BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044924
(740 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 172/606 (28%), Positives = 265/606 (43%), Gaps = 84/606 (13%)
Query: 76 QGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFXXXXXXXXQGFPHFK 135
G+ L SL LSR + L S+GS L L + N G
Sbjct: 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV--SGGLKLN 151
Query: 136 SLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQEL 195
SLE L++ I+ ++ + LK+L++S G +D C ++++ L
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNLEFL 205
Query: 196 HIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPI 255
++ N+ +P+ L + ++L+ LD+S N+L+G S + + T ++ L +S N F PI
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI 263
Query: 256 SLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNF------QLSHLSLSFGYGDGVTFPK 309
PL LQ N+ EI P+F L+ L LS + G P
Sbjct: 264 PPLPL---KSLQYLSLAENKFTGEI-------PDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 310 F------------------------LYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETL 345
F L L +DLS + +G P L + L TL
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 346 SLVNDSLAGPF--RLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNG 403
L +++ +GP L + L+ L + NN F G IP + + L+S ++S N L+G
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSG 432
Query: 404 SIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTN 463
+IPSS G+++ L+ L L N L GEIP+ L LE L L N+L G + + N TN
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 464 LRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLE 523
L W+ L +N GEIP+ + + +L L L+NNS SG IP LG+ + L + + N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 524 GPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIE-QVHLSKNMLRGQLKRG------ 576
G IP + Q I+ N I+G ++ + H + N+L Q R
Sbjct: 552 GTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 577 -------------------TFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNN 617
TF N S++ LD+SYN L+G IP + + L L LGHN+
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 618 LEGEVP 623
+ G +P
Sbjct: 668 ISGSIP 673
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 174/344 (50%), Gaps = 18/344 (5%)
Query: 320 VDLSHIKMNGG-FPNWLLENNT-RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQ 377
+DLS ++G W+L + L+ L++ + ++G + + L LDVS+NNF
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFS 213
Query: 378 GHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGC 437
IP +GD +L +IS N L+G + L++L++S+NQ +G IP +
Sbjct: 214 TGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP---PLPL 268
Query: 438 VNLEYLTLSNNNLEGHM--FTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNN 495
+L+YL+L+ N G + F T L L L NHF G +P CS LE L L++
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 496 NSLSGKIP-RWLGNLKGLKHIIMPENHLEGPIPMEFCQL-YSLQLLDISDNNISGS-LPS 552
N+ SG++P L ++GLK + + N G +P L SL LD+S NN SG LP+
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 553 CFH--LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRH 610
++++++L N G++ T NCS LV+L LS+N L+G+IP+ + LS+LR
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 611 LILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGHIPPCFDNTT 654
L L N LEGE+P G IP N T
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 162/590 (27%), Positives = 247/590 (41%), Gaps = 91/590 (15%)
Query: 56 LSNLEELDMSGNEIDNFQVPQGY---GGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNT 112
L++LE LD+S N I V G+ G +LK L +S I + R + +L
Sbjct: 150 LNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVDVSRCV----NLEF 204
Query: 113 LYLWGNNFXXXXXXXXQGFPHF---KSLEHLEMDDARIA---------------LNTSFL 154
L + NNF G P +L+HL++ +++ LN S
Sbjct: 205 LDVSSNNFS-------TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 155 QIIGELMP----SLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAH----------- 199
Q +G + P SL+YLSL+ + T I G C + +L H
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 200 -----------NDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLS 247
N+ G LP L M L++LD+S N+ +G + S S+ L LS
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 248 DNHFRIPISLEPLFNHSRLQIFDAY--NNEINAEITQSPSLTPNFQLSHLSLSFGYGDGV 305
N+F PI L L + + + + Y NN +I P+L+ +L L LSF Y G
Sbjct: 377 SNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSNCSELVSLHLSFNYLSG- 432
Query: 306 TFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQ 365
T P L L ++ L + G P L+ T LETL L + L G + +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTN 491
Query: 366 LRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQL 425
L + +SNN G IP IG L +L +S N+ +G+IP+ G+ SL LDL+ N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 426 IGEIPEHL--------AVGCVNLEYLTLSNNNL--EGHMFTRNFNLTNLRWLQL------ 469
G IP + A Y+ + N+ + E H +R QL
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 470 -----ESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEG 524
S + G + S+ L ++ N LSG IP+ +G++ L + + N + G
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 525 PIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLS-IEQVHLSKNMLRGQL 573
IP E L L +LD+S N + G +P L+ + ++ LS N L G +
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 123/266 (46%), Gaps = 21/266 (7%)
Query: 184 QGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEE 243
Q L + ++ L + NDL G +P L+N T+L + +S+N+LTG I + L ++
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAI 518
Query: 244 LRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEI-----TQSPSLTPNFQLSHLSLS 298
L+LS+N F I E L + L D N N I QS + NF +
Sbjct: 519 LKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 299 F----------GYGDGVTFPKFLYHQ-HDLVNVDLSHI--KMNGGFPNWLLENNTRLETL 345
G G+ + F Q + L + +I ++ GG + +NN + L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 346 SLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSI 405
+ + L+G I S L +L++ +N+ G IP E+GD L L ++S N L+G I
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRI 696
Query: 406 PSSFGNINSLQILDLSNNQLIGEIPE 431
P + + L +DLSNN L G IPE
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 114/458 (24%), Positives = 184/458 (40%), Gaps = 81/458 (17%)
Query: 1 LETLSRLTNLKMLDLRGNLFNNXX-XXXXXXXXXXXXXXXXENKLEGSI--NVKEFDSLS 57
++TL ++ LK+LDL N F+ N G I N+ + + +
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKN 394
Query: 58 NLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWG 117
L+EL + N ++P +L SLHLS + + S+GS L L LW
Sbjct: 395 TLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWL 451
Query: 118 NNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPGTN 177
N Q + K+LE L +D F + GE+ PS
Sbjct: 452 N---MLEGEIPQELMYVKTLETLILD---------FNDLTGEI-PS-------------- 484
Query: 178 SIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIH 237
GL + ++ + +++N L G +P + + +L IL +S+N +G+I + L
Sbjct: 485 -------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGD 536
Query: 238 LTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSL 297
S+ L L+ N F I A QS + NF
Sbjct: 537 CRSLIWLDLNTNLFNGTIPA--------------------AMFKQSGKIAANF------- 569
Query: 298 SFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLET---LSLVNDSLAG 354
+ +++Y ++D + + F E RL T ++ + G
Sbjct: 570 -------IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 355 PFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS 414
++ + LD+S N G+IP EIG +P L N+ N ++GSIP G++
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 415 LQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEG 452
L ILDLS+N+L G IP+ ++ L + LSNNNL G
Sbjct: 682 LNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSG 718
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 172/606 (28%), Positives = 265/606 (43%), Gaps = 84/606 (13%)
Query: 76 QGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFXXXXXXXXQGFPHFK 135
G+ L SL LSR + L S+GS L L + N G
Sbjct: 91 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV--SGGLKLN 148
Query: 136 SLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQEL 195
SLE L++ I+ ++ + LK+L++S G +D C ++++ L
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNLEFL 202
Query: 196 HIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPI 255
++ N+ +P+ L + ++L+ LD+S N+L+G S + + T ++ L +S N F PI
Sbjct: 203 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI 260
Query: 256 SLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNF------QLSHLSLSFGYGDGVTFPK 309
PL LQ N+ EI P+F L+ L LS + G P
Sbjct: 261 PPLPL---KSLQYLSLAENKFTGEI-------PDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 310 F------------------------LYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETL 345
F L L +DLS + +G P L + L TL
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 346 SLVNDSLAGPF--RLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNG 403
L +++ +GP L + L+ L + NN F G IP + + L+S ++S N L+G
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSG 429
Query: 404 SIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTN 463
+IPSS G+++ L+ L L N L GEIP+ L LE L L N+L G + + N TN
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 464 LRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLE 523
L W+ L +N GEIP+ + + +L L L+NNS SG IP LG+ + L + + N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 524 GPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIE-QVHLSKNMLRGQLKRG------ 576
G IP + Q I+ N I+G ++ + H + N+L Q R
Sbjct: 549 GTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 577 -------------------TFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNN 617
TF N S++ LD+SYN L+G IP + + L L LGHN+
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 618 LEGEVP 623
+ G +P
Sbjct: 665 ISGSIP 670
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 174/344 (50%), Gaps = 18/344 (5%)
Query: 320 VDLSHIKMNGG-FPNWLLENNT-RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQ 377
+DLS ++G W+L + L+ L++ + ++G + + L LDVS+NNF
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFS 210
Query: 378 GHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGC 437
IP +GD +L +IS N L+G + L++L++S+NQ +G IP +
Sbjct: 211 TGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP---PLPL 265
Query: 438 VNLEYLTLSNNNLEGHM--FTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNN 495
+L+YL+L+ N G + F T L L L NHF G +P CS LE L L++
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 496 NSLSGKIP-RWLGNLKGLKHIIMPENHLEGPIPMEFCQL-YSLQLLDISDNNISGS-LPS 552
N+ SG++P L ++GLK + + N G +P L SL LD+S NN SG LP+
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 553 CFH--LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRH 610
++++++L N G++ T NCS LV+L LS+N L+G+IP+ + LS+LR
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 611 LILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGHIPPCFDNTT 654
L L N LEGE+P G IP N T
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 162/590 (27%), Positives = 246/590 (41%), Gaps = 91/590 (15%)
Query: 56 LSNLEELDMSGNEIDNFQVPQGY---GGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNT 112
L++LE LD+S N I V G+ G +LK L +S I + R + +L
Sbjct: 147 LNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVDVSRCV----NLEF 201
Query: 113 LYLWGNNFXXXXXXXXQGFPHF---KSLEHLEMDDARIA---------------LNTSFL 154
L + NNF G P +L+HL++ +++ LN S
Sbjct: 202 LDVSSNNFS-------TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 155 QIIGELMP----SLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAH----------- 199
Q +G + P SL+YLSL+ T I G C + +L H
Sbjct: 255 QFVGPIPPLPLKSLQYLSLA-ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 200 -----------NDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLS 247
N+ G LP L M L++LD+S N+ +G + S S+ L LS
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 248 DNHFRIPISLEPLFNHSRLQIFDAY--NNEINAEITQSPSLTPNFQLSHLSLSFGYGDGV 305
N+F PI L L + + + + Y NN +I P+L+ +L L LSF Y G
Sbjct: 374 SNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSNCSELVSLHLSFNYLSG- 429
Query: 306 TFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQ 365
T P L L ++ L + G P L+ T LETL L + L G + +
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTN 488
Query: 366 LRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQL 425
L + +SNN G IP IG L +L +S N+ +G+IP+ G+ SL LDL+ N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 426 IGEIPEHL--------AVGCVNLEYLTLSNNNL--EGHMFTRNFNLTNLRWLQL------ 469
G IP + A Y+ + N+ + E H +R QL
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 470 -----ESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEG 524
S + G + S+ L ++ N LSG IP+ +G++ L + + N + G
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 525 PIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLS-IEQVHLSKNMLRGQL 573
IP E L L +LD+S N + G +P L+ + ++ LS N L G +
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 123/266 (46%), Gaps = 21/266 (7%)
Query: 184 QGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEE 243
Q L + ++ L + NDL G +P L+N T+L + +S+N+LTG I + L ++
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAI 515
Query: 244 LRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEI-----TQSPSLTPNFQLSHLSLS 298
L+LS+N F I E L + L D N N I QS + NF +
Sbjct: 516 LKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 299 F----------GYGDGVTFPKFLYHQ-HDLVNVDLSHI--KMNGGFPNWLLENNTRLETL 345
G G+ + F Q + L + +I ++ GG + +NN + L
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 346 SLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSI 405
+ + L+G I S L +L++ +N+ G IP E+GD L L ++S N L+G I
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRI 693
Query: 406 PSSFGNINSLQILDLSNNQLIGEIPE 431
P + + L +DLSNN L G IPE
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 114/458 (24%), Positives = 184/458 (40%), Gaps = 81/458 (17%)
Query: 1 LETLSRLTNLKMLDLRGNLFNNXX-XXXXXXXXXXXXXXXXENKLEGSI--NVKEFDSLS 57
++TL ++ LK+LDL N F+ N G I N+ + + +
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKN 391
Query: 58 NLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWG 117
L+EL + N ++P +L SLHLS + + S+GS L L LW
Sbjct: 392 TLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWL 448
Query: 118 NNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPGTN 177
N Q + K+LE L +D F + GE+ PS
Sbjct: 449 N---MLEGEIPQELMYVKTLETLILD---------FNDLTGEI-PS-------------- 481
Query: 178 SIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIH 237
GL + ++ + +++N L G +P + + +L IL +S+N +G+I + L
Sbjct: 482 -------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGD 533
Query: 238 LTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSL 297
S+ L L+ N F I A QS + NF
Sbjct: 534 CRSLIWLDLNTNLFNGTIPA--------------------AMFKQSGKIAANF------- 566
Query: 298 SFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLET---LSLVNDSLAG 354
+ +++Y ++D + + F E RL T ++ + G
Sbjct: 567 -------IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 355 PFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS 414
++ + LD+S N G+IP EIG +P L N+ N ++GSIP G++
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 415 LQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEG 452
L ILDLS+N+L G IP+ ++ L + LSNNNL G
Sbjct: 679 LNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSG 715
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 49/243 (20%)
Query: 405 IPSSFGNINSLQILDLSN-NQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTN 463
IPSS N+ L L + N L+G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 464 LRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLE 523
L +L + + G IP LS+ +L L + N+LSG +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 524 GPIPMEFCQLYSL-QLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQ---------- 572
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 573 ------LKRGTFFN------CSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG 620
K F+ +L LDL NR+ G++P + L L L + NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 621 EVP 623
E+P
Sbjct: 283 EIP 285
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 322 LSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIP 381
++H ++G P++L + T L TL ++L+G I S L + N G IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 382 VEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLE 441
G S IS N L G IP +F N+N L +DLS N L G+ L N +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSDKNTQ 224
Query: 442 YLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK 501
+ L+ N+L + + NL L L +N G +PQ L++ L L ++ N+L G+
Sbjct: 225 KIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 502 IPRWLGNLKGLKHIIMPENHLEGPIPMEFC 531
IP+ GNL+ N P+ C
Sbjct: 284 IPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 118/275 (42%), Gaps = 43/275 (15%)
Query: 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILD 220
+ +L YL+ Y N + + + L + L+I H ++ G++P L+ + +L LD
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 221 VSSNQLTG----SISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEI 276
S N L+G SISS P + + + R+S IP S S ++F +
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISG---AIPDSY-----GSFSKLFTSMTISR 183
Query: 277 NAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLL 336
N + P P F ++L+L+F VDLS M G + L
Sbjct: 184 NRLTGKIP---PTF--ANLNLAF--------------------VDLSR-NMLEGDASVLF 217
Query: 337 ENNTRLETLSLVNDSLAGPFRL-PIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFN 395
++ + + L +SLA F L + K L LD+ NN G +P + L L S N
Sbjct: 218 GSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLN 274
Query: 396 ISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIP 430
+S N L G IP GN+ + +NN+ + P
Sbjct: 275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 42/242 (17%)
Query: 42 NKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRD-GSKL 100
N L G I+ F L+ LE+LD+S N P + GL L +LHL R G+++ G L
Sbjct: 65 NALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 101 LRSMGSFPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL 160
R + +L LYL NN L+ L + R N + L + G
Sbjct: 124 FRGLA---ALQYLYLQDNN-----------------LQALPDNTFRDLGNLTHLFLHGNR 163
Query: 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILD 220
+PS+ ++ G +S++ L L+H + H P ++ L L
Sbjct: 164 IPSVP----EHAFRGLHSLDRL------LLHQNHVARVH-------PHAFRDLGRLMTLY 206
Query: 221 VSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEI 280
+ +N L+ + + L+ L S++ LRL+DN + PL+ + LQ F ++E+ +
Sbjct: 207 LFANNLS-MLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCNL 263
Query: 281 TQ 282
Q
Sbjct: 264 PQ 265
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Query: 399 NALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLE--GHMFT 456
NAL G ++F + L+ LDLS+N + + G +L L L L+ G
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 457 RNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHII 516
R L L++L L+ N+ + +L L+L+ N + L L ++
Sbjct: 125 RG--LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLL 182
Query: 517 MPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547
+ +NH+ P F L L L + NN+S
Sbjct: 183 LHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 486 SSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN- 544
+S + ++L+ N +S + + L + + N L G F L L+ LD+SDN
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 545 NISGSLPSCFHLLS-IEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVD 603
+ P+ F L + +HL + L+ +L G F ++L L L N L N
Sbjct: 91 QLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 604 GLSQLRHLILGHNNLEGEVP 623
L L HL L H N VP
Sbjct: 150 DLGNLTHLFL-HGNRIPSVP 168
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
L +L N S N L P N+ L + ++NNQ+ P NL LTL N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 448 NNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507
N + +N LTNL L+L SN + +I +LS +SL+ L ++N ++ P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 508 NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567
NL L+ + + N + I + +L +L+ L ++N IS P L +++++ L+ N
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGN 227
Query: 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624
L+ GT + ++L LDL+ N+++ P + GL++L L LG N + P+
Sbjct: 228 QLK---DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 24/111 (21%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLT----------------- 227
L L +Q+L + N + P LAN+T+L LD+SSN+++
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 228 -GSISS-SPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEI 276
IS +PL LT+++EL L+ N + +L L N + L D NN+I
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL---DLANNQI 251
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 86/366 (23%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEEL 244
G+ L ++ +++ ++N L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 245 RLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDG 304
L +N ++PL N + L + +N I ++I+ LT L LS S +
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLT---SLQQLSFS---SNQ 162
Query: 305 VTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHK 364
VT K L + L +D+S K++ +L T LE+L
Sbjct: 163 VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESL------------------- 200
Query: 365 QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS---LQILDLS 421
++ NN +I DI P I N+ +LNG+ G + S L LDL+
Sbjct: 201 ------IATNN-------QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
Query: 422 NNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQS 481
NNQ+ P L G LT L L+L +N P
Sbjct: 248 NNQISNLAP-------------------LSG--------LTKLTELKLGANQISNISP-- 278
Query: 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDI 541
L+ ++L L LN N L P + NLK L ++ + N++ P+ L LQ L
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 334
Query: 542 SDNNIS 547
S+N +S
Sbjct: 335 SNNKVS 340
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 54/205 (26%)
Query: 49 NVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFP 108
++ SL+NL +LD++ N+I N P GL KL L L I + S L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISPL-------- 279
Query: 109 SLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL--MPSLKY 166
G +LE LN + L+ I + + +L Y
Sbjct: 280 --------------------AGLTALTNLE----------LNENQLEDISPISNLKNLTY 309
Query: 167 LSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL 226
L+L + N+I + + SL +Q L ++N + S LAN+T++ L NQ+
Sbjct: 310 LTLYF-----NNISDI-SPVSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQI 361
Query: 227 TGSISSSPLIHLTSIEELRLSDNHF 251
+ +PL +LT I +L L+D +
Sbjct: 362 S---DLTPLANLTRITQLGLNDQAW 383
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
L +L N S N L P N+ L + ++NNQ+ P NL LTL N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 448 NNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507
N + +N LTNL L+L SN + +I +LS +SL+ L ++N ++ P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 508 NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567
NL L+ + + N + I + +L +L+ L ++N IS P L +++++ L+ N
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGN 227
Query: 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624
L+ GT + ++L LDL+ N+++ P + GL++L L LG N + P+
Sbjct: 228 QLK---DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 24/111 (21%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLT----------------- 227
L L +Q+L + N + P LAN+T+L LD+SSN+++
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 228 -GSISS-SPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEI 276
IS +PL LT+++EL L+ N + +L L N + L D NN+I
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL---DLANNQI 251
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 152/366 (41%), Gaps = 86/366 (23%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEEL 244
G+ L ++ +++ ++N L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 245 RLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDG 304
L +N ++PL N + L + +N I ++I+ LT L LS S +
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLT---SLQQLSFS---SNQ 162
Query: 305 VTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHK 364
VT K L + L +D+S K++ +L T LE+L
Sbjct: 163 VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESL------------------- 200
Query: 365 QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS---LQILDLS 421
++ NN +I DI P I N+ +LNG+ G + S L LDL+
Sbjct: 201 ------IATNN-------QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
Query: 422 NNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQS 481
NNQ+ P L G LT L L+L +N P
Sbjct: 248 NNQISNLAP-------------------LSG--------LTKLTELKLGANQISNISP-- 278
Query: 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDI 541
L+ ++L L LN N L P + NLK L ++ + N++ P+ L LQ L
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 334
Query: 542 SDNNIS 547
+N +S
Sbjct: 335 YNNKVS 340
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 54/205 (26%)
Query: 49 NVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFP 108
++ SL+NL +LD++ N+I N P GL KL L L I + S L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISPL-------- 279
Query: 109 SLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL--MPSLKY 166
G +LE LN + L+ I + + +L Y
Sbjct: 280 --------------------AGLTALTNLE----------LNENQLEDISPISNLKNLTY 309
Query: 167 LSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL 226
L+L + N+I + + SL +Q L +N + S LAN+T++ L NQ+
Sbjct: 310 LTLYF-----NNISDI-SPVSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQI 361
Query: 227 TGSISSSPLIHLTSIEELRLSDNHF 251
+ +PL +LT I +L L+D +
Sbjct: 362 S---DLTPLANLTRITQLGLNDQAW 383
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
L +L N S N L P N+ L + ++NNQ+ P NL LTL N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 448 NNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507
N + +N LTNL L+L SN + +I +LS +SL+ L ++N ++ P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LA 170
Query: 508 NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567
NL L+ + + N + I + +L +L+ L ++N IS P L +++++ L+ N
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGN 227
Query: 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624
L+ GT + ++L LDL+ N+++ P + GL++L L LG N + P+
Sbjct: 228 QLK---DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 24/111 (21%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLT----------------- 227
L L +Q+L+ + N + P LAN+T+L LD+SSN+++
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 228 -GSISS-SPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEI 276
IS +PL LT+++EL L+ N + +L L N + L D NN+I
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL---DLANNQI 251
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 189 LMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSD 248
L ++ EL + N L+ LA++T+L LD+++NQ++ + +PL LT + EL+L
Sbjct: 216 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGA 270
Query: 249 NHF 251
N
Sbjct: 271 NQI 273
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 54/205 (26%)
Query: 49 NVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFP 108
++ SL+NL +LD++ N+I N P GL KL L L I + S L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISPL-------- 279
Query: 109 SLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL--MPSLKY 166
G +LE LN + L+ I + + +L Y
Sbjct: 280 --------------------AGLTALTNLE----------LNENQLEDISPISNLKNLTY 309
Query: 167 LSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL 226
L+L + N+I + + SL +Q L +N + S LAN+T++ L NQ+
Sbjct: 310 LTLYF-----NNISDI-SPVSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQI 361
Query: 227 TGSISSSPLIHLTSIEELRLSDNHF 251
+ +PL +LT I +L L+D +
Sbjct: 362 S---DLTPLANLTRITQLGLNDQAW 383
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 33/237 (13%)
Query: 409 FGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNF-NLTNLRWL 467
F + L++L+L+ N+ I +I + G NL+ L LS NL G +++ NF L + ++
Sbjct: 286 FETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLS-YNLLGELYSSNFYGLPKVAYI 343
Query: 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSG-----KIPRWLGNLKGLKHIIMP---- 518
L+ NH Q+ L+ L L +N+L+ IP L G K + +P
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF--LSGNKLVTLPKINL 401
Query: 519 --------ENHLEGPIPMEF-CQLYSLQLLDISDNNISGS----LPSCFHLLSIEQVHLS 565
EN LE + F ++ LQ+L ++ N S PS S+EQ+ L
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS--ENPSLEQLFLG 459
Query: 566 KNMLR----GQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNL 618
+NML+ +L F S L L L++N LN P L+ LR L L N L
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 27/202 (13%)
Query: 44 LEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRS 103
L G + F L + +D+ N I Q Q + L KL++L L RD + L +
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDL-----RDNA--LTT 376
Query: 104 MGSFPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLE-MDDARIALNTSFLQII----- 157
+ PS+ ++L GN S LE +D L LQI+
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436
Query: 158 ------GELMPSLKYLSLSYSTPGTNSIEI-LDQGLC-----SLMHMQELHIAHNDLRGS 205
G+ PS + SL G N +++ + LC L H+Q L++ HN L
Sbjct: 437 RFSSCSGDQTPS-ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 206 LPWCLANMTSLRILDVSSNQLT 227
P +++T+LR L ++SN+LT
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLT 517
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 41/238 (17%)
Query: 46 GSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRD-GSKLLRSM 104
I+ F L+ LE+LD+S N P + GL +L +LHL R G+++ G L R +
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128
Query: 105 GSFPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSL 164
+L LYL N +L+ L D R N + L + G + S+
Sbjct: 129 A---ALQYLYLQDN-----------------ALQALPDDTFRDLGNLTHLFLHGNRISSV 168
Query: 165 KYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSN 224
+ G +S++ L L+H + H P ++ L L + +N
Sbjct: 169 PERAFR----GLHSLDRL------LLHQNRVAHVH-------PHAFRDLGRLMTLYLFAN 211
Query: 225 QLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQ 282
L+ ++ + L L +++ LRL+DN + PL+ + LQ F ++E+ + Q
Sbjct: 212 NLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQ 266
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Query: 391 LISFNISMNALNGSI-PSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNN 449
L ++S NA S+ P++F + L L L L E+ L G L+YL L +N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA 140
Query: 450 LEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 509
L+ +L NL L L N ++ SL+ L L+ N ++ P +L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 510 KGLKHIIMPENHLEGPIPME-FCQLYSLQLLDISDN 544
L + + N+L +P E L +LQ L ++DN
Sbjct: 201 GRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Query: 407 SSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFN-LTNLR 465
+SF +L IL L +N ++ I G LE L LS+N + F+ L L
Sbjct: 50 ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 466 WLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGP 525
L L+ P ++L+ LYL +N+L +L L H+ + N +
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
Query: 526 IPMEFCQLYSLQLLDISDNNISGSLPSCF 554
F L+SL L + N ++ P F
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 41/238 (17%)
Query: 46 GSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRD-GSKLLRSM 104
I+ F L+ LE+LD+S N P + GL +L +LHL R G+++ G L R +
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 127
Query: 105 GSFPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSL 164
+L LYL N +L+ L D R N + L + G + S+
Sbjct: 128 A---ALQYLYLQDN-----------------ALQALPDDTFRDLGNLTHLFLHGNRISSV 167
Query: 165 KYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSN 224
+ G +S++ L L+H + H P ++ L L + +N
Sbjct: 168 PERAFR----GLHSLDRL------LLHQNRVAHVH-------PHAFRDLGRLMTLYLFAN 210
Query: 225 QLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQ 282
L+ ++ + L L +++ LRL+DN + PL+ + LQ F ++E+ + Q
Sbjct: 211 NLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQ 265
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 391 LISFNISMNALNGSI-PSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNN 449
L ++S NA S+ P++F + L L L L E+ L G L+YL L +N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA 139
Query: 450 LEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 509
L+ +L NL L L N ++ SL+ L L+ N ++ P +L
Sbjct: 140 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 510 KGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544
L + + N+L L +LQ L ++DN
Sbjct: 200 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Query: 407 SSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFN-LTNLR 465
+SF +L IL L +N ++ I G LE L LS+N + F+ L L
Sbjct: 49 ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 107
Query: 466 WLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGP 525
L L+ P ++L+ LYL +N+L +L L H+ + N +
Sbjct: 108 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 167
Query: 526 IPMEFCQLYSLQLLDISDNNISGSLPSCF 554
F L+SL L + N ++ P F
Sbjct: 168 PERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 9/205 (4%)
Query: 365 QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQ 424
+ RLLD+ N + E P L ++ N ++ P +F N+ +L+ L L +N+
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 425 LIGEIPEHLAVGCVNLEYLTLSNNN---LEGHMFTRNFNLTNLRWLQLESNHFVGEIPQS 481
L IP + G NL L +S N L +MF +L NL+ L++ N V ++
Sbjct: 92 L-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRA 147
Query: 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDI 541
S +SLE L L +L+ L +L GL + + ++ F +LY L++L+I
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
Query: 542 SDNNISGSL-PSCFHLLSIEQVHLS 565
S ++ P+C + L++ + ++
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSIT 232
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 43/306 (14%)
Query: 175 GTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 233
G N I+ L+Q S H++EL + N + P N+ +LR L + SN+L I
Sbjct: 40 GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLG 98
Query: 234 PLIHLTSIEELRLSDNHFRIPIS--LEPLFNHSRLQIFD---------AYN--NEINAEI 280
L+++ +L +S+N I + + L+N L++ D A++ N +
Sbjct: 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158
Query: 281 TQSPSLT--PNFQLSHL---------SLSFGYGDGVTFPKFLYHQHDLVNVDLSHIK-MN 328
+ +LT P LSHL L+ +F + + L +++SH ++
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL----YRLKVLEISHWPYLD 214
Query: 329 GGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDIL 388
PN L N L +LS+ + +L L + LR L++S N I G +L
Sbjct: 215 TMTPNCLYGLN--LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP----ISTIEGSML 268
Query: 389 PSLISFNISMNALNGSI----PSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLT 444
L+ + + G + P +F +N L++L++S NQL + E + NLE L
Sbjct: 269 HELLRLQ-EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI 326
Query: 445 LSNNNL 450
L +N L
Sbjct: 327 LDSNPL 332
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 164 LKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSS 223
L++L+LSY+ T +L + L+ +QE+ + L P+ + LR+L+VS
Sbjct: 250 LRFLNLSYNPISTIEGSMLHE----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 224 NQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQS 283
NQLT ++ S + ++E L L N PL RL +N Q
Sbjct: 306 NQLT-TLEESVFHSVGNLETLILDSN---------PLACDCRLLWVFRRRWRLNFNRQQP 355
Query: 284 PSLTPNF 290
TP F
Sbjct: 356 TCATPEF 362
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 529 EFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTL 587
EF L+ L++++N +S P F+ L ++ + L N L+ + G F S+L L
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109
Query: 588 DLSYNRLNGSIPNWVDGLSQLRHLILGHNNL 618
D+S N++ + L L+ L +G N+L
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 20/237 (8%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
L +L N S N L P N+ L + ++NNQ+ P NL LTL N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 121
Query: 448 NNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507
N + +N LTNL L+L SN + +I +LS +SL+ L N K P L
Sbjct: 122 NQITDIDPLKN--LTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFGNQVTDLK-P--LA 174
Query: 508 NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567
NL L+ + + N + I + +L +L+ L ++N IS P L +++++ L+ N
Sbjct: 175 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGN 231
Query: 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624
L+ GT + ++L LDL+ N+++ P + GL++L L LG N + P+
Sbjct: 232 QLK---DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 283
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 153/366 (41%), Gaps = 87/366 (23%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEEL 244
G+ L ++ +++ ++N L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 117
Query: 245 RLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDG 304
L +N ++PL N + L + +N I ++I+ LT QLS +G+
Sbjct: 118 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLS-------FGNQ 166
Query: 305 VTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHK 364
VT K L + L +D+S K++ +L T LE+L
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESL------------------- 204
Query: 365 QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS---LQILDLS 421
++ NN +I DI P I N+ +LNG+ G + S L LDL+
Sbjct: 205 ------IATNN-------QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251
Query: 422 NNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQS 481
NNQ+ P L G LT L L+L +N P
Sbjct: 252 NNQISNLAP-------------------LSG--------LTKLTELKLGANQISNISP-- 282
Query: 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDI 541
L+ ++L L LN N L P + NLK L ++ + N++ P+ L LQ L
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 338
Query: 542 SDNNIS 547
+N +S
Sbjct: 339 YNNKVS 344
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 54/205 (26%)
Query: 49 NVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFP 108
++ SL+NL +LD++ N+I N P GL KL L L I + S L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISPL-------- 283
Query: 109 SLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL--MPSLKY 166
G +LE LN + L+ I + + +L Y
Sbjct: 284 --------------------AGLTALTNLE----------LNENQLEDISPISNLKNLTY 313
Query: 167 LSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL 226
L+L + N+I + + SL +Q L +N + S LAN+T++ L NQ+
Sbjct: 314 LTLYF-----NNISDI-SPVSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQI 365
Query: 227 TGSISSSPLIHLTSIEELRLSDNHF 251
+ +PL +LT I +L L+D +
Sbjct: 366 S---DLTPLANLTRITQLGLNDQAW 387
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 20/237 (8%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
L +L N S N L P N+ L + ++NNQ+ P NL LTL N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 120
Query: 448 NNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507
N + +N LTNL L+L SN + +I +LS +SL+ L N K P L
Sbjct: 121 NQITDIDPLKN--LTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFGNQVTDLK-P--LA 173
Query: 508 NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567
NL L+ + + N + I + +L +L+ L ++N IS P L +++++ L+ N
Sbjct: 174 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGN 230
Query: 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624
L+ GT + ++L LDL+ N+++ P + GL++L L LG N + P+
Sbjct: 231 QLK---DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 282
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 154/366 (42%), Gaps = 87/366 (23%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEEL 244
G+ L ++ +++ ++N L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 116
Query: 245 RLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDG 304
L +N ++PL N + L + +N I ++I+ LT QLS +G+
Sbjct: 117 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLS-------FGNQ 165
Query: 305 VTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHK 364
VT K L + L +D+S K++ +L T LE+L
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESL------------------- 203
Query: 365 QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS---LQILDLS 421
++ NN +I DI P I N+ +LNG+ G + S L LDL+
Sbjct: 204 ------IATNN-------QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 250
Query: 422 NNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQS 481
NNQ+ P L G LT L L+L +N P
Sbjct: 251 NNQISNLAP-------------------LSG--------LTKLTELKLGANQISNISP-- 281
Query: 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDI 541
L+ ++L L LN N L P + NLK L ++ + N++ P+ L LQ L
Sbjct: 282 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 337
Query: 542 SDNNIS 547
++N +S
Sbjct: 338 ANNKVS 343
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 54/205 (26%)
Query: 49 NVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFP 108
++ SL+NL +LD++ N+I N P GL KL L L I + S L
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISPL-------- 282
Query: 109 SLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL--MPSLKY 166
G +LE LN + L+ I + + +L Y
Sbjct: 283 --------------------AGLTALTNLE----------LNENQLEDISPISNLKNLTY 312
Query: 167 LSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL 226
L+L + N+I + + SL +Q L A+N + S LAN+T++ L NQ+
Sbjct: 313 LTLYF-----NNISDI-SPVSSLTKLQRLFFANN--KVSDVSSLANLTNINWLSAGHNQI 364
Query: 227 TGSISSSPLIHLTSIEELRLSDNHF 251
+ +PL +LT I +L L+D +
Sbjct: 365 S---DLTPLANLTRITQLGLNDQAW 386
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 20/237 (8%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
L +L N S N L P N+ L + ++NNQ+ P NL LTL N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 448 NNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507
N + +N LTNL L+L SN + +I +LS +SL+ L N K P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFGNQVTDLK-P--LA 169
Query: 508 NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567
NL L+ + + N + I + +L +L+ L ++N IS P L +++++ L+ N
Sbjct: 170 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGN 226
Query: 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624
L+ GT + ++L LDL+ N+++ P + GL++L L LG N + P+
Sbjct: 227 QLK---DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 278
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 154/366 (42%), Gaps = 87/366 (23%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEEL 244
G+ L ++ +++ ++N L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 245 RLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDG 304
L +N ++PL N + L + +N I ++I+ LT QL+ +G+
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLN-------FGNQ 161
Query: 305 VTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHK 364
VT K L + L +D+S K++ +L T LE+L
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESL------------------- 199
Query: 365 QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS---LQILDLS 421
++ NN +I DI P I N+ +LNG+ G + S L LDL+
Sbjct: 200 ------IATNN-------QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 246
Query: 422 NNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQS 481
NNQ+ P L G LT L L+L +N P
Sbjct: 247 NNQISNLAP-------------------LSG--------LTKLTELKLGANQISNISP-- 277
Query: 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDI 541
L+ ++L L LN N L P + NLK L ++ + N++ P+ L LQ L
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 333
Query: 542 SDNNIS 547
S+N +S
Sbjct: 334 SNNKVS 339
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 54/205 (26%)
Query: 49 NVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFP 108
++ SL+NL +LD++ N+I N P GL KL L L I + S L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISPL-------- 278
Query: 109 SLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL--MPSLKY 166
G +LE LN + L+ I + + +L Y
Sbjct: 279 --------------------AGLTALTNLE----------LNENQLEDISPISNLKNLTY 308
Query: 167 LSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL 226
L+L + N+I + + SL +Q L ++N + S LAN+T++ L NQ+
Sbjct: 309 LTLYF-----NNISDI-SPVSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQI 360
Query: 227 TGSISSSPLIHLTSIEELRLSDNHF 251
+ +PL +LT I +L L+D +
Sbjct: 361 S---DLTPLANLTRITQLGLNDQAW 382
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 20/237 (8%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
L +L N S N L P N+ L + ++NNQ+ P NL LTL N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 448 NNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507
N + +N LTNL L+L SN + +I +LS +SL+ L N K P L
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFGNQVTDLK-P--LA 169
Query: 508 NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567
NL L+ + + N + I + +L +L+ L ++N IS P L +++++ L+ N
Sbjct: 170 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGN 226
Query: 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624
L+ GT + ++L LDL+ N+++ P + GL++L L LG N + P+
Sbjct: 227 QLK---DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 278
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 87/366 (23%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEEL 244
G+ L ++ +++ ++N L P L N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 245 RLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDG 304
L +N ++PL N + L + +N I ++I+ LT QL+ +G+
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLN-------FGNQ 161
Query: 305 VTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHK 364
VT K L + L +D+S K++ +L T LE+L
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESL------------------- 199
Query: 365 QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS---LQILDLS 421
++ NN +I DI P I N+ +LNG+ G + S L LDL+
Sbjct: 200 ------IATNN-------QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 246
Query: 422 NNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQS 481
NNQ+ P L G LT L L+L +N P
Sbjct: 247 NNQISNLAP-------------------LSG--------LTKLTELKLGANQISNISP-- 277
Query: 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDI 541
L+ ++L L LN N L P + NLK L ++ + N++ P+ L LQ L
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 333
Query: 542 SDNNIS 547
+N +S
Sbjct: 334 YNNKVS 339
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 54/205 (26%)
Query: 49 NVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFP 108
++ SL+NL +LD++ N+I N P GL KL L L I + S L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISPL-------- 278
Query: 109 SLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL--MPSLKY 166
G +LE LN + L+ I + + +L Y
Sbjct: 279 --------------------AGLTALTNLE----------LNENQLEDISPISNLKNLTY 308
Query: 167 LSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL 226
L+L + N+I + + SL +Q L +N + S LAN+T++ L NQ+
Sbjct: 309 LTLYF-----NNISDI-SPVSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQI 360
Query: 227 TGSISSSPLIHLTSIEELRLSDNHF 251
+ +PL +LT I +L L+D +
Sbjct: 361 S---DLTPLANLTRITQLGLNDQAW 382
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 11/224 (4%)
Query: 395 NISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHM 454
N ++ +G + S N NS+ D S+ +L IP ++ L+ + ++L
Sbjct: 1 NEALCKKDGGVCSCNNNKNSV---DCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKA 56
Query: 455 FTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKH 514
F R LT LR L L N + +LE L++ +N L L L
Sbjct: 57 FHR---LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 515 IIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF--HLLSIEQVHLSKNMLRGQ 572
+ + N L+ P F L L L + N + SLP L S++++ L N L+ +
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-R 171
Query: 573 LKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHN 616
+ G F + L TL L N+L D L +L+ L L N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 462 TNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENH 521
+ + L L+SN ++ + + L LYLN+N L LK L+ + + +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 522 LEG-PIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFF 579
L+ PI + F QL +L L + N + P F L + + L N L+ L +G F
Sbjct: 97 LQALPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 580 NCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVP 623
+SL L L N+L D L++L+ L L +N L+ VP
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 179 IEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHL 238
I + DQ L+++ EL + N L+ P ++T L L + N+L S+ L
Sbjct: 102 IGVFDQ----LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156
Query: 239 TSIEELRLSDNHF-RIPISLEPLFNH-SRLQIFDAYNNEI 276
TS++ELRL +N R+P E F+ + L+ NN++
Sbjct: 157 TSLKELRLYNNQLKRVP---EGAFDKLTELKTLKLDNNQL 193
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 15/202 (7%)
Query: 53 FDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNT 112
F + ++ELD++ ++ +P G G+ LK L L+ ++ + SFPSL
Sbjct: 273 FRCFTRVQELDLTAAHLNG--LPSGIEGMNSLKKLVLNANSFDQLCQI--NAASFPSLRD 328
Query: 113 LYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARI-ALNTSFLQIIGELMPSLKYLSLSY 171
LY+ GN + ++L+ L++ + I A + LQ+ + L+YL+LSY
Sbjct: 329 LYIKGN--MRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN--LRHLQYLNLSY 384
Query: 172 STPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWC-LANMTSLRILDVSSNQLTGSI 230
+ P + + DQ ++ L +A L P N+ LR+L++S L S
Sbjct: 385 NEP----LGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS- 439
Query: 231 SSSPLIHLTSIEELRLSDNHFR 252
+ L L + L L N F+
Sbjct: 440 NQHLLAGLQDLRHLNLQGNSFQ 461
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 439 NLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN--HFVG-EIPQSLSKCSSLEGLYLNN 495
NLE L L +N++ NF NL+ L ++N H++ + SL + ++L L N
Sbjct: 129 NLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNL-SLNFNG 187
Query: 496 NSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLL------DISDNNISGS 549
N + G P + + + L I + Q +LQ L D D ++ +
Sbjct: 188 NDIKGIEPGAF--ISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSA 245
Query: 550 LPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLR 609
+S+E ++L K+ L TF + + LDL+ LNG +P+ ++G++ L+
Sbjct: 246 TFEGLCDMSVESINLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLK 303
Query: 610 HLILGHNNLE 619
L+L N+ +
Sbjct: 304 KLVLNANSFD 313
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 389 PSLISFNISMNALNGSIPSS-FGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
P L +++ L+ P S F N++ L++L+LS+ L+ +HL G +L +L L
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH-CLLDTSNQHLLAGLQDLRHLNLQG 457
Query: 448 NNLEGHMFTRNFNLT---NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 504
N+ + ++ L +L L L S + + Q+ ++ L L++NSL+G
Sbjct: 458 NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMD 517
Query: 505 WLGNLKGL 512
L +LKGL
Sbjct: 518 ALSHLKGL 525
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 506 LGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF--HLLSIEQVH 563
L L L ++I+ N L+ F +L +L+ L + +N + SLP L ++ ++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 564 LSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHNNLE 619
L+ N L+ L +G F ++L LDLSYN+L S+P V D L+QL+ L L N L+
Sbjct: 140 LAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 1/150 (0%)
Query: 407 SSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRW 466
S+ + +L L L+ NQL +P + NL+ L L N L+ LTNL +
Sbjct: 79 SALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 467 LQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPI 526
L L N K ++L L L+ N L L LK + + +N L+
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 527 PMEFCQLYSLQLLDISDNNISGSLPSCFHL 556
F +L SLQ + + DN + P +L
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 227
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 189 LMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSD 248
L ++ L++AHN L+ +T+L LD+S NQL S+ LT +++LRL
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ 190
Query: 249 NHFR 252
N +
Sbjct: 191 NQLK 194
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 4 LSRLTNLKMLDLRGNLFNNXXXXXXXXXXXXXXXXXXENKLEGSINVKEFDSLSNLEELD 63
+LTNLK L L N + N+L+ S+ FD L+NL ELD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 64 MSGNEIDNFQVPQG-YGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTL-YLW 116
+S N++ + P+G + L +LK L L + ++ G F L +L Y+W
Sbjct: 164 LSYNQLQSL--PEGVFDKLTQLKDLRLYQNQLKSVPD-----GVFDRLTSLQYIW 211
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 366 LRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQL 425
L+ L + N Q +P + D L +L N++ N L F + +L LDLS NQL
Sbjct: 111 LKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 426 IGEIPEHLAVGCVNLEYLTLSNNNLEG---HMFTRNFNLTNLRWLQLESNHFVGEIP 479
+PE + L+ L L N L+ +F R LT+L+++ L N + P
Sbjct: 170 -QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR---LTSLQYIWLHDNPWDCTCP 222
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 47/206 (22%)
Query: 48 INVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLR-SMGS 106
I+ F + L+ELD++ + +P G GL LK L LS + +L + S +
Sbjct: 266 ISSTTFQCFTQLQELDLTATHLKG--LPSGMKGLNLLKKLVLS---VNHFDQLCQISAAN 320
Query: 107 FPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKY 166
FPSL LY+ GN ++ L L+ +G +L+
Sbjct: 321 FPSLTHLYIRGN-------------------------VKKLHLGVGCLEKLG----NLQT 351
Query: 167 LSLSYSTPGTNSIEILDQGLCSLM-----HMQELHIAHNDLRGSLPWCLANMTSLRILDV 221
L LS+ N IE D CSL H+Q L+++HN+ G L +LD+
Sbjct: 352 LDLSH-----NDIEASD--CCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDL 404
Query: 222 SSNQLTGSISSSPLIHLTSIEELRLS 247
+ +L + SP +L ++ L L+
Sbjct: 405 AFTRLHINAPQSPFQNLHFLQVLNLT 430
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 439 NLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN--HFVG-EIPQSLSKCSSLEGLYLNN 495
NLE L L +N++ F ++F NL+ L ++N H++ E +SL + +L L N
Sbjct: 127 NLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINL-SLNFNG 185
Query: 496 NSLSG--------KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547
N++ G I + L N G ++ + N L+ L+ DI D +IS
Sbjct: 186 NNVKGIELGAFDSTIFQSL-NFGGTPNLSVIFNGLQNSTTQS---LWLGTFEDIDDEDIS 241
Query: 548 GSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNC-SSLVTLDLSYNRLNGSIPNWVDGLS 606
++ +S+E ++L ++ R T F C + L LDL+ L G +P+ + GL+
Sbjct: 242 SAMLKGLCEMSVESLNLQEH--RFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLN 298
Query: 607 QLRHLILGHNNLE 619
L+ L+L N+ +
Sbjct: 299 LLKKLVLSVNHFD 311
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 113/468 (24%), Positives = 180/468 (38%), Gaps = 113/468 (24%)
Query: 234 PLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEIN-------AEITQSPSL 286
P+ +L ++E L L NH I F L++ D NN I+ + Q+ +L
Sbjct: 121 PVHNLENLESLYLGSNHIS-SIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINL 179
Query: 287 TPNFQLSHLS-LSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWL-----LENNT 340
+ NF +++ + G D F + GG PN L+N+T
Sbjct: 180 SLNFNGNNVKGIELGAFDSTIFQSLNF----------------GGTPNLSVIFNGLQNST 223
Query: 341 R----LETLSLVNDS------LAGPFRLPIHSH--KQLRLLDVSNNNFQGHIPVEIGDI- 387
L T ++D L G + + S ++ R D+S+ FQ ++ D+
Sbjct: 224 TQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLT 283
Query: 388 ------LPS-------LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLA 434
LPS L +S+N + S N SL L + N + ++ HL
Sbjct: 284 ATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VKKL--HLG 339
Query: 435 VGCV----NLEYLTLSNNNLEGHMFT--RNFNLTNLRWLQLESNHFVGEIPQSLSKCSSL 488
VGC+ NL+ L LS+N++E + NL++L+ L L N +G Q+ +C L
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 489 EGLYLNNNSLSGKIPR-------------------------WLGNLKGLKHIIMPENHLE 523
E L L L P+ L L L+H+ + NH +
Sbjct: 400 ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 524 -GPIPME--FCQLYSLQLLDISDNNISGSLPSCFHLL-SIEQVHLSKNMLRGQLKRGTFF 579
G I + SL++L +S + FH L + V LS N L
Sbjct: 460 DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL---------- 509
Query: 580 NCSSL--------VTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619
C S+ + L+L+ N +N P + LSQ + L HN L+
Sbjct: 510 TCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPLD 557
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 440 LEYLTLSNNNLEGHMFTRNFN-LTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL 498
LE L LS N L + FN L +L L+L N Q+ S L L+L NN +
Sbjct: 61 LEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 499 SGKIPRW------------LGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNI 546
IP + LG LK L++I E EG + + + L L DI
Sbjct: 120 ES-IPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDI----- 171
Query: 547 SGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLS 606
P+ L+ +E++ LS N L ++ G+F +SL L L + ++ N D L
Sbjct: 172 ----PNLTALVRLEELELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 607 QLRHLILGHNNL 618
L L L HNNL
Sbjct: 227 SLEELNLSHNNL 238
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 29/213 (13%)
Query: 58 NLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWG 117
N L++ N I + + LR L+ L LS+ +R + + PSLNTL L+
Sbjct: 36 NTRYLNLQENSIQVIRT-DTFKHLRHLEILQLSKNLVRKIE--VGAFNGLPSLNTLELFD 92
Query: 118 NNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSL-------- 169
N Q F + L L + + I S +PSL+ L L
Sbjct: 93 NRLTTVPT---QAFEYLSKLRELWLRNNPIE---SIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 170 --SYSTPGTNSIEILDQGLC---------SLMHMQELHIAHNDLRGSLPWCLANMTSLRI 218
+ G ++ L+ G+C +L+ ++EL ++ N L P +TSLR
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 219 LDVSSNQLTGSISSSPLIHLTSIEELRLSDNHF 251
L + Q+ +I + L S+EEL LS N+
Sbjct: 207 LWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 537 QLLDISDNNISGSLPSCF-HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLN 595
+ L++ +N+I F HL +E + LSKN++R +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 596 GSIPNWVDGLSQLRHLILGHNNLE 619
+ LS+LR L L +N +E
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIE 120
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 380 IPVEIGDILPSLISFNISMNALNGSIPS-SFGNINSLQILDLSNNQLIGEIPEHLAVGCV 438
+P + + L L + N + SIPS +F + SL+ LDL + + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 439 NLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL 498
NL YL L NL+ L L L+L N P S +SL L+L + +
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 499 SGKIPRWLGNLKGLKHIIMPENHL 522
+ +LK L+ + + N+L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL 238
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 46 GSINVKEFDSLS---NLEELDMSGNEIDNFQVPQGYGGLRKLKSLHL 89
G N+K+ +L+ LEEL++SGN +D + P + GL L+ L L
Sbjct: 164 GMCNLKDIPNLTALVRLEELELSGNRLDLIR-PGSFQGLTSLRKLWL 209
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 50/237 (21%)
Query: 394 FNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGH 453
N+ N++ +F ++ L+IL LS N + + VG N
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKN-----LVRKIEVGAFN-------------- 80
Query: 454 MFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW-------- 505
L +L L+L N Q+ S L L+L NN + IP +
Sbjct: 81 ------GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSL 133
Query: 506 ----LGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQ 561
LG LK L++I E EG + + + L L DI P+ L+ +E+
Sbjct: 134 RRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDI---------PNLTALVRLEE 182
Query: 562 VHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNL 618
+ LS N L ++ G+F +SL L L + ++ N D L L L L HNNL
Sbjct: 183 LELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 58 NLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWG 117
N L++ N I + + LR L+ L LS+ +R + + PSLNTL L+
Sbjct: 36 NTRYLNLQENSIQVIRT-DTFKHLRHLEILQLSKNLVRKIE--VGAFNGLPSLNTLELFD 92
Query: 118 NNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSL-------- 169
N Q F + L L + + I S+ +PSL+ L L
Sbjct: 93 NRLTTVPT---QAFEYLSKLRELWLRNNPIESIPSY---AFNRVPSLRRLDLGELKRLEY 146
Query: 170 --SYSTPGTNSIEILDQGLC---------SLMHMQELHIAHNDLRGSLPWCLANMTSLRI 218
+ G ++ L+ G+C +L+ ++EL ++ N L P +TSLR
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 219 LDVSSNQLTGSISSSPLIHLTSIEELRLSDNHF 251
L + Q+ +I + L S+EEL LS N+
Sbjct: 207 LWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 537 QLLDISDNNISGSLPSCF-HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLN 595
+ L++ +N+I F HL +E + LSKN++R +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 596 GSIPNWVDGLSQLRHLILGHNNLEG 620
+ LS+LR L L +N +E
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIES 121
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 380 IPVEIGDILPSLISFNISMNALNGSIPS-SFGNINSLQILDLSNNQLIGEIPEHLAVGCV 438
+P + + L L + N + SIPS +F + SL+ LDL + + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 439 NLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL 498
NL YL L NL+ L L L+L N P S +SL L+L + +
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 499 SGKIPRWLGNLKGLKHIIMPENHL 522
+ +LK L+ + + N+L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL 238
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 46 GSINVKEFDSLS---NLEELDMSGNEIDNFQVPQGYGGLRKLKSLHL 89
G N+K+ +L+ LEEL++SGN +D + P + GL L+ L L
Sbjct: 164 GMCNLKDIPNLTALVRLEELELSGNRLDLIR-PGSFQGLTSLRKLWL 209
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 159/423 (37%), Gaps = 72/423 (17%)
Query: 260 LFNHSRLQIFDAYNNEINAEITQ---------SPSLTPNFQLSHLSLSFGYGDGVTFPKF 310
+ +H+R+Q D + N E+ S P L HL LSF D + K
Sbjct: 51 IISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKE 110
Query: 311 L--YHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRL 368
Q + + +H++ + P L + L L P L + + L +
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQI------LDLSN 422
+ +N F + V + + +S NI + + LQ L L+N
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELS-NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229
Query: 423 NQL-------IGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFV 475
+ I ++ H V Y ++SN L+G + R+F+ + L + V
Sbjct: 230 IETTWNSFIRILQLVWHTTVW-----YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284
Query: 476 GEI---PQSL--------------------------SKCSSLEGLYLNNNSLSGKIPRWL 506
++ PQS SK S L +NN L+ +
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344
Query: 507 GNLKGLKHIIMPENHLE--GPIPMEFCQLYSLQLLDISDNNISGSLPS--CFHLLSIEQV 562
G+L L+ +I+ N L+ I Q+ SLQ LDIS N++S C S+ +
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
Query: 563 HLSKNMLRGQLKRGTFFNC--SSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG 620
++S N+L T F C + LDL N++ SIP V L L+ L + N L+
Sbjct: 405 NMSSNIL-----TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458
Query: 621 EVP 623
VP
Sbjct: 459 -VP 460
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 130/305 (42%), Gaps = 21/305 (6%)
Query: 320 VDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLP---IHSHKQLRLLDVSNNNF 376
D SH+K+ P+ L N T L+L ++ L RLP + QL +LD N+
Sbjct: 9 ADCSHLKLTH-IPDDLPSNIT---VLNLTHNQLR---RLPPTNFTRYSQLAILDAGFNSI 61
Query: 377 QGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVG 436
P E+ ILP L N+ N L+ +F +L LDL +N I +I +
Sbjct: 62 SKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNS-IHKIKSNPFKN 119
Query: 437 CVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKC--SSLEGLYLN 494
NL L LS+N L L NL+ L L N + + L SSL L L+
Sbjct: 120 QKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLS 179
Query: 495 NNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYS---LQLLDISDNNISGSLP 551
+N L P + L +++ L + + C S +Q L +++N + +
Sbjct: 180 SNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSE 239
Query: 552 SCFHLLS---IEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQL 608
S F L + Q+ LS N L + G+F SL L L YN + P GLS L
Sbjct: 240 STFSGLKWTNLTQLDLSYNNLH-DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNL 298
Query: 609 RHLIL 613
R+L L
Sbjct: 299 RYLSL 303
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 114/442 (25%), Positives = 178/442 (40%), Gaps = 64/442 (14%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTG----SISSSPLIHLTSIEELRLSDNH 250
L++ HN LR P + L ILD N ++ PL+ + +++ LS
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQ-- 87
Query: 251 FRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKF 310
IS + + L D +N I+ +I +P
Sbjct: 88 ----ISDQTFVFCTNLTELDLMSNSIH-KIKSNP-------------------------- 116
Query: 311 LYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLA-GPFRLPIHSHKQLRLL 369
+Q +L+ +DLSH ++ ++ E L N LA L + LR L
Sbjct: 117 FKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKL 176
Query: 370 DVSNNNFQGHIP---VEIGDILPSLISFNISMNA-LNGSIPSSFGNINSLQILDLSNNQL 425
D+S+N + P IG + L++ N +N L + N S+Q L L+NNQL
Sbjct: 177 DLSSNPLKEFSPGCFQTIGKLFALLLN-NAQLNPHLTEKLCWELSNT-SIQNLSLANNQL 234
Query: 426 IGEIPEHLA-VGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSK 484
+ + + NL L LS NNL L +LR+L LE N+ P+S
Sbjct: 235 LATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYG 294
Query: 485 CSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544
S+L L SL + +L +I F L L+ L++ DN
Sbjct: 295 LSNLRYL-----SLKRAFTKQSVSLASHPNI----------DDFSFQWLKYLEYLNMDDN 339
Query: 545 NISGSLPSCFH-LLSIEQVHLSKNMLRGQ-LKRGTFFNC--SSLVTLDLSYNRLNGSIPN 600
NI + + F L+S++ + LSK Q L TF + S L+TL+L+ N ++
Sbjct: 340 NIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANG 399
Query: 601 WVDGLSQLRHLILGHNNLEGEV 622
L QLR L LG N +E ++
Sbjct: 400 TFSWLGQLRILDLGLNEIEQKL 421
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 62/493 (12%)
Query: 165 KYLSLSYSTPGTNSIEILDQGLCSLMHM-QELHIAHNDLRGSLPWCLANMTSLRILDVSS 223
+Y L+ G NSI L+ LC ++ + + L++ HN+L T+L LD+ S
Sbjct: 47 RYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMS 106
Query: 224 NQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQS 283
N + I S+P + ++ +L LS N L LQ N+I A ++
Sbjct: 107 NSI-HKIKSNPFKNQKNLIKLDLSHNGLS-STKLGTGVQLENLQELLLAKNKILALRSEE 164
Query: 284 PSLTPNFQLSHLSLS------FGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPN---W 334
N L L LS F G T K L + L++ ++N W
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGK-------LFALLLNNAQLNPHLTEKLCW 217
Query: 335 LLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRL--LDVSNNNFQGHIPVEIGD----IL 388
L +NT ++ LSL N+ L K L LD+S NN ++G+ L
Sbjct: 218 EL-SNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH-----DVGNGSFSYL 271
Query: 389 PSLISFNISMNALNGSIPSSFGNINSLQILDLS---NNQLIG-----EIPEHLAVGCVNL 440
PSL ++ N + P SF +++L+ L L Q + I + L
Sbjct: 272 PSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYL 331
Query: 441 EYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNH-----FVGEIPQSLSKCSSLEGLYLNN 495
EYL + +NN+ L +L++L L E SL+ S L L L
Sbjct: 332 EYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTK 390
Query: 496 NSLSGKIPR----WLGNLK----GLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547
N +S KI WLG L+ GL I E L G E+ L ++ + +S N
Sbjct: 391 NHIS-KIANGTFSWLGQLRILDLGLNEI---EQKLSG---QEWRGLRNIFEIYLSYNKYL 443
Query: 548 GSLPSCFHLL-SIEQVHLSKNMLRG-QLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGL 605
S F L+ S++++ L + L+ + F +L LDLS N + + ++GL
Sbjct: 444 QLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGL 503
Query: 606 SQLRHLILGHNNL 618
L L HNNL
Sbjct: 504 ENLEILDFQHNNL 516
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 119/464 (25%), Positives = 183/464 (39%), Gaps = 103/464 (22%)
Query: 52 EFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRD--GSKLLRSMGSFPS 109
EF S+L +LD+S N + F P + + KL +L L+ + KL + + S
Sbjct: 166 EFLGNSSLRKLDLSSNPLKEFS-PGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TS 223
Query: 110 LNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEM--DDARIALNTSFLQIIGELMPSLKYL 167
+ L L N G + +L L++ ++ N SF +PSL+YL
Sbjct: 224 IQNLSLANNQLLATSESTFSGL-KWTNLTQLDLSYNNLHDVGNGSF-----SYLPSLRYL 277
Query: 168 SLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSS--NQ 225
SL Y N+++ P +++LR L + +
Sbjct: 278 SLEY----------------------------NNIQRLSPRSFYGLSNLRYLSLKRAFTK 309
Query: 226 LTGSISSSPLIH------LTSIEELRLSDNH--------FRIPISLEPLFNHSRLQIFDA 271
+ S++S P I L +E L + DN+ F +SL+ L
Sbjct: 310 QSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQT 369
Query: 272 YNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGF 331
NE + SP LT N +H+S +G TF Q ++++ L+ I+
Sbjct: 370 LTNETFVSLAHSPLLTLNLTKNHIS---KIANG-TFSWL--GQLRILDLGLNEIEQKLSG 423
Query: 332 PNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSL 391
W L F + + +K L+L S ++F ++PSL
Sbjct: 424 QEW---------------RGLRNIFEIYLSYNKYLQL---STSSFA---------LVPSL 456
Query: 392 ISFNISMNAL-NGSI-PSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNN 449
+ AL N I PS F + +L ILDLSNN I I E L G NLE L +NN
Sbjct: 457 QRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNN-IANINEDLLEGLENLEILDFQHNN 515
Query: 450 LEGHMFTR-------NF--NLTNLRWLQLESNHFVGEIPQSLSK 484
L ++ R NF L++L L LESN + EIP + K
Sbjct: 516 L-ARLWKRANPGGPVNFLKGLSHLHILNLESNG-LDEIPVGVFK 557
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 149/390 (38%), Gaps = 53/390 (13%)
Query: 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILD 220
+ L++L + TPG +GL SL+ L + +N + +L +L
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLII---LKLDYNQFLQLETGAFNGLANLEVLT 109
Query: 221 VSSNQLTGSISSSPLIH-LTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAE 279
++ L G++ S LTS+E L L DN+ + N R + D N++ +
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS- 168
Query: 280 ITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLE-- 337
I + L NFQ H +L + LS I + WL
Sbjct: 169 ICEEDLL--NFQGKHFTL----------------------LRLSSITLQDMNEYWLGWEK 204
Query: 338 -----NNTRLETLSL----VNDSLAGPFRLPIHSHKQLRLLDVSNNNFQ---GHIPVEIG 385
NT + TL L +S+A F I K L+ ++ N GH +
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 386 DILP-------SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCV 438
D + + ++S + + + S F + L+ L L+ N+ I +I ++ G
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLT 323
Query: 439 NLEYLTLSNNNLEGHMFTRNF-NLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNS 497
+L L LS N L G + +R F NL L L L NH QS +L+ L L+ N
Sbjct: 324 HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 498 LSGKIPRWLGNLKGLKHIIMPENHLEGPIP 527
L L L+ I + N + P
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 388 LPSLISFNISMNALNGSIPSS-FGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLS 446
L L+ N+S N L GSI S F N++ L++LDLS N I + + +G NL+ L L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALD 379
Query: 447 NNNLEG---HMFTRNFNLTNLRWLQLESNHFVGEIPQ--SLSKCSSLEGLYLNNNSLSGK 501
N L+ +F R LT+L+ + L +N + P+ LS+ +LN NS +
Sbjct: 380 TNQLKSVPDGIFDR---LTSLQKIWLHTNPWDCSCPRIDYLSR-------WLNKNSQKEQ 429
Query: 502 -IPRWLGNLKGLKHIIMP 518
+ G+ K ++ II P
Sbjct: 430 GSAKCSGSGKPVRSIICP 447
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 511 GLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLS-IEQVHLSKNML 569
G+K + ++ + + F L+ L ++ N I+ + F L+ + +++LS+N L
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 570 RGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVP 623
G + F N L LDLSYN + GL L+ L L N L+ VP
Sbjct: 336 -GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP 387
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 25/192 (13%)
Query: 439 NLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL 498
+LE L L N++ L +L L+L N + S L L+L NN +
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159
Query: 499 SGKIPRW------------LGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNI 546
IP + LG LK L++I E EG L++L+ L++ NI
Sbjct: 160 E-SIPSYAFNRVPSLMRLDLGELKKLEYI--SEGAFEG--------LFNLKYLNLGMCNI 208
Query: 547 SGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLS 606
+P+ L+ +E++ +S N +++ G+F SSL L + ++++ N DGL+
Sbjct: 209 K-DMPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266
Query: 607 QLRHLILGHNNL 618
L L L HNNL
Sbjct: 267 SLVELNLAHNNL 278
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 404 SIPS-SFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLT 462
SIPS +F + SL LDL + + I E G NL+YL L N++ L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLV 218
Query: 463 NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLS 499
L L++ NHF P S SSL+ L++ N+ +S
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 537 QLLDISDNNISGSLPSCF-HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLN 595
+ L++ +NNI F HL +E + L +N +R Q++ G F +SL TL+L N L
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT 136
Query: 596 GSIPNWVDGLSQLRHLILGHNNLE 619
+ LS+LR L L +N +E
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE 160
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 46 GSINVKEFDSLS---NLEELDMSGNEIDNFQVPQGYGGLRKLKSL 87
G N+K+ +L+ LEEL+MSGN + P + GL LK L
Sbjct: 204 GMCNIKDMPNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKL 247
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 389 PSLISF-NISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVN-LEYLTLS 446
PS +F N + N S+ + LQ L L N L L ++ LE L +S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 447 NNNLEGHMFTRNFNLT-NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 505
N+L H + R ++ L L SN G + + L ++ L L+NN + IP+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKD 468
Query: 506 LGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHL 556
+ +L+ L+ + + N L+ F +L SLQ + + DN + P +L
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 519
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 184 QGLCSLMHMQELHIAHNDLRGSLPWCL--ANMTSLRILDVSSNQLTGSISSSPLIHLTSI 241
QG +L +Q L + N L+ L NM+SL LDVS N L SI
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 242 EELRLSDNHFRIPI--SLEPLFNHSRLQIFDAYNNEI 276
L LS N + L P ++++ D +NN I
Sbjct: 431 LVLNLSSNMLTGSVFRCLPP-----KVKVLDLHNNRI 462
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 537 QLLDISDNNISGSLPSCF-HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLN 595
Q+L + DN I+ P F L+++++++L N L G L G F + + L LDL N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 596 GSIPNWV-DGLSQLRHLILGHNNLEGEVP 623
+P+ V D L L+ L + N L E+P
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELP 128
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 177 NSIEILDQGLC-SLMHMQELHIAHNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSP 234
N I L+ G+ SL++++EL++ N L G+LP ++T L +LD+ +NQLT + S+
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107
Query: 235 LIHLTSIEELRLSDNHF-RIPISLEPLFNHSRLQI 268
L ++EL + N +P +E L + + L +
Sbjct: 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 402 NGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNL 461
+ S+P+ G + QIL L +NQ I ++ + +NL+ L L +N L +L
Sbjct: 31 HASVPA--GIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87
Query: 462 TNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENH 521
T L L L +N + L+ L++ N L+ ++PR + L L H+ + +N
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 522 LEGPIPMEFCQLYSL 536
L+ F +L SL
Sbjct: 147 LKSIPHGAFDRLSSL 161
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 138/364 (37%), Gaps = 71/364 (19%)
Query: 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILD 220
+ L++L + TPG +GL SL+ L + +N + +L +L
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLII---LKLDYNQFLQLETGAFNGLANLEVLT 109
Query: 221 VSSNQLTGSISSSPLIH-LTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAE 279
++ L G++ S LTS+E L L DN+ + N R + D N++ +
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS- 168
Query: 280 ITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENN 339
I + L NFQ H +L + LS I + WL
Sbjct: 169 ICEEDLL--NFQGKHFTL----------------------LRLSSITLQDMNEYWLGW-- 202
Query: 340 TRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGD-ILPSLISFNISM 398
+ PF+ + + LD+S N F+ + D I + I I
Sbjct: 203 ----------EKCGNPFK-----NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 399 NALNGSIPSSFGNIN---------------SLQILDLSNNQ---LIGEIPEHLAVGCVNL 440
N+ N + SSFG+ N ++ DLS ++ L+ + H +L
Sbjct: 248 NSYN--MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF----TDL 301
Query: 441 EYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSG 500
E LTL+ N + + LT+L+ L L++N + +SL+ ++L+ N
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 361
Query: 501 KIPR 504
PR
Sbjct: 362 SCPR 365
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NNNL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++N LT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 539 LDISDNNISGSLPSCF--HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNG 596
LD+ N++ SLP+ L S+ Q++L N L+ L G F +SL L+LS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 597 SIPNWV-DGLSQLRHLILGHNNLE 619
S+PN V D L+QL+ L L N L+
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ 113
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 176 TNSIEILDQGLCS-LMHMQELHIAHNDLRGSLPWCLAN-MTSLRILDVSSNQLTGSISSS 233
TNS++ L G+ L + +L++ N L+ SLP + N +TSL L++S+NQL S+ +
Sbjct: 37 TNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNG 94
Query: 234 PLIHLTSIEELRLSDNHFR 252
LT ++EL L+ N +
Sbjct: 95 VFDKLTQLKELALNTNQLQ 113
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NNNL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++N LT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NNNL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++N LT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NNNL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++N LT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 83 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 139
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NNNL
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNL 161
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 83 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 138
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 93 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 147
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++N LT + + L L +++ L L +N + IP
Sbjct: 148 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 14/201 (6%)
Query: 431 EHLA-VGCVNLEYLTLSNNNLEGHMFTRN--------FNLTNLRWLQLESN--HFVGEIP 479
+HL V C ++ TL +L+ FT N +L +L +L L N F G
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 480 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPME-FCQLYSLQL 538
QS +SL+ L L+ N + +LG L+ L+H+ ++L+ F L +L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 539 LDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGS 597
LDIS + + F+ L S+E + ++ N + F +L LDLS +L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 598 IPNWVDGLSQLRHLILGHNNL 618
P + LS L+ L + HNN
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNF 506
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 100/253 (39%), Gaps = 45/253 (17%)
Query: 345 LSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALN-- 402
L LVN + P K L+ L ++N G+ E+ LPSL ++S N L+
Sbjct: 309 LELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD--LPSLEFLDLSRNGLSFK 362
Query: 403 GSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEG-HMFTRNFNL 461
G S SL+ LDLS N +I L G LE+L ++NL+ F+ +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 462 TNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLKGLKHIIMPEN 520
NL +L + H + SSLE L + NS +P L+ L + + +
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 521 HLEGPIPMEF-------------------------CQLYSLQLLDISDNNISGS------ 549
LE P F C L SLQ+LD S N+I S
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQ 539
Query: 550 -LPSCFHLLSIEQ 561
PS L++ Q
Sbjct: 540 HFPSSLAFLNLTQ 552
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 537 QLLDISDNNISGSLPSCF-HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLN 595
Q L +++N I+ P F HL++++Q++ + N L + G F + L LDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 596 GSIPNWV-DGLSQLRHLILGHNNLEGE 621
SIP D L L H+ L +N + E
Sbjct: 95 -SIPRGAFDNLKSLTHIYLYNNPWDCE 120
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 491 LYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL 550
L+LNNN ++ P +L L+ + N L F +L L LD++DN++
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 551 PSCF-HLLSIEQVHLSKN 567
F +L S+ ++L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 441 EYLTLSNNN---LEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNS 497
+ L L+NN LE +F +L NL+ L SN K + L L LN+N
Sbjct: 36 QRLWLNNNQITKLEPGVFD---HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 498 LSGKIPRW-LGNLKGLKHIIMPEN 520
L IPR NLK L HI + N
Sbjct: 93 LK-SIPRGAFDNLKSLTHIYLYNN 115
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 193 QELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
Q L + +N + P ++ +L+ L +SN+LT +I + LT + +L L+DNH +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK 94
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NN+L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNDL 160
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++N LT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 506 LGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF--HLLSIEQVH 563
L L L ++I+ N L+ F +L +L+ L + +N + SLP L ++ ++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLY 139
Query: 564 LSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHNNLE 619
L N L+ L +G F ++L LDL N+L S+P V D L+QL+ L L N L+
Sbjct: 140 LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 461 LTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPEN 520
L N+R+L L N + +I +L + ++L L L N L L LK +++ EN
Sbjct: 62 LPNVRYLALGGNK-LHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 521 HLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF--HLLSIEQVHLSKNMLRGQLKRGTF 578
L+ F +L +L L + N + SLP L ++ ++ L N L+ L G F
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVF 177
Query: 579 FNCSSLVTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHN 616
+ L L L+ N+L S+P+ V D L+ L H+ L +N
Sbjct: 178 DKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 438 VNLEYLTLSNNNLEG---HMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLN 494
NL YL L+ N L+ +F + LTNL+ L L N K ++L LYL
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDK---LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLY 141
Query: 495 NNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF 554
+N L L L + + N L+ F +L L+ L ++DN + F
Sbjct: 142 HNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Query: 555 HLLS 558
L+
Sbjct: 202 DRLT 205
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 189 LMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSD 248
L ++ L++ HN L+ +T+L LD+ +NQL S+ LT +++L L+D
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLND 190
Query: 249 NHFR 252
N +
Sbjct: 191 NQLK 194
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 41/225 (18%)
Query: 405 IPSSFGN-INSLQILDLSNNQLIGEIPEHLAVGCV--NLEYLTLSNNNLEGHMFTRNFNL 461
+P SF + SL+ LDLS N ++ E ++ A +L+ L LS N+L T L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 462 T--NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPE 519
T NL L + N F +P S C E + N S +G ++ +K I P+
Sbjct: 385 TLKNLTSLDISRNTF-HPMPDS---CQWPEKMRFLNLSSTG--------IRVVKTCI-PQ 431
Query: 520 NHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFF 579
+L++LD+S+NN+ L ++++++S+N L+ L + F
Sbjct: 432 ---------------TLEVLDVSNNNLDS---FSLFLPRLQELYISRNKLK-TLPDASLF 472
Query: 580 NCSSLVTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHNNLEGEVP 623
L+ + +S N+L S+P+ + D L+ L+ + L N + P
Sbjct: 473 PV--LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 535 SLQLLDISDNNIS----GSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLS 590
+++ LD+S N I+ G L +C +L QV + K+ ++ F++ SL LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANL----QVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 591 YNRLNGSIPNWVDGLSQLRHLILGHN 616
N L+ +W LS L++L L N
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 25/172 (14%)
Query: 56 LSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYL 115
L+ + EL++SGN + N GL+ +K+L L+ I D + + +L LYL
Sbjct: 84 LTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYL 136
Query: 116 WGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPG 175
N +L++L + +A+++ +L P L+
Sbjct: 137 DLNQITNISP-----LAGLTNLQYLSIGNAQVS----------DLTPLANLSKLTTLKAD 181
Query: 176 TNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLT 227
N I + L SL ++ E+H+ +N + P LAN ++L I+ +++ +T
Sbjct: 182 DNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++NQLT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 117/453 (25%), Positives = 175/453 (38%), Gaps = 103/453 (22%)
Query: 189 LMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQLTGSISSSPL------------ 235
L ++EL++AHN ++ LP +N+T+L LD+SSN++ SI + L
Sbjct: 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 205
Query: 236 ----------IHLTSIEELRL----------SDNHFRIPISLEPLFNHSRLQIFDAYNNE 275
I + +E+RL S N + I RL + + NE
Sbjct: 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL-VLGEFRNE 264
Query: 276 INAEITQSPSL-------TPNFQLSHLSLSFGYGDGVT--FPKFL-YHQHDLVNVDLSHI 325
N E +L F+L++L Y DG+ F LV+V + +
Sbjct: 265 GNLEKFDKSALEGLCNLTIEEFRLAYLDY---YLDGIIDLFNCLTNVSSFSLVSVTIERV 321
Query: 326 KMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIG 385
K W + L LVN + P K L+ L ++N G+ E+
Sbjct: 322 KDFSYNFGW--------QHLELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD 369
Query: 386 DILPSLISFNISMNALN---GSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEY 442
LPSL ++S N L+ S FG I SL+ LDLS N +I L G LE+
Sbjct: 370 --LPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVITMSSNFL--GLEQLEH 424
Query: 443 LTLSNNNLEG-HMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK 501
L ++NL+ F+ +L NL +L + H + SSLE L + NS
Sbjct: 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 502 -IPRWLGNLKGLKHIIMPENHLEGPIPMEF-------------------------CQLYS 535
+P L+ L + + + LE P F C L S
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC-LNS 543
Query: 536 LQLLDISDNNISGS-------LPSCFHLLSIEQ 561
LQ+LD S N+I S PS L++ Q
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 14/201 (6%)
Query: 431 EHLA-VGCVNLEYLTLSNNNLEGHMFTRN--------FNLTNLRWLQLESN--HFVGEIP 479
+HL V C ++ TL +L+ FT N +L +L +L L N F G
Sbjct: 331 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 390
Query: 480 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPME-FCQLYSLQL 538
QS SL+ L L+ N + +LG L+ L+H+ ++L+ F L +L
Sbjct: 391 QSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 539 LDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGS 597
LDIS + + F+ L S+E + ++ N + F +L LDLS +L
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 598 IPNWVDGLSQLRHLILGHNNL 618
P + LS L+ L + HNN
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNF 530
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 160/402 (39%), Gaps = 46/402 (11%)
Query: 56 LSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRD-GSKLLRSMGSFPSLNTLY 114
L L+EL+++ N I +F++P+ + L L+ L LS I+ LR + P LN
Sbjct: 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-- 204
Query: 115 LWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTP 174
F + + + + + N L ++ + L L +
Sbjct: 205 ------SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258
Query: 175 GT----NSIEILD----QGLCSLMHMQELHIAHND--LRGSLPW--CLANMTSL------ 216
G ++E D +GLC+L ++E +A+ D L G + CL N++S
Sbjct: 259 GEFRNEGNLEKFDKSALEGLCNLT-IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT 317
Query: 217 --RILDVSSN-------QLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQ 267
R+ D S N + P + L S++ L + N S L L+
Sbjct: 318 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL---PSLE 374
Query: 268 IFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSH--I 325
D N ++ + S S L +L LSF +T L ++D H +
Sbjct: 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 326 KMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIG 385
K F +L N +S + +A F + L +L ++ N+FQ + +I
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490
Query: 386 DILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIG 427
L +L ++S L P++F +++SLQ+L++S+N
Sbjct: 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 16/190 (8%)
Query: 440 LEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN--HFVG-EIPQSLSKCSSLEGLYLNNN 496
LE L L +N++ + F L+ L ++N H++ E SL + ++L L LN N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGN 189
Query: 497 SLSGKIPRWLG-------NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGS 549
++G P N G +++++ L+ L+ D+ D +IS +
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS---LWLGTFEDMDDEDISPA 246
Query: 550 LPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLR 609
+ +S+E ++L K+ + TF S L LDL+ L +P+ + GLS L+
Sbjct: 247 VFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLK 304
Query: 610 HLILGHNNLE 619
L+L N E
Sbjct: 305 KLVLSANKFE 314
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 37/253 (14%)
Query: 370 DVSNNNFQGHIPVEIGDI-LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
D+S F+G + + I L FNIS N +F + LQ LDL+ L E
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSN--------TFHCFSGLQELDLTATHL-SE 292
Query: 429 IPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSL 488
+P L VG L+ L LS N E N +L L ++ N E+ + C
Sbjct: 293 LPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG---TGC--- 345
Query: 489 EGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGP--IPMEFCQLYSLQLLDISDNN- 545
L NL+ L+ + + + +E ++ L LQ L++S N
Sbjct: 346 -----------------LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388
Query: 546 ISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGL 605
+S + +E + L+ L+ + + F N L L+LS++ L+ S DGL
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448
Query: 606 SQLRHLILGHNNL 618
L+HL L N+
Sbjct: 449 PALQHLNLQGNHF 461
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 24/93 (25%)
Query: 526 IPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLV 585
+P E L L+D+S+N IS L +F N + L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS------------------------TLSNQSFSNMTQLL 81
Query: 586 TLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNL 618
TL LSYNRL P DGL LR L L N++
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 467 LQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPI 526
L L+ N F +P+ LS L + L+NN +S + N+ L +I+ N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 527 PMEFCQLYSLQLLDISDNNIS 547
P F L SL+LL + N+IS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS 115
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 360 IHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILD 419
+ ++K L L+D+SNN + + L++ +S N L P +F + SL++L
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 420 LSNNQLIGEIPE----------HLAVG 436
L N I +PE HLA+G
Sbjct: 109 LHGND-ISVVPEGAFNDLSALSHLAIG 134
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQL 160
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++NQLT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++NQLT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
LD+S+N Q +P+ +G LP+L ++S N L + + LQ L L N+L
Sbjct: 82 LDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KT 138
Query: 429 IPEHLAVGCVNLEYLTLSNNNL 450
+P L LE L+L+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQL 160
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQG-LCSLMHMQELHIAHNDLRGSLPWCLAN 212
L ++G+ +P+L L +S+ N + L G L L +QEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 213 MTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNH-FRIP 254
L L +++NQLT + + L L +++ L L +N + IP
Sbjct: 147 TPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 LHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFR 252
L ++HN L+ SLP + +L +LDVS N+LT S+ L L ++EL L N +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 461 LTNLRWLQLESN--HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMP 518
LT L L L SN F G QS +SL+ L L+ N + +LG L+ L+H+
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 109
Query: 519 ENHLEGPIPME-FCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRG 576
++L+ F L +L LDIS + + F+ L S+E + ++ N +
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 577 TFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNL 618
F +L LDLS +L P + LS L+ L + HNN
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 33/210 (15%)
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALN--GSIPSSFGNINSLQILDLSNNQLI 426
L++ +N Q +P + D L L ++S N L+ G S SL+ LDLS N +I
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 427 GEIPEHLAVGCVNLEYLTLSNNNLEG-HMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKC 485
L G LE+L ++NL+ F+ +L NL +L + H +
Sbjct: 92 TMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 486 SSLEGLYLNNNSLSGK-IPRWLGNLKGLKHIIMPENHLEGPIPMEF-------------- 530
SSLE L + NS +P L+ L + + + LE P F
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 531 -----------CQLYSLQLLDISDNNISGS 549
C L SLQ+LD S N+I S
Sbjct: 210 NFFSLDTFPYKC-LNSLQVLDYSLNHIMTS 238
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 366 LRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNN 423
L +L ++ N+FQ + +I L +L ++S L P++F +++SLQ+L++S+N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 388 LPSLISFNISMN----------ALNG----SIPSSFGNINSLQILDLSNNQLIGEIPEHL 433
L +L FNIS N LNG +P+ N+++L++LDLS+N+L +P L
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 434 AVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGL-- 491
C L+Y +N + + NL NL++L +E N + + L++ S+ GL
Sbjct: 290 G-SCFQLKYFYFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQFLKILTE-KSVTGLIF 346
Query: 492 YLNNNSLSGKIP 503
YL +N +P
Sbjct: 347 YLRDNRPEIPLP 358
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 441 EYLTLSNNNLEGHM-FTRNFNLTNLRWLQLE-SNHFVGEIPQSLSKCSSLEGLYLNNNSL 498
+Y ++++E M ++ + W L+ SN + I ++ K L LYLN NSL
Sbjct: 200 QYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL 259
Query: 499 SGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF---- 554
+ ++P + NL L+ + + N L +P E + L+ DN ++ +LP F
Sbjct: 260 T-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC 316
Query: 555 --HLLSIEQVHLSKNMLR 570
L +E L K L+
Sbjct: 317 NLQFLGVEGNPLEKQFLK 334
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 157/390 (40%), Gaps = 69/390 (17%)
Query: 48 INVKEFDSLSNLEELDMSGNEIDNFQ--VPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMG 105
+NV DS + L +L+ E +N Q GL ++ L+L R + S+
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI----SLA 315
Query: 106 SFPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTS--FLQIIGELMPS 163
S P ++ F K LEHL M+D I S F +I
Sbjct: 316 SLPKIDDF----------------SFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN----- 354
Query: 164 LKYLSLSYSTPGTNSIEILDQGLCSLMH--MQELHIAHNDLRGSLPWCLANMTSLRILDV 221
LKYLSLS S ++ ++ SL H + L++ N + + + L +LD+
Sbjct: 355 LKYLSLSNSFTSLRTLT--NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 222 SSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEIT 281
N++ ++ L +I E+ LS N + LQ+
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKY--------------LQL-----------TR 447
Query: 282 QSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTR 341
S +L P+ Q L + + P +L +DLS+ + + +LE +
Sbjct: 448 NSFALVPSLQRLMLR-RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-MLEGLEK 505
Query: 342 LETLSLVNDSLAGPFRL-----PIHSHK---QLRLLDVSNNNFQGHIPVEIGDILPSLIS 393
LE L L +++LA ++ PI+ K L +L++ +N F IPVE+ L L
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 564
Query: 394 FNISMNALNGSIPSSFGNINSLQILDLSNN 423
++ +N LN S F N SL+ L+L N
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 124/506 (24%), Positives = 195/506 (38%), Gaps = 88/506 (17%)
Query: 165 KYLSLSYSTPGTNSIEILDQGLCSLMHM-QELHIAHNDLRGSLPWCLANMTSLRILDVSS 223
+Y L+ G N+I L+ LC + M + L++ HN+L A T+L L + S
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Query: 224 NQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQS 283
N + I ++P + ++ L LS N L LQ NN+I A ++
Sbjct: 107 NSIQ-KIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 284 PSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWL-LE-NNTR 341
+ N L L LS + P + L + L+++++ L LE NT
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 342 LETLSLVNDSLAGPFRLPIHSHK--QLRLLDVSNNNF----------------------- 376
+ LSL N L+ K L +LD+S NN
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 377 ---------QGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIG 427
G V ++ S +IS+ +L SF + L+ L++ +N + G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Query: 428 EIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN--HFVGEIPQSLSKC 485
I ++ G +NL+YL+LSN+ FT LTN ++ L + H + +SK
Sbjct: 344 -IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396
Query: 486 SS--------LEGLYLNNNSLSGKIP--RWLGNLKGLKHIIMPENHLEGPIPMEFCQLYS 535
S LE L L N + ++ W G L+ + I + N F + S
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPS 455
Query: 536 LQLL---DISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYN 592
LQ L ++ N+ S PS F L +L LDLS N
Sbjct: 456 LQRLMLRRVALKNVDSS-PSPFQPLR------------------------NLTILDLSNN 490
Query: 593 RLNGSIPNWVDGLSQLRHLILGHNNL 618
+ + ++GL +L L L HNNL
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNL 516
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 130/327 (39%), Gaps = 58/327 (17%)
Query: 314 QHDLVNVDLSHIKMNG-----GFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRL 368
Q+D V D+ HI M GF + L NN ++ T N ++ + S +Q+ L
Sbjct: 18 QYDCVFYDV-HIDMQTQDVYFGFEDITL-NNQKIVTFK--NSTMRKLPAALLDSFRQVEL 73
Query: 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428
L++++ + I ++ + NA+ P F N+ L +L L N L
Sbjct: 74 LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SS 131
Query: 429 IPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF-------------- 474
+P + L L++SNNNLE T+L+ LQL SN
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191
Query: 475 ---------------VGEIPQSLSKCSSLEG--------LYLNNNSLSGKIPRWLGNLKG 511
V E+ S + + + G L L +N+L+ WL N G
Sbjct: 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPG 249
Query: 512 LKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN-----NISGSLPSCFHLLSIEQ---VH 563
L + + N LE + F ++ L+ L IS+N N+ G +L + +H
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 309
Query: 564 LSKNMLRGQLKRGTFFNCSSLVTLDLS 590
+ +N + + + +S+VTL LS
Sbjct: 310 VERNQPQFDRLENLYLDHNSIVTLKLS 336
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 130/328 (39%), Gaps = 60/328 (18%)
Query: 314 QHDLVNVDLSHIKMNG-----GFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRL 368
Q+D V D+ HI M GF + L NN ++ T N ++ + S +Q+ L
Sbjct: 24 QYDCVFYDV-HIDMQTQDVYFGFEDITL-NNQKIVTFK--NSTMRKLPAALLDSFRQVEL 79
Query: 369 LDVSNNNFQ-GHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIG 427
L++ N+ Q I ++ + NA+ P F N+ L +L L N L
Sbjct: 80 LNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-S 136
Query: 428 EIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF------------- 474
+P + L L++SNNNLE T+L+ LQL SN
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 196
Query: 475 ----------------VGEIPQSLSKCSSLEG--------LYLNNNSLSGKIPRWLGNLK 510
V E+ S + + + G L L +N+L+ WL N
Sbjct: 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYP 254
Query: 511 GLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN-----NISGSLPSCFHLLSIEQ---V 562
GL + + N LE + F ++ L+ L IS+N N+ G +L + +
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314
Query: 563 HLSKNMLRGQLKRGTFFNCSSLVTLDLS 590
H+ +N + + + +S+VTL LS
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIVTLKLS 342
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 41/225 (18%)
Query: 405 IPSSFGN-INSLQILDLSNNQLIGEIPEHLAV--GCVNLEYLTLSNNNLEGHMFTRNFNL 461
+P SF + SL+ LDLS N ++ E ++ A +L+ L LS N+L T L
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 462 T--NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPE 519
T NL L + N F +P S C E + N S +G ++ +K I P+
Sbjct: 411 TLKNLTSLDISRNTF-HPMPDS---CQWPEKMRFLNLSSTG--------IRVVKTCI-PQ 457
Query: 520 NHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFF 579
+L++LD+S+NN+ L ++++++S+N L+ L + F
Sbjct: 458 ---------------TLEVLDVSNNNLDS---FSLFLPRLQELYISRNKLK-TLPDASLF 498
Query: 580 NCSSLVTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHNNLEGEVP 623
L+ + ++ N+L S+P+ + D L+ L+ + L N + P
Sbjct: 499 PV--LLVMKIASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 540
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 535 SLQLLDISDNNIS----GSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLS 590
+++ LD+S N I+ G L +C +L QV + K+ ++ F++ SL LDLS
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANL----QVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 591 YNRLNGSIPNWVDGLSQLRHLILGHN 616
N L+ +W LS L++L L N
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 157/390 (40%), Gaps = 69/390 (17%)
Query: 48 INVKEFDSLSNLEELDMSGNEIDNFQ--VPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMG 105
+NV DS + L +L+ E +N Q GL ++ L+L R + S+
Sbjct: 265 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI----SLA 320
Query: 106 SFPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTS--FLQIIGELMPS 163
S P ++ F K LEHL M+D I S F +I
Sbjct: 321 SLPKIDDF----------------SFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN----- 359
Query: 164 LKYLSLSYSTPGTNSIEILDQGLCSLMH--MQELHIAHNDLRGSLPWCLANMTSLRILDV 221
LKYLSLS S ++ ++ SL H + L++ N + + + L +LD+
Sbjct: 360 LKYLSLSNSFTSLRTLT--NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 417
Query: 222 SSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEIT 281
N++ ++ L +I E+ LS N + LQ+
Sbjct: 418 GLNEIGQELTGQEWRGLENIFEIYLSYNKY--------------LQL-----------TR 452
Query: 282 QSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTR 341
S +L P+ Q L + + P +L +DLS+ + + +LE +
Sbjct: 453 NSFALVPSLQRLMLR-RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-MLEGLEK 510
Query: 342 LETLSLVNDSLAGPFRL-----PIHSHK---QLRLLDVSNNNFQGHIPVEIGDILPSLIS 393
LE L L +++LA ++ PI+ K L +L++ +N F IPVE+ L L
Sbjct: 511 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 569
Query: 394 FNISMNALNGSIPSSFGNINSLQILDLSNN 423
++ +N LN S F N SL+ L+L N
Sbjct: 570 IDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 124/506 (24%), Positives = 195/506 (38%), Gaps = 88/506 (17%)
Query: 165 KYLSLSYSTPGTNSIEILDQGLCSLMHM-QELHIAHNDLRGSLPWCLANMTSLRILDVSS 223
+Y L+ G N+I L+ LC + M + L++ HN+L A T+L L + S
Sbjct: 52 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 111
Query: 224 NQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQS 283
N + I ++P + ++ L LS N L LQ NN+I A ++
Sbjct: 112 NSIQ-KIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEE 169
Query: 284 PSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWL-LE-NNTR 341
+ N L L LS + P + L + L+++++ L LE NT
Sbjct: 170 LDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 228
Query: 342 LETLSLVNDSLAGPFRLPIHSHK--QLRLLDVSNNNF----------------------- 376
+ LSL N L+ K L +LD+S NN
Sbjct: 229 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 288
Query: 377 ---------QGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIG 427
G V ++ S +IS+ +L SF + L+ L++ +N + G
Sbjct: 289 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 348
Query: 428 EIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN--HFVGEIPQSLSKC 485
I ++ G +NL+YL+LSN+ FT LTN ++ L + H + +SK
Sbjct: 349 -IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 401
Query: 486 SS--------LEGLYLNNNSLSGKIP--RWLGNLKGLKHIIMPENHLEGPIPMEFCQLYS 535
S LE L L N + ++ W G L+ + I + N F + S
Sbjct: 402 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPS 460
Query: 536 LQLL---DISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYN 592
LQ L ++ N+ S PS F L +L LDLS N
Sbjct: 461 LQRLMLRRVALKNVDSS-PSPFQPLR------------------------NLTILDLSNN 495
Query: 593 RLNGSIPNWVDGLSQLRHLILGHNNL 618
+ + ++GL +L L L HNNL
Sbjct: 496 NIANINDDMLEGLEKLEILDLQHNNL 521
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 11/191 (5%)
Query: 391 LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAV--------GCVNLEY 442
L + ++ N L ++P+S ++N L+ L + + E+PE LA G VNL+
Sbjct: 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 443 LTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 502
L L + + NL NL+ L++ ++ P ++ LE L L +
Sbjct: 188 LRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245
Query: 503 PRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQV 562
P G LK +I+ + +P++ +L L+ LD+ LPS L +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Query: 563 HLSKNMLRGQL 573
L L+ QL
Sbjct: 306 ILVPPHLQAQL 316
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 438 VNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSL---EGLYLN 494
LE LTL+ N L + +L LR L + + + E+P+ L+ + +GL +N
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL-VN 184
Query: 495 NNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF 554
SL + W G ++ L P L +L+ L I ++ +S P+
Sbjct: 185 LQSLRLE---WTG-IRSL--------------PASIANLQNLKSLKIRNSPLSALGPAIH 226
Query: 555 HLLSIEQVHLSKNML----------RGQLKRGTFFNCSSLVTLDLSYNRLN 595
HL +E++ L R LKR +CS+L+TL L +RL
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 94/423 (22%), Positives = 170/423 (40%), Gaps = 47/423 (11%)
Query: 56 LSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRD-GSKLLRSMGSFPSLNTLY 114
L L+EL+++ N I +F++P+ + L L+ L LS I+ LR + P LN
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-- 180
Query: 115 LWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTP 174
F + + + + + N L ++ + L L +
Sbjct: 181 ------SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 175 GT----NSIEILD----QGLCSLMHMQELHIAHNDLR----GSLPWCLANMTSL------ 216
G ++E D +GLC+L ++E +A+ D L CL N++S
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLT-IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 217 --RILDVSSN-------QLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQ 267
R+ D S N + P + L S++ L + N S L L+
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL---PSLE 350
Query: 268 IFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSH--I 325
D N ++ + S S L +L LSF +T L ++D H +
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 326 KMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIG 385
K F +L N +S + +A F + L +L ++ N+FQ + +I
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 386 DILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTL 445
L +L ++S L P++F +++SLQ+L++++NQL +P+ + +L+ + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWL 525
Query: 446 SNN 448
N
Sbjct: 526 HTN 528
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 122/486 (25%), Positives = 207/486 (42%), Gaps = 49/486 (10%)
Query: 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILD 220
P L+ L LS T I D SL H+ L + N ++ + ++SL+ L
Sbjct: 51 FPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 221 VSSNQLTGSISSSPLIHLTSIEELRLSDN---HFRIPISLEPLFNHSRLQIFDAYNNEIN 277
L S+ + P+ HL +++EL ++ N F++P E N + L+ D +N+I
Sbjct: 107 AVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQ 162
Query: 278 A-------EITQSPSLTPNFQLSHLSLSF---GYGDGVTFPKF-LYHQHDLVNVDLSHIK 326
+ + Q P L + LS ++F G + K L + D +NV + I+
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
Query: 327 MNGGFPNWLL-----ENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIP 381
G L N LE +L G L I + L LD ++
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFD--KSALEGLCNLTIEEFR-LAYLDYYLDDI----- 274
Query: 382 VEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLE 441
+++ + L ++ SF S+ ++ F Q L+L N + G+ P + +L+
Sbjct: 275 IDLFNCLTNVSSF--SLVSVTIERVKDFSYNFGWQHLELVNCKF-GQFP---TLKLKSLK 328
Query: 442 YLTLSNNNLEGHMFTRNFNLTNLRWLQLESN--HFVGEIPQSLSKCSSLEGLYLNNNSLS 499
LT ++N G+ F+ +L +L +L L N F G QS +SL+ L L+ N +
Sbjct: 329 RLTFTSNK-GGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 500 GKIPRWLGNLKGLKHIIMPENHLEGPIPME-FCQLYSLQLLDISDNNISGSLPSCFH-LL 557
+LG L+ L+H+ ++L+ F L +L LDIS + + F+ L
Sbjct: 387 TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 558 SIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNN 617
S+E + ++ N + F +L LDLS +L P + LS L+ L + N
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 618 LEGEVP 623
L+ VP
Sbjct: 506 LKS-VP 510
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 116/481 (24%), Positives = 185/481 (38%), Gaps = 114/481 (23%)
Query: 189 LMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQLTGSISSSPL------------ 235
L ++EL++AHN ++ LP +N+T+L LD+SSN++ SI + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181
Query: 236 ----------IHLTSIEELRL----------SDNHFRIPISLEPLFNHSRLQIFDAYNNE 275
I + +E+RL S N + I RL + + NE
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL-VLGEFRNE 240
Query: 276 INAEITQSPSL-------TPNFQLSHLSLSFGYGDGVTFPKFLYH--QHDLVNVDLSHIK 326
N E +L F+L++L + D + L + LV+V + +K
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLD--YYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 327 MNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGD 386
W + L LVN + P K L+ L ++N G+ E+
Sbjct: 299 DFSYNFGW--------QHLELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD- 345
Query: 387 ILPSLISFNISMNALN--GSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLT 444
LPSL ++S N L+ G S SL+ LDLS N +I L G LE+L
Sbjct: 346 -LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLD 402
Query: 445 LSNNNLEG-HMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP 503
++NL+ F+ +L NL +L + H + SSLE L + NS
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---- 458
Query: 504 RWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVH 563
E +P F +L +L LD+S + P+ F+ LS
Sbjct: 459 -------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----- 494
Query: 564 LSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHNNLEGEV 622
SL L+++ N+L S+P+ + D L+ L+ + L N +
Sbjct: 495 -------------------SLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 623 P 623
P
Sbjct: 535 P 535
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 334 WLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLIS 393
WL + +L+TLS AG F +L L ++NN +P+ + D L L
Sbjct: 63 WLNLDYNQLQTLS------AGVF----DDLTELGTLGLANNQL-ASLPLGVFDHLTQLDK 111
Query: 394 FNISMNALNGSIPSS-FGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEG 452
+ N L S+PS F + L+ L L+ NQL IP NL+ L+LS N L+
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 453 HMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLN 494
L L+ + L N F CS E LYL+
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQF---------DCSRCETLYLS 202
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Query: 355 PFRLPIHSHK----QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFG 410
P +P + K L +S+ F+G L L N+ N L F
Sbjct: 30 PSGIPADTEKLDLQSTGLATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 411 NINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLE---GHMFTRNFNLTNLRWL 467
++ L L L+NNQL +P + L+ L L N L+ +F R LT L+ L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR---LTKLKEL 136
Query: 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSL 498
+L +N + K ++L+ L L+ N L
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 525 PIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSL 584
P E L S L +SD G L + ++L N L+ L G F + + L
Sbjct: 34 PADTEKLDLQSTGLATLSDATFRG-------LTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85
Query: 585 VTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHNNLE 619
TL L+ N+L S+P V D L+QL L LG N L+
Sbjct: 86 GTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK 120
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 156/390 (40%), Gaps = 69/390 (17%)
Query: 48 INVKEFDSLSNLEELDMSGNEIDNFQ--VPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMG 105
+NV DS + L +L+ E +N Q GL ++ L+L R + S+
Sbjct: 270 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI----SLA 325
Query: 106 SFPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTS--FLQIIGELMPS 163
S P ++ F K LEHL M+D I S F +I
Sbjct: 326 SLPKIDDF----------------SFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN----- 364
Query: 164 LKYLSLSYSTPGTNSIEILDQGLCSLMH--MQELHIAHNDLRGSLPWCLANMTSLRILDV 221
LKYLSLS S ++ ++ SL H + L++ N + + + L +LD+
Sbjct: 365 LKYLSLSNSFTSLRTLT--NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 422
Query: 222 SSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEIT 281
N++ ++ +E R +N F I +S +R
Sbjct: 423 GLNEIGQELTG---------QEWRGLENIFEIYLSYNKYLQLTR---------------- 457
Query: 282 QSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTR 341
S +L P+ Q L + + P +L +DLS+ + + +LE +
Sbjct: 458 NSFALVPSLQRLMLR-RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-MLEGLEK 515
Query: 342 LETLSLVNDSLAGPFRL-----PIHSHK---QLRLLDVSNNNFQGHIPVEIGDILPSLIS 393
LE L L +++LA ++ PI+ K L +L++ +N F IPVE+ L L
Sbjct: 516 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 574
Query: 394 FNISMNALNGSIPSSFGNINSLQILDLSNN 423
++ +N LN S F N SL+ L+L N
Sbjct: 575 IDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 186 LCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELR 245
L +L + EL ++ N L+ +A + S++ LD++S Q+T +PL L++++ L
Sbjct: 87 LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLY 141
Query: 246 LSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLS 296
L N ++ PL + LQ NN++N LTP LS L+
Sbjct: 142 LDLNQI---TNISPLAGLTNLQYLSIGNNQVN-------DLTPLANLSKLT 182
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSN 447
L S+ + +++ + P +++LQ+L L NQ+ P G NL+YL++ N
Sbjct: 112 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGN 166
Query: 448 NNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507
N + T NL+ L L+ + N P L+ +L ++L +N +S P L
Sbjct: 167 NQVND--LTPLANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LA 220
Query: 508 NLKGL 512
NL L
Sbjct: 221 NLSNL 225
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL-------TGSIS------ 231
G+ +++ELH++HN + P L ++T L L V+ N+L + +S
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115
Query: 232 -----SSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEI 276
+ LIHL ++E L + +N + + L L S+L++ D + NEI
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFL---SKLEVLDLHGNEI 162
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 189 LMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSD 248
L+ + L ++HN LR LP LA + L +L S N L + +L ++EL L +
Sbjct: 462 LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQELLLCN 517
Query: 249 NHFRIPISLEPLFNHSRLQIFDAYNNEINAE 279
N + +++PL + RL + + N + E
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 189 LMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSD 248
L+ + L ++HN LR LP LA + L +L S N L + +L ++EL L +
Sbjct: 462 LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQELLLCN 517
Query: 249 NHFRIPISLEPLFNHSRLQIFDAYNNEINAE 279
N + +++PL + RL + + N + E
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 334 WLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLIS 393
WL + +L+TLS AG F +L L ++NN +P+ + D L L
Sbjct: 63 WLNLDYNQLQTLS------AGVF----DDLTELGTLGLANNQL-ASLPLGVFDHLTQLDK 111
Query: 394 FNISMNALNGSIPSS-FGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEG 452
+ N L S+PS F + L+ L L+ NQL IP NL+ L+LS N L+
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 453 HMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLN 494
L L+ + L N F CS E LYL+
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQF---------DCSRCEILYLS 202
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Query: 355 PFRLPIHSHK----QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFG 410
P +P + K L +S+ F+G L L N+ N L F
Sbjct: 30 PSGIPADTEKLDLQSTGLATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 411 NINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLE---GHMFTRNFNLTNLRWL 467
++ L L L+NNQL +P + L+ L L N L+ +F R LT L+ L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR---LTKLKEL 136
Query: 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSL 498
+L +N + K ++L+ L L+ N L
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 525 PIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSL 584
P E L S L +SD G L + ++L N L+ L G F + + L
Sbjct: 34 PADTEKLDLQSTGLATLSDATFRG-------LTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85
Query: 585 VTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHNNLE 619
TL L+ N+L S+P V D L+QL L LG N L+
Sbjct: 86 GTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK 120
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 425 LIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLS 483
LIGE+ ++ G +E+ L+N G ++ +T++ WL +E N +G+ Q L+
Sbjct: 101 LIGEVDAEVSTG-DKIEFPVLANGKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLA 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 7/183 (3%)
Query: 440 LEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNH--FVGEIPQSLSKCSSLEGLYLNNNS 497
L+ LTL+ N +G + + L +L +L L N F G S +SL L L+ N
Sbjct: 330 LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 498 LSGKIPRWLGNLKGLKHIIMPENHLEGPIPM-EFCQLYSLQLLDISDNNISGSLPSCF-H 555
++G L+ L+H+ + L+ F L L LDIS N F
Sbjct: 388 AIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446
Query: 556 LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGH 615
L S+ + ++ N + F N ++L LDLS +L D L +L+ L + H
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 616 NNL 618
NNL
Sbjct: 507 NNL 509
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNI--NSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTL 445
LPSL ++S NAL+ S S+ ++ NSL+ LDLS N I I +G L++L
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDF 406
Query: 446 SNNNLEGHM-FTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLS-GKIP 503
++ L+ F+ +L L +L + + + +SL L + NS +
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
Query: 504 RWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVH 563
N L + + + LE F L+ LQLL++S NN LL ++ H
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN----------LLFLDSSH 516
Query: 564 LSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGS 597
++ SL TLD S+NR+ S
Sbjct: 517 YNQ--------------LYSLSTLDCSFNRIETS 536
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 386 DILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTL 445
DI S + ++S N L SF N + LQ LDLS + I I + G +L L L
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLIL 87
Query: 446 SNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL-SGKIPR 504
+ N ++ LT+L L + + +L+ L + +N + S K+P
Sbjct: 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147
Query: 505 WLGNLKGLKHIIMPENHLE 523
+ NL L H+ + N+++
Sbjct: 148 YFSNLTNLVHVDLSYNYIQ 166
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 7/183 (3%)
Query: 440 LEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNH--FVGEIPQSLSKCSSLEGLYLNNNS 497
L+ LTL+ N +G + + L +L +L L N F G S +SL L L+ N
Sbjct: 325 LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 382
Query: 498 LSGKIPRWLGNLKGLKHIIMPENHLEGPIPM-EFCQLYSLQLLDISDNNISGSLPSCF-H 555
++G L+ L+H+ + L+ F L L LDIS N F
Sbjct: 383 AIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 441
Query: 556 LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGH 615
L S+ + ++ N + F N ++L LDLS +L D L +L+ L + H
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 616 NNL 618
NNL
Sbjct: 502 NNL 504
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 388 LPSLISFNISMNALNGSIPSSFGNI--NSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTL 445
LPSL ++S NAL+ S S+ ++ NSL+ LDLS N I I +G L++L
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDF 401
Query: 446 SNNNLEGHM-FTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLS-GKIP 503
++ L+ F+ +L L +L + + + +SL L + NS +
Sbjct: 402 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 461
Query: 504 RWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVH 563
N L + + + LE F L+ LQLL++S NN LL ++ H
Sbjct: 462 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN----------LLFLDSSH 511
Query: 564 LSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGS 597
++ SL TLD S+NR+ S
Sbjct: 512 YNQ--------------LYSLSTLDCSFNRIETS 531
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 386 DILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTL 445
DI S + ++S N L SF N + LQ LDLS + I I + G +L L L
Sbjct: 24 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLIL 82
Query: 446 SNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL-SGKIPR 504
+ N ++ LT+L L + + +L+ L + +N + S K+P
Sbjct: 83 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 142
Query: 505 WLGNLKGLKHIIMPENHLE 523
+ NL L H+ + N+++
Sbjct: 143 YFSNLTNLVHVDLSYNYIQ 161
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 460 NLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPE 519
+LT L+ L + SN + +I L+ S L L+LNNN L + +G L L + + +
Sbjct: 263 DLTKLKXLNVGSNQ-ISDI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 520 NHLEGPIPM 528
NH+ P+
Sbjct: 321 NHITDIRPL 329
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 30/232 (12%)
Query: 45 EGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSM 104
E +++ + L+NLE L+++GN+I + L KL +L++ I D + ++
Sbjct: 54 EKVASIQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITD----ISAL 106
Query: 105 GSFPSLNTLYLWGNNFXXXXXXXXQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSL 164
+ +L LYL +N L +L +LN + +L P
Sbjct: 107 QNLTNLRELYLNEDN-----------ISDISPLANLT---KXYSLNLGANHNLSDLSPLS 152
Query: 165 KYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSN 224
L+Y T + ++ + + +L + L + +N + P LA++TSL N
Sbjct: 153 NXTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209
Query: 225 QLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEI 276
Q+T +P+ + T + L++ +N L PL N S+L + N+I
Sbjct: 210 QIT---DITPVANXTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTNQI 255
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 576 GTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619
G F LV L+L N+L G PN +G S ++ L LG N ++
Sbjct: 48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 23/190 (12%)
Query: 440 LEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLS 499
LE L LS N++ L NL L+L N + S L+ L+L NN +
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 500 G-------KIPRW----LGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISG 548
+IP LG LK L +I E EG L +L+ L+++ N+
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYI--SEGAFEG--------LSNLRYLNLAMCNLR- 198
Query: 549 SLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQL 608
+P+ L+ ++++ LS N L ++ G+F L L + +++ N D L L
Sbjct: 199 EIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 609 RHLILGHNNL 618
+ L HNNL
Sbjct: 258 VEINLAHNNL 267
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 404 SIPS-SFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLT 462
SIPS +F I SL+ LDL + + I E G NL YL L+ NL L
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLI 207
Query: 463 NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHL 522
L L L NH P S L+ L++ + + NL+ L I + N+L
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 35/239 (14%)
Query: 316 DLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNN 375
DL N ++ IK +G F N L+N L TL L+N+ ++ +L L +S N
Sbjct: 58 DLQNNKITEIK-DGDFKN--LKN---LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 376 FQGHIPVEIGDILP-SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLA 434
+ E+ + +P +L + N + S F +N + +++L N L E+ A
Sbjct: 112 LK-----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 435 V-GCVNLEYLTLSNNN----------------LEGHMFTRN-----FNLTNLRWLQLESN 472
G L Y+ +++ N L+G+ T+ L NL L L N
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 473 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFC 531
SL+ L L+LNNN L K+P L + K ++ + + N++ +FC
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 35/239 (14%)
Query: 316 DLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNN 375
DL N ++ IK +G F N L+N L TL L+N+ ++ +L L +S N
Sbjct: 58 DLQNNKITEIK-DGDFKN--LKN---LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 376 FQGHIPVEIGDILP-SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLA 434
+ E+ + +P +L + N + S F +N + +++L N L E+ A
Sbjct: 112 LK-----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 435 V-GCVNLEYLTLSNNN----------------LEGHMFTRN-----FNLTNLRWLQLESN 472
G L Y+ +++ N L+G+ T+ L NL L L N
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 473 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFC 531
SL+ L L+LNNN L K+P L + K ++ + + N++ +FC
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 368 LLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIG 427
LLD+S+NN L +L S +S N LN +F + +L+ LDLS+N L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-H 101
Query: 428 EIPEHLAVGCVNLEYLTLSNNNL---EGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSK 484
+ E L LE L L NN++ + + F L L Q + + F E+ + +K
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 485 CSSLEGLYLNNNSLSG-------KIPRWLGN 508
L L L++N L K+P W+ N
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 316 DLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNN 375
DL N D+S ++ + + L L LVN+ ++ ++L+ L +S N+
Sbjct: 60 DLQNNDISELRKDD------FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 376 FQGHIPVEIGDILPS-LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLA 434
VEI LPS L+ I N + F + ++ +++ N L E A
Sbjct: 114 L-----VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 435 VGCVNLEYLTLSNNNLEG---------------HMFTRNFNLTNL-RW-----LQLESNH 473
+ L YL +S L G H + L +L R+ L L N
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 474 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFC 531
SLS +L L+L+NN LS ++P L +LK L+ + + N++ +FC
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 44 LEGSINVKE-----FDSLSNLEELDMSGNEIDNFQVPQG-YGGLRKLKSLHLS 90
LE N++E FD L NLE ++ N++ Q+P+G +G + KLK L+L+
Sbjct: 152 LELRANIEEMPSHLFDDLENLESIEFGSNKLR--QMPRGIFGKMPKLKQLNLA 202
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 386 DILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTL 445
D L L F + L + ++ +L L+L N I E+P HL NLE +
Sbjct: 120 DRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEF 177
Query: 446 SNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 504
+N L + L+ L L SN + +SL+ ++L+ N PR
Sbjct: 178 GSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 9/231 (3%)
Query: 383 EIGDILP-SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLE 441
+I D LP S + ++S N L SF + LQ+LDLS + I I + +L
Sbjct: 22 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLS 80
Query: 442 YLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL-SG 500
L L+ N ++ L++L+ L + + +L+ L + +N + S
Sbjct: 81 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 140
Query: 501 KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL----PSCFHL 556
K+P + NL L+H+ + N ++ + L+ + LL++S + + P F
Sbjct: 141 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 200
Query: 557 LSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQ 607
+ ++++ L N L+ + G F +SL + L N + S P +D LS+
Sbjct: 201 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 249
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 189 LMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQL 226
L ++EL++AHN ++ LP +N+T+L LD+SSN++
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 13/233 (5%)
Query: 383 EIGDILP-SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLE 441
+I D LP S + ++S N L SF + LQ+LDLS + I I + +L
Sbjct: 23 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLS 81
Query: 442 YLTLSNNNLEGHMFTRNFNLTNLRWL-QLESNHFVGE-IPQSLSKCSSLEGLYLNNNSL- 498
L L+ N ++ L++L+ L LE+N E P + +L+ L + +N +
Sbjct: 82 TLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQ 139
Query: 499 SGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL----PSCF 554
S K+P + NL L+H+ + N ++ + L+ + LL++S + + P F
Sbjct: 140 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 199
Query: 555 HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQ 607
+ ++++ L N L+ + G F +SL + L N + S P +D LS+
Sbjct: 200 KEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 250
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 189 LMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQL 226
L ++EL++AHN ++ LP +N+T+L LD+SSN++
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 9/231 (3%)
Query: 383 EIGDILP-SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLE 441
+I D LP S + ++S N L SF + LQ+LDLS + I I + +L
Sbjct: 23 KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLS 81
Query: 442 YLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL-SG 500
L L+ N ++ L++L+ L + + +L+ L + +N + S
Sbjct: 82 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 141
Query: 501 KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL----PSCFHL 556
K+P + NL L+H+ + N ++ + L+ + LL++S + + P F
Sbjct: 142 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 201
Query: 557 LSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQ 607
+ ++++ L N L+ + G F +SL + L N + S P +D LS+
Sbjct: 202 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 250
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 189 LMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQL 226
L ++EL++AHN ++ LP +N+T+L LD+SSN++
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 9/231 (3%)
Query: 383 EIGDILP-SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLE 441
+I D LP S + ++S N L SF + LQ+LDLS + I I + +L
Sbjct: 22 KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLS 80
Query: 442 YLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL-SG 500
L L+ N ++ L++L+ L + + +L+ L + +N + S
Sbjct: 81 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 140
Query: 501 KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL----PSCFHL 556
K+P + NL L+H+ + N ++ + L+ + LL++S + + P F
Sbjct: 141 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 200
Query: 557 LSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQ 607
+ ++++ L N L+ + G F +SL + L N + S P +D LS+
Sbjct: 201 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 249
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 189 LMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQL 226
L ++EL++AHN ++ LP +N+T+L LD+SSN++
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 9/231 (3%)
Query: 383 EIGDILP-SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLE 441
+I D LP S + ++S N L SF + LQ+LDLS + I I + +L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLS 79
Query: 442 YLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL-SG 500
L L+ N ++ L++L+ L + + +L+ L + +N + S
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 501 KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL----PSCFHL 556
K+P + NL L+H+ + N ++ + L+ + LL++S + + P F
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 557 LSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQ 607
+ ++++ L N L+ + G F +SL + L N + S P +D LS+
Sbjct: 200 IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 248
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 189 LMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQL 226
L ++EL++AHN ++ LP +N+T+L LD+SSN++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 450 LEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGN 508
LE +F R LT L L L++N K + L L LN+N L IPR N
Sbjct: 53 LEPGVFDR---LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDN 108
Query: 509 LKGLKHIIMPEN 520
LK L HI + N
Sbjct: 109 LKSLTHIWLLNN 120
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 535 SLQLLDISDNNISGSLPSCF-HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNR 593
+ Q+L + DN I+ P F L + ++ L N L L G F + L L L+ N+
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 97
Query: 594 LNGSIPNWV-DGLSQLRHLILGHN 616
L SIP D L L H+ L +N
Sbjct: 98 LK-SIPRGAFDNLKSLTHIWLLNN 120
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 18/118 (15%)
Query: 147 IALNTSFLQIIGEL--MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRG 204
+AL+T+ ++ I L M +L+ LSL G N I+ ++ ++EL I++N +
Sbjct: 53 LALSTNNIEKISSLSGMENLRILSL-----GRNLIKKIENLDAVADTLEELWISYNQI-A 106
Query: 205 SLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFN 262
SL + + +LR+L +S+N++T L L +E+L L+ N PL+N
Sbjct: 107 SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---------PLYN 154
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 18/118 (15%)
Query: 147 IALNTSFLQIIGEL--MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRG 204
+AL+T+ ++ I L M +L+ LSL G N I+ ++ ++EL I++N +
Sbjct: 54 LALSTNNIEKISSLSGMENLRILSL-----GRNLIKKIENLDAVADTLEELWISYNQI-A 107
Query: 205 SLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFN 262
SL + + +LR+L +S+N++T L L +E+L L+ N PL+N
Sbjct: 108 SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---------PLYN 155
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 555 HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWV-DGLSQLRHLIL 613
L + ++ LS+N ++ L G F + L L L N+L S+PN V D L+QL+ L L
Sbjct: 50 KLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELAL 107
Query: 614 GHNNLE 619
N L+
Sbjct: 108 DTNQLK 113
>pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
Length = 680
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 505 WLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544
W+G GL H ++ +H++ +P +F Q+LD D
Sbjct: 86 WVGTFHGLAHRLLRAHHMDANLPQDF------QILDSEDQ 119
>pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
Length = 647
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 505 WLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544
W+G GL H ++ +H++ +P +F Q+LD D
Sbjct: 86 WVGTFHGLAHRLLRAHHMDANLPQDF------QILDSEDQ 119
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 342 LETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNAL 401
LE L++ ++ L LP + L LDVS N F G + ++ P+L N S N +
Sbjct: 259 LEALNVRDNYLTDLPELP----QSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEI 309
Query: 402 NG--SIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNF 459
+P S L+ L++SNN+LI L LE L S N H+
Sbjct: 310 RSLCDLPPS------LEELNVSNNKLI-----ELPALPPRLERLIASFN----HLAEVPE 354
Query: 460 NLTNLRWLQLESNHF--VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGL 512
NL+ L +E N +IP+S+ L NS ++P NLK L
Sbjct: 355 LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPELPQNLKQL 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,425,257
Number of Sequences: 62578
Number of extensions: 814657
Number of successful extensions: 2573
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1688
Number of HSP's gapped (non-prelim): 505
length of query: 740
length of database: 14,973,337
effective HSP length: 106
effective length of query: 634
effective length of database: 8,340,069
effective search space: 5287603746
effective search space used: 5287603746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)