Query 044922
Match_columns 684
No_of_seqs 149 out of 1297
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 14:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044922.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044922hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 6.9 1.7E+02 0.012 17.5 2.6 17 639-655 2-18 (34)
2 d1e0fi_ g.3.15.2 (I:) Haemadin 6.3 1.5E+02 0.011 19.5 2.3 20 5-24 37-56 (57)
3 d1ymga1 f.19.1.1 (A:6-239) Aqu 4.7 2E+02 0.015 25.4 3.1 18 498-515 85-102 (234)
4 d1fx8a_ f.19.1.1 (A:) Glycerol 4.6 2.8E+02 0.021 24.6 4.2 20 498-517 85-104 (254)
5 d1q90l_ f.23.24.1 (L:) PetL su 4.1 2.9E+02 0.021 16.1 2.3 24 43-67 2-25 (32)
6 d1otsa_ f.20.1.1 (A:) Clc chlo 3.5 7.4E+02 0.054 23.4 6.8 49 597-646 122-171 (444)
7 d1zava1 d.58.62.1 (A:1-177) Ri 3.4 3.6E+02 0.026 22.4 3.5 29 485-513 127-155 (177)
8 d1rh5b_ f.23.28.1 (B:) Preprot 3.2 4E+02 0.029 18.2 2.9 35 621-656 11-45 (56)
9 d2cs7a1 d.9.2.1 (A:0-54) Pneum 3.1 65 0.0047 22.4 -1.6 15 669-683 41-55 (55)
10 d1gvda_ a.4.1.3 (A:) c-Myb, DN 3.0 2.1E+02 0.016 18.9 1.2 19 99-117 1-19 (52)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.89 E-value=1.7e+02 Score=17.48 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=12.0
Q ss_pred hhhhhhhHhHHHHHHHH
Q 044922 639 SGLICGDSLWGIPAAVL 655 (684)
Q Consensus 639 aGLiaG~al~gvi~a~l 655 (684)
|++++|.++..+.+.++
T Consensus 2 a~fiagta~tmig~tl~ 18 (34)
T d1q90m_ 2 AEFIAGTALTMVGMTLV 18 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHHHH
Confidence 67888888876655543
No 2
>d1e0fi_ g.3.15.2 (I:) Haemadin {Indian leech (Haemadipsa sylvestris) [TaxId: 13555]}
Probab=6.33 E-value=1.5e+02 Score=19.49 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q 044922 5 NSGDRNPKAEEEGDDHDGEK 24 (684)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (684)
-+|+-.++.+-|+-|++||+
T Consensus 37 csgdpkpssefeefeideee 56 (57)
T d1e0fi_ 37 CSGDPKPSSEFEEFEIDEEE 56 (57)
T ss_dssp BCSCCCCCCCSCCCCCCCCC
T ss_pred ccCCCCcccccceeeccccc
Confidence 45677777776666777665
No 3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.68 E-value=2e+02 Score=25.36 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHhHHHHH
Q 044922 498 FLSQVIGTALGCFITPLV 515 (684)
Q Consensus 498 f~aQ~iG~ivg~~v~~~v 515 (684)
..+|++|.++|+.+...+
T Consensus 85 i~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 85 MVAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 479999999998876654
No 4
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=4.58 E-value=2.8e+02 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhHhHHHHHHH
Q 044922 498 FLSQVIGTALGCFITPLVFW 517 (684)
Q Consensus 498 f~aQ~iG~ivg~~v~~~v~~ 517 (684)
..+|++|.++|+.+...++.
T Consensus 85 i~aQ~lGa~~ga~l~~~~~~ 104 (254)
T d1fx8a_ 85 IVSQVAGAFCAAALVYGLYY 104 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999988863
No 5
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.10 E-value=2.9e+02 Score=16.13 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhcc
Q 044922 43 ITFRAMVTSLLLSIVFNFIVCKLNL 67 (684)
Q Consensus 43 lT~Ra~ilG~ll~~l~~~~n~~~~l 67 (684)
+|+-++ +|.+.++++-....|+|+
T Consensus 2 lti~sy-vglligal~~tlgiylgl 25 (32)
T d1q90l_ 2 LTITSY-VGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eehHHH-HHHHHHHHHHHHHHHHHH
Confidence 344444 478888888888888876
No 6
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=3.53 E-value=7.4e+02 Score=23.42 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=21.7
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHhc-cccccccchhhhhhhhhhhhH
Q 044922 597 CMAIPFYLGGYFAIDMCVGSLILFLWRMK-NRTSADNFSPAVASGLICGDS 646 (684)
Q Consensus 597 ~~~~~~~lp~~~~~~~~~G~~i~~~~~r~-~~~~~~~y~~~laaGLiaG~a 646 (684)
.++.|..+.+.-+. +-+|+.++..+.|+ +.+..++.-..+++|.-||.+
T Consensus 122 sl~~G~s~G~EGP~-v~iga~i~~~l~~~~~~~~~~~~r~l~~~GaaAgla 171 (444)
T d1otsa_ 122 TLGGGMVLGREGPT-VQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLA 171 (444)
T ss_dssp HHHTTCSCBSHHHH-HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccccccH-HHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHh
Confidence 34444444444333 34555555444443 322222223456666555443
No 7
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.37 E-value=3.6e+02 Score=22.45 Aligned_cols=29 Identities=3% Similarity=0.068 Sum_probs=23.3
Q ss_pred hhhhhcCCChhhHHHHHHHHHHHhHhHHH
Q 044922 485 KTGYLTLSSPRSMFLSQVIGTALGCFITP 513 (684)
Q Consensus 485 K~G~y~~~pPR~~f~aQ~iG~ivg~~v~~ 513 (684)
++-.+.+.|.|...++|++|.+-+..-..
T Consensus 127 ~i~~la~LPs~eel~a~l~~~L~ap~~~l 155 (177)
T d1zava1 127 EVENIAKLPSKEELYAMLVGRVKAPITGL 155 (177)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhHHHHH
Confidence 34467899999999999999988765544
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.23 E-value=4e+02 Score=18.17 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=19.8
Q ss_pred HHHhccccccccchhhhhhhhhhhhHhHHHHHHHHH
Q 044922 621 LWRMKNRTSADNFSPAVASGLICGDSLWGIPAAVLS 656 (684)
Q Consensus 621 ~~~r~~~~~~~~y~~~laaGLiaG~al~gvi~a~l~ 656 (684)
++++-+++.+++|-- +|-.--.|-.++|++-++..
T Consensus 11 vlk~~~KP~~~Ef~~-ia~v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 11 VWLVLKKPTKDEYLA-VAKVTALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHSEECCCHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 355555666777643 23333456667777766544
No 9
>d2cs7a1 d.9.2.1 (A:0-54) Pneumococcal histidine triad protein A, PhtA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=3.06 E-value=65 Score=22.42 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=8.5
Q ss_pred ccccccccccccccC
Q 044922 669 LSASANNKVDGYLVG 683 (684)
Q Consensus 669 ~~~~~~~~~~~~~~~ 683 (684)
||++|..+++.||+|
T Consensus 41 Ls~~e~~~A~~~l~g 55 (55)
T d2cs7a1 41 LSASELAAAEAFLSG 55 (55)
T ss_dssp SCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhcC
Confidence 555555555555554
No 10
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.99 E-value=2.1e+02 Score=18.92 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=12.8
Q ss_pred CCCCCCCcchhhhhhhhhh
Q 044922 99 VLKQPFTRQENTVIQTCVV 117 (684)
Q Consensus 99 lnpgpfs~kE~~iiqt~as 117 (684)
|+.||||..|-....-...
T Consensus 1 l~rg~WT~eED~~L~~~v~ 19 (52)
T d1gvda_ 1 LIKGPWTKEEDQRLIKLVQ 19 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 3578888888776655433
Done!