ss_pred cCCchHHHHHHHH
Q 044922 377 KDQIPNWAALLGY 389 (684)
Q Consensus 377 y~~vP~ww~~~~~ 389 (684)
+.++|.|.++...
T Consensus 5 ~~~vp~wiIi~s~ 17 (42)
T 2k1a_A 5 ERAIPIWWVLVGV 17 (42)
T ss_dssp CCCCCHHHHHHHH
T ss_pred cCCcchHHHHHHH
Confidence 3468888765543
No 3
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=7.75 E-value=1.6e+02 Score=18.16 Aligned_cols=17 Identities=29% Similarity=0.349 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCCCCCc
Q 044922 8 DRNPKAEEEGDDHDGEK 24 (684)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (684)
.|.+++++.+=|.|||.
T Consensus 4 rrrprkrplewdedeep 20 (28)
T 3ukw_C 4 RRRPRKRPLEWDEDEEP 20 (28)
T ss_dssp ---CCCCCCCCCGGGSC
T ss_pred ccccccCCcccccccCc
Confidence 45677777665544443
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=7.75 E-value=4.2e+02 Score=20.16 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=25.4
Q ss_pred HHHHhccccccccchhhhhhhhhhhhHhHHHHHHHHHhc
Q 044922 620 FLWRMKNRTSADNFSPAVASGLICGDSLWGIPAAVLSLA 658 (684)
Q Consensus 620 ~~~~r~~~~~~~~y~~~laaGLiaG~al~gvi~a~l~~~ 658 (684)
.+++|-+++.+++|.- ++-.-..|-.++|++-++.++.
T Consensus 17 rvlk~~~KPd~~Ef~~-iak~~~iG~~i~G~iGf~Ikli 54 (61)
T 3mp7_B 17 RAFLVTKKPNWATYKR-AAKITGLGIILIGLIGMLIRIV 54 (61)
T ss_dssp HHHHHSCCCCTTHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777888864 3444456778888888776654
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.08 E-value=4.9e+02 Score=19.34 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=8.1
Q ss_pred cCCchHHHHHHHH
Q 044922 377 KDQIPNWAALLGY 389 (684)
Q Consensus 377 y~~vP~ww~~~~~ 389 (684)
..++|.|.++...
T Consensus 7 ~~~vp~wiIi~sv 19 (54)
T 2knc_A 7 ERAIPIWWVLVGV 19 (54)
T ss_dssp TTTCCHHHHHHHH
T ss_pred CCCcchHHHHHHH
Confidence 3468888765543
No 6
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=6.33 E-value=3.2e+02 Score=19.49 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q 044922 5 NSGDRNPKAEEEGDDHDGEK 24 (684)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (684)
-+|+-.++.+-|+-|++||+
T Consensus 37 csgdpkpssefeefeideee 56 (57)
T 1e0f_I 37 CSGDPKPSSEFEEFEIDEEE 56 (57)
T ss_dssp BCSCCCCCCCSCCCCCCCCC
T ss_pred ccCCCCcccccceeeccccc
Confidence 45677777776666777665
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.01 E-value=4.1e+02 Score=18.91 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 044922 610 IDMCVGSLILFLWRMKNRT 628 (684)
Q Consensus 610 ~~~~~G~~i~~~~~r~~~~ 628 (684)
+.+.++..+..|+|||+.+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 3455566667778877654
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=5.12 E-value=5.1e+02 Score=20.49 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=24.7
Q ss_pred HHHhccccccccchhhhhhhhhhhhHhHHHHHHHHHhc
Q 044922 621 LWRMKNRTSADNFSPAVASGLICGDSLWGIPAAVLSLA 658 (684)
Q Consensus 621 ~~~r~~~~~~~~y~~~laaGLiaG~al~gvi~a~l~~~ 658 (684)
++++-++..+++|.- ++-.-..|..++|++-++.++.
T Consensus 22 vlk~~~KPdr~EF~~-iak~~~iG~~imG~IGfiIkli 58 (74)
T 1rh5_B 22 VWLVLKKPTKDEYLA-VAKVTALGISLLGIIGYIIHVP 58 (74)
T ss_dssp HHHSEECCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456656667788854 3444456778888888776654
No 9
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=5.10 E-value=5e+02 Score=25.22 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhHhHHHHHH
Q 044922 498 FLSQVIGTALGCFITPLVF 516 (684)
Q Consensus 498 f~aQ~iG~ivg~~v~~~v~ 516 (684)
..+|++|.++|+.+...++
T Consensus 104 i~AQ~lGa~~ga~l~~~~~ 122 (246)
T 2f2b_A 104 IIAQLLGAAFGSFIFLQCA 122 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 6799999999998877665
No 10
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=5.06 E-value=1.1e+03 Score=22.82 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=12.6
Q ss_pred cCCchHHHHHHHHHHHHHHHH
Q 044922 377 KDQIPNWAALLGYIFLAAISI 397 (684)
Q Consensus 377 y~~vP~ww~~~~~~v~~~l~i 397 (684)
++++|+|.+...++.+.++..
T Consensus 28 ~R~IpN~l~~~ll~~gi~l~~ 48 (237)
T 3s0x_A 28 SREIEDYIWIFLAVFGVLFAI 48 (237)
T ss_dssp --CTHHHHHHHHHHHHHHHHH
T ss_pred hcEeCchhHHHHHHHHHHHHH
Confidence 457999987776655544443
Done!