Query 044924
Match_columns 740
No_of_seqs 434 out of 3700
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.4E-54 5.2E-59 512.5 39.7 519 32-649 69-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-52 6.1E-57 494.9 37.7 539 7-644 68-608 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.5E-41 5.5E-46 337.4 5.9 385 308-700 95-489 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.2E-37 2.6E-42 311.2 6.8 439 191-693 79-530 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.3E-37 4.9E-42 296.1 -11.4 457 131-643 64-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.3E-35 7.2E-40 281.3 -10.3 478 8-547 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.3E-33 1.2E-37 293.1 -3.5 507 12-640 2-510 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 5.1E-32 1.1E-36 272.9 -2.2 330 307-647 47-379 (1255)
9 KOG0618 Serine/threonine phosp 100.0 4.4E-32 9.5E-37 286.3 -3.9 440 136-643 46-489 (1081)
10 KOG0444 Cytoskeletal regulator 100.0 1.7E-31 3.7E-36 269.1 -2.1 383 190-637 7-393 (1255)
11 PLN03210 Resistant to P. syrin 99.9 5E-22 1.1E-26 236.0 27.0 347 257-642 551-905 (1153)
12 KOG4237 Extracellular matrix p 99.9 2.9E-25 6.3E-30 213.2 -3.3 319 363-700 66-394 (498)
13 PLN03210 Resistant to P. syrin 99.9 6.6E-21 1.4E-25 226.5 25.4 83 314-400 633-715 (1153)
14 KOG4237 Extracellular matrix p 99.9 2.1E-23 4.6E-28 200.5 -3.2 89 408-497 269-357 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.7E-19 5.8E-24 196.8 17.8 264 341-650 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4E-19 8.7E-24 195.4 16.5 265 315-626 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 5.1E-18 1.1E-22 188.2 13.5 246 341-643 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 8E-17 1.7E-21 178.7 14.7 293 315-647 178-474 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.4E-18 5.2E-23 178.2 0.9 157 486-642 137-319 (319)
20 KOG0617 Ras suppressor protein 99.7 6.4E-19 1.4E-23 150.1 -6.8 182 459-647 30-216 (264)
21 cd00116 LRR_RI Leucine-rich re 99.6 2.6E-17 5.5E-22 170.6 1.3 136 482-618 161-319 (319)
22 KOG0617 Ras suppressor protein 99.6 5.6E-17 1.2E-21 138.3 -4.8 167 483-654 30-196 (264)
23 KOG1909 Ran GTPase-activating 99.2 2.3E-12 5E-17 123.5 2.3 259 3-277 25-311 (382)
24 KOG3207 Beta-tubulin folding c 99.2 2.9E-12 6.3E-17 126.3 1.6 212 6-252 119-339 (505)
25 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.4E-17 133.2 -3.4 191 440-640 77-270 (722)
26 COG4886 Leucine-rich repeat (L 99.1 7.5E-11 1.6E-15 125.7 7.3 178 463-648 117-295 (394)
27 KOG1909 Ran GTPase-activating 99.1 2E-11 4.4E-16 117.2 1.4 92 161-252 29-133 (382)
28 PF14580 LRR_9: Leucine-rich r 99.1 8.3E-11 1.8E-15 106.3 5.3 129 8-171 19-149 (175)
29 KOG0532 Leucine-rich repeat (L 99.1 5.5E-12 1.2E-16 128.2 -3.3 192 415-617 77-271 (722)
30 COG4886 Leucine-rich repeat (L 99.0 3.1E-10 6.7E-15 121.0 7.3 182 438-627 116-298 (394)
31 KOG3207 Beta-tubulin folding c 99.0 2.9E-11 6.3E-16 119.3 -0.6 111 338-448 119-232 (505)
32 KOG1259 Nischarin, modulator o 99.0 5.4E-11 1.2E-15 111.4 1.1 130 485-644 283-413 (490)
33 KOG2120 SCF ubiquitin ligase, 99.0 2.7E-11 5.8E-16 113.4 -3.1 228 11-250 139-374 (419)
34 PF14580 LRR_9: Leucine-rich r 99.0 5.4E-10 1.2E-14 101.1 4.8 40 580-619 86-126 (175)
35 KOG1259 Nischarin, modulator o 99.0 4.1E-10 8.9E-15 105.6 3.6 232 24-278 174-413 (490)
36 PLN03150 hypothetical protein; 98.9 1.7E-09 3.8E-14 120.3 8.1 112 536-648 420-533 (623)
37 PF13855 LRR_8: Leucine rich r 98.9 2E-09 4.4E-14 79.8 3.6 61 582-642 1-61 (61)
38 KOG2120 SCF ubiquitin ligase, 98.8 3.5E-10 7.6E-15 106.1 -3.6 183 9-225 186-374 (419)
39 PF13855 LRR_8: Leucine rich r 98.8 6.9E-09 1.5E-13 76.9 3.6 60 558-618 2-61 (61)
40 PLN03150 hypothetical protein; 98.8 1.9E-08 4.1E-13 112.2 8.7 108 463-570 419-528 (623)
41 KOG4658 Apoptotic ATPase [Sign 98.7 4.1E-09 8.8E-14 119.8 3.4 108 7-119 544-653 (889)
42 KOG4341 F-box protein containi 98.7 1.7E-09 3.7E-14 106.5 -2.2 266 5-275 161-437 (483)
43 KOG4658 Apoptotic ATPase [Sign 98.6 3.1E-08 6.8E-13 112.7 6.3 250 363-620 544-808 (889)
44 KOG0531 Protein phosphatase 1, 98.6 9.7E-09 2.1E-13 109.4 0.2 244 389-647 72-322 (414)
45 KOG0531 Protein phosphatase 1, 98.5 1.1E-08 2.5E-13 108.9 -1.5 218 411-643 70-290 (414)
46 COG5238 RNA1 Ran GTPase-activa 98.5 6.2E-08 1.3E-12 90.0 2.3 200 4-205 26-257 (388)
47 KOG2982 Uncharacterized conser 98.4 3.2E-07 6.9E-12 86.6 4.8 110 7-118 44-156 (418)
48 KOG4341 F-box protein containi 98.4 3.1E-08 6.6E-13 97.9 -2.0 261 6-271 188-459 (483)
49 KOG2982 Uncharacterized conser 98.4 4.6E-08 1E-12 92.1 -1.0 233 31-272 44-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.3 2.5E-07 5.4E-12 86.2 1.1 143 133-277 28-198 (388)
51 KOG1859 Leucine-rich repeat pr 98.3 2.5E-08 5.5E-13 104.8 -6.2 129 135-278 164-293 (1096)
52 KOG1859 Leucine-rich repeat pr 98.2 2E-08 4.4E-13 105.5 -7.9 20 406-425 102-121 (1096)
53 KOG4579 Leucine-rich repeat (L 98.1 2.2E-07 4.8E-12 77.3 -3.2 114 532-649 51-165 (177)
54 KOG3665 ZYG-1-like serine/thre 98.0 2.5E-06 5.5E-11 94.8 2.5 205 8-221 60-282 (699)
55 KOG3665 ZYG-1-like serine/thre 97.9 9.2E-06 2E-10 90.5 3.8 84 9-95 123-208 (699)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.4E-10 53.7 3.0 36 583-619 2-37 (44)
57 KOG4579 Leucine-rich repeat (L 97.8 1E-06 2.3E-11 73.4 -3.8 109 535-647 28-139 (177)
58 KOG1644 U2-associated snRNP A' 97.7 3.5E-05 7.6E-10 69.2 4.5 130 11-147 22-152 (233)
59 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.8E-10 52.5 3.0 37 606-643 1-37 (44)
60 PF13306 LRR_5: Leucine rich r 97.7 5.8E-05 1.3E-09 66.0 5.6 12 573-584 117-128 (129)
61 PRK15386 type III secretion pr 97.7 0.00015 3.3E-09 74.2 8.8 54 437-496 51-104 (426)
62 PRK15386 type III secretion pr 97.6 0.00025 5.5E-09 72.7 8.5 136 482-641 48-188 (426)
63 PF13306 LRR_5: Leucine rich r 97.6 0.00019 4.2E-09 62.7 6.8 37 505-542 30-66 (129)
64 KOG1644 U2-associated snRNP A' 97.5 0.00019 4E-09 64.6 5.8 111 161-277 41-153 (233)
65 KOG1947 Leucine rich repeat pr 97.3 6.9E-05 1.5E-09 82.5 1.2 138 29-169 185-328 (482)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00021 4.6E-09 67.2 1.1 113 27-144 38-152 (260)
67 KOG1947 Leucine rich repeat pr 97.0 0.00031 6.7E-09 77.4 1.7 243 6-276 186-439 (482)
68 KOG2123 Uncharacterized conser 96.7 4.9E-05 1.1E-09 71.5 -5.7 78 556-636 40-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.3E-08 62.7 3.0 113 52-169 38-150 (260)
70 KOG2123 Uncharacterized conser 96.5 0.00013 2.8E-09 68.8 -4.9 86 6-96 17-102 (388)
71 TIGR00864 PCC polycystin catio 95.3 0.0079 1.7E-07 74.8 2.1 71 612-700 1-71 (2740)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.5E-07 32.9 0.9 12 608-619 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.5 0.014 3.1E-07 32.4 0.7 21 583-604 1-21 (22)
74 KOG4308 LRR-containing protein 93.3 0.0026 5.6E-08 68.1 -7.3 63 34-96 89-158 (478)
75 KOG4308 LRR-containing protein 93.0 0.0041 8.8E-08 66.6 -6.3 197 9-228 88-304 (478)
76 KOG3864 Uncharacterized conser 92.5 0.025 5.4E-07 51.4 -1.0 83 9-92 102-186 (221)
77 PF13504 LRR_7: Leucine rich r 92.0 0.096 2.1E-06 27.0 1.3 11 608-618 3-13 (17)
78 KOG3864 Uncharacterized conser 90.3 0.047 1E-06 49.7 -1.5 86 189-274 100-186 (221)
79 PF13516 LRR_6: Leucine Rich r 88.8 0.2 4.4E-06 28.5 0.9 22 7-28 1-22 (24)
80 KOG0473 Leucine-rich repeat pr 88.6 0.018 4E-07 53.2 -5.4 64 578-643 61-124 (326)
81 smart00369 LRR_TYP Leucine-ric 88.1 0.53 1.2E-05 27.3 2.4 21 32-53 2-22 (26)
82 smart00370 LRR Leucine-rich re 88.1 0.53 1.2E-05 27.3 2.4 21 32-53 2-22 (26)
83 smart00370 LRR Leucine-rich re 87.4 0.41 8.9E-06 27.8 1.6 14 606-619 2-15 (26)
84 smart00369 LRR_TYP Leucine-ric 87.4 0.41 8.9E-06 27.8 1.6 14 606-619 2-15 (26)
85 KOG0473 Leucine-rich repeat pr 87.0 0.018 4E-07 53.2 -6.4 88 3-95 37-124 (326)
86 smart00368 LRR_RI Leucine rich 76.1 2.6 5.7E-05 25.0 2.1 20 8-27 2-21 (28)
87 smart00364 LRR_BAC Leucine-ric 68.8 3.5 7.7E-05 23.9 1.4 16 607-623 3-18 (26)
88 KOG4242 Predicted myosin-I-bin 68.7 28 0.00062 36.6 8.7 110 161-277 164-281 (553)
89 smart00365 LRR_SD22 Leucine-ri 68.4 4.4 9.6E-05 23.6 1.8 14 32-45 2-15 (26)
90 smart00367 LRR_CC Leucine-rich 57.0 11 0.00024 21.7 2.1 11 8-18 2-12 (26)
91 KOG3763 mRNA export factor TAP 43.0 9.7 0.00021 40.8 0.6 35 135-169 270-308 (585)
92 smart00082 LRRCT Leucine rich 40.9 5.7 0.00012 27.5 -1.0 40 658-700 2-41 (51)
93 KOG3763 mRNA export factor TAP 29.9 38 0.00083 36.5 2.4 62 29-96 215-284 (585)
94 KOG4242 Predicted myosin-I-bin 26.1 2.2E+02 0.0048 30.4 7.0 18 186-203 436-453 (553)
95 TIGR00864 PCC polycystin catio 23.3 46 0.001 43.5 1.9 32 563-595 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-54 Score=512.54 Aligned_cols=519 Identities=32% Similarity=0.484 Sum_probs=304.7
Q ss_pred CCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccc-cCCCCCcEEEccCcccCCCcchhhccCCCCcc
Q 044924 32 SSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGY-GGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSL 110 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 110 (740)
.+++.|+|++|.+.+.++. .|..+++|++|++++|.+.+. +|..+ ..+++|++|++++|++++..+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p----------- 135 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIP----------- 135 (968)
T ss_pred CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccC-----------
Confidence 3566777777766665544 666777777777777766543 44443 366777777777666543211
Q ss_pred ceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEeccCC-CCCCCcccchhhhhcCC
Q 044924 111 NTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYS-TPGTNSIEILDQGLCSL 189 (740)
Q Consensus 111 ~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~~~l 189 (740)
...+++|++|++++| .+.+.++..+.. +++|++|++++| ..+ .+|..+..+
T Consensus 136 --------------------~~~l~~L~~L~Ls~n--~~~~~~p~~~~~-l~~L~~L~L~~n~l~~-----~~p~~~~~l 187 (968)
T PLN00113 136 --------------------RGSIPNLETLDLSNN--MLSGEIPNDIGS-FSSLKVLDLGGNVLVG-----KIPNSLTNL 187 (968)
T ss_pred --------------------ccccCCCCEEECcCC--cccccCChHHhc-CCCCCEEECccCcccc-----cCChhhhhC
Confidence 112444555555555 333333333333 445555555443 211 122445555
Q ss_pred CCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCcccee
Q 044924 190 MHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIF 269 (740)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 269 (740)
++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~-------------- 252 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPI-------------- 252 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceecccc--------------
Confidence 5666666666666555566666666666666666666555554 5556666666666655554321
Q ss_pred eccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecC
Q 044924 270 DAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVN 349 (740)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 349 (740)
|..+..+++|+.|++++|.+.+.+|..+ .++++|++|++++
T Consensus 253 --------------------------------------p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~ 293 (968)
T PLN00113 253 --------------------------------------PSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSD 293 (968)
T ss_pred --------------------------------------ChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcC
Confidence 2333334444444444444444444332 2444455555555
Q ss_pred CCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCccccccc
Q 044924 350 DSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEI 429 (740)
Q Consensus 350 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 429 (740)
|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+
T Consensus 294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 5444444444455555555555555555555544443 555666666666665555555556666666666666655555
Q ss_pred chhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCC
Q 044924 430 PEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 509 (740)
Q Consensus 430 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 509 (740)
|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..|..++.|+.|++++|.+.+.++..+..+
T Consensus 373 p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 373 PEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred ChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 55543 35566666666666665566666666666666666666665566666666666666666666666666555666
Q ss_pred CCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCcceEEE
Q 044924 510 KGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLD 588 (740)
Q Consensus 510 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 588 (740)
++|+.|++++|.+.+.+|..+ ..++|+.|++++|++.+..|..+. +++|+.|++++|.+.+.+|.. +.++++|++|+
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ 529 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLD 529 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-HcCccCCCEEE
Confidence 666666666666665555444 345666666666666666655444 566666666666666666655 67777777777
Q ss_pred ccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCC
Q 044924 589 LSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPC 649 (740)
Q Consensus 589 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~ 649 (740)
|++|.+++.+|..|..+++|++|+|++|++++.+|..+..+++|+.+++++|++.+.+|+.
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 7777777777777777777777777777777777777777777777777777777777753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-52 Score=494.89 Aligned_cols=539 Identities=28% Similarity=0.456 Sum_probs=419.9
Q ss_pred CCCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcE
Q 044924 7 LTNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKS 86 (740)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 86 (740)
..+++.|+|+++.+.+.++.+|..+++|++|+|++|++.+.+|...+..+++|++|++++|.+++. +|. ..+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS-IPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc-cCc--cccCCCCE
Confidence 457999999999999889999999999999999999999889986677999999999999999865 554 56899999
Q ss_pred EEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceE
Q 044924 87 LHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKY 166 (740)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 166 (740)
|++++|.+....+ ..++++++|++|++++| ...+.++..+.+ +++|++
T Consensus 145 L~Ls~n~~~~~~p-----------------------------~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~-l~~L~~ 192 (968)
T PLN00113 145 LDLSNNMLSGEIP-----------------------------NDIGSFSSLKVLDLGGN--VLVGKIPNSLTN-LTSLEF 192 (968)
T ss_pred EECcCCcccccCC-----------------------------hHHhcCCCCCEEECccC--cccccCChhhhh-CcCCCe
Confidence 9999998764211 23566778888888887 555566666666 888888
Q ss_pred EeccCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEE
Q 044924 167 LSLSYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELR 245 (740)
Q Consensus 167 L~L~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 245 (740)
|++++| ..+ .+|..+..+++|+.|++++|.+++.+|..++++++|++|++++|.+.+.+|. .++++++|++|+
T Consensus 193 L~L~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~ 266 (968)
T PLN00113 193 LTLASNQLVG-----QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLF 266 (968)
T ss_pred eeccCCCCcC-----cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEE
Confidence 888876 333 2347788899999999999999988999999999999999999999888877 789999999999
Q ss_pred ccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCc
Q 044924 246 LSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHI 325 (740)
Q Consensus 246 l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 325 (740)
+++|.+.+.. |..+..+++|+.|++++|
T Consensus 267 L~~n~l~~~~----------------------------------------------------p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 267 LYQNKLSGPI----------------------------------------------------PPSIFSLQKLISLDLSDN 294 (968)
T ss_pred CcCCeeeccC----------------------------------------------------chhHhhccCcCEEECcCC
Confidence 9998876432 333444556666666666
Q ss_pred cccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCC
Q 044924 326 KMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSI 405 (740)
Q Consensus 326 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 405 (740)
.+.+.+|.++ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++..
T Consensus 295 ~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 295 SLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred eeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeC
Confidence 6655555543 46666666666666666666666666777777777777777667766555 567777777777777777
Q ss_pred CccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCC
Q 044924 406 PSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKC 485 (740)
Q Consensus 406 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 485 (740)
|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+++..|..+..++.|+.|++++|.+.+.++..+..+
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 77777777777777777777777776553 57777778887777777777777777788888888887777777777777
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEec
Q 044924 486 SSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHL 564 (740)
Q Consensus 486 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L 564 (740)
++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++..|..+..+++|++|++++|.+.+.+|..+. +.+|+.|++
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 788888888887777666654 357788888888888777777788888888888888888777776654 778888888
Q ss_pred CCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 044924 565 SKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 644 (740)
Q Consensus 565 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 644 (740)
++|.+++.+|.. |.++++|+.|+|++|++++.+|..+.++++|++|++++|++.+.+|.. +.+..+....+.+|+..+
T Consensus 531 s~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 531 SHNQLSGQIPAS-FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLC 608 (968)
T ss_pred CCCcccccCChh-HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcccc
Confidence 888888777776 888999999999999999999999999999999999999999888865 445556666677776443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-41 Score=337.43 Aligned_cols=385 Identities=25% Similarity=0.313 Sum_probs=347.5
Q ss_pred chhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhh
Q 044924 308 PKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDI 387 (740)
Q Consensus 308 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 387 (740)
+.++.++++|+++.+..|.+. .+|.. .+....+++|++.+|.+.......+..++.|++||++.|.++ .+|...+..
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~ 171 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPA 171 (873)
T ss_pred HHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCC
Confidence 567889999999999999987 56663 344556999999999999988889999999999999999998 888777665
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEE
Q 044924 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWL 467 (740)
Q Consensus 388 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 467 (740)
-.++++|+|++|.|+..-...|.++.+|.+|.|+.|+++ .+|...|..+++|+.|+|..|+|.....-.|.++++|+.|
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 678999999999999887889999999999999999988 8999999899999999999999987767889999999999
Q ss_pred EcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
.+..|.+...-...|..+.++++|+++.|++...-..++.++++|+.|++++|.|..+.++.++.+++|+.|+|++|+++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 99999999777889999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred CCCCcccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCC---ccccCcCCCcEEEcCCCcCcccCC
Q 044924 548 GSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIP---NWVDGLSQLRHLILGHNNLEGEVP 623 (740)
Q Consensus 548 ~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~p 623 (740)
...++.|. +..|++|+|++|.+. .+..++|..+.+|++|||++|.+.+.+. ..|.++++|+.|+|.+|++..+..
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 88888887 899999999999998 6777789999999999999999987665 457889999999999999996777
Q ss_pred ccccCCCCCCEEeCCCCccccCCCCCCCcccccc------cccCCCCCcccccccccccccccccceeEEEecccccccc
Q 044924 624 VQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHE------SYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATL 697 (740)
Q Consensus 624 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 697 (740)
..|.++++|++|||.+|++-..-|..|..+.+++ .+.|+|.++|+..|+.... .+......|.+|+.+++.
T Consensus 410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~---lq~sv~a~CayPe~Lad~ 486 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRK---LQSSVIAKCAYPEPLADQ 486 (873)
T ss_pred hhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcc---cccceeeeccCCcccccc
Confidence 7999999999999999999988899998876544 4679999999999987543 456678899999999999
Q ss_pred CCC
Q 044924 698 TLN 700 (740)
Q Consensus 698 ~~~ 700 (740)
.+.
T Consensus 487 ~i~ 489 (873)
T KOG4194|consen 487 SIV 489 (873)
T ss_pred eeE
Confidence 876
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-37 Score=311.21 Aligned_cols=439 Identities=22% Similarity=0.243 Sum_probs=333.8
Q ss_pred CCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCccceee
Q 044924 191 HMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFD 270 (740)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 270 (740)
.-+.|++++|++....+..|.++++|+.+++.+|.++ .||. ..+...+|+.|+|.+|.++. +....+..
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~s-v~se~L~~-------- 147 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISS-VTSEELSA-------- 147 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeecccccc-ccHHHHHh--------
Confidence 4566888888888777788888888888888888887 7776 33334458888888887762 33333333
Q ss_pred ccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCC
Q 044924 271 AYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVND 350 (740)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (740)
++.|+++|++.|.+. .++..-|..-.++++|++++|
T Consensus 148 -------------------------------------------l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N 183 (873)
T KOG4194|consen 148 -------------------------------------------LPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASN 183 (873)
T ss_pred -------------------------------------------Hhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccc
Confidence 455555555555544 233222334457888899999
Q ss_pred CCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccc
Q 044924 351 SLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIP 430 (740)
Q Consensus 351 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 430 (740)
.++......|..+.+|.+|.++.|.++ .+|...|+.+++|+.|+|..|.|.-.-...|.++++|+.|.+..|++. .+.
T Consensus 184 ~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~ 261 (873)
T KOG4194|consen 184 RITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLD 261 (873)
T ss_pred cccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-ccc
Confidence 888888888899999999999999999 899999988999999999999987444668999999999999999987 788
Q ss_pred hhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCC
Q 044924 431 EHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLK 510 (740)
Q Consensus 431 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 510 (740)
+.+|.++.++++|+|+.|+++..-..++.+++.|+.|+++.|.|..+-+..+..+++|++|++++|.+...-+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 88888999999999999999998899999999999999999999988889999999999999999999988888999999
Q ss_pred CCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcc---cc-ccCccEEecCCccccccccccccccCCcceE
Q 044924 511 GLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSC---FH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVT 586 (740)
Q Consensus 511 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 586 (740)
.|+.|.|++|.+...-...|..+++|+.|||++|.+...+.+. |. +++|+.|.|.+|++. .++..+|.+++.|+.
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccce
Confidence 9999999999999777778999999999999999998765443 33 788888888888888 677777888888888
Q ss_pred EEccCCcCCCCCCccccCcCCCcEEEcCCCcCcc-----cCCccccCCCCCCEEeCCCCccccCCCCCCCcccccc----
Q 044924 587 LDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG-----EVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHE---- 657 (740)
Q Consensus 587 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~---- 657 (740)
|||.+|.|....|+.|..+ .|++|.+..-.+.- .+++.+.. ..++. .=.-.|.-|+.+......+
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~-~~lq~----sv~a~CayPe~Lad~~i~svd~~ 494 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR-RKLQS----SVIAKCAYPEPLADQSIVSVDTA 494 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHh-ccccc----ceeeeccCCcccccceeEeechh
Confidence 8888888888888888887 88888776544320 12222221 11111 1112334555555444322
Q ss_pred cccCCCCCcccccccccccccccccceeEEEecccc
Q 044924 658 SYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSS 693 (740)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 693 (740)
.+-|+...++-...-..+..++.+.+-..+|...+.
T Consensus 495 ~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~ss 530 (873)
T KOG4194|consen 495 NLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSS 530 (873)
T ss_pred hceecCCCCcceecCchHhhhhhccceEEEEEeccC
Confidence 234665555544443344444456666777755443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=296.12 Aligned_cols=457 Identities=25% Similarity=0.400 Sum_probs=325.9
Q ss_pred CCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhh
Q 044924 131 FPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCL 210 (740)
Q Consensus 131 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l 210 (740)
+.++..|.++++.++.. ...+..++. +..+..++.+. +.+..+|+.+..+++++.++++.|.+. ..++.+
T Consensus 64 l~nL~~l~vl~~~~n~l---~~lp~aig~-l~~l~~l~vs~-----n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i 133 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKL---SQLPAAIGE-LEALKSLNVSH-----NKLSELPEQIGSLISLVKLDCSSNELK-ELPDSI 133 (565)
T ss_pred hhcccceeEEEeccchh---hhCCHHHHH-HHHHHHhhccc-----chHhhccHHHhhhhhhhhhhcccccee-ecCchH
Confidence 44555555555555522 222333333 44455555554 345556666777777777777777666 456666
Q ss_pred hcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCcc
Q 044924 211 ANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNF 290 (740)
Q Consensus 211 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 290 (740)
+.+..++.++..+|+++ ..|. .+.++.+|..+++.+|.++ ..+..... |..|+.+++..|-+
T Consensus 134 ~~~~~l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L-------------- 195 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLL-------------- 195 (565)
T ss_pred HHHhhhhhhhccccccc-cCch-HHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhh--------------
Confidence 77777777777777776 5555 5666777777777777665 23333333 66666666555443
Q ss_pred ccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEE
Q 044924 291 QLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLD 370 (740)
Q Consensus 291 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 370 (740)
.++|..++.+..|..|++..|++. .+|+ |..|..|+++++..|.+..........++++.+||
T Consensus 196 --------------~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 196 --------------ETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred --------------hcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 356777778888888888888876 5564 56888899999988888766555666889999999
Q ss_pred cccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCC--CCcEEe----
Q 044924 371 VSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCV--NLEYLT---- 444 (740)
Q Consensus 371 l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~---- 444 (740)
+.+|+++ ++|.+++- +.+|++|++++|.++ ..|..++++ .|+.|.+.||.+. .+-..+...-+ -|++|.
T Consensus 259 LRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred ccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhc
Confidence 9999998 89999886 788999999999998 577789999 9999999999865 44333322110 022221
Q ss_pred ---CCCC---ccc-Cc----CccccCCCCCCCEEEcccCcCcccCCccccCC---CCCCEEEccCCcCCCCCcccccCCC
Q 044924 445 ---LSNN---NLE-GH----MFTRNFNLTNLRWLQLESNHFVGEIPQSLSKC---SSLEGLYLNNNSLSGKIPRWLGNLK 510 (740)
Q Consensus 445 ---l~~n---~l~-~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~ 510 (740)
++.- .-+ .. .........+.+.|++++-+++ .+|...... .-....+++.|++. .+|..+..+.
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lk 411 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELK 411 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHH
Confidence 1110 000 00 1112234567889999998888 666543332 23788999999998 6787776666
Q ss_pred CCce-ecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEc
Q 044924 511 GLKH-IIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDL 589 (740)
Q Consensus 511 ~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 589 (740)
.+.+ +.+++|.+. -+|..++++++|..|++++|.+...+-+.+.+..|+.|+++.|.+. .+|.. ......++.+-.
T Consensus 412 elvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~-~y~lq~lEtlla 488 (565)
T KOG0472|consen 412 ELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPEC-LYELQTLETLLA 488 (565)
T ss_pred HHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHH-HhhHHHHHHHHh
Confidence 6544 556666554 7888999999999999999988866667777889999999999987 66765 566667777888
Q ss_pred cCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 044924 590 SYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 590 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 643 (740)
++|++....|..+.+|.+|.+|||.+|.+. .+|..+++|.+|++|++++|++.
T Consensus 489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 889999777777999999999999999999 89999999999999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.3e-35 Score=281.32 Aligned_cols=478 Identities=25% Similarity=0.333 Sum_probs=327.8
Q ss_pred CCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEE
Q 044924 8 TNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSL 87 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 87 (740)
.-|..|++++|.++. +.+.+..+..|.+|++++|++. ..|+ +++.+..++.++.+.|.++. .|+.+..+..|++|
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhh
Confidence 346778888888774 4556888899999999999987 5776 88999999999999998876 58888999999999
Q ss_pred EccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEE
Q 044924 88 HLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYL 167 (740)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 167 (740)
++++|++....+.. +.+..+..++...|++.+... .+.++.+|..+++.++. ....-++.+. ++.|+.|
T Consensus 120 ~~s~n~~~el~~~i---~~~~~l~dl~~~~N~i~slp~----~~~~~~~l~~l~~~~n~--l~~l~~~~i~--m~~L~~l 188 (565)
T KOG0472|consen 120 DCSSNELKELPDSI---GRLLDLEDLDATNNQISSLPE----DMVNLSKLSKLDLEGNK--LKALPENHIA--MKRLKHL 188 (565)
T ss_pred hccccceeecCchH---HHHhhhhhhhccccccccCch----HHHHHHHHHHhhccccc--hhhCCHHHHH--HHHHHhc
Confidence 99998887654433 356677777777777665433 36677778888888773 3332233332 6777888
Q ss_pred eccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEcc
Q 044924 168 SLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLS 247 (740)
Q Consensus 168 ~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 247 (740)
|... |.+..+|+.++.+.+|.-|+|..|++. ..| .|+.|..|+.+.++.|.+. .+|.....++++|.+||+.
T Consensus 189 d~~~-----N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 189 DCNS-----NLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred ccch-----hhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 7766 335556678888888888888888876 455 6778888888888888776 6676566678888888888
Q ss_pred CCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccc
Q 044924 248 DNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKM 327 (740)
Q Consensus 248 ~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 327 (740)
+|+++. .+ +.+--+.+|++||+++|.++ .+|..++++ .|+.|-+.+|.+
T Consensus 261 dNklke-~P-de~clLrsL~rLDlSNN~is----------------------------~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 261 DNKLKE-VP-DEICLLRSLERLDLSNNDIS----------------------------SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccccc-Cc-hHHHHhhhhhhhcccCCccc----------------------------cCCcccccc-eeeehhhcCCch
Confidence 888763 22 34445667777777777664 346666777 788888888875
Q ss_pred cCC---c----chHHhhcCCC-CCEEEecCCCC---CC-----CCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCC--
Q 044924 328 NGG---F----PNWLLENNTR-LETLSLVNDSL---AG-----PFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILP-- 389 (740)
Q Consensus 328 ~~~---~----~~~~~~~~~~-L~~L~l~~~~~---~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-- 389 (740)
... + -..+...+.+ .+.=.++...- +. ..........+.+.|++++-+++ .+|...|+.-.
T Consensus 310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~ 388 (565)
T KOG0472|consen 310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSE 388 (565)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhc
Confidence 421 0 0011111110 00001111100 00 01122345567788888888888 88888877432
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEE-eccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEE
Q 044924 390 SLISFNISMNALNGSIPSSFGNINSLQIL-DLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQ 468 (740)
Q Consensus 390 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 468 (740)
-...++++.|++. .+|..+..+..+.+. .+++|. .+.+|..+. .+++|..|++++|.+.. +|..++.+..|+.++
T Consensus 389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~-isfv~~~l~-~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK-ISFVPLELS-QLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLN 464 (565)
T ss_pred ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc-cccchHHHH-hhhcceeeecccchhhh-cchhhhhhhhhheec
Confidence 2778888888887 677766666555543 444444 435555554 57888888888776654 566677777788888
Q ss_pred cccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 469 LESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 469 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
++.|.+. .+|..+..+..++.+-.++|++....+..+.+|.+|+.||+.+|.+. .+|..+++|++|++|++++|.+.
T Consensus 465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888776 77777777777777777778777555555778888888888888887 67777888888888888888777
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.3e-33 Score=293.11 Aligned_cols=507 Identities=24% Similarity=0.282 Sum_probs=257.4
Q ss_pred EEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEccC
Q 044924 12 MLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSR 91 (740)
Q Consensus 12 ~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~ 91 (740)
.+|++++.++ .+|..+-.-..++.|+++.|-+. ..|...+....+|+.||+++|.+..+ |..+..+++|+.|+++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~f--p~~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSF--PIQITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccC--CchhhhHHHHhhcccch
Confidence 4678888766 44555555455999999999876 45565677788899999999998874 88889999999999999
Q ss_pred cccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEeccC
Q 044924 92 VGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSY 171 (740)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 171 (740)
|.+.... .....+.+++.+.+..+..... +..+..+++|+.|++++|.+ +.++..+.. +..++.+..++
T Consensus 78 n~i~~vp---~s~~~~~~l~~lnL~~n~l~~l----P~~~~~lknl~~LdlS~N~f---~~~Pl~i~~-lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 78 NYIRSVP---SSCSNMRNLQYLNLKNNRLQSL----PASISELKNLQYLDLSFNHF---GPIPLVIEV-LTAEEELAASN 146 (1081)
T ss_pred hhHhhCc---hhhhhhhcchhheeccchhhcC----chhHHhhhcccccccchhcc---CCCchhHHh-hhHHHHHhhhc
Confidence 9877643 2222444455555544433222 12344455555555555422 112222222 33333333333
Q ss_pred CCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcc
Q 044924 172 STPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHF 251 (740)
Q Consensus 172 ~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~ 251 (740)
| ..+. .++... ++.+++..+.+.+.++..+..+.. .|||++|.+. . ..+.++++|+.+....|.+
T Consensus 147 N----~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 147 N----EKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQL 211 (1081)
T ss_pred c----hhhh----hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhccc
Confidence 2 0011 011111 333444444443333333333322 3444444433 1 1233444444444444433
Q ss_pred cccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCc
Q 044924 252 RIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGF 331 (740)
Q Consensus 252 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 331 (740)
. .. .+ ..++++.|+..+|.+....
T Consensus 212 s-------------------------~l----------------~~---------------~g~~l~~L~a~~n~l~~~~ 235 (1081)
T KOG0618|consen 212 S-------------------------EL----------------EI---------------SGPSLTALYADHNPLTTLD 235 (1081)
T ss_pred c-------------------------eE----------------Ee---------------cCcchheeeeccCcceeec
Confidence 2 10 00 1133444444444433211
Q ss_pred chHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccC
Q 044924 332 PNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGN 411 (740)
Q Consensus 332 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 411 (740)
+.. ...+|+.++++++.+.+.. ..+..+.+|+.++..+|.++ .+|..++. ..+|+.|.+.+|.+. .+|....+
T Consensus 236 ~~p---~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~ 308 (1081)
T KOG0618|consen 236 VHP---VPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEG 308 (1081)
T ss_pred ccc---ccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccc
Confidence 110 1223444444444444332 44445555555566666664 56665554 456666666666665 45555666
Q ss_pred CCCCcEEeccCcccccccchhhhhcCCC-CcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCE
Q 044924 412 INSLQILDLSNNQLIGEIPEHLAVGCVN-LEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEG 490 (740)
Q Consensus 412 l~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 490 (740)
++.|++|++..|.+. .+|+.++.-... |..|+.+.|.+.......-...+ .|+.
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~------------------------~Lq~ 363 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA------------------------ALQE 363 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhH------------------------HHHH
Confidence 667777777776654 566654433222 45555555544432211111233 3445
Q ss_pred EEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcccc
Q 044924 491 LYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLR 570 (740)
Q Consensus 491 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~ 570 (740)
|++.+|.+++..-+.+.++.+|+.|+|++|++.......+.++..|+.|++++|+++........+..|++|...+|.+.
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee
Confidence 55555555444444444555555555555555433333444555555555555555433322233444555555555544
Q ss_pred ccccccccccCCcceEEEccCCcCCC-CCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCC
Q 044924 571 GQLKRGTFFNCSSLVTLDLSYNRLNG-SIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNN 640 (740)
Q Consensus 571 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 640 (740)
.+| . +..++.|+.+|++.|+++. .+|..... ++|++|||++|.-...--..|..+.++..+++.-+
T Consensus 444 -~fP-e-~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 444 -SFP-E-LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred -ech-h-hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 455 2 5666677777777766653 22333322 66777777777644344455555666666665544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5.1e-32 Score=272.87 Aligned_cols=330 Identities=25% Similarity=0.342 Sum_probs=253.0
Q ss_pred cchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCC-CCCCCCCCCCCccEEEcccCcCCCcCchhHh
Q 044924 307 FPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAG-PFRLPIHSHKQLRLLDVSNNNFQGHIPVEIG 385 (740)
Q Consensus 307 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 385 (740)
+|..++.+.+|+.|.+++|++.....+ ...++.|+.+.+..|.+.. .+|..+..+..|+.||+++|++. ++|..+-
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~~vhGE--Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE 123 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLISVHGE--LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE 123 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhHhhhhh--hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh
Confidence 355555556666666666654422221 2355666666666666543 45666677777888888888887 7777765
Q ss_pred hhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCC
Q 044924 386 DILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLR 465 (740)
Q Consensus 386 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 465 (740)
. .+++-.|+|++|+|..+....|.++..|-+||+++|++. .+|..+. .+..|++|+|++|++.......+..+++|+
T Consensus 124 ~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 124 Y-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred h-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 4 467788888888887544456777888888888888865 6777665 478888888888877655555566677888
Q ss_pred EEEcccCcCc-ccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccC
Q 044924 466 WLQLESNHFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544 (740)
Q Consensus 466 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 544 (740)
.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+..+++|+.|++++|+++ .+....+.+.+|++|+++.|
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccc
Confidence 8888887654 357778888888888888888887 77888888888888888888888 55666777888888899998
Q ss_pred cCCCCCCccccccCccEEecCCccccc-cccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCC
Q 044924 545 NISGSLPSCFHLLSIEQVHLSKNMLRG-QLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVP 623 (740)
Q Consensus 545 ~l~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 623 (740)
+++..+...-.++.|+.|.+.+|+++. -+|.+ ++.+.+|+.+..++|.+. ..|+.++.|..|+.|.|++|++. .+|
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP 355 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP 355 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech
Confidence 888554444558888888888888773 46776 999999999999999998 89999999999999999999999 899
Q ss_pred ccccCCCCCCEEeCCCCccccCCC
Q 044924 624 VQLCGLNQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 624 ~~~~~l~~L~~L~l~~n~~~~~~p 647 (740)
+.+.-++-|+.||+..|+-....|
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999998875554
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=4.4e-32 Score=286.27 Aligned_cols=440 Identities=28% Similarity=0.323 Sum_probs=333.9
Q ss_pred CCceeecccchhhcchhhhHHhhhcCCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCC
Q 044924 136 SLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTS 215 (740)
Q Consensus 136 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 215 (740)
.|++|++++|.+ +.++..+.. +++|+.|+++. |.+...|.+...+.+|+.+.|.+|.+. ..|..+..+++
T Consensus 46 ~L~~l~lsnn~~---~~fp~~it~-l~~L~~ln~s~-----n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lkn 115 (1081)
T KOG0618|consen 46 KLKSLDLSNNQI---SSFPIQITL-LSHLRQLNLSR-----NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKN 115 (1081)
T ss_pred eeEEeecccccc---ccCCchhhh-HHHHhhcccch-----hhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhc
Confidence 388888888743 445555554 77888888877 446666678888899999999988877 77888999999
Q ss_pred CcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCcccccee
Q 044924 216 LRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHL 295 (740)
Q Consensus 216 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 295 (740)
|++||++.|.+. .+|. .+..++.++.+..++|..... ++... .+.+++..|.+.
T Consensus 116 l~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~~l~~n~l~------------------ 169 (1081)
T KOG0618|consen 116 LQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQR-----LGQTS-IKKLDLRLNVLG------------------ 169 (1081)
T ss_pred ccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhh-----hcccc-chhhhhhhhhcc------------------
Confidence 999999999887 7777 677888888888888822111 11111 444555444432
Q ss_pred eeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCc
Q 044924 296 SLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNN 375 (740)
Q Consensus 296 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 375 (740)
..++.....+.. .+++++|.+. ... ..++..|+.+....+.+.... ..-++++.|+.++|.
T Consensus 170 ---------~~~~~~i~~l~~--~ldLr~N~~~--~~d--ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 170 ---------GSFLIDIYNLTH--QLDLRYNEME--VLD--LSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNP 230 (1081)
T ss_pred ---------cchhcchhhhhe--eeecccchhh--hhh--hhhccchhhhhhhhcccceEE----ecCcchheeeeccCc
Confidence 233444444444 6889988876 111 246778888888777765422 234678999999999
Q ss_pred CCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCc
Q 044924 376 FQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMF 455 (740)
Q Consensus 376 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 455 (740)
++...+... ..+|+++++++|.++ .+|+|+..+.+|+.++..+|+++ .+|...+ ...+|+.|.+..|.+.. +|
T Consensus 231 l~~~~~~p~---p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~y-ip 303 (1081)
T KOG0618|consen 231 LTTLDVHPV---PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELEY-IP 303 (1081)
T ss_pred ceeeccccc---cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhhh-CC
Confidence 873222221 358999999999998 56799999999999999999986 8888876 58899999999999875 55
Q ss_pred cccCCCCCCCEEEcccCcCcccCCcc-ccCCCC-CCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCC
Q 044924 456 TRNFNLTNLRWLQLESNHFVGEIPQS-LSKCSS-LEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQL 533 (740)
Q Consensus 456 ~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 533 (740)
.......+|++|++..|.+. ..|.. +..... |+.|+.+.|.+.......=..+..|+.|++.+|.+++..-..+.++
T Consensus 304 ~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred Ccccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 66677999999999999998 55543 333333 7778888887763322222246789999999999998887889999
Q ss_pred CCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEE
Q 044924 534 YSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLI 612 (740)
Q Consensus 534 ~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 612 (740)
++|+.|+|++|++...++.++. +..|+.|+|++|+++ .+|.. ..+++.|++|....|++. ..| .+.+++.|+.+|
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t-va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT-VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH-HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 9999999999999866555555 889999999999999 67755 899999999999999998 677 799999999999
Q ss_pred cCCCcCccc-CCccccCCCCCCEEeCCCCccc
Q 044924 613 LGHNNLEGE-VPVQLCGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 613 L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~ 643 (740)
++.|+++.. +|..... ++|++||+++|.+.
T Consensus 459 lS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred cccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 999999743 4443332 89999999999874
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-31 Score=269.08 Aligned_cols=383 Identities=25% Similarity=0.364 Sum_probs=269.5
Q ss_pred CCCcEEeccCCcccc-CCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCccce
Q 044924 190 MHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQI 268 (740)
Q Consensus 190 ~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 268 (740)
|-.+-+++++|.++| .+|.....+++++.|.|....+. .+|. .++.+.+|++|.+++|++... ...+..++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~v--hGELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLISV--HGELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHhh--hhhhccchhhHH
Confidence 344555566666553 34555666666666666666554 4555 566666666666666655421 123334444444
Q ss_pred eeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEec
Q 044924 269 FDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLV 348 (740)
Q Consensus 269 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 348 (740)
+.+.+|.+.. ..+|..++.+..|..||+++|++. +.|.
T Consensus 83 v~~R~N~LKn--------------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~--------------- 120 (1255)
T KOG0444|consen 83 VIVRDNNLKN--------------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPT--------------- 120 (1255)
T ss_pred Hhhhcccccc--------------------------CCCCchhcccccceeeecchhhhh-hcch---------------
Confidence 4444443321 134566666666777777776655 3333
Q ss_pred CCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccc
Q 044924 349 NDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428 (740)
Q Consensus 349 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 428 (740)
.+..-+++-+|++++|+|. .||..++-.+..|-.|+|++|.+. .+|..+..+..|++|++++|.+. .
T Consensus 121 ----------~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-h 187 (1255)
T KOG0444|consen 121 ----------NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-H 187 (1255)
T ss_pred ----------hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-H
Confidence 2333445667788888887 888888877788888888888887 66777788888888888888654 1
Q ss_pred cchhhhhcCCCCcEEeCCCCccc-CcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCccccc
Q 044924 429 IPEHLAVGCVNLEYLTLSNNNLE-GHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 507 (740)
Q Consensus 429 ~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 507 (740)
..-.-...+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|+++.++++|+.|++++|.++ .+....+
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~ 265 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG 265 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH
Confidence 11111113566778888877554 447888888999999999999887 88888999999999999999887 4444556
Q ss_pred CCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC--CCCCccccccCccEEecCCccccccccccccccCCcce
Q 044924 508 NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS--GSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLV 585 (740)
Q Consensus 508 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 585 (740)
...+|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++ |+++....+..|+.+...+|.+. .+|.+ +..|.+|+
T Consensus 266 ~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg-lcRC~kL~ 342 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG-LCRCVKLQ 342 (1255)
T ss_pred HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh-hhhhHHHH
Confidence 6788999999999998 78899999999999999999875 45555556888999999999886 67777 99999999
Q ss_pred EEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeC
Q 044924 586 TLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDL 637 (740)
Q Consensus 586 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 637 (740)
.|.|+.|++- .+|+.+.-++.|+.||+..|.-.-..|.--..-++|+.-+|
T Consensus 343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred Hhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 9999999988 78999999999999999999877344433222245555444
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5e-22 Score=236.02 Aligned_cols=347 Identities=20% Similarity=0.250 Sum_probs=257.9
Q ss_pred ccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccC-CCccEEEccCccccCCcchHH
Q 044924 257 LEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQ-HDLVNVDLSHIKMNGGFPNWL 335 (740)
Q Consensus 257 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~ 335 (740)
..+|..|.+|+.|.+..+..... ......+|..+..+ ++|+.|.+.++.+. .+|..+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~---------------------~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f 608 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQK---------------------KEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF 608 (1153)
T ss_pred HHHHhcCccccEEEEeccccccc---------------------ccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence 34566778888887765543210 00111234444443 45888888887764 566654
Q ss_pred hhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCC
Q 044924 336 LENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSL 415 (740)
Q Consensus 336 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 415 (740)
...+|++|++.++.+.. .+..+..+++|+.++++++.....+|. +. .+++|++|++++|.....+|..+.++++|
T Consensus 609 --~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 609 --RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred --CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCC
Confidence 56788899998888764 345567888999999988765446775 22 37889999999987666788888999999
Q ss_pred cEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccC
Q 044924 416 QILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNN 495 (740)
Q Consensus 416 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 495 (740)
+.|++++|...+.+|... .+++|++|++++|......|.. ..+|++|++++|.+. .+|..+ .+++|++|++.+
T Consensus 684 ~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE 756 (1153)
T ss_pred CEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence 999999886666788755 5889999999998765555432 467899999999886 566554 577888888877
Q ss_pred CcCC-------CCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcc
Q 044924 496 NSLS-------GKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNM 568 (740)
Q Consensus 496 n~~~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 568 (740)
+... ...+..+...++|+.|++++|.....+|..++++++|+.|++++|...+.+|....+++|+.|++++|.
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCS 836 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCC
Confidence 5422 111222334578999999999877788999999999999999998766667776678899999999987
Q ss_pred ccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 044924 569 LRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNL 642 (740)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 642 (740)
....+|.. .++|+.|+|++|.+. .+|.++..+++|++|++++|+-...+|..+..+++|+.+++++|.-
T Consensus 837 ~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 837 RLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 65555432 368999999999998 6888899999999999999765557888888999999999999853
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=2.9e-25 Score=213.22 Aligned_cols=319 Identities=20% Similarity=0.189 Sum_probs=224.7
Q ss_pred CCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccC-cccccccchhhhhcCCCCc
Q 044924 363 HKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSN-NQLIGEIPEHLAVGCVNLE 441 (740)
Q Consensus 363 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~ 441 (740)
.+....+++..|+|+ .+|...|..+++|++|+|++|.|+.+.|.+|.+++.+..|-+.+ |+|+ .+|...|.++..++
T Consensus 66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 345677889999998 89998888899999999999999999999999999988887766 7776 89999999999999
Q ss_pred EEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCc
Q 044924 442 YLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENH 521 (740)
Q Consensus 442 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 521 (740)
.|.+.-|++.....++|..+++|..|.+.+|.+...-..+|..+..++.+.+..|.+.. ..+++.+....-
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a---- 214 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLA---- 214 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHh----
Confidence 99999999998888999999999999999999884444588889999999988887431 122222221111
Q ss_pred ccCCCchhhhCCCCCcEEEcccCcCCCCCCcccccc--CccEEecCCccccccccccccccCCcceEEEccCCcCCCCCC
Q 044924 522 LEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLL--SIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 599 (740)
Q Consensus 522 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 599 (740)
..|..++..+......+.+.++....+..|... ++..-..+.+...+.-|..+|..+++|++|+|++|+++.+-+
T Consensus 215 ---~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 215 ---MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred ---hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 122223333333333344444443333333321 222212223333335555567777777777777777776667
Q ss_pred ccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCccc-------ccccccCCCCCccccccc
Q 044924 600 NWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTT-------LHESYSNSSSLKPFETSL 672 (740)
Q Consensus 600 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~ 672 (740)
.+|.++..+++|.|..|++...-...|.++..|+.|+|++|+++..-|..|+... +.+.+.|+|.+.|+..|+
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 7777777777777777777655566667777777777777777766666665543 234566999999999998
Q ss_pred ccccccccccceeEEEeccccccccCCC
Q 044924 673 VMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
.... ....+.|..|..+.+.++.
T Consensus 372 r~~~-----~~~~~~Cq~p~~~~~~~~~ 394 (498)
T KOG4237|consen 372 RKKS-----VVGNPRCQSPGFVRQIPIS 394 (498)
T ss_pred hhCC-----CCCCCCCCCCchhccccch
Confidence 7654 2357789999999999887
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=6.6e-21 Score=226.52 Aligned_cols=83 Identities=31% Similarity=0.278 Sum_probs=34.6
Q ss_pred CCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcE
Q 044924 314 QHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLIS 393 (740)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 393 (740)
+++|+.++++++.....+|. +..+++|+.|++.+|.....++..+..+++|+.|++++|.....+|... .+++|+.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~ 708 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYR 708 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCE
Confidence 34444444444433333332 2334444444444444333334444444444444444443222344332 1344444
Q ss_pred EEccCCc
Q 044924 394 FNISMNA 400 (740)
Q Consensus 394 L~l~~n~ 400 (740)
|++++|.
T Consensus 709 L~Lsgc~ 715 (1153)
T PLN03210 709 LNLSGCS 715 (1153)
T ss_pred EeCCCCC
Confidence 4444443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-23 Score=200.45 Aligned_cols=89 Identities=29% Similarity=0.321 Sum_probs=44.8
Q ss_pred cccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCC
Q 044924 408 SFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSS 487 (740)
Q Consensus 408 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 487 (740)
.|..+++|+.|++++|+++ .+.+..|.+...+++|.|..|++.......|.++..|+.|++++|+++...|.+|..+.+
T Consensus 269 cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 3445555555555555544 344444444555555555555554444444445555555555555555445555555555
Q ss_pred CCEEEccCCc
Q 044924 488 LEGLYLNNNS 497 (740)
Q Consensus 488 L~~L~l~~n~ 497 (740)
|.+|++-.|+
T Consensus 348 l~~l~l~~Np 357 (498)
T KOG4237|consen 348 LSTLNLLSNP 357 (498)
T ss_pred eeeeehccCc
Confidence 5555554443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=2.7e-19 Score=196.77 Aligned_cols=264 Identities=25% Similarity=0.297 Sum_probs=173.1
Q ss_pred CCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEec
Q 044924 341 RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDL 420 (740)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 420 (740)
+-..|+++.+.++. +|..+. ++|+.|++.+|+++ .+|.. .++|++|++++|.++ .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 44556666666653 233332 35677777777776 45542 467777777777776 34432 356777777
Q ss_pred cCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCC
Q 044924 421 SNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSG 500 (740)
Q Consensus 421 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 500 (740)
++|.+. .+|.. ..+|+.|++++|.++.. |. ..++|+.|++++|.+++ +|.. ..+|+.|++++|.+.+
T Consensus 270 s~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 270 FSNPLT-HLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred cCCchh-hhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 777665 45541 34577777777777643 32 24667777777777763 4432 2356777777777763
Q ss_pred CCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcccccccccccccc
Q 044924 501 KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFN 580 (740)
Q Consensus 501 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 580 (740)
+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++.. +|.. ..+|+.|++++|.+. .+|..
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N~Lt-~LP~l---- 400 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLT-SLPVL---- 400 (788)
T ss_pred -cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc--ccccceEEecCCccc-CCCCc----
Confidence 4431 2467788888887774 4432 3467777888887774 3432 356788888888877 35542
Q ss_pred CCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCC
Q 044924 581 CSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCF 650 (740)
Q Consensus 581 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~ 650 (740)
.++|+.|++++|.+++ +|... .+|+.|++++|+++ .+|..++.+++|+.|++++|++++..|..+
T Consensus 401 ~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2578888888888874 56533 46788888888888 788888888888888888888887766554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4e-19 Score=195.38 Aligned_cols=265 Identities=25% Similarity=0.305 Sum_probs=209.8
Q ss_pred CCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEE
Q 044924 315 HDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISF 394 (740)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 394 (740)
.+-..|+++++.+. .+|..+. +.|+.|.+.+|.++.... .+++|+.|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc----cccccee
Confidence 45678899999887 6777553 479999999999886432 3578999999999998 67753 4689999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcC
Q 044924 395 NISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF 474 (740)
Q Consensus 395 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 474 (740)
++++|.++ .+|.. ...|+.|++++|++. .+|. ..++|+.|++++|++++. |.. ..+|+.|++++|.+
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQL 334 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccC-CCC---cccccccccccCcc
Confidence 99999987 45543 367889999999987 6665 257899999999999864 332 34688899999999
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccc
Q 044924 475 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF 554 (740)
Q Consensus 475 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 554 (740)
+ .+|.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|++.+ +|..
T Consensus 335 ~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l- 400 (788)
T PRK15387 335 T-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL- 400 (788)
T ss_pred c-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc-
Confidence 8 45542 2579999999999984 5543 3678899999999984 5643 3579999999999985 3432
Q ss_pred cccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccc
Q 044924 555 HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQL 626 (740)
Q Consensus 555 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 626 (740)
..+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..|..+
T Consensus 401 -~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 -PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 368999999999998 46643 257889999999998 789999999999999999999998877765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5.1e-18 Score=188.18 Aligned_cols=246 Identities=28% Similarity=0.392 Sum_probs=124.7
Q ss_pred CCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEec
Q 044924 341 RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDL 420 (740)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 420 (740)
+.+.|++++++++.. |..+ .+.++.|++++|.++ .+|..++ ++|++|++++|.++ .+|..+. +.|+.|++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 456677776666542 2222 245667777777766 5665543 36677777777666 3444332 35666667
Q ss_pred cCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCC
Q 044924 421 SNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSG 500 (740)
Q Consensus 421 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 500 (740)
++|.+. .+|..+. .+|++|++++|++.. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+..
T Consensus 249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc
Confidence 666655 5555442 356666666666653 333322 35566666666555 2333222 245555555555542
Q ss_pred CCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcccccccccccccc
Q 044924 501 KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFN 580 (740)
Q Consensus 501 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 580 (740)
+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|++. .+|.. +
T Consensus 319 -LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~------------------------~LP~~-l-- 365 (754)
T PRK15370 319 -LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT------------------------VLPET-L-- 365 (754)
T ss_pred -CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC------------------------cCChh-h--
Confidence 232221 345555555555542 333321 34555555555444 23332 2
Q ss_pred CCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccc----cCCCCCCEEeCCCCccc
Q 044924 581 CSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQL----CGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 581 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~l~~n~~~ 643 (740)
.++|+.|+|++|.++ .+|..+. .+|+.|++++|++. .+|..+ ..++.+..+++.+|+++
T Consensus 366 p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 135555555555555 2333332 24555566666555 334332 22355556666666554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=8e-17 Score=178.72 Aligned_cols=293 Identities=19% Similarity=0.334 Sum_probs=206.5
Q ss_pred CCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEE
Q 044924 315 HDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISF 394 (740)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 394 (740)
.+...|+++++.+. .+|..+ .+.++.|++++|.+.... ..+ .++|+.|++++|.++ .+|..+. ++|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP-~~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLP-ENL--QGNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCC-hhh--ccCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 45788999998877 566543 357999999999998643 322 358999999999998 7887654 479999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcC
Q 044924 395 NISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF 474 (740)
Q Consensus 395 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 474 (740)
++++|.+. .+|..+. .+|+.|++++|++. .+|..+ .++|++|++++|+++.. |..+ .++|+.|++++|.+
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSL 316 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcc
Confidence 99999998 5676654 58999999999987 688755 35899999999999863 4333 25799999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccc
Q 044924 475 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF 554 (740)
Q Consensus 475 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 554 (740)
+ .+|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|+++ .+|..+ .++|++|++++|+++..++..
T Consensus 317 t-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l- 386 (754)
T PRK15370 317 T-ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL- 386 (754)
T ss_pred c-cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH-
Confidence 8 4565443 689999999999884 666554 79999999999998 566655 368999999999988544332
Q ss_pred cccCccEEecCCcccccccccc---ccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcc-cCCccccCCC
Q 044924 555 HLLSIEQVHLSKNMLRGQLKRG---TFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG-EVPVQLCGLN 630 (740)
Q Consensus 555 ~~~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~ 630 (740)
..+|+.|++++|++. .+|.. .+..++.+..|+|.+|++.. ..+.+|+.| ++.+.+.| .++...+.++
T Consensus 387 -~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~ 457 (754)
T PRK15370 387 -PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFS 457 (754)
T ss_pred -HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccccc
Confidence 236777888888776 44432 13344677778888887762 233444455 33343332 2333344444
Q ss_pred CCCEEeCCCCccccCCC
Q 044924 631 QLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 631 ~L~~L~l~~n~~~~~~p 647 (740)
.++....-.+...+.+|
T Consensus 458 ~l~~~~~l~~a~~~Wl~ 474 (754)
T PRK15370 458 IVRVTRPLHQAVQGWLT 474 (754)
T ss_pred cccccchHHHHHhccCC
Confidence 44433333333333333
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=2.4e-18 Score=178.25 Aligned_cols=157 Identities=24% Similarity=0.312 Sum_probs=77.3
Q ss_pred CCCCEEEccCCcCCCC----CcccccCCCCCceecccCCcccCC----CchhhhCCCCCcEEEcccCcCCCCCCc----c
Q 044924 486 SSLEGLYLNNNSLSGK----IPRWLGNLKGLKHIIMPENHLEGP----IPMEFCQLYSLQLLDISDNNISGSLPS----C 553 (740)
Q Consensus 486 ~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~----~ 553 (740)
++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.... .
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4555555555554421 122334444555555555555421 122233344555555555554422111 1
Q ss_pred c-cccCccEEecCCcccccccccc----ccccCCcceEEEccCCcCCC----CCCccccCcCCCcEEEcCCCcCccc---
Q 044924 554 F-HLLSIEQVHLSKNMLRGQLKRG----TFFNCSSLVTLDLSYNRLNG----SIPNWVDGLSQLRHLILGHNNLEGE--- 621 (740)
Q Consensus 554 ~-~~~~L~~L~L~~n~~~~~~~~~----~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~--- 621 (740)
+ .+++|+.|++++|.+.+..... .....+.|+.|++++|.++. .+...+..+++|+++++++|.+...
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 1 1344555555555444211111 01123567777777777652 2233445556777777777777633
Q ss_pred -CCccccCC-CCCCEEeCCCCcc
Q 044924 622 -VPVQLCGL-NQLQLLDLSNNNL 642 (740)
Q Consensus 622 -~p~~~~~l-~~L~~L~l~~n~~ 642 (740)
....+... +.|+.+++.+|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 33344444 6777777777764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=6.4e-19 Score=150.10 Aligned_cols=182 Identities=28% Similarity=0.454 Sum_probs=137.4
Q ss_pred CCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcE
Q 044924 459 FNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQL 538 (740)
Q Consensus 459 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 538 (740)
..+.+.+.|.++.|+++ .+|+.+..+.+|+.|++++|++. .+|..+..++.|+.|+++-|++. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 35666777888888887 77778888889999999999887 67888899999999999988887 78899999999999
Q ss_pred EEcccCcCCC-CCCc-cccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCC
Q 044924 539 LDISDNNISG-SLPS-CFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHN 616 (740)
Q Consensus 539 L~l~~n~l~~-~~~~-~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 616 (740)
||+..|++.. ..|. .|.+..|+.|+|++|.+. .+|.. .+.+++|+.|.+.+|.+. .+|..++.++.|++|++.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 9999988763 3443 344777777777777775 55555 777788888888887776 67777777888888888888
Q ss_pred cCcccCCccccCCC---CCCEEeCCCCccccCCC
Q 044924 617 NLEGEVPVQLCGLN---QLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 617 ~l~~~~p~~~~~l~---~L~~L~l~~n~~~~~~p 647 (740)
+++ .+|..++.+. +=+.+.+.+|+|...+.
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 877 6666665542 22445666677654443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=2.6e-17 Score=170.56 Aligned_cols=136 Identities=22% Similarity=0.289 Sum_probs=73.2
Q ss_pred ccCCCCCCEEEccCCcCCCC----CcccccCCCCCceecccCCcccCC----CchhhhCCCCCcEEEcccCcCCCCCCcc
Q 044924 482 LSKCSSLEGLYLNNNSLSGK----IPRWLGNLKGLKHIIMPENHLEGP----IPMEFCQLYSLQLLDISDNNISGSLPSC 553 (740)
Q Consensus 482 ~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 553 (740)
+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 33444555555555554421 122233344555555555555422 2233445566666666666655311111
Q ss_pred c------cccCccEEecCCccccc----cccccccccCCcceEEEccCCcCCCC----CCccccCc-CCCcEEEcCCCcC
Q 044924 554 F------HLLSIEQVHLSKNMLRG----QLKRGTFFNCSSLVTLDLSYNRLNGS----IPNWVDGL-SQLRHLILGHNNL 618 (740)
Q Consensus 554 ~------~~~~L~~L~L~~n~~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l 618 (740)
+ ....|+.|++++|.++. .+... +..+++|+++++++|.++.. ....+... +.|++|++.+|++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 12566777777666641 12222 55668899999999998854 33333344 6888888888764
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=5.6e-17 Score=138.35 Aligned_cols=167 Identities=26% Similarity=0.397 Sum_probs=145.2
Q ss_pred cCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEE
Q 044924 483 SKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQV 562 (740)
Q Consensus 483 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 562 (740)
..+..++.|-+++|+++ ..|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++...+.....++.|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 34567888999999998 67888999999999999999998 78889999999999999999988444444449999999
Q ss_pred ecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 044924 563 HLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNL 642 (740)
Q Consensus 563 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 642 (740)
+|.+|.+....-++-|..++.|+.|+|++|.+. .+|..++++++|+.|.++.|.+. .+|..++.+..|+.|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 999999885544445888999999999999998 78888999999999999999999 8999999999999999999999
Q ss_pred ccCCCCCCCccc
Q 044924 643 HGHIPPCFDNTT 654 (740)
Q Consensus 643 ~~~~p~~~~~~~ 654 (740)
+ .+|..++++.
T Consensus 186 ~-vlppel~~l~ 196 (264)
T KOG0617|consen 186 T-VLPPELANLD 196 (264)
T ss_pred e-ecChhhhhhh
Confidence 8 5555555544
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=2.3e-12 Score=123.53 Aligned_cols=259 Identities=20% Similarity=0.195 Sum_probs=167.0
Q ss_pred cccCCCCCcEEecCCCcCCch----hhHhhhcCCCCCEEEcCCCcCC---CccCh------hhhcCCCCCcEEeCCCCcc
Q 044924 3 TLSRLTNLKMLDLRGNLFNNS----ILSSLAHLSSLTSLDLSENKLE---GSINV------KEFDSLSNLEELDMSGNEI 69 (740)
Q Consensus 3 ~l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~Ls~~~~~---~~i~~------~~~~~l~~L~~L~Ls~n~~ 69 (740)
.+.....+++++|++|.+... +.+.+.+-++|+.-++|+--.. ..+|. .++-.+++|++||||.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345677889999999988543 6777888899999999885321 12332 2455678999999999988
Q ss_pred CCCcC---CccccCCCCCcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccch
Q 044924 70 DNFQV---PQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDAR 146 (740)
Q Consensus 70 ~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 146 (740)
....+ ..-+.++..|++|.+.+|++........ + .-|.++. . ....++-+.|+++...+|+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l--~--~al~~l~--~----------~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL--G--RALFELA--V----------NKKAASKPKLRVFICGRNR 168 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH--H--HHHHHHH--H----------HhccCCCcceEEEEeeccc
Confidence 75521 2345568899999999998865332221 0 0000110 0 1234556778888888775
Q ss_pred hhcchhh-hHHhhhcCCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCC----ChhhhcCCCCcEEEc
Q 044924 147 IALNTSF-LQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSL----PWCLANMTSLRILDV 221 (740)
Q Consensus 147 ~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L 221 (740)
....+.. .....+..+.|+.+.++.|.+....+..+..++..+++|++|+|.+|.++... ...+..+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 4333221 22333337788888888875555556666677888888888888888776432 344556778888888
Q ss_pred CCCcccCCCCcc----cccCcCCccEEEccCCcccccC---CccccccCCccceeeccCCccc
Q 044924 222 SSNQLTGSISSS----PLIHLTSIEELRLSDNHFRIPI---SLEPLFNHSRLQIFDAYNNEIN 277 (740)
Q Consensus 222 ~~n~l~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~ 277 (740)
++|.+...-... .-...|.|++|.+.+|.++... ....+...+.|..|++++|++.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 888776432221 1124678888888888877321 1223456788888888888884
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.9e-12 Score=126.27 Aligned_cols=212 Identities=23% Similarity=0.259 Sum_probs=97.3
Q ss_pred CCCCCcEEecCCCcCCchhh-HhhhcCCCCCEEEcCCCcCCCccChh-hhcCCCCCcEEeCCCCccCCCcCCccccCCCC
Q 044924 6 RLTNLKMLDLRGNLFNNSIL-SSLAHLSSLTSLDLSENKLEGSINVK-EFDSLSNLEELDMSGNEIDNFQVPQGYGGLRK 83 (740)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~Ls~~~~~~~i~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 83 (740)
++++|+...|.++.+..+.. .....|++++.||||.|-+...-+.. ....+++|+.|+++.|.+...+....-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34445555555444432211 23444555555555555444221111 23345555555555554443321122223444
Q ss_pred CcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCC
Q 044924 84 LKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPS 163 (740)
Q Consensus 84 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 163 (740)
|+.|.++.|+++- .... ..+..+|+|+.|++..|...........+ +..
T Consensus 199 lK~L~l~~CGls~--------------------------k~V~--~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~ 247 (505)
T KOG3207|consen 199 LKQLVLNSCGLSW--------------------------KDVQ--WILLTFPSLEVLYLEANEIILIKATSTKI---LQT 247 (505)
T ss_pred hheEEeccCCCCH--------------------------HHHH--HHHHhCCcHHHhhhhcccccceecchhhh---hhH
Confidence 4444444444432 1111 22345566666666655222222222222 335
Q ss_pred ceEEeccCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCC-Chh-----hhcCCCCcEEEcCCCcccCCCCccccc
Q 044924 164 LKYLSLSYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSL-PWC-----LANMTSLRILDVSSNQLTGSISSSPLI 236 (740)
Q Consensus 164 L~~L~L~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~l~ 236 (740)
|+.|||++| +...... ...+.++.|+.|+++.|+++... |++ ...+++|++|++..|++..--....+.
T Consensus 248 L~~LdLs~N~li~~~~~----~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQG----YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred HhhccccCCcccccccc----cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 666666665 2222111 23456667777777777665432 222 234566777777777664222222344
Q ss_pred CcCCccEEEccCCccc
Q 044924 237 HLTSIEELRLSDNHFR 252 (740)
Q Consensus 237 ~l~~L~~L~l~~n~~~ 252 (740)
.+++|+.|.+..|.+.
T Consensus 324 ~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhhccccccc
Confidence 5566666666666655
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1.1e-12 Score=133.19 Aligned_cols=191 Identities=27% Similarity=0.382 Sum_probs=118.3
Q ss_pred CcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccC
Q 044924 440 LEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPE 519 (740)
Q Consensus 440 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 519 (740)
-...+++.|.+.. +|..+..+..|+.+.++.|.+- .+|.++.++..|..+|++.|++. .+|..++.++ |+.|-+++
T Consensus 77 t~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 3455666666553 4455555666666666666665 56666666667777777777665 5555555554 66666666
Q ss_pred CcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCC
Q 044924 520 NHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 599 (740)
Q Consensus 520 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 599 (740)
|+++ .+|..++..+.|..||.+.|++....+....+.+|+.|.+..|.+. .+|.+ +. .-.|..||++.|++. .+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E-l~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE-LC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH-Hh-CCceeeeecccCcee-ecc
Confidence 6666 5666666666677777777766655555555666666666666665 44544 44 234666677777666 566
Q ss_pred ccccCcCCCcEEEcCCCcCcccCCccccCC---CCCCEEeCCCC
Q 044924 600 NWVDGLSQLRHLILGHNNLEGEVPVQLCGL---NQLQLLDLSNN 640 (740)
Q Consensus 600 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~l~~n 640 (740)
.+|.+|..|++|.|.+|.+. ..|..+|.. .-.++|++.-|
T Consensus 228 v~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 66666777777777777666 555554432 23355666555
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=7.5e-11 Score=125.67 Aligned_cols=178 Identities=33% Similarity=0.479 Sum_probs=93.8
Q ss_pred CCCEEEcccCcCcccCCccccCCC-CCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEc
Q 044924 463 NLRWLQLESNHFVGEIPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDI 541 (740)
Q Consensus 463 ~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 541 (740)
.++.+++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+..+.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 3444444444443 2333333332 4445555554444 22333444555555555555554 23333334455555555
Q ss_pred ccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCccc
Q 044924 542 SDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGE 621 (740)
Q Consensus 542 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 621 (740)
++|++....+.......|+++.+++|... ..+.. +.++.++..+.+.+|++. ..+..++.++++++|++++|+++ .
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~ 269 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-S 269 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceee-eccchhccccccceecccccccc-c
Confidence 55555533322223344555555555322 22222 566667777777777765 33666777777777777777777 3
Q ss_pred CCccccCCCCCCEEeCCCCccccCCCC
Q 044924 622 VPVQLCGLNQLQLLDLSNNNLHGHIPP 648 (740)
Q Consensus 622 ~p~~~~~l~~L~~L~l~~n~~~~~~p~ 648 (740)
++. +..+.+++.||+++|.+....|.
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccc-ccccCccCEEeccCccccccchh
Confidence 343 66777777777777777755554
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=2e-11 Score=117.19 Aligned_cols=92 Identities=28% Similarity=0.324 Sum_probs=43.6
Q ss_pred CCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCC---ccccCCCh-------hhhcCCCCcEEEcCCCcccCCC
Q 044924 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHN---DLRGSLPW-------CLANMTSLRILDVSSNQLTGSI 230 (740)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~---~l~~~~~~-------~l~~l~~L~~L~L~~n~l~~~~ 230 (740)
+..+..+++++|..|....+.+...+...+.|+..++++- +....+|. .+..+++|++||||+|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3344444444443333333333444444555555555542 11112222 2334556666666666554332
Q ss_pred Ccc---cccCcCCccEEEccCCccc
Q 044924 231 SSS---PLIHLTSIEELRLSDNHFR 252 (740)
Q Consensus 231 ~~~---~l~~l~~L~~L~l~~n~~~ 252 (740)
+.. -+.+++.|++|.|.+|.+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC
Confidence 221 2445667777777776654
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=8.3e-11 Score=106.33 Aligned_cols=129 Identities=28% Similarity=0.418 Sum_probs=39.8
Q ss_pred CCCcEEecCCCcCCchhhHhhh-cCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccc-cCCCCCc
Q 044924 8 TNLKMLDLRGNLFNNSILSSLA-HLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGY-GGLRKLK 85 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~ 85 (740)
.+++.|+|++|.|+.+ +.++ .+.+|+.|++++|.+. .++ .+..+++|++|++++|.++.. .+.+ ..+++|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i--~~~l~~~lp~L~ 91 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSI--SEGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S---CHHHHHH-TT--
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcc--ccchHHhCCcCC
Confidence 3445555555554432 1233 3445555555555554 233 344455555555555555432 2222 2345555
Q ss_pred EEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCce
Q 044924 86 SLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLK 165 (740)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 165 (740)
+|.+++|++.+ .... ..+..+++|++|++.+|++.........+...+|+|+
T Consensus 92 ~L~L~~N~I~~--------------------------l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 92 ELYLSNNKISD--------------------------LNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp EEE-TTS---S--------------------------CCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred EEECcCCcCCC--------------------------hHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 55555555443 2221 3467788888888888876544443333333488888
Q ss_pred EEeccC
Q 044924 166 YLSLSY 171 (740)
Q Consensus 166 ~L~L~~ 171 (740)
.||-..
T Consensus 144 ~LD~~~ 149 (175)
T PF14580_consen 144 VLDGQD 149 (175)
T ss_dssp EETTEE
T ss_pred eeCCEE
Confidence 887643
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=5.5e-12 Score=128.23 Aligned_cols=192 Identities=27% Similarity=0.375 Sum_probs=134.0
Q ss_pred CcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEcc
Q 044924 415 LQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLN 494 (740)
Q Consensus 415 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 494 (740)
-...|++.|++. ++|..+. .+..|+.+.+..|.+.. +|..+.++..|.+++|+.|++. .+|..+..++ |+.|-++
T Consensus 77 t~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhhccccccc-cCchHHH-HHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 345566666655 6666554 35566666666666553 5566667777777777777776 5666666654 7777777
Q ss_pred CCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcccccccc
Q 044924 495 NNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLK 574 (740)
Q Consensus 495 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 574 (740)
+|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|++...+++.. ...|..|+++.|++. .+|
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecc
Confidence 77776 66777777777777777777776 566677777777777777777775444433 556777888888877 677
Q ss_pred ccccccCCcceEEEccCCcCCCCCCccc---cCcCCCcEEEcCCCc
Q 044924 575 RGTFFNCSSLVTLDLSYNRLNGSIPNWV---DGLSQLRHLILGHNN 617 (740)
Q Consensus 575 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~ 617 (740)
.. |.+++.|++|-|.+|.++ .+|..+ +...=-++|+..-|+
T Consensus 228 v~-fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 228 VD-FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hh-hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 76 899999999999999998 677655 334456788888884
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.1e-10 Score=120.95 Aligned_cols=182 Identities=34% Similarity=0.444 Sum_probs=106.7
Q ss_pred CCCcEEeCCCCcccCcCccccCCCC-CCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceec
Q 044924 438 VNLEYLTLSNNNLEGHMFTRNFNLT-NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHII 516 (740)
Q Consensus 438 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 516 (740)
+.+..|++.+|.++.+. ....... +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+..++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 44455555555444322 2222232 5555555555554 33344555666666666666655 3343333556666666
Q ss_pred ccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCC
Q 044924 517 MPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNG 596 (740)
Q Consensus 517 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 596 (740)
+++|++. .+|........|++|.+++|.+...+.....+..+..+.+.+|++.. ++.. +..++++++|++++|.++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~-~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPES-IGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccch-hccccccceeccccccccc
Confidence 6666665 44444444445666666666544344444445566666666666552 2222 6777889999999999884
Q ss_pred CCCccccCcCCCcEEEcCCCcCcccCCcccc
Q 044924 597 SIPNWVDGLSQLRHLILGHNNLEGEVPVQLC 627 (740)
Q Consensus 597 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 627 (740)
++. ++.+.++++|++++|.+....|....
T Consensus 270 -i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 270 -ISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred -ccc-ccccCccCEEeccCccccccchhhhc
Confidence 444 88888999999999988866665544
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.9e-11 Score=119.31 Aligned_cols=111 Identities=29% Similarity=0.278 Sum_probs=49.3
Q ss_pred cCCCCCEEEecCCCCCCCCC-CCCCCCCCccEEEcccCcCCCcCc-hhHhhhCCCCcEEEccCCcCCCCCCc-cccCCCC
Q 044924 338 NNTRLETLSLVNDSLAGPFR-LPIHSHKQLRLLDVSNNNFQGHIP-VEIGDILPSLISFNISMNALNGSIPS-SFGNINS 414 (740)
Q Consensus 338 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 414 (740)
++.+|+++.+.++.+..... .-...|+.++.|++++|-+..-.+ ..+.+.+|+|+.|+++.|.+..-... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45566666666665543221 123445566666666655442111 22333455555555555554311111 1113345
Q ss_pred CcEEeccCcccccccchhhhhcCCCCcEEeCCCC
Q 044924 415 LQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNN 448 (740)
Q Consensus 415 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 448 (740)
|+.|.++.|+++..--......+|+|+.|++..|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 5555555554442222222233455555555544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=5.4e-11 Score=111.41 Aligned_cols=130 Identities=25% Similarity=0.324 Sum_probs=66.5
Q ss_pred CCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEec
Q 044924 485 CSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHL 564 (740)
Q Consensus 485 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L 564 (740)
++.|+++|+++|.++ .+.++..-.|.++.|++++|.+... ..+..+++|+.||+++|.++.. ...
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gw----------- 347 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGW----------- 347 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhh-----------
Confidence 445666666666555 4445555556666666666665522 1255566666666666655421 111
Q ss_pred CCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCccc-CCccccCCCCCCEEeCCCCccc
Q 044924 565 SKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGE-VPVQLCGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 565 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~ 643 (740)
-..+.+.+.|.|+.|.+.. -..++++=+|..||+++|++... --..++.+|-|+++.+.+||+.
T Consensus 348 -------------h~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 348 -------------HLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred -------------HhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 2233445555555555431 12244444555555555555422 1134566666666666666665
Q ss_pred c
Q 044924 644 G 644 (740)
Q Consensus 644 ~ 644 (740)
+
T Consensus 413 ~ 413 (490)
T KOG1259|consen 413 G 413 (490)
T ss_pred c
Confidence 3
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-11 Score=113.43 Aligned_cols=228 Identities=17% Similarity=0.154 Sum_probs=151.8
Q ss_pred cEEecCCCcCCchhhHhhhcC--CCCCEEEcCCCcCCCccChhhhcCC-CCCcEEeCCCCccCCCcCCccccCCCCCcEE
Q 044924 11 KMLDLRGNLFNNSILSSLAHL--SSLTSLDLSENKLEGSINVKEFDSL-SNLEELDMSGNEIDNFQVPQGYGGLRKLKSL 87 (740)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~~--~~L~~L~Ls~~~~~~~i~~~~~~~l-~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 87 (740)
+.||+.+-.+. |.+++.+ ....++.+....+...--...+.-+ +.||+||||+..++..+....+..|.+|+.|
T Consensus 139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l 215 (419)
T KOG2120|consen 139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL 215 (419)
T ss_pred eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence 56788776655 5555554 3566677765444321011123333 3699999999998876677788899999999
Q ss_pred EccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEE
Q 044924 88 HLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYL 167 (740)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 167 (740)
++-++++.+ +....+.....|+.++++.+..++..... -.++++++|++|+++||.. ....+...+...-++|..|
T Consensus 216 SlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~-ll~~scs~L~~LNlsWc~l-~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 216 SLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQ-LLLSSCSRLDELNLSWCFL-FTEKVTVAVAHISETLTQL 291 (419)
T ss_pred cccccccCc--HHHHHHhccccceeeccccccccchhHHH-HHHHhhhhHhhcCchHhhc-cchhhhHHHhhhchhhhhh
Confidence 999999876 34455568889999999998877665432 3477899999999999942 2222333344435688888
Q ss_pred eccCC--CCCCCcccchhhhhcCCCCCcEEeccCCc-cccCCChhhhcCCCCcEEEcCCCcccCCCCcc--cccCcCCcc
Q 044924 168 SLSYS--TPGTNSIEILDQGLCSLMHMQELHIAHND-LRGSLPWCLANMTSLRILDVSSNQLTGSISSS--PLIHLTSIE 242 (740)
Q Consensus 168 ~L~~~--~~~~~~l~~l~~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~l~~L~ 242 (740)
+++++ ..+.+.+. .-...+|+|..|+|++|. ++......|.+++.|++|.++.|... +|.. .+...|.|.
T Consensus 292 NlsG~rrnl~~sh~~---tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLS---TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhHhhhhhhHHH---HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceE
Confidence 88887 22332233 445678888888888873 33333345667788888888888632 2221 245677888
Q ss_pred EEEccCCc
Q 044924 243 ELRLSDNH 250 (740)
Q Consensus 243 ~L~l~~n~ 250 (740)
+|++.++-
T Consensus 367 yLdv~g~v 374 (419)
T KOG2120|consen 367 YLDVFGCV 374 (419)
T ss_pred EEEecccc
Confidence 88877764
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=5.4e-10 Score=101.08 Aligned_cols=40 Identities=30% Similarity=0.283 Sum_probs=12.0
Q ss_pred cCCcceEEEccCCcCCCCCC-ccccCcCCCcEEEcCCCcCc
Q 044924 580 NCSSLVTLDLSYNRLNGSIP-NWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 580 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 619 (740)
.+++|+.|+|++|+|..... ..+..+++|++|+|.+|++.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 34455555555555442111 22344455555555555544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=4.1e-10 Score=105.59 Aligned_cols=232 Identities=19% Similarity=0.214 Sum_probs=154.8
Q ss_pred hhHhhhcCCCCCEEEcCCCcCC--------CccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEccCcccC
Q 044924 24 ILSSLAHLSSLTSLDLSENKLE--------GSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIR 95 (740)
Q Consensus 24 ~~~~~~~~~~L~~L~Ls~~~~~--------~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 95 (740)
+.+.+.-+.+|++|..+...-. ..++- .+.-+++|..+.+|.+.-.. +......-|-|+++.+.+.-+.
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f-~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSF-NLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCcccccccccccc-chHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccc
Confidence 5566677889999988875311 11221 44556788888888885443 3344444577888888776554
Q ss_pred CCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEeccCCCCC
Q 044924 96 DGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPG 175 (740)
Q Consensus 96 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 175 (740)
+.... .|.-..-+.++.............+..++.|+++|+++|.+.. +-..+.- .|.++.|+++.|
T Consensus 251 ~~~~l------~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~---iDESvKL-~Pkir~L~lS~N--- 317 (490)
T KOG1259|consen 251 DVPSL------LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ---IDESVKL-APKLRRLILSQN--- 317 (490)
T ss_pred ccccc------cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh---hhhhhhh-ccceeEEecccc---
Confidence 32211 1222223333333222222223456678899999999985532 2233333 889999999986
Q ss_pred CCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccC
Q 044924 176 TNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPI 255 (740)
Q Consensus 176 ~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 255 (740)
.+..+ ..+..+++|+.|+|++|.++ .+..|=..+-+++.|.|++|.+. ++. .++++-+|..|++++|++...-
T Consensus 318 --~i~~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 318 --RIRTV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred --ceeee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHH
Confidence 22222 34777889999999999887 45555567788999999999876 343 3778889999999999988655
Q ss_pred CccccccCCccceeeccCCcccc
Q 044924 256 SLEPLFNHSRLQIFDAYNNEINA 278 (740)
Q Consensus 256 ~~~~l~~l~~L~~L~l~~~~~~~ 278 (740)
....+++++.|+.+.+.+|.+..
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HhcccccccHHHHHhhcCCCccc
Confidence 66778899999999999998865
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=1.7e-09 Score=120.34 Aligned_cols=112 Identities=33% Similarity=0.508 Sum_probs=78.2
Q ss_pred CcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcC
Q 044924 536 LQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILG 614 (740)
Q Consensus 536 L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 614 (740)
++.|+|++|.+.+.+|..+. +.+|+.|+|++|.+.|.+|.. +..+++|+.|+|++|.+++.+|+.++++++|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 33444444444444443332 444444455555555566655 7788888889999888888888888888999999999
Q ss_pred CCcCcccCCccccCC-CCCCEEeCCCCccccCCCC
Q 044924 615 HNNLEGEVPVQLCGL-NQLQLLDLSNNNLHGHIPP 648 (740)
Q Consensus 615 ~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~p~ 648 (740)
+|++++.+|..+... .++..+++.+|+..|..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999888888887753 4677888888887766554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2e-09 Score=79.80 Aligned_cols=61 Identities=43% Similarity=0.551 Sum_probs=42.8
Q ss_pred CcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 044924 582 SSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNL 642 (740)
Q Consensus 582 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 642 (740)
++|++|++++|+++...+++|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777766666777777777777777777766666777777777777777754
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.5e-10 Score=106.06 Aligned_cols=183 Identities=23% Similarity=0.198 Sum_probs=110.6
Q ss_pred CCcEEecCCCcCCch-hhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCc-cCCCcCCccccCCCCCcE
Q 044924 9 NLKMLDLRGNLFNNS-ILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNE-IDNFQVPQGYGGLRKLKS 86 (740)
Q Consensus 9 ~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~L~~ 86 (740)
+|++|||+...++.. +...++.|..|+-|.|.++++.+.|-. .+..-.+|+.||++.+. ++.....-.+.+|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 366666666555432 333455666666666666666544433 45555666666666653 332223344556666666
Q ss_pred EEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceE
Q 044924 87 LHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKY 166 (740)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 166 (740)
|+++.|.+....-... .-.--++|..|+++++.-.+..+....+...||+|..
T Consensus 265 LNlsWc~l~~~~Vtv~---------------------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVA---------------------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred cCchHhhccchhhhHH---------------------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 6666665543221111 1122467888888888655555555555555999999
Q ss_pred EeccCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChh---hhcCCCCcEEEcCCCc
Q 044924 167 LSLSYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWC---LANMTSLRILDVSSNQ 225 (740)
Q Consensus 167 L~L~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~---l~~l~~L~~L~L~~n~ 225 (740)
|||+.+ .... ..- ..+.+++.|++|.++.|.. .+|.. +...|.|.+||+.++-
T Consensus 318 LDLSD~v~l~~-~~~---~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKN-DCF---QEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCc-hHH---HHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 999987 2211 122 5688899999999998843 45554 4566889999998873
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=6.9e-09 Score=76.94 Aligned_cols=60 Identities=40% Similarity=0.524 Sum_probs=51.1
Q ss_pred CccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcC
Q 044924 558 SIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNL 618 (740)
Q Consensus 558 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 618 (740)
+|+.|++++|+++ .++...|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5666777777666 67777799999999999999999988888999999999999999975
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=1.9e-08 Score=112.15 Aligned_cols=108 Identities=31% Similarity=0.508 Sum_probs=85.8
Q ss_pred CCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcc
Q 044924 463 NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDIS 542 (740)
Q Consensus 463 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 542 (740)
.++.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCcCCCCCCcccc--ccCccEEecCCcccc
Q 044924 543 DNNISGSLPSCFH--LLSIEQVHLSKNMLR 570 (740)
Q Consensus 543 ~n~l~~~~~~~~~--~~~L~~L~L~~n~~~ 570 (740)
+|++.+.+|..+. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 8888888777654 345667777777644
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=4.1e-09 Score=119.81 Aligned_cols=108 Identities=28% Similarity=0.290 Sum_probs=54.3
Q ss_pred CCCCcEEecCCCc--CCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCC
Q 044924 7 LTNLKMLDLRGNL--FNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKL 84 (740)
Q Consensus 7 l~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 84 (740)
+++|++|-+.+|. +..+..+.|..++.|++|||++|.-.+.+|. .++.+-+||+|+++++.+.. +|..+.++.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISH--LPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccc--cchHHHHHHhh
Confidence 3345555555553 3333344455555666666665544444554 55556666666666555553 45555555566
Q ss_pred cEEEccCcccCCCcchhhccCCCCccceeeecCCc
Q 044924 85 KSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNN 119 (740)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 119 (740)
.+|++..+...... ......+.+|+++.+....
T Consensus 621 ~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI--PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccc--cchhhhcccccEEEeeccc
Confidence 66655554322211 1112235555555554443
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=1.7e-09 Score=106.49 Aligned_cols=266 Identities=20% Similarity=0.139 Sum_probs=158.5
Q ss_pred cCCCCCcEEecCCCc-CCchhhHhh-hcCCCCCEEEcCCCcCCCccChh-hhcCCCCCcEEeCCCCc-cCCCcCCccccC
Q 044924 5 SRLTNLKMLDLRGNL-FNNSILSSL-AHLSSLTSLDLSENKLEGSINVK-EFDSLSNLEELDMSGNE-IDNFQVPQGYGG 80 (740)
Q Consensus 5 ~~l~~L~~L~L~~~~-~~~~~~~~~-~~~~~L~~L~Ls~~~~~~~i~~~-~~~~l~~L~~L~Ls~n~-~~~~~~~~~l~~ 80 (740)
..++++++|++.+|. +++.....+ ..|+.|++|++..|..-...... ....|++|++|++++|. +++..+...+++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 357777777777763 344444444 35678888888775433232222 33467788888888774 333224445566
Q ss_pred CCCCcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhc
Q 044924 81 LRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL 160 (740)
Q Consensus 81 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 160 (740)
+..++.+..++|.-.........-..+.-+.++++..|..++....+ ..-..+..||+++.+++.. ..+.....++..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~-~i~~~c~~lq~l~~s~~t~-~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW-LIACGCHALQVLCYSSCTD-ITDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH-HHhhhhhHhhhhcccCCCC-CchHHHHHHhcC
Confidence 66677776665532221111122234555666666666655543321 2334577888888888753 555555666666
Q ss_pred CCCceEEeccCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccC--CChhhhcCCCCcEEEcCCCcccCCCCccc---
Q 044924 161 MPSLKYLSLSYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGS--LPWCLANMTSLRILDVSSNQLTGSISSSP--- 234 (740)
Q Consensus 161 ~~~L~~L~L~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--- 234 (740)
+++|+++.++.+ ..++..+.. --.+.++|+.+++..+..... +...-.+++.|+.+.++.|....+--...
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~---l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTM---LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred CCceEEEeccccchhhhhhhhh---hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 888888888887 333333332 224567888888888754322 12223367888888888876432220001
Q ss_pred -ccCcCCccEEEccCCcccccCCccccccCCccceeeccCCc
Q 044924 235 -LIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNE 275 (740)
Q Consensus 235 -l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~ 275 (740)
-..+..|+.+.+++++.........+..+++|+.+++..+.
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 12456788888888887766666667777888887776554
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.64 E-value=3.1e-08 Score=112.72 Aligned_cols=250 Identities=25% Similarity=0.283 Sum_probs=130.0
Q ss_pred CCCccEEEcccCc--CCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCC
Q 044924 363 HKQLRLLDVSNNN--FQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNL 440 (740)
Q Consensus 363 ~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 440 (740)
++.|++|-+..|. +. .++..++..++.|+.|++++|.-.+.+|..++.+-+|++|++++..+. .+|..+. .+.+|
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~-~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLG-NLKKL 620 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHH-HHHhh
Confidence 4457777777665 33 666666666777777777776555567777777777777777777765 6777664 56777
Q ss_pred cEEeCCCCcccCcCccccCCCCCCCEEEcccCcCc--ccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCc----e
Q 044924 441 EYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFV--GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLK----H 514 (740)
Q Consensus 441 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~ 514 (740)
.+|++..+......+.....+++|++|.+...... ...-..+..+.+|+.+....... .+-..+..++.|. .
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 77777766544444555555777777777654411 11112233444444444433222 1111222333332 2
Q ss_pred ecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-------ccCccEEecCCccccccccccccccCCcceEE
Q 044924 515 IIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-------LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTL 587 (740)
Q Consensus 515 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 587 (740)
+.+.++... ..+..+..+.+|+.|.+.++.+......... ++++..+...++........ ..-.++|+.|
T Consensus 699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~--~~f~~~L~~l 775 (889)
T KOG4658|consen 699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW--LLFAPHLTSL 775 (889)
T ss_pred hhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch--hhccCcccEE
Confidence 222222222 3344556677777777777766532211110 11222222222221111111 1223667777
Q ss_pred EccCCcCCCCCCccccCcCCCcEEEcCCCcCcc
Q 044924 588 DLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG 620 (740)
Q Consensus 588 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 620 (740)
.+..+.....+......+..++++.+..+.+.+
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred EEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 777666554554445555555555555555543
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=9.7e-09 Score=109.44 Aligned_cols=244 Identities=28% Similarity=0.285 Sum_probs=143.0
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEE
Q 044924 389 PSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQ 468 (740)
Q Consensus 389 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 468 (740)
..++.+.+..|.+.. .-..+..+.+|+.+++.+|.+. .+.... ..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccch-hhhhcchheecccccccccc--chhhccchhhhe
Confidence 344444455554442 1223445566666666666554 222211 23566666666666666432 233455567777
Q ss_pred cccCcCcccCCccccCCCCCCEEEccCCcCCCCCc-ccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 469 LESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 469 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
+.+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 777766522 234446677777777777664433 2 45667777777777776522 23333444555577777665
Q ss_pred CCCCcccccc--CccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCccc---C
Q 044924 548 GSLPSCFHLL--SIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGE---V 622 (740)
Q Consensus 548 ~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~ 622 (740)
. +....... .|+.+++++|.+.. .+.+ +..+..+..|++.+|.+... ..+...+.+..+..+.|.+... .
T Consensus 222 ~-~~~l~~~~~~~L~~l~l~~n~i~~-~~~~-~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 222 K-LEGLNELVMLHLRELYLSGNRISR-SPEG-LENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred e-ccCcccchhHHHHHHhcccCcccc-cccc-ccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence 2 22222222 37788888887763 2222 66778888899998888743 2355667788888888876522 1
Q ss_pred Cc-cccCCCCCCEEeCCCCccccCCC
Q 044924 623 PV-QLCGLNQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 623 p~-~~~~l~~L~~L~l~~n~~~~~~p 647 (740)
.. ..+..+.++.+.+..|+.....+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccccccccCccccccc
Confidence 22 14566788888888888875544
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=1.1e-08 Score=108.93 Aligned_cols=218 Identities=28% Similarity=0.255 Sum_probs=140.0
Q ss_pred CCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCE
Q 044924 411 NINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEG 490 (740)
Q Consensus 411 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 490 (740)
.+..++.+++..|.+.. +-..+ ..+.+|..|++.+|.+..+.. .+..+++|+.|++++|.|+..- .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l-~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHL-SKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhccc-ccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhh
Confidence 45666677787776653 22222 357788888888888876432 2567888888888888887442 3556667888
Q ss_pred EEccCCcCCCCCcccccCCCCCceecccCCcccCCCc-hhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccc
Q 044924 491 LYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIP-MEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNML 569 (740)
Q Consensus 491 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~ 569 (740)
|++++|.+... ..+..+++|+.+++++|.+....+ . ...+.+++.+++.+|.+... ...-....+..+++..|.+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccc
Confidence 88888888633 345557888888888888875443 2 46777888888888876622 2222233444446666766
Q ss_pred cccccccccccCCc--ceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 044924 570 RGQLKRGTFFNCSS--LVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 570 ~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 643 (740)
+..-+ +..+.. |+.+++++|++. ..+..+..+..+..|++++|++... ..+...+.+..+....|++.
T Consensus 221 ~~~~~---l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 SKLEG---LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eeccC---cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 52111 222232 777888888876 3435566777788888888877622 22344556666666666655
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=6.2e-08 Score=90.04 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=113.0
Q ss_pred ccCCCCCcEEecCCCcCCch----hhHhhhcCCCCCEEEcCCCcCCC---ccCh------hhhcCCCCCcEEeCCCCccC
Q 044924 4 LSRLTNLKMLDLRGNLFNNS----ILSSLAHLSSLTSLDLSENKLEG---SINV------KEFDSLSNLEELDMSGNEID 70 (740)
Q Consensus 4 l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~Ls~~~~~~---~i~~------~~~~~l~~L~~L~Ls~n~~~ 70 (740)
+.-+..+..+|||+|.|.+. +++.++.-.+|+.-++++-.... .++. .++-.|++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34467789999999999654 77777788899999888753221 1111 35678999999999999987
Q ss_pred CCcCCc----cccCCCCCcEEEccCcccCCCcchhh-----------ccCCCCccceeeecCCccccccccc-cccCCCC
Q 044924 71 NFQVPQ----GYGGLRKLKSLHLSRVGIRDGSKLLR-----------SMGSFPSLNTLYLWGNNFTETMTTT-TQGFPHF 134 (740)
Q Consensus 71 ~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~-----------~~~~~~~l~~l~l~~~~~~~~~~~~-~~~l~~l 134 (740)
.. .++ .+.+-+.|.||.+++|++....-... -...-+.|++.+...|....+.... ...+..=
T Consensus 106 ~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 106 SE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred cc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 65 443 45567899999999998765332211 1113345555555555444332211 0111111
Q ss_pred CCCceeecccchhhcchh---hhHHhhhcCCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccC
Q 044924 135 KSLEHLEMDDARIALNTS---FLQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGS 205 (740)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~ 205 (740)
..|+++.+..|.+.-.+. +...++. +.+|++||+..|......-..+...+..++.|+.|.+.+|-++..
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 355566665553322221 1112222 556666666655111111223334455555566666666655433
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=3.2e-07 Score=86.60 Aligned_cols=110 Identities=22% Similarity=0.333 Sum_probs=68.3
Q ss_pred CCCCcEEecCCCcCCch-hhHhh-hcCCCCCEEEcCCCcCCCccChh-hhcCCCCCcEEeCCCCccCCCcCCccccCCCC
Q 044924 7 LTNLKMLDLRGNLFNNS-ILSSL-AHLSSLTSLDLSENKLEGSINVK-EFDSLSNLEELDMSGNEIDNFQVPQGYGGLRK 83 (740)
Q Consensus 7 l~~L~~L~L~~~~~~~~-~~~~~-~~~~~L~~L~Ls~~~~~~~i~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 83 (740)
.+.++.|.+.++.|..+ ....| ..+++++.|||.+|.+...-..+ .+.++++|++|+|+.|.+... +...-..+.+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccc
Confidence 34455677777766443 23334 46789999999999998532221 467899999999999988754 2222246678
Q ss_pred CcEEEccCcccCCCcchhhccCCCCccceeeecCC
Q 044924 84 LKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGN 118 (740)
Q Consensus 84 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 118 (740)
|++|-+.+..+.-.... -.+..+|.++++.++.|
T Consensus 123 l~~lVLNgT~L~w~~~~-s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQST-SSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCCCCChhhhh-hhhhcchhhhhhhhccc
Confidence 99998888765432111 11224444555555444
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=3.1e-08 Score=97.85 Aligned_cols=261 Identities=15% Similarity=0.130 Sum_probs=152.4
Q ss_pred CCCCCcEEecCCC-cCCchhhH-hhhcCCCCCEEEcCCCc-CCCc-cChhhhcCCCCCcEEeCCCCccCCC-cCCccccC
Q 044924 6 RLTNLKMLDLRGN-LFNNSILS-SLAHLSSLTSLDLSENK-LEGS-INVKEFDSLSNLEELDMSGNEIDNF-QVPQGYGG 80 (740)
Q Consensus 6 ~l~~L~~L~L~~~-~~~~~~~~-~~~~~~~L~~L~Ls~~~-~~~~-i~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~l~~ 80 (740)
.|++|++|+|..| .++....+ -...|++|++|++|+|. +++. +.. .+..++.++.+.+++|.-... .+...-..
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 5789999999985 45555454 44589999999999996 3321 222 456677788777777632211 01112223
Q ss_pred CCCCcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhc
Q 044924 81 LRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL 160 (740)
Q Consensus 81 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 160 (740)
+.-+..+++..+........+..-..+..++.+..+++......... .--.+..+|+.+.+..|+ .+.+.-...++..
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~-aLg~~~~~L~~l~l~~c~-~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW-ALGQHCHNLQVLELSGCQ-QFSDRGFTMLGRN 344 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH-HHhcCCCceEEEeccccc-hhhhhhhhhhhcC
Confidence 45566666656654444444555556777788887777665443321 122356788888888875 3433333445555
Q ss_pred CCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCC-----ChhhhcCCCCcEEEcCCCcccCCCCcccc
Q 044924 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSL-----PWCLANMTSLRILDVSSNQLTGSISSSPL 235 (740)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 235 (740)
++.|+.+++..+..+... .+...-..++.|++|.+++|...... ...-..+..|+.+.++++....+-....+
T Consensus 345 ~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred Chhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 778888888777222111 12123346778888888877533211 11122356678888888875433333346
Q ss_pred cCcCCccEEEccCCcccccCCcccc-ccCCccceeec
Q 044924 236 IHLTSIEELRLSDNHFRIPISLEPL-FNHSRLQIFDA 271 (740)
Q Consensus 236 ~~l~~L~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l 271 (740)
..+++|+.+++.++.-....+...+ .+++++++..+
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 6778888888887764323333333 45666665543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=4.6e-08 Score=92.09 Aligned_cols=233 Identities=19% Similarity=0.243 Sum_probs=143.7
Q ss_pred CCCCCEEEcCCCcCCCccChhhhc-CCCCCcEEeCCCCccCCCc-CCccccCCCCCcEEEccCcccCCCcchhhccCCCC
Q 044924 31 LSSLTSLDLSENKLEGSINVKEFD-SLSNLEELDMSGNEIDNFQ-VPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFP 108 (740)
Q Consensus 31 ~~~L~~L~Ls~~~~~~~i~~~~~~-~l~~L~~L~Ls~n~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (740)
...+..|.+.++.+...-....|+ .+++++.+||.+|.+++.. +...+.++|.|++|+++.|.+........ ....
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLK 121 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--cccc
Confidence 334557777888776433333344 5789999999999998864 55678899999999999999876544332 2455
Q ss_pred ccceeeecCCccccccccccccCCCCCCCceeecccchh---hcchhhhHHhhhcCCCceEEeccCCCCCCCcccchhhh
Q 044924 109 SLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARI---ALNTSFLQIIGELMPSLKYLSLSYSTPGTNSIEILDQG 185 (740)
Q Consensus 109 ~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 185 (740)
+++++.+-+...--.... ..+..+|.+++|+++.|.. ...+.- +...-+.++.|+.-.|.... ......-
T Consensus 122 nl~~lVLNgT~L~w~~~~--s~l~~lP~vtelHmS~N~~rq~n~Dd~c---~e~~s~~v~tlh~~~c~~~~--w~~~~~l 194 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQST--SSLDDLPKVTELHMSDNSLRQLNLDDNC---IEDWSTEVLTLHQLPCLEQL--WLNKNKL 194 (418)
T ss_pred ceEEEEEcCCCCChhhhh--hhhhcchhhhhhhhccchhhhhcccccc---ccccchhhhhhhcCCcHHHH--HHHHHhH
Confidence 788888776543322222 3467788889998888832 122211 11113345555555541100 1111122
Q ss_pred hcCCCCCcEEeccCCccccCC-ChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCc-----cc
Q 044924 186 LCSLMHMQELHIAHNDLRGSL-PWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISL-----EP 259 (740)
Q Consensus 186 ~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----~~ 259 (740)
...+|++..+-+..|.+...- ...+..++.+..|+|+.+++..--....+..+++|..|.++.+++...... -.
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll 274 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL 274 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE
Confidence 334678888888888665432 345666777778888888776444444577788888888888876532211 12
Q ss_pred cccCCccceeecc
Q 044924 260 LFNHSRLQIFDAY 272 (740)
Q Consensus 260 l~~l~~L~~L~l~ 272 (740)
++.+++++.|+-+
T Consensus 275 IaRL~~v~vLNGs 287 (418)
T KOG2982|consen 275 IARLTKVQVLNGS 287 (418)
T ss_pred EeeccceEEecCc
Confidence 3667777777644
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=2.5e-07 Score=86.16 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=80.8
Q ss_pred CCCCCceeecccchhhc--chhhhHHhhhcCCCceEEeccCCCCCC------CcccchhhhhcCCCCCcEEeccCCcccc
Q 044924 133 HFKSLEHLEMDDARIAL--NTSFLQIIGELMPSLKYLSLSYSTPGT------NSIEILDQGLCSLMHMQELHIAHNDLRG 204 (740)
Q Consensus 133 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~------~~l~~l~~~~~~l~~L~~L~L~~~~l~~ 204 (740)
-+..+..+++|+|.+.. ...++..+++ .++|+..+++.-+.|. ..+..+.+.+.++|+|+.++|++|.+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~-~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIAN-VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhh-hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 35666667777763311 1123333444 5566666666543332 1133444667788888888888888776
Q ss_pred CCChh----hhcCCCCcEEEcCCCcccCCCCccc-------------ccCcCCccEEEccCCcccccCC---ccccccCC
Q 044924 205 SLPWC----LANMTSLRILDVSSNQLTGSISSSP-------------LIHLTSIEELRLSDNHFRIPIS---LEPLFNHS 264 (740)
Q Consensus 205 ~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~---~~~l~~l~ 264 (740)
..|.. +..-+.|.||.+++|.+. .+.... ..+-|.|+++.+..|++..... ...+....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 66544 445677888888888654 322221 2245777777777777652111 11123335
Q ss_pred ccceeeccCCccc
Q 044924 265 RLQIFDAYNNEIN 277 (740)
Q Consensus 265 ~L~~L~l~~~~~~ 277 (740)
.|+.+.+..|.|.
T Consensus 186 ~lk~vki~qNgIr 198 (388)
T COG5238 186 NLKEVKIQQNGIR 198 (388)
T ss_pred CceeEEeeecCcC
Confidence 6666666666553
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=2.5e-08 Score=104.83 Aligned_cols=129 Identities=27% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCCceeecccchhhcchhhhHHhhhcCCCceEEeccCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcC
Q 044924 135 KSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANM 213 (740)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l 213 (740)
..|...+.++|.....+.-.. .++.++.|+|+.| +... ..+..+++|+.|+|+.|.+....--....+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC 232 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhhhhhh-------HHHHhcccccccccccchhccccccchhhh
Confidence 345555555554322222111 1456666666664 3222 345556666666666666653222222333
Q ss_pred CCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCccceeeccCCcccc
Q 044924 214 TSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINA 278 (740)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 278 (740)
+ |+.|.+++|.++ .+- .+.++.+|+.||+++|-+.+......+..+..|+.|.+.+|.+..
T Consensus 233 ~-L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred h-heeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3 666666666655 222 355666666666666666655555555666666666666666644
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=2e-08 Score=105.55 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=10.6
Q ss_pred CccccCCCCCcEEeccCccc
Q 044924 406 PSSFGNINSLQILDLSNNQL 425 (740)
Q Consensus 406 ~~~~~~l~~L~~L~l~~n~~ 425 (740)
|-.+..+.+|+.|.+.++.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred CceeccccceeeEEecCcch
Confidence 33444555566666655554
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=2.2e-07 Score=77.30 Aligned_cols=114 Identities=22% Similarity=0.251 Sum_probs=73.4
Q ss_pred CCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcE
Q 044924 532 QLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRH 610 (740)
Q Consensus 532 ~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 610 (740)
....|...++++|.+....+.... ++.++.+++++|.++ .+|.. +..++.|+.|++++|.+. ..|..+..+.++-+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 334444555555555533222222 345566666666665 67776 888888888888888887 56666777888888
Q ss_pred EEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCC
Q 044924 611 LILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPC 649 (740)
Q Consensus 611 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~ 649 (740)
|+..+|... .+|..+-.-......++.+++|.+..|.-
T Consensus 128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 888888877 55554333344455667777887666643
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=2.5e-06 Score=94.81 Aligned_cols=205 Identities=23% Similarity=0.255 Sum_probs=112.5
Q ss_pred CCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCc-------cChhhh-------cCCCCCcEEeCCCCccCC-C
Q 044924 8 TNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGS-------INVKEF-------DSLSNLEELDMSGNEIDN-F 72 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~-------i~~~~~-------~~l~~L~~L~Ls~n~~~~-~ 72 (740)
-++...++.+.......-..+.... |+.|.|++-..... +....+ ..-.+|++||+++..... .
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 3556666665555544444444444 77777776532211 110001 112578888888764322 2
Q ss_pred cCCccccCCCCCcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchh
Q 044924 73 QVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTS 152 (740)
Q Consensus 73 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 152 (740)
|....-.-+|.|++|.+++-.+.... -.....++++|..||+++++.... ..++++++||+|.+.+-.+....
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-----~GIS~LknLq~L~mrnLe~e~~~- 211 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-----SGISRLKNLQVLSMRNLEFESYQ- 211 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-----HHHhccccHHHHhccCCCCCchh-
Confidence 11122223788888888876664432 122334677788888877776554 34678888888888876432222
Q ss_pred hhHHhhhcCCCceEEeccCC-CCCC-CcccchhhhhcCCCCCcEEeccCCccccCCChh-hhcCCCCcEEEc
Q 044924 153 FLQIIGELMPSLKYLSLSYS-TPGT-NSIEILDQGLCSLMHMQELHIAHNDLRGSLPWC-LANMTSLRILDV 221 (740)
Q Consensus 153 ~~~~~~~~~~~L~~L~L~~~-~~~~-~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~-l~~l~~L~~L~L 221 (740)
....+++ +++|++||+|.. .... ..+...-+....+|+|+.|+.+++.+.+.+-+. +...++|+.+-+
T Consensus 212 ~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 212 DLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred hHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 2334555 888888888876 2221 112222233344777777777777666544322 233445554433
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=9.2e-06 Score=90.46 Aligned_cols=84 Identities=30% Similarity=0.460 Sum_probs=42.4
Q ss_pred CCcEEecCCCcC-CchhhHhh-hcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcE
Q 044924 9 NLKMLDLRGNLF-NNSILSSL-AHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKS 86 (740)
Q Consensus 9 ~L~~L~L~~~~~-~~~~~~~~-~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 86 (740)
+|++||+++... ...=+..+ ..+|+|+.|.+++-.+...=-.....++++|..||+|+++++.. .++++|++|++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHH
Confidence 456666655432 11122223 24566666666665543210011334566666666666666543 45556666666
Q ss_pred EEccCcccC
Q 044924 87 LHLSRVGIR 95 (740)
Q Consensus 87 L~l~~~~~~ 95 (740)
|.+.+-.+.
T Consensus 200 L~mrnLe~e 208 (699)
T KOG3665|consen 200 LSMRNLEFE 208 (699)
T ss_pred HhccCCCCC
Confidence 666555444
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.6e-05 Score=53.66 Aligned_cols=36 Identities=33% Similarity=0.513 Sum_probs=18.7
Q ss_pred cceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 583 SLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 583 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555555
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=1e-06 Score=73.38 Aligned_cols=109 Identities=23% Similarity=0.360 Sum_probs=82.0
Q ss_pred CCcEEEcccCcCCCCCCccc---cccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEE
Q 044924 535 SLQLLDISDNNISGSLPSCF---HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHL 611 (740)
Q Consensus 535 ~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 611 (740)
.+..++|++|++........ ....|+..+|++|.+. .+|...-...+..+.|+|++|.+. .+|+.+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 45667888887764333222 2456777889999888 566653444567888999999998 677779999999999
Q ss_pred EcCCCcCcccCCccccCCCCCCEEeCCCCccccCCC
Q 044924 612 ILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 612 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 647 (740)
+++.|.+. ..|..+..+.++..||..+|.+. .+|
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 99999998 77877777888889999888776 444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=3.5e-05 Score=69.15 Aligned_cols=130 Identities=26% Similarity=0.337 Sum_probs=79.5
Q ss_pred cEEecCCCcCCchhhHhhhc-CCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEc
Q 044924 11 KMLDLRGNLFNNSILSSLAH-LSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHL 89 (740)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~-~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l 89 (740)
+.++|++..+..+.- ++. ......+||++|.+. .++ .|..++.|.+|.+++|.|+.+ .+..-.-+++|+.|.+
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchh-hcc--cCCCccccceEEecCCcceee-ccchhhhccccceEEe
Confidence 456666655442211 221 235566777777765 333 466777777777777777765 4444444667777777
Q ss_pred cCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchh
Q 044924 90 SRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARI 147 (740)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 147 (740)
.+|.+..... ..-+..+++|+.|.+.+|+......=....+.++|+|+.||......
T Consensus 96 tnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 96 TNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 7776654322 22344677777777777776544322224577899999999988743
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.7e-05 Score=52.53 Aligned_cols=37 Identities=35% Similarity=0.586 Sum_probs=32.4
Q ss_pred CCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 044924 606 SQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 606 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 643 (740)
++|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 67778999999999999999987
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.71 E-value=5.8e-05 Score=66.04 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=1.5
Q ss_pred ccccccccCCcc
Q 044924 573 LKRGTFFNCSSL 584 (740)
Q Consensus 573 ~~~~~~~~l~~L 584 (740)
++..+|.+|++|
T Consensus 117 i~~~~F~~~~~l 128 (129)
T PF13306_consen 117 IEENAFKNCTKL 128 (129)
T ss_dssp ----GGG-----
T ss_pred ECCccccccccC
Confidence 334445555554
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00015 Score=74.20 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=31.9
Q ss_pred CCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCC
Q 044924 437 CVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNN 496 (740)
Q Consensus 437 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 496 (740)
+.++++|++++|.++.. |. -..+|++|.+.+|.-...+|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 56777777777766543 21 12357777776654433555433 246667777666
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00025 Score=72.68 Aligned_cols=136 Identities=20% Similarity=0.293 Sum_probs=91.4
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccC-cCCCCCCccccccCcc
Q 044924 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN-NISGSLPSCFHLLSIE 560 (740)
Q Consensus 482 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~L~ 560 (740)
+..+.+++.|++++|.+. .+|. + ..+|+.|.++++.--..+|..+ .++|++|++++| .+. .+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-----~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-----ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-----cccc
Confidence 445689999999999876 4452 2 3579999999864434666655 358999999998 443 333 4688
Q ss_pred EEecCCcccc--ccccccccccCCcceEEEccCCc-CC-CCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEe
Q 044924 561 QVHLSKNMLR--GQLKRGTFFNCSSLVTLDLSYNR-LN-GSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLD 636 (740)
Q Consensus 561 ~L~L~~n~~~--~~~~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 636 (740)
.|++.++... +.+| ++|+.|.+.+++ .. ...|..+. ++|++|++++|... .+|..+. .+|+.|+
T Consensus 116 ~L~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGSATDSIKNVP-------NGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred eEEeCCCCCcccccCc-------chHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 8888776543 2333 357788875433 11 11222222 68999999999877 5666555 6899999
Q ss_pred CCCCc
Q 044924 637 LSNNN 641 (740)
Q Consensus 637 l~~n~ 641 (740)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 98773
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.56 E-value=0.00019 Score=62.69 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=13.9
Q ss_pred cccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcc
Q 044924 505 WLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDIS 542 (740)
Q Consensus 505 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 542 (740)
.|.++++|+.+.+.++ +.......|.++++++.+.+.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred hccccccccccccccc-ccccceeeeeccccccccccc
Confidence 3444444444444432 333333344444445555553
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00019 Score=64.63 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=79.9
Q ss_pred CCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCC
Q 044924 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTS 240 (740)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 240 (740)
......+||+.| .+..+ ..|..+++|..|.|.+|+|+...|.--..+++|+.|.+.+|.+...-....+..||.
T Consensus 41 ~d~~d~iDLtdN-----dl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-----DLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceeccccc-----chhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 456777888775 22222 456778899999999999997767666667889999999998764333334788999
Q ss_pred ccEEEccCCcccccCC--ccccccCCccceeeccCCccc
Q 044924 241 IEELRLSDNHFRIPIS--LEPLFNHSRLQIFDAYNNEIN 277 (740)
Q Consensus 241 L~~L~l~~n~~~~~~~--~~~l~~l~~L~~L~l~~~~~~ 277 (740)
|++|.+-+|+.+.... ...+..+++|+.||+......
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 9999999998763322 234477889999888765443
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=6.9e-05 Score=82.53 Aligned_cols=138 Identities=25% Similarity=0.176 Sum_probs=69.4
Q ss_pred hcCCCCCEEEcCCCcCCCccC-hhhhcCCCCCcEEeCCCCc--cCCC--cCCccccCCCCCcEEEccCcc-cCCCcchhh
Q 044924 29 AHLSSLTSLDLSENKLEGSIN-VKEFDSLSNLEELDMSGNE--IDNF--QVPQGYGGLRKLKSLHLSRVG-IRDGSKLLR 102 (740)
Q Consensus 29 ~~~~~L~~L~Ls~~~~~~~i~-~~~~~~l~~L~~L~Ls~n~--~~~~--~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~ 102 (740)
..++.|+.|.+..+.-..... ......+++|+.|+++++. .... ........+++|++|+++++. +++......
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 346777777777765332211 1245567777777777631 1111 012234456777777777766 443222222
Q ss_pred ccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEec
Q 044924 103 SMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSL 169 (740)
Q Consensus 103 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 169 (740)
...++.++++.+.++...+.... ......+++|++|++++|.......+...... +++++.+.+
T Consensus 265 -~~~c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-c~~l~~l~~ 328 (482)
T KOG1947|consen 265 -ASRCPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLTDSGLEALLKN-CPNLRELKL 328 (482)
T ss_pred -HhhCCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccchHHHHHHHHHh-Ccchhhhhh
Confidence 11366666666555543222221 13344567777777777742212223333223 666555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00021 Score=67.23 Aligned_cols=113 Identities=24% Similarity=0.267 Sum_probs=64.7
Q ss_pred hhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCC--ccCCCcCCccccCCCCCcEEEccCcccCCCcchhhcc
Q 044924 27 SLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGN--EIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSM 104 (740)
Q Consensus 27 ~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 104 (740)
....+..|+.|++.++.++. + ..|=.+++|+.|.+|.| .+... +......+|+|++|++++|++.. ......+
T Consensus 38 l~d~~~~le~ls~~n~gltt-~--~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl 112 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT-L--TNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKD-LSTLRPL 112 (260)
T ss_pred ccccccchhhhhhhccceee-c--ccCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCcccc-ccccchh
Confidence 34455666666666666552 2 14555667777777777 33333 44555566777777777777765 2223334
Q ss_pred CCCCccceeeecCCccccccccccccCCCCCCCceeeccc
Q 044924 105 GSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDD 144 (740)
Q Consensus 105 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 144 (740)
..+.+|..|++..|............+.-+++|..|+-..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 4566666777766655543322223455567776665443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=0.00031 Score=77.36 Aligned_cols=243 Identities=22% Similarity=0.171 Sum_probs=131.8
Q ss_pred CCCCCcEEecCCCcCCch--hhHhhhcCCCCCEEEcCCC-cCCCccC---hhhhcCCCCCcEEeCCCCc-cCCCcCCccc
Q 044924 6 RLTNLKMLDLRGNLFNNS--ILSSLAHLSSLTSLDLSEN-KLEGSIN---VKEFDSLSNLEELDMSGNE-IDNFQVPQGY 78 (740)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~Ls~~-~~~~~i~---~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~l 78 (740)
.++.|+.|.+.++.-... .......+++|+.|+++++ ......+ ......+.+|+.|+++++. +++..+....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 468888888888743322 4566778899999999873 2221212 1234567889999999987 6665333333
Q ss_pred cCCCCCcEEEccCcc-cCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHh
Q 044924 79 GGLRKLKSLHLSRVG-IRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQII 157 (740)
Q Consensus 79 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 157 (740)
..|++|++|.+.++. +++. ........++.|+++++.++......... ....++++|+.+.+.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~l~-~~~~~c~~l~~l~~~~~~~---------- 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSGLE-ALLKNCPNLRELKLLSLNG---------- 333 (482)
T ss_pred hhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHHHH-HHHHhCcchhhhhhhhcCC----------
Confidence 348899999987776 4442 22233346888999999988876433221 2244566666665544421
Q ss_pred hhcCCCceEEeccCCCCCC-CcccchhhhhcCCCCCcEEeccCCccccCC-ChhhhcCCCCcEEEcCCCcccCCCCcccc
Q 044924 158 GELMPSLKYLSLSYSTPGT-NSIEILDQGLCSLMHMQELHIAHNDLRGSL-PWCLANMTSLRILDVSSNQLTGSISSSPL 235 (740)
Q Consensus 158 ~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 235 (740)
++.++.+.+....... ..+. ......+++++.+.+..+...... ...+..++.|. ..+... .
T Consensus 334 ---c~~l~~~~l~~~~~~~~d~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~ 397 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTSDDLA--ELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------L 397 (482)
T ss_pred ---CccHHHHHHHHhhccCchhHh--HHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------h
Confidence 2333333333321100 0011 134556777777777777633222 23344555552 111111 1
Q ss_pred cCcCCccEEEccCCcccccCCcccccc-CCccceeeccCCcc
Q 044924 236 IHLTSIEELRLSDNHFRIPISLEPLFN-HSRLQIFDAYNNEI 276 (740)
Q Consensus 236 ~~l~~L~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~~~~ 276 (740)
.....++.|+++.+............. +..++.+++.++..
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 111226666666665443322222222 45555565555544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=4.9e-05 Score=71.53 Aligned_cols=78 Identities=29% Similarity=0.344 Sum_probs=49.6
Q ss_pred ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCC-ccccCcCCCcEEEcCCCcCcccCCc-----cccCC
Q 044924 556 LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-NWVDGLSQLRHLILGHNNLEGEVPV-----QLCGL 629 (740)
Q Consensus 556 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~-----~~~~l 629 (740)
++.|+.|.|+-|+++ .+.+ +..|++|++|+|..|.|..... ..+.++++|+.|+|..|.=.+..+. .+.-+
T Consensus 40 Mp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred cccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 334444444444443 3322 7788888888888888873221 2357788888888888876655443 34557
Q ss_pred CCCCEEe
Q 044924 630 NQLQLLD 636 (740)
Q Consensus 630 ~~L~~L~ 636 (740)
|+|++||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 7888776
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.001 Score=62.70 Aligned_cols=113 Identities=26% Similarity=0.304 Sum_probs=68.5
Q ss_pred hhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccC
Q 044924 52 EFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGF 131 (740)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 131 (740)
-...+..|+.|.+.+..++.. ..+-.|++|++|.++.|..............+++++++.+++|.+...... ..+
T Consensus 38 l~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl--~pl 112 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL--RPL 112 (260)
T ss_pred ccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc--chh
Confidence 455667888888888877754 567788999999999984433222222223457777777777776542221 345
Q ss_pred CCCCCCceeecccchhhcchhhhHHhhhcCCCceEEec
Q 044924 132 PHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSL 169 (740)
Q Consensus 132 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 169 (740)
..+++|..|++..|...-.......++..+++|.+|+-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 66777777777777432222223334444555555544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00013 Score=68.82 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=61.5
Q ss_pred CCCCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCc
Q 044924 6 RLTNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLK 85 (740)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 85 (740)
++.+.+.|+.-+|++.++ ....+++.|++|.||=|+|+ .+. .+..|++|++|.|..|.|.++....-+.++|+|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 355677788888887764 23467788888888888887 343 4788888888888888887664445566778888
Q ss_pred EEEccCcccCC
Q 044924 86 SLHLSRVGIRD 96 (740)
Q Consensus 86 ~L~l~~~~~~~ 96 (740)
.|.|..|...+
T Consensus 92 ~LWL~ENPCc~ 102 (388)
T KOG2123|consen 92 TLWLDENPCCG 102 (388)
T ss_pred hHhhccCCccc
Confidence 88887775543
No 71
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.34 E-value=0.0079 Score=74.76 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=59.2
Q ss_pred EcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCCCCcccccccccccccccccceeEEEecc
Q 044924 612 ILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSS 691 (740)
Q Consensus 612 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 691 (740)
||++|+|+...+..|..+++|+.|+|++|||. |+|.+.+|..|+....... .....+.|..|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~-----------------CDC~L~WL~~WL~~~~v~v-~~~~~i~CasP 62 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE-----------------CDCGLARLPRWAEEKGVKV-RQPEAALCAGP 62 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc-----------------cccccHHHHHHHHhcCccc-cCCcccCCCCC
Confidence 58899999777778888999999999999998 9999999999987654322 23356889999
Q ss_pred ccccccCCC
Q 044924 692 SSLATLTLN 700 (740)
Q Consensus 692 ~~~~~~~~~ 700 (740)
+.+.|.++.
T Consensus 63 ~~LrG~~L~ 71 (2740)
T TIGR00864 63 GALAGQPLL 71 (2740)
T ss_pred hHHCCCCcc
Confidence 999999987
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.97 E-value=0.011 Score=32.87 Aligned_cols=12 Identities=50% Similarity=0.470 Sum_probs=5.0
Q ss_pred CcEEEcCCCcCc
Q 044924 608 LRHLILGHNNLE 619 (740)
Q Consensus 608 L~~L~L~~n~l~ 619 (740)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.014 Score=32.45 Aligned_cols=21 Identities=48% Similarity=0.524 Sum_probs=13.6
Q ss_pred cceEEEccCCcCCCCCCccccC
Q 044924 583 SLVTLDLSYNRLNGSIPNWVDG 604 (740)
Q Consensus 583 ~L~~L~L~~n~l~~~~~~~~~~ 604 (740)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 55555554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.25 E-value=0.0026 Score=68.09 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=28.5
Q ss_pred CCEEEcCCCcCCCccCh---hhhcCCCCCcEEeCCCCccCCCc---CCccccCC-CCCcEEEccCcccCC
Q 044924 34 LTSLDLSENKLEGSINV---KEFDSLSNLEELDMSGNEIDNFQ---VPQGYGGL-RKLKSLHLSRVGIRD 96 (740)
Q Consensus 34 L~~L~Ls~~~~~~~i~~---~~~~~l~~L~~L~Ls~n~~~~~~---~~~~l~~l-~~L~~L~l~~~~~~~ 96 (740)
+.+|.|.+|.+...... ..+.....|+.|++++|.+.+.. +...+... ..|++|.+..|.++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~ 158 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS 158 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc
Confidence 55555666555432111 13344555666666666555431 11122222 334555555555443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.96 E-value=0.0041 Score=66.59 Aligned_cols=197 Identities=22% Similarity=0.256 Sum_probs=125.1
Q ss_pred CCcEEecCCCcCCch----hhHhhhcCCCCCEEEcCCCcCCCccChhhhc----CC-CCCcEEeCCCCccCCCc---CCc
Q 044924 9 NLKMLDLRGNLFNNS----ILSSLAHLSSLTSLDLSENKLEGSINVKEFD----SL-SNLEELDMSGNEIDNFQ---VPQ 76 (740)
Q Consensus 9 ~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~----~l-~~L~~L~Ls~n~~~~~~---~~~ 76 (740)
.+..|.|.+|.+... +..++.....|..|++++|.+.+. ....+. .. ..|++|++..|.++... ++.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~-g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE-GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH-hHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 377888999988654 555666788999999999998732 222222 22 45788888888877653 456
Q ss_pred cccCCCCCcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcch--hhh
Q 044924 77 GYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNT--SFL 154 (740)
Q Consensus 77 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~ 154 (740)
.+...+.++.++++.|.+........ ...++ ..+....++++|++.+|.+.... .+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l----~~~l~-----------------~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVL----SQALE-----------------SAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHH----hhhhh-----------------hhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 67778889999999988753222111 00000 01334566777777777332111 111
Q ss_pred HHhhhcCCC-ceEEeccCCCCCCCcccchhhhhcCC-CCCcEEeccCCccccCCC----hhhhcCCCCcEEEcCCCcccC
Q 044924 155 QIIGELMPS-LKYLSLSYSTPGTNSIEILDQGLCSL-MHMQELHIAHNDLRGSLP----WCLANMTSLRILDVSSNQLTG 228 (740)
Q Consensus 155 ~~~~~~~~~-L~~L~L~~~~~~~~~l~~l~~~~~~l-~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~n~l~~ 228 (740)
..+.. .+. ++.+++..|..++.....+...+... +.+++++++.|.++.... ..+..++.++.+.+++|.+..
T Consensus 226 ~~l~~-~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 226 EVLAS-GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHhc-cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12222 333 56688877754544466666677777 788999999998876543 445567889999999998763
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.50 E-value=0.025 Score=51.43 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=59.9
Q ss_pred CCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcC-CCCCcEEeCCCCc-cCCCcCCccccCCCCCcE
Q 044924 9 NLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDS-LSNLEELDMSGNE-IDNFQVPQGYGGLRKLKS 86 (740)
Q Consensus 9 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~-l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~L~~ 86 (740)
.++.+|-+++.|..+..+-+.+++.++.|.+.+|.-.+.-..+.++. .++|+.|++++|. |++. ....+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHH
Confidence 46788888888888878888889999999999887654433333443 4788999999774 5554 4556667777777
Q ss_pred EEccCc
Q 044924 87 LHLSRV 92 (740)
Q Consensus 87 L~l~~~ 92 (740)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 777653
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.04 E-value=0.096 Score=26.96 Aligned_cols=11 Identities=55% Similarity=0.676 Sum_probs=3.4
Q ss_pred CcEEEcCCCcC
Q 044924 608 LRHLILGHNNL 618 (740)
Q Consensus 608 L~~L~L~~n~l 618 (740)
|++|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=0.047 Score=49.70 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=60.0
Q ss_pred CCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCccccc-CcCCccEEEccCCcccccCCccccccCCccc
Q 044924 189 LMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLI-HLTSIEELRLSDNHFRIPISLEPLFNHSRLQ 267 (740)
Q Consensus 189 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 267 (740)
-..++.++-+++.+..+.-+.+.+++.++.|.+.+|.--++.--..++ -.++|+.|++++|+-.+......+..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 345788888888888776777888888888888888533221111122 2578999999999755555666677788888
Q ss_pred eeeccCC
Q 044924 268 IFDAYNN 274 (740)
Q Consensus 268 ~L~l~~~ 274 (740)
.|.+..-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8877643
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.79 E-value=0.2 Score=28.45 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=11.2
Q ss_pred CCCCcEEecCCCcCCchhhHhh
Q 044924 7 LTNLKMLDLRGNLFNNSILSSL 28 (740)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~ 28 (740)
+++|++|+|++|.+++....++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566667776666655544444
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.61 E-value=0.018 Score=53.22 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=52.0
Q ss_pred cccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 044924 578 FFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 578 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 643 (740)
|.-++.+..||++.|.+. ..|..+.+...+..+++.+|... ..|.+++..+.++++++-+|++.
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 566677888888888887 67777888888888888888877 78888888888888888888865
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.14 E-value=0.53 Score=27.30 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=11.2
Q ss_pred CCCCEEEcCCCcCCCccChhhh
Q 044924 32 SSLTSLDLSENKLEGSINVKEF 53 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~i~~~~~ 53 (740)
++|++|+|++|++. .+|.+.|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666554 4554333
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.14 E-value=0.53 Score=27.30 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=11.2
Q ss_pred CCCCEEEcCCCcCCCccChhhh
Q 044924 32 SSLTSLDLSENKLEGSINVKEF 53 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~i~~~~~ 53 (740)
++|++|+|++|++. .+|.+.|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666554 4554333
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.41 E-value=0.41 Score=27.80 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=6.7
Q ss_pred CCCcEEEcCCCcCc
Q 044924 606 SQLRHLILGHNNLE 619 (740)
Q Consensus 606 ~~L~~L~L~~n~l~ 619 (740)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444445444444
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.41 E-value=0.41 Score=27.80 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=6.7
Q ss_pred CCCcEEEcCCCcCc
Q 044924 606 SQLRHLILGHNNLE 619 (740)
Q Consensus 606 ~~L~~L~L~~n~l~ 619 (740)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444445444444
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.99 E-value=0.018 Score=53.22 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=58.7
Q ss_pred cccCCCCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCC
Q 044924 3 TLSRLTNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLR 82 (740)
Q Consensus 3 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 82 (740)
.++.+.+.++||++.|+.-. +-.-|+.++.|.-|+++.|++. -.|. +++....++++++.+|+.+. .|..+...+
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~~--~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHSQ--QPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchhh--CCccccccC
Confidence 45566777777777776542 2334666666777777777765 3443 77777777777777776654 477777777
Q ss_pred CCcEEEccCcccC
Q 044924 83 KLKSLHLSRVGIR 95 (740)
Q Consensus 83 ~L~~L~l~~~~~~ 95 (740)
++++++...+.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 7777777776543
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.08 E-value=2.6 Score=24.98 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=12.4
Q ss_pred CCCcEEecCCCcCCchhhHh
Q 044924 8 TNLKMLDLRGNLFNNSILSS 27 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~ 27 (740)
++|++|||++|.+...-..+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 46777777777776543333
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.79 E-value=3.5 Score=23.90 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=8.6
Q ss_pred CCcEEEcCCCcCcccCC
Q 044924 607 QLRHLILGHNNLEGEVP 623 (740)
Q Consensus 607 ~L~~L~L~~n~l~~~~p 623 (740)
+|++|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555555 444
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.72 E-value=28 Score=36.61 Aligned_cols=110 Identities=21% Similarity=0.119 Sum_probs=61.5
Q ss_pred CCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhh---cCCCCcEEEcCCCcccCCCCccccc-
Q 044924 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLA---NMTSLRILDVSSNQLTGSISSSPLI- 236 (740)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~l~- 236 (740)
-+.+++++++.+..++..-..++..... +.++.|..+......+. .=..+..+|++.|.....+|. .+.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p------l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~-~~n~ 236 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP------LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR-TLNK 236 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc------cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh-HHHH
Confidence 5678888888874444322223222222 66677766543221111 113478899999988877775 221
Q ss_pred --CcCCccEEEccCCcccccCCcccc--ccCCccceeeccCCccc
Q 044924 237 --HLTSIEELRLSDNHFRIPISLEPL--FNHSRLQIFDAYNNEIN 277 (740)
Q Consensus 237 --~l~~L~~L~l~~n~~~~~~~~~~l--~~l~~L~~L~l~~~~~~ 277 (740)
.-..++.++.++..+........+ +.-+++...+++.|..+
T Consensus 237 ~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 237 KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 223467777777766543333333 44556666666666544
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.43 E-value=4.4 Score=23.57 Aligned_cols=14 Identities=50% Similarity=0.812 Sum_probs=7.9
Q ss_pred CCCCEEEcCCCcCC
Q 044924 32 SSLTSLDLSENKLE 45 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~ 45 (740)
++|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45556666665554
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.03 E-value=11 Score=21.70 Aligned_cols=11 Identities=55% Similarity=0.785 Sum_probs=5.8
Q ss_pred CCCcEEecCCC
Q 044924 8 TNLKMLDLRGN 18 (740)
Q Consensus 8 ~~L~~L~L~~~ 18 (740)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.97 E-value=9.7 Score=40.76 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=17.1
Q ss_pred CCCceeecccchhhcc----hhhhHHhhhcCCCceEEec
Q 044924 135 KSLEHLEMDDARIALN----TSFLQIIGELMPSLKYLSL 169 (740)
Q Consensus 135 ~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~L~~L~L 169 (740)
..|++|-+.+|++..+ ......+...+|.|..||=
T Consensus 270 l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred CCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecC
Confidence 3456666666643211 1122233334777777764
No 92
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=40.92 E-value=5.7 Score=27.46 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=28.5
Q ss_pred cccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 658 SYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
.+.|+|.+.+|..|+... ........++|.+|+.+. .++.
T Consensus 2 P~~CdC~l~~~~~w~~~~--~~~~~~~~~~C~~P~~~~-~~l~ 41 (51)
T smart00082 2 PFICDCELRWLLRWLQAN--EHLQDPVSLRCASPSSLR-GPLL 41 (51)
T ss_pred CccCcCCchHHHHHHHhC--CccCCCCCCEeCCcHHHH-hHHH
Confidence 356999999998888662 223334579999999988 4444
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.87 E-value=38 Score=36.51 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=37.9
Q ss_pred hcCCCCCEEEcCCCcCCCccChhhhc----CCCCCcEEeCCCC--ccCCCcCCccccC--CCCCcEEEccCcccCC
Q 044924 29 AHLSSLTSLDLSENKLEGSINVKEFD----SLSNLEELDMSGN--EIDNFQVPQGYGG--LRKLKSLHLSRVGIRD 96 (740)
Q Consensus 29 ~~~~~L~~L~Ls~~~~~~~i~~~~~~----~l~~L~~L~Ls~n--~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~ 96 (740)
.+.+.+..++|++|++.. +. .++ .-++|..|+|++| .+... .++.+ ...|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~-Ld--~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYH-LD--ALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhc-hh--hhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCcccc
Confidence 456777778888887762 32 233 3467888888887 33322 22222 3456777788877654
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.09 E-value=2.2e+02 Score=30.38 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=10.0
Q ss_pred hcCCCCCcEEeccCCccc
Q 044924 186 LCSLMHMQELHIAHNDLR 203 (740)
Q Consensus 186 ~~~l~~L~~L~L~~~~l~ 203 (740)
...-+.+..|++++|...
T Consensus 436 l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hccCcccccccccCCCcc
Confidence 344455666666666443
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.33 E-value=46 Score=43.47 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=23.0
Q ss_pred ecCCccccccccccccccCCcceEEEccCCcCC
Q 044924 563 HLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLN 595 (740)
Q Consensus 563 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 595 (740)
+|++|+|+ .++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 46777777 566666777777777777777665
Done!