Query 044924
Match_columns 740
No_of_seqs 434 out of 3700
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-65 4E-70 592.7 42.9 599 3-650 72-724 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.6E-64 8.8E-69 581.5 39.8 601 8-655 50-705 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-57 7.4E-62 519.8 49.5 616 8-700 25-663 (680)
4 3t6q_A CD180 antigen; protein- 100.0 8.9E-54 3.1E-58 483.4 40.4 573 11-700 15-599 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3E-52 1E-56 477.3 45.2 570 10-650 6-604 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-52 1.1E-56 470.5 37.5 574 10-700 13-597 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-49 4.7E-54 463.5 41.4 566 8-715 24-609 (844)
8 3t6q_A CD180 antigen; protein- 100.0 4.1E-47 1.4E-51 428.9 43.4 517 34-653 14-546 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.6E-47 2.3E-51 427.2 36.2 510 8-619 32-558 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 5.7E-46 1.9E-50 416.8 34.0 272 366-648 259-536 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-44 7.6E-49 419.6 38.3 519 11-652 7-548 (844)
12 4g8a_A TOLL-like receptor 4; l 100.0 9.2E-44 3.2E-48 404.7 36.0 244 437-700 370-619 (635)
13 2z81_A CD282 antigen, TOLL-lik 100.0 6.6E-43 2.3E-47 389.7 35.5 398 185-647 93-514 (549)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-43 4.3E-48 392.4 25.7 283 359-693 215-512 (520)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-42 7.7E-47 385.4 30.0 495 7-623 4-514 (549)
16 4eco_A Uncharacterized protein 100.0 1.6E-42 5.4E-47 390.5 22.6 451 190-664 81-598 (636)
17 2z63_A TOLL-like receptor 4, v 100.0 5.8E-41 2E-45 376.1 33.7 491 8-550 28-534 (570)
18 4eco_A Uncharacterized protein 100.0 2.2E-42 7.4E-47 389.3 15.6 328 307-646 239-603 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 2.9E-40 9.8E-45 377.1 26.5 287 341-641 549-862 (876)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.1E-40 2.1E-44 365.8 26.1 468 7-647 30-514 (562)
21 2z7x_B TOLL-like receptor 1, v 100.0 9.2E-40 3.2E-44 361.5 25.7 419 190-652 21-466 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 6.4E-39 2.2E-43 366.0 30.1 348 307-665 440-839 (876)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-36 6.3E-41 344.5 38.3 494 9-552 53-560 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 3.3E-36 1.1E-40 327.3 30.8 372 190-648 30-413 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-36 8E-41 336.8 24.7 439 190-673 52-524 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 1.4E-35 4.7E-40 322.4 28.6 366 161-623 29-412 (455)
27 2id5_A Lingo-1, leucine rich r 100.0 3E-35 1E-39 321.5 26.0 355 318-700 14-369 (477)
28 1jl5_A Outer protein YOPM; leu 100.0 4.2E-35 1.4E-39 315.2 26.6 297 315-656 111-424 (454)
29 1o6v_A Internalin A; bacterial 100.0 6.4E-33 2.2E-37 301.4 36.0 346 189-645 45-390 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 1.7E-33 5.7E-38 302.7 27.0 282 311-649 149-435 (454)
31 1o6v_A Internalin A; bacterial 100.0 1.2E-32 4.2E-37 299.2 34.0 345 161-620 45-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3E-33 1E-37 301.0 27.3 359 185-651 37-395 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 2E-32 6.8E-37 299.1 23.7 336 315-655 32-368 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-31 9.2E-36 285.8 28.4 356 161-628 41-396 (457)
35 4fmz_A Internalin; leucine ric 100.0 7.5E-31 2.6E-35 274.1 29.7 307 311-643 40-346 (347)
36 3o6n_A APL1; leucine-rich repe 100.0 8.7E-31 3E-35 278.0 27.1 311 313-645 43-354 (390)
37 3oja_B Anopheles plasmodium-re 100.0 4.3E-30 1.5E-34 287.6 27.4 312 313-646 49-361 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 2.5E-30 8.6E-35 274.5 24.0 262 340-621 93-354 (390)
39 4fmz_A Internalin; leucine ric 100.0 2E-29 6.7E-34 263.3 30.1 282 314-619 65-346 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-31 1.2E-35 271.1 15.4 255 364-647 50-308 (313)
41 3zyj_A Leucine-rich repeat-con 100.0 1.3E-29 4.4E-34 273.2 24.2 286 366-700 45-330 (440)
42 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-29 8.8E-34 260.3 25.1 287 341-641 34-331 (332)
43 3zyi_A Leucine-rich repeat-con 100.0 2.2E-29 7.5E-34 272.4 25.1 285 367-700 57-341 (452)
44 3oja_B Anopheles plasmodium-re 100.0 3.8E-29 1.3E-33 280.0 26.4 262 340-621 99-360 (597)
45 1xku_A Decorin; proteoglycan, 100.0 8.1E-29 2.8E-33 256.4 26.5 268 364-641 52-330 (330)
46 1ogq_A PGIP-2, polygalacturona 100.0 4E-30 1.4E-34 263.2 16.5 250 340-618 50-303 (313)
47 2z66_A Variable lymphocyte rec 100.0 3.7E-29 1.3E-33 256.1 19.0 286 367-700 10-300 (306)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-32 9.7E-37 296.9 -6.8 336 308-643 49-440 (461)
49 1xku_A Decorin; proteoglycan, 100.0 9.4E-28 3.2E-32 248.4 27.5 289 316-617 32-330 (330)
50 2ft3_A Biglycan; proteoglycan, 100.0 4.8E-28 1.6E-32 250.7 24.7 288 316-617 34-331 (332)
51 1z7x_W Ribonuclease inhibitor; 100.0 3.9E-30 1.3E-34 280.0 3.8 395 7-475 2-440 (461)
52 1ozn_A Reticulon 4 receptor; N 100.0 8.3E-28 2.8E-32 243.2 20.6 259 416-700 14-274 (285)
53 2z80_A TOLL-like receptor 2, v 100.0 1.1E-28 3.9E-33 257.7 12.4 283 338-647 29-318 (353)
54 3ogk_B Coronatine-insensitive 99.9 7.8E-29 2.7E-33 278.8 5.0 427 12-499 54-526 (592)
55 2z66_A Variable lymphocyte rec 99.9 5.9E-27 2E-31 239.7 16.0 282 343-654 10-298 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 1.3E-26 4.4E-31 242.2 18.0 285 312-622 28-317 (353)
57 4fcg_A Uncharacterized protein 99.9 2.2E-26 7.6E-31 236.8 19.0 235 388-643 80-314 (328)
58 3ogk_B Coronatine-insensitive 99.9 4.7E-28 1.6E-32 272.4 5.9 256 359-617 265-549 (592)
59 1ozn_A Reticulon 4 receptor; N 99.9 6.1E-26 2.1E-30 229.4 16.6 257 367-654 14-272 (285)
60 4fcg_A Uncharacterized protein 99.9 1.5E-25 5.2E-30 230.5 19.3 234 363-619 80-314 (328)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-27 9.2E-32 243.0 5.0 267 366-648 12-281 (317)
62 3zyj_A Leucine-rich repeat-con 99.9 6.3E-25 2.2E-29 236.5 23.3 248 341-619 44-292 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 7.3E-25 2.5E-29 236.9 22.7 248 341-619 55-303 (452)
64 2p1m_B Transport inhibitor res 99.9 1.4E-27 4.7E-32 268.8 1.3 446 4-496 62-541 (594)
65 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4E-31 237.7 6.7 248 363-644 42-310 (312)
66 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.2E-29 216.5 22.6 205 414-646 17-221 (270)
67 1wwl_A Monocyte differentiatio 99.9 1.8E-26 6.1E-31 236.3 6.3 251 337-620 40-310 (312)
68 2p1m_B Transport inhibitor res 99.9 4E-27 1.4E-31 265.1 -0.1 451 11-544 46-541 (594)
69 1p9a_G Platelet glycoprotein I 99.9 2E-24 6.8E-29 217.8 19.1 204 409-644 6-209 (290)
70 3oja_A Leucine-rich immune mol 99.9 2.7E-25 9.3E-30 241.3 12.1 234 390-638 35-270 (487)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-23 4.4E-28 232.3 25.7 266 341-652 41-306 (622)
72 2z62_A TOLL-like receptor 4, v 99.9 1.3E-23 4.4E-28 211.3 19.3 225 394-647 12-241 (276)
73 3g06_A SSPH2 (leucine-rich rep 99.9 5.3E-23 1.8E-27 227.5 25.9 269 315-630 40-308 (622)
74 3o53_A Protein LRIM1, AGAP0063 99.9 2E-24 6.7E-29 221.6 12.1 242 391-648 12-256 (317)
75 2z62_A TOLL-like receptor 4, v 99.9 1.1E-22 3.9E-27 204.3 19.3 221 369-619 12-237 (276)
76 3oja_A Leucine-rich immune mol 99.9 1.8E-23 6.2E-28 226.9 13.5 225 411-651 32-259 (487)
77 3rfs_A Internalin B, repeat mo 99.9 2E-22 7E-27 201.7 18.3 208 411-654 39-246 (272)
78 2o6q_A Variable lymphocyte rec 99.9 1.2E-21 4.1E-26 195.9 22.3 201 391-619 18-218 (270)
79 3m19_A Variable lymphocyte rec 99.9 5.7E-22 1.9E-26 195.9 18.9 158 487-645 36-194 (251)
80 3rfs_A Internalin B, repeat mo 99.9 1.7E-21 5.9E-26 194.9 17.6 208 388-631 40-247 (272)
81 1p9a_G Platelet glycoprotein I 99.9 7.5E-21 2.6E-25 191.6 21.5 200 388-619 9-208 (290)
82 2xwt_C Thyrotropin receptor; s 99.9 2.5E-21 8.6E-26 189.9 15.5 196 439-641 32-237 (239)
83 2v9t_B SLIT homolog 2 protein 99.9 5E-21 1.7E-25 184.5 14.4 188 465-700 14-201 (220)
84 3goz_A Leucine-rich repeat-con 99.8 1.8E-22 6E-27 211.2 4.5 256 369-645 3-299 (362)
85 2xwt_C Thyrotropin receptor; s 99.8 5.5E-21 1.9E-25 187.4 14.7 198 390-617 32-237 (239)
86 4glp_A Monocyte differentiatio 99.8 2.5E-21 8.5E-26 197.9 11.9 201 438-644 91-308 (310)
87 2ast_B S-phase kinase-associat 99.8 2.5E-22 8.6E-27 208.4 4.5 254 365-652 48-315 (336)
88 2ca6_A RAN GTPase-activating p 99.8 8.8E-23 3E-27 215.9 0.4 240 388-646 31-319 (386)
89 3goz_A Leucine-rich repeat-con 99.8 5.1E-22 1.7E-26 207.8 5.3 208 344-551 2-242 (362)
90 4glp_A Monocyte differentiatio 99.8 1.1E-20 3.6E-25 193.2 13.8 227 365-620 65-308 (310)
91 2ast_B S-phase kinase-associat 99.8 2.7E-21 9.2E-26 200.6 9.3 256 340-628 47-315 (336)
92 3m19_A Variable lymphocyte rec 99.8 7.5E-20 2.6E-24 180.7 19.1 178 416-621 17-194 (251)
93 4ay9_X Follicle-stimulating ho 99.8 5.6E-20 1.9E-24 191.1 18.1 242 367-640 12-256 (350)
94 1h6u_A Internalin H; cell adhe 99.8 5.3E-20 1.8E-24 187.4 17.4 195 409-644 37-231 (308)
95 2ca6_A RAN GTPase-activating p 99.8 3.1E-22 1.1E-26 211.7 0.8 245 358-623 26-320 (386)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 4.1E-20 1.4E-24 178.1 14.4 187 466-700 15-202 (220)
97 1h6u_A Internalin H; cell adhe 99.8 1E-19 3.4E-24 185.4 17.4 191 388-619 40-230 (308)
98 4ay9_X Follicle-stimulating ho 99.8 4.9E-19 1.7E-23 184.0 16.9 201 343-549 12-217 (350)
99 2xot_A Amphoterin-induced prot 99.8 7.5E-20 2.6E-24 191.0 9.1 155 488-643 41-202 (361)
100 2o6s_A Variable lymphocyte rec 99.8 9.6E-19 3.3E-23 167.4 15.8 160 487-654 29-189 (208)
101 2o6s_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 167.6 15.1 163 438-631 28-190 (208)
102 3cvr_A Invasion plasmid antige 99.8 4E-18 1.4E-22 186.1 17.8 187 414-629 60-253 (571)
103 3cvr_A Invasion plasmid antige 99.8 9.6E-18 3.3E-22 183.0 17.5 189 390-607 60-255 (571)
104 1h6t_A Internalin B; cell adhe 99.8 1.8E-17 6E-22 167.1 17.8 171 437-645 45-215 (291)
105 3e6j_A Variable lymphocyte rec 99.8 1.7E-17 5.7E-22 161.0 16.9 154 465-646 22-175 (229)
106 2wfh_A SLIT homolog 2 protein 99.7 2E-17 6.9E-22 155.4 13.4 163 489-700 13-175 (193)
107 2xot_A Amphoterin-induced prot 99.7 1.6E-17 5.4E-22 173.3 12.9 130 416-549 21-151 (361)
108 1m9s_A Internalin B; cell inva 99.7 5.8E-17 2E-21 179.1 17.0 189 414-619 22-210 (605)
109 1w8a_A SLIT protein; signaling 99.7 2.3E-17 7.9E-22 155.1 11.4 164 489-700 11-175 (192)
110 1h6t_A Internalin B; cell adhe 99.7 4E-17 1.4E-21 164.5 13.6 189 391-620 26-214 (291)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-16 4E-21 153.8 15.1 152 393-547 15-166 (220)
112 1xeu_A Internalin C; cellular 99.7 5.4E-17 1.8E-21 160.8 11.4 151 483-646 38-188 (263)
113 3sb4_A Hypothetical leucine ri 99.7 4.7E-17 1.6E-21 167.5 11.2 216 412-636 100-327 (329)
114 2v9t_B SLIT homolog 2 protein 99.7 3E-16 1E-20 151.0 15.6 110 437-546 55-164 (220)
115 3e6j_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 150.4 17.4 153 440-620 21-173 (229)
116 1m9s_A Internalin B; cell inva 99.7 2E-16 6.9E-21 174.7 16.3 198 390-604 22-219 (605)
117 4ezg_A Putative uncharacterize 99.7 2.5E-16 8.5E-21 148.9 12.1 64 482-547 62-125 (197)
118 4ezg_A Putative uncharacterize 99.7 2.3E-16 8E-21 149.1 11.9 153 483-644 41-195 (197)
119 4fdw_A Leucine rich hypothetic 99.7 2.8E-15 9.4E-20 157.4 20.2 263 339-641 112-381 (401)
120 3sb4_A Hypothetical leucine ri 99.7 9.9E-17 3.4E-21 165.1 8.5 283 314-613 24-328 (329)
121 1xeu_A Internalin C; cellular 99.6 3.8E-16 1.3E-20 154.7 9.5 170 412-621 18-187 (263)
122 1dce_A Protein (RAB geranylger 99.6 3.7E-17 1.3E-21 179.6 -1.7 182 361-550 346-549 (567)
123 4fdw_A Leucine rich hypothetic 99.6 3.4E-14 1.2E-18 149.1 20.7 251 388-652 112-367 (401)
124 2ell_A Acidic leucine-rich nuc 99.6 4.9E-15 1.7E-19 136.1 11.9 84 462-547 24-108 (168)
125 1dce_A Protein (RAB geranylger 99.6 2.2E-17 7.6E-22 181.3 -5.3 182 460-648 347-551 (567)
126 1w8a_A SLIT protein; signaling 99.6 3E-15 1E-19 140.6 9.8 130 465-621 11-141 (192)
127 2ell_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 136.5 10.5 132 486-643 24-160 (168)
128 4fs7_A Uncharacterized protein 99.6 3.3E-14 1.1E-18 150.2 18.3 42 206-249 63-104 (394)
129 4b8c_D Glucose-repressible alc 99.6 7.2E-16 2.4E-20 175.0 4.4 176 364-551 173-358 (727)
130 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 133.4 13.2 132 489-647 10-141 (177)
131 4b8c_D Glucose-repressible alc 99.6 8.9E-16 3.1E-20 174.2 5.0 155 389-553 173-335 (727)
132 4fs7_A Uncharacterized protein 99.6 7.4E-14 2.5E-18 147.5 18.5 309 311-640 67-376 (394)
133 2je0_A Acidic leucine-rich nuc 99.5 6.1E-15 2.1E-19 132.5 8.0 128 486-639 17-149 (149)
134 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5.2E-19 129.8 10.1 128 462-614 17-148 (149)
135 2wfh_A SLIT homolog 2 protein 99.5 8.9E-14 3E-18 130.4 13.6 127 465-619 13-139 (193)
136 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 127.9 13.6 132 464-622 9-140 (177)
137 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 126.0 10.0 107 537-646 12-118 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.5 9.5E-14 3.2E-18 128.4 8.5 133 482-643 15-153 (176)
139 4gt6_A Cell surface protein; l 99.5 2.6E-12 8.8E-17 135.6 20.5 296 333-642 56-369 (394)
140 1a9n_A U2A', U2A'; complex (nu 99.4 2.3E-13 8E-18 125.8 8.5 134 458-619 15-153 (176)
141 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.6E-20 142.5 -6.0 131 505-643 43-185 (198)
142 2ifg_A High affinity nerve gro 99.4 1.2E-12 4.1E-17 135.8 10.0 135 515-695 13-149 (347)
143 1ds9_A Outer arm dynein; leuci 99.4 6.4E-15 2.2E-19 139.3 -7.0 133 481-619 43-185 (198)
144 2r9u_A Variable lymphocyte rec 99.3 4.2E-12 1.4E-16 116.6 11.8 107 537-646 15-121 (174)
145 4gt6_A Cell surface protein; l 99.3 7.6E-11 2.6E-15 124.3 20.5 285 356-654 55-357 (394)
146 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 113.2 11.4 105 488-619 11-115 (170)
147 2r9u_A Variable lymphocyte rec 99.3 1.8E-11 6.1E-16 112.4 11.9 104 489-619 15-118 (174)
148 4h09_A Hypothetical leucine ri 99.2 6.5E-10 2.2E-14 116.6 22.1 163 484-653 192-355 (379)
149 3un9_A NLR family member X1; l 99.2 1.6E-12 5.3E-17 135.1 0.3 194 31-252 71-283 (372)
150 4h09_A Hypothetical leucine ri 99.1 4E-09 1.4E-13 110.5 21.4 131 408-543 212-342 (379)
151 3un9_A NLR family member X1; l 99.1 3.6E-12 1.2E-16 132.3 -2.0 159 389-547 72-252 (372)
152 2ifg_A High affinity nerve gro 99.0 8.7E-10 3E-14 114.1 8.6 103 442-547 12-116 (347)
153 2ra8_A Uncharacterized protein 98.9 2.7E-09 9.2E-14 109.6 9.2 106 7-117 106-228 (362)
154 2ra8_A Uncharacterized protein 98.7 3.4E-09 1.2E-13 108.8 3.4 58 482-542 168-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 3.4E-08 1.2E-12 91.4 2.9 72 24-96 28-107 (185)
156 3rfe_A Platelet glycoprotein I 98.4 3.3E-07 1.1E-11 78.7 5.1 95 585-700 11-106 (130)
157 1io0_A Tropomodulin; LRR prote 98.3 4.9E-07 1.7E-11 83.5 4.9 66 161-226 92-163 (185)
158 3e4g_A ATP synthase subunit S, 98.2 4.2E-07 1.4E-11 81.5 1.5 84 9-93 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 3.5E-06 1.2E-10 81.6 6.1 110 4-115 137-258 (267)
160 3rw6_A Nuclear RNA export fact 98.0 1.1E-06 3.8E-11 85.1 1.7 88 54-143 167-259 (267)
161 3e4g_A ATP synthase subunit S, 97.7 7.3E-06 2.5E-10 73.4 1.5 85 190-275 61-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00051 1.7E-08 62.7 2.6 123 25-147 34-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0016 5.6E-08 59.3 4.1 38 162-199 98-135 (197)
164 3rfe_A Platelet glycoprotein I 96.1 0.0083 2.8E-07 51.0 6.1 56 561-619 12-68 (130)
165 2lz0_A Uncharacterized protein 72.3 2.5 8.6E-05 33.4 3.1 44 21-66 9-52 (100)
166 2lz0_A Uncharacterized protein 64.3 8.5 0.00029 30.3 4.6 44 595-639 9-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-65 Score=592.74 Aligned_cols=599 Identities=31% Similarity=0.421 Sum_probs=426.7
Q ss_pred cccCCCCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccCh-hhhcCCCCCcEEeCCCCccCCCcCCccc-cC
Q 044924 3 TLSRLTNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINV-KEFDSLSNLEELDMSGNEIDNFQVPQGY-GG 80 (740)
Q Consensus 3 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~l-~~ 80 (740)
+|.++++|+.++++++.+. .+++.|+.+++|++|+|++|.+.+.++. ..++++++|++|++++|.+... .+..+ .+
T Consensus 72 ~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~ 149 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLK 149 (768)
T ss_dssp HTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCC
T ss_pred hHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhcc
Confidence 4567777788887777654 2456778888888888888887765553 2577888888888888877655 44443 67
Q ss_pred CCCCcEEEccCcccCCCcchh-hccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhh
Q 044924 81 LRKLKSLHLSRVGIRDGSKLL-RSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGE 159 (740)
Q Consensus 81 l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 159 (740)
+++|++|++++|.+++..... ..+..+++++++++.+|..... . .+..+++|++|++++| ...+.++. +..
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~----~~~~l~~L~~L~Ls~n--~l~~~~~~-l~~ 221 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD-V----DVSRCVNLEFLDVSSN--NFSTGIPF-LGD 221 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC-C----BCTTCTTCCEEECCSS--CCCSCCCB-CTT
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc-C----CcccCCcCCEEECcCC--cCCCCCcc-ccc
Confidence 888888888888776544332 1255777888888887765432 1 2367788888888887 44444444 455
Q ss_pred cCCCceEEeccCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCc
Q 044924 160 LMPSLKYLSLSYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHL 238 (740)
Q Consensus 160 ~~~~L~~L~L~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 238 (740)
+++|++|++++| ..+. ++..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|......+
T Consensus 222 -l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~ 293 (768)
T 3rgz_A 222 -CSALQHLDISGNKLSGD-----FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293 (768)
T ss_dssp -CCSCCEEECCSSCCCSC-----HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTC
T ss_pred -CCCCCEEECcCCcCCCc-----ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhc
Confidence 778888888776 3322 3367777888888888888877766654 677888888888888777776333335
Q ss_pred CCccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchh-hccCCCc
Q 044924 239 TSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKF-LYHQHDL 317 (740)
Q Consensus 239 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~~~L 317 (740)
++|++|++++|.+.+.. ...+.++++|+.|++++|.+.+. +|.. +..+++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~---------------------------ip~~~l~~l~~L 345 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGE---------------------------LPMDTLLKMRGL 345 (768)
T ss_dssp TTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEE---------------------------CCHHHHTTCTTC
T ss_pred CcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCc---------------------------CCHHHHhcCCCC
Confidence 88888888888777543 35567788888888887766532 2332 5556667
Q ss_pred cEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCC--CCCccEEEcccCcCCCcCchhHhhhCCCCcEEE
Q 044924 318 VNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHS--HKQLRLLDVSNNNFQGHIPVEIGDILPSLISFN 395 (740)
Q Consensus 318 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 395 (740)
+.|++++|.+.+.+|..+....++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++.+|..+.. +++|++|+
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~ 424 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLH 424 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEE
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEE
Confidence 777777766666666654322236777777766666555555444 566777777777666666665554 56677777
Q ss_pred ccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCc
Q 044924 396 ISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFV 475 (740)
Q Consensus 396 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 475 (740)
+++|.+++..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 777766666666666667777777777766666665553 4666777777777766666666666677777777777766
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCC--------------------
Q 044924 476 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYS-------------------- 535 (740)
Q Consensus 476 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-------------------- 535 (740)
+.+|..++.+++|++|++++|.+.+.+|..++++++|+.|++++|.+++.+|..+.....
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 666666666677777777777666666666666777777777777666666665554433
Q ss_pred --------------------------CcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCcceEEE
Q 044924 536 --------------------------LQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLD 588 (740)
Q Consensus 536 --------------------------L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 588 (740)
++.++++.|.+.+..|..+. +.+|+.|++++|.++|.+|.. +.++++|+.|+
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ 662 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILN 662 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEE
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEe
Confidence 33344455666666666665 789999999999999999987 99999999999
Q ss_pred ccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCC
Q 044924 589 LSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCF 650 (740)
Q Consensus 589 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~ 650 (740)
|++|.++|.+|..|+++++|++|+|++|+++|.+|..+..+++|++||+++|+++|.+|+..
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999753
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.6e-64 Score=581.49 Aligned_cols=601 Identities=29% Similarity=0.407 Sum_probs=504.3
Q ss_pred CCCcEEecCCCcCCch---hhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCc--cccCCC
Q 044924 8 TNLKMLDLRGNLFNNS---ILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQ--GYGGLR 82 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~---~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~--~l~~l~ 82 (740)
.+++.|+|+++.+.+. ++.++..+++|+.++++.+.+. .++. .++.+++|++|+|++|.+++. +|. .+++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~ 126 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCS 126 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCc-CCChHHHhCCC
Confidence 5789999999999887 8889999999999999998875 3444 799999999999999998865 666 899999
Q ss_pred CCcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCC
Q 044924 83 KLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMP 162 (740)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 162 (740)
+|++|++++|.+....... .+..+++|++|++++|............+.++++|++|++++|. +.+..+. .. ++
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~--~~-l~ 200 (768)
T 3rgz_A 127 GLKFLNVSSNTLDFPGKVS-GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK--ISGDVDV--SR-CV 200 (768)
T ss_dssp TCCEEECCSSEEECCSSCC-SCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE--EESCCBC--TT-CT
T ss_pred CCCEEECcCCccCCcCCHH-HhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc--ccccCCc--cc-CC
Confidence 9999999999886533221 12467788888888887654332211126778888888888884 3333222 33 77
Q ss_pred CceEEeccCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCc
Q 044924 163 SLKYLSLSYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSI 241 (740)
Q Consensus 163 ~L~~L~L~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 241 (740)
+|++|++++| ..+. + ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|.. .+++|
T Consensus 201 ~L~~L~Ls~n~l~~~--~----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L 271 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTG--I----PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSL 271 (768)
T ss_dssp TCCEEECCSSCCCSC--C----CBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTC
T ss_pred cCCEEECcCCcCCCC--C----cccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCC
Confidence 8888888876 3332 2 23777888888888888888777888888888888888888887766652 77888
Q ss_pred cEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEE
Q 044924 242 EELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVD 321 (740)
Q Consensus 242 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 321 (740)
++|++++|.+.+.++......+++|+.|++++|.+.+ .+|..+..+++|+.|+
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~---------------------------~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG---------------------------AVPPFFGSCSLLESLA 324 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE---------------------------CCCGGGGGCTTCCEEE
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC---------------------------ccchHHhcCCCccEEE
Confidence 8888888888766654444445788888887776643 3577888999999999
Q ss_pred ccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCC-CccEEEcccCcCCCcCchhHhhh-CCCCcEEEccCC
Q 044924 322 LSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHK-QLRLLDVSNNNFQGHIPVEIGDI-LPSLISFNISMN 399 (740)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~n 399 (740)
+++|.+.+.+|...+..+++|++|++++|.+.+.++..+..++ +|+.|++++|.+++.+|..+... +++|++|++++|
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 9999999899988778999999999999999988888888887 99999999999998888776542 578999999999
Q ss_pred cCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCC
Q 044924 400 ALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIP 479 (740)
Q Consensus 400 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 479 (740)
.+++.+|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 99999999999999999999999999988888765 69999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccC
Q 044924 480 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLS 558 (740)
Q Consensus 480 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~ 558 (740)
..+..+++|++|++++|.+.+.+|.+++.+++|++|++++|.+++.+|..+..+++|++|++++|++.+.+|..+. ...
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876543 222
Q ss_pred ----------------------------------------------ccEEecCCccccccccccccccCCcceEEEccCC
Q 044924 559 ----------------------------------------------IEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYN 592 (740)
Q Consensus 559 ----------------------------------------------L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 592 (740)
+..+++..|.+.|.+|.. +..+++|+.|||++|
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~-~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYN 642 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS-CSSSBCCCEEECCSS
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh-hhccccccEEECcCC
Confidence 223344557777777776 889999999999999
Q ss_pred cCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcccc
Q 044924 593 RLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTL 655 (740)
Q Consensus 593 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~ 655 (740)
+++|.+|..++++++|++|+|++|+++|.+|..|+.+++|++|||++|+++|.+|+.+..++.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999998877654
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-57 Score=519.85 Aligned_cols=616 Identities=19% Similarity=0.181 Sum_probs=356.3
Q ss_pred CCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEE
Q 044924 8 TNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSL 87 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 87 (740)
+++++|+|++|.+++..+.+|+++++|++|++++|.+.+ +++..|+++++|++|++++|.++.. .+..|.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEE
Confidence 467888888888777777778888888888888887774 4444777888888888888877764 33467788888888
Q ss_pred EccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhh-cCCCceE
Q 044924 88 HLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGE-LMPSLKY 166 (740)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~ 166 (740)
++++|.++.... ..+..+++|+++++.+|....... ..+.++++|++|++++| .+.+..+..+.. .+++|+.
T Consensus 103 ~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 103 HLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKL---GTQVQLENLQELLLSNN--KIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp ECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCC---CSSSCCTTCCEEECCSS--CCCCBCHHHHGGGTTCEESE
T ss_pred ECCCCccCccCh--hHccccCCCCEEECCCCcccccCc---hhhcccccCCEEEccCC--cccccCHHHhhccccccccE
Confidence 888877765432 234567777777777776543322 34567777777777777 333333332221 1466777
Q ss_pred EeccCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhh---cCCCCcEEEcCCCcccCCCCcccccCcCC--
Q 044924 167 LSLSYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLA---NMTSLRILDVSSNQLTGSISSSPLIHLTS-- 240 (740)
Q Consensus 167 L~L~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~l~~l~~-- 240 (740)
|++++| ..+. . +..+..+++|+.|++.++.+.+.....+. ..++|+.|++++|.+.+..|. .+..++.
T Consensus 176 L~L~~n~l~~~--~---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~ 249 (680)
T 1ziw_A 176 LELSSNQIKEF--S---PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTN 249 (680)
T ss_dssp EECTTCCCCCB--C---TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSC
T ss_pred EECCCCccccc--C---hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCC
Confidence 777765 2221 1 24456666777777766655432221111 235677777777766644443 5555543
Q ss_pred ccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEE
Q 044924 241 IEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNV 320 (740)
Q Consensus 241 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L 320 (740)
|++|++++|.+.+ .....+..+++|+.|++++|.+... .|..+..+++|+.+
T Consensus 250 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~---------------------------~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 250 LTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHL---------------------------FSHSLHGLFNVRYL 301 (680)
T ss_dssp CCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEE---------------------------CTTTTTTCTTCCEE
T ss_pred CCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCcc---------------------------ChhhhcCCCCccEE
Confidence 7777777776653 2334456666666666666655432 23344555666666
Q ss_pred EccCccccCC-----cc---hHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCC-cCchhHhhh--CC
Q 044924 321 DLSHIKMNGG-----FP---NWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQG-HIPVEIGDI--LP 389 (740)
Q Consensus 321 ~l~~~~~~~~-----~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~--l~ 389 (740)
+++++...+. +| ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .++...+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 6665543321 11 1123455666666666666666555556666666666666655322 122211111 13
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEc
Q 044924 390 SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQL 469 (740)
Q Consensus 390 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 469 (740)
+|+.|++++|.+++..|..|..+++|++|++++|.+.+.+|...+.++++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56666666666655555555566666666666665555555444445555555555555555555555555555555555
Q ss_pred ccCcCc--ccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 470 ESNHFV--GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 470 ~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
++|.+. +..|..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------- 525 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP---------------- 525 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST----------------
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc----------------
Confidence 555543 23444444455555555555554444444444444444444444444422111000
Q ss_pred CCCCc-cccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccc
Q 044924 548 GSLPS-CFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQL 626 (740)
Q Consensus 548 ~~~~~-~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 626 (740)
+.... ...+++|+.|++++|.+. .+|...|.++++|+.|+|++|++++.++..|.++++|++|+|++|++++..|..+
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 00001 122566666666666666 6776669999999999999999998888889999999999999999998888777
Q ss_pred c-CCCCCCEEeCCCCccccCCCCCCCcccccccccCCCCC-cccccccccccccccccceeEEEeccccccccCCC
Q 044924 627 C-GLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSL-KPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 627 ~-~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
. .+++|+.+++++|++. |+|.. .+|..|+......+......++|.+|+.+.|.++.
T Consensus 605 ~~~~~~L~~l~l~~N~~~-----------------c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~ 663 (680)
T 1ziw_A 605 GPAFRNLTELDMRFNPFD-----------------CTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVR 663 (680)
T ss_dssp HHHHTTCSEEECTTCCCC-----------------BCCCCCSSEECCSSCC-------------------------
T ss_pred cccccccCEEEccCCCcc-----------------cCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCccc
Confidence 7 7899999999999998 55553 56666654443333333457899999999999877
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.9e-54 Score=483.35 Aligned_cols=573 Identities=20% Similarity=0.185 Sum_probs=411.0
Q ss_pred cEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEcc
Q 044924 11 KMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLS 90 (740)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~ 90 (740)
++++.++..++ .+|..+.. ++++|++++|.+. .+++..|+++++|++|++++|.+... .+..|.++++|++|+++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECT
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccC-cCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCC
Confidence 46777776666 34555543 6888888888887 45555788888888888888887765 67778888888888888
Q ss_pred CcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEecc
Q 044924 91 RVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLS 170 (740)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 170 (740)
+|.++...+ ..++++++|++|++++|.+ .+..+..+.. +++|++|+++
T Consensus 90 ~n~l~~~~~-----------------------------~~~~~l~~L~~L~L~~n~i--~~l~~~~~~~-l~~L~~L~L~ 137 (606)
T 3t6q_A 90 ANPLIFMAE-----------------------------TALSGPKALKHLFFIQTGI--SSIDFIPLHN-QKTLESLYLG 137 (606)
T ss_dssp TCCCSEECT-----------------------------TTTSSCTTCCEEECTTSCC--SCGGGSCCTT-CTTCCEEECC
T ss_pred CCcccccCh-----------------------------hhhcccccccEeeccccCc--ccCCcchhcc-CCcccEEECC
Confidence 887754221 2244555555555555522 2211111222 4555555555
Q ss_pred CC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCc--EEEcCCCcccCCCCcccccCcCCccEEEcc
Q 044924 171 YS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLR--ILDVSSNQLTGSISSSPLIHLTSIEELRLS 247 (740)
Q Consensus 171 ~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 247 (740)
+| ..+. .+ ..+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+.+..|. .+ ...+|++|+++
T Consensus 138 ~n~l~~~-~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~ 210 (606)
T 3t6q_A 138 SNHISSI-KL----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-AF-DSAVFQSLNFG 210 (606)
T ss_dssp SSCCCCC-CC----CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT-TT-TTCEEEEEECT
T ss_pred CCccccc-Cc----ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh-Hh-hhccccccccC
Confidence 44 1110 01 2333477788888888877766677777777777 777888877754443 33 33577777777
Q ss_pred CCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccc
Q 044924 248 DNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKM 327 (740)
Q Consensus 248 ~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 327 (740)
+|... ...+..+.++....+....+. .+...
T Consensus 211 ~~~~~----~~~~~~l~~~~l~~l~~~~~~--------------------------------------~~~~~------- 241 (606)
T 3t6q_A 211 GTQNL----LVIFKGLKNSTIQSLWLGTFE--------------------------------------DMDDE------- 241 (606)
T ss_dssp TCSCH----HHHHHHTTTCEEEEEECCCCT--------------------------------------TSCCC-------
T ss_pred CchhH----HHHhhhccccchhheechhhc--------------------------------------ccccc-------
Confidence 76521 112222222222222111110 00000
Q ss_pred cCCcchHHhhcCC--CCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCC
Q 044924 328 NGGFPNWLLENNT--RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSI 405 (740)
Q Consensus 328 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 405 (740)
.++...+..+. +++.++++++.+.+..+..+..+++|+.|++++|.++ .+|..+.. +++|++|++++|.+++..
T Consensus 242 --~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 242 --DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLC 317 (606)
T ss_dssp --CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGG
T ss_pred --ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCc
Confidence 11111122222 6777888888777777777788888888888888887 77776654 778888888888888777
Q ss_pred CccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcC--ccccCCCCCCCEEEcccCcCcccCCcccc
Q 044924 406 PSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHM--FTRNFNLTNLRWLQLESNHFVGEIPQSLS 483 (740)
Q Consensus 406 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 483 (740)
|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..|.
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 7788888899999999888877777776677889999999999888765 67788899999999999998878888888
Q ss_pred CCCCCCEEEccCCcCCCCCcc-cccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCC---CCccc-cccC
Q 044924 484 KCSSLEGLYLNNNSLSGKIPR-WLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGS---LPSCF-HLLS 558 (740)
Q Consensus 484 ~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~-~~~~ 558 (740)
.+++|++|++++|.+.+..+. .+.++++|+.|++++|.+++..|..+..+++|++|++++|.+.+. .+..+ .+++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 899999999999988766554 488899999999999999888888888999999999999988762 12233 3889
Q ss_pred ccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCC
Q 044924 559 IEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLS 638 (740)
Q Consensus 559 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 638 (740)
|+.|++++|.+++..+.. |.++++|++|+|++|++++..|..+.++++| +|++++|++++..|..+..+++|+.++++
T Consensus 478 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHA-FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp CCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred ccEEECCCCccCccChhh-hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 999999999998655554 9999999999999999999999999999999 99999999998889889999999999999
Q ss_pred CCccccCCCCCCCcccccccccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 639 NNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 639 ~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
+|++. |+|...+|..|+......+ .....++|.+|+.+.|..+.
T Consensus 556 ~N~~~-----------------c~c~~~~~~~w~~~~~~~~-~~~~~~~C~~p~~~~g~~l~ 599 (606)
T 3t6q_A 556 QNPLD-----------------CTCSNIYFLEWYKENMQKL-EDTEDTLCENPPLLRGVRLS 599 (606)
T ss_dssp TCCEE-----------------CSGGGHHHHHHHHHCGGGE-ECGGGCBEEESGGGTTCBGG
T ss_pred CCCcc-----------------ccCCcHHHHHHHHhCcccc-cCCCCCeeCCchHhCCCeee
Confidence 99998 6666666767765433222 33457889999999998876
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-52 Score=477.29 Aligned_cols=570 Identities=21% Similarity=0.207 Sum_probs=428.1
Q ss_pred CcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEc
Q 044924 10 LKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHL 89 (740)
Q Consensus 10 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l 89 (740)
-+.+|.++++++. +|..+. +++++|++++|.+.+ ++...|+++++|++|++++|.++.. .+..+.++++|++|++
T Consensus 6 ~~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 6 HEVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNL 80 (680)
T ss_dssp SSEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEEC
T ss_pred CCeeECCCCCccc-cccccC--CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEEC
Confidence 4688999988874 455554 699999999999984 6666899999999999999999887 7888999999999999
Q ss_pred cCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEec
Q 044924 90 SRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSL 169 (740)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 169 (740)
++|.++.... . .+.++++|++|++++|. +.+..+..+.. +++|++|++
T Consensus 81 ~~n~l~~l~~--~---------------------------~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-l~~L~~L~L 128 (680)
T 1ziw_A 81 QHNELSQLSD--K---------------------------TFAFCTNLTELHLMSNS--IQKIKNNPFVK-QKNLITLDL 128 (680)
T ss_dssp CSSCCCCCCT--T---------------------------TTTTCTTCSEEECCSSC--CCCCCSCTTTT-CTTCCEEEC
T ss_pred CCCccCccCh--h---------------------------hhccCCCCCEEECCCCc--cCccChhHccc-cCCCCEEEC
Confidence 9998875332 1 23444445555554442 22211122222 445555555
Q ss_pred cCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhh--cCCCCcEEEcCCCcccCCCCcccccCcCCccEEEc
Q 044924 170 SYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLA--NMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRL 246 (740)
Q Consensus 170 ~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 246 (740)
++| ..+. . +..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+..|. .++.+++|+.|++
T Consensus 129 s~n~l~~~--~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l 202 (680)
T 1ziw_A 129 SHNGLSST--K---LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFL 202 (680)
T ss_dssp CSSCCSCC--C---CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEEC
T ss_pred CCCccccc--C---chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhc
Confidence 544 2111 1 13456677777777777777665555443 346777777777777644333 6777777777777
Q ss_pred cCCcccccCCcc--ccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccC--CCccEEEc
Q 044924 247 SDNHFRIPISLE--PLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQ--HDLVNVDL 322 (740)
Q Consensus 247 ~~n~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l 322 (740)
.++.+....... .....++|+.|++++|.+... .|.++..+ ++|+.|++
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~---------------------------~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT---------------------------SNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE---------------------------CTTTTGGGGGSCCCEEEC
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCccccc---------------------------ChhHhhccCcCCCCEEEC
Confidence 776654211100 001235667777766655432 13333333 35888888
Q ss_pred cCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCc-----Cc---hhHhhhCCCCcEE
Q 044924 323 SHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGH-----IP---VEIGDILPSLISF 394 (740)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~---~~~~~~l~~L~~L 394 (740)
++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|+.|+++++...+. +| ...+..+++|++|
T Consensus 256 s~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 256 SYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp TTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCcCccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 888877554444 46888899999999988888888888899999999987754432 22 2234447899999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEeccCccccc-ccchhhhhc--CCCCcEEeCCCCcccCcCccccCCCCCCCEEEccc
Q 044924 395 NISMNALNGSIPSSFGNINSLQILDLSNNQLIG-EIPEHLAVG--CVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLES 471 (740)
Q Consensus 395 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 471 (740)
++++|.+++..+..|.++++|++|++++|.+.. .++...+.. .++|++|++++|.+.+..+.++..+++|+.|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 999999998888889999999999999987532 334333322 36899999999999998899999999999999999
Q ss_pred CcCcccCC-ccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCccc--CCCchhhhCCCCCcEEEcccCcCCC
Q 044924 472 NHFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLE--GPIPMEFCQLYSLQLLDISDNNISG 548 (740)
Q Consensus 472 n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~ 548 (740)
|.+.+.+| ..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+. +..|..|..+++|++|++++|++++
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 99987665 68899999999999999998888889999999999999999886 5678899999999999999999998
Q ss_pred CCCcccc-ccCccEEecCCccccccc-------cccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcc
Q 044924 549 SLPSCFH-LLSIEQVHLSKNMLRGQL-------KRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG 620 (740)
Q Consensus 549 ~~~~~~~-~~~L~~L~L~~n~~~~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 620 (740)
..+..+. +++|+.|++++|.+++.. +...|.++++|++|+|++|.++...+..|.++++|++|+|++|++++
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 8887665 899999999999988532 12237889999999999999996666789999999999999999997
Q ss_pred cCCccccCCCCCCEEeCCCCccccCCCCCC
Q 044924 621 EVPVQLCGLNQLQLLDLSNNNLHGHIPPCF 650 (740)
Q Consensus 621 ~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~ 650 (740)
..+..|..+++|+.|++++|++++..|..+
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 777778999999999999999997766544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-52 Score=470.48 Aligned_cols=574 Identities=20% Similarity=0.179 Sum_probs=348.8
Q ss_pred CcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEc
Q 044924 10 LKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHL 89 (740)
Q Consensus 10 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l 89 (740)
-++++.++++++. +|..+. +++++|++++|.+. .++...|+++++|++|++++|.++.. .+..|.++++|++|++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCccc-CCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeEC
Confidence 3567888777764 344443 67888888888887 45555788888888888888888765 5677888888888888
Q ss_pred cCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEec
Q 044924 90 SRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSL 169 (740)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 169 (740)
++|.++...+ ..++++++|++|++++|. +.+..+..+.. +++|++|++
T Consensus 88 s~n~l~~~~p-----------------------------~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-l~~L~~L~L 135 (606)
T 3vq2_A 88 TGNPIQSFSP-----------------------------GSFSGLTSLENLVAVETK--LASLESFPIGQ-LITLKKLNV 135 (606)
T ss_dssp TTCCCCCCCT-----------------------------TSSTTCTTCCEEECTTSC--CCCSSSSCCTT-CTTCCEEEC
T ss_pred CCCcccccCh-----------------------------hhcCCcccCCEEEccCCc--cccccccccCC-CCCCCEEeC
Confidence 8887765322 224444555555555542 21111112222 555555555
Q ss_pred cCC-CCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCc----EEEcCCCcccCCCCcccccCcCCccEE
Q 044924 170 SYS-TPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLR----ILDVSSNQLTGSISSSPLIHLTSIEEL 244 (740)
Q Consensus 170 ~~~-~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L 244 (740)
++| ..+. .+|..+.++++|++|++++|.+++..+..++.+++|+ .|++++|.+. .++...+... +|++|
T Consensus 136 ~~n~l~~~----~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L 209 (606)
T 3vq2_A 136 AHNFIHSC----KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHEL 209 (606)
T ss_dssp CSSCCCCC----CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEE
T ss_pred CCCcccce----echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeee
Confidence 554 1110 1235677788888888888888776666666665544 7888888877 4454344443 78888
Q ss_pred EccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEc-c
Q 044924 245 RLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDL-S 323 (740)
Q Consensus 245 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~ 323 (740)
++++|.+.+......+.++++++.+++..+.+..... +. ......+..+..+ .++.+++ .
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~----------l~--------~~~~~~~~~l~~l-~l~~l~l~~ 270 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN----------LE--------IFEPSIMEGLCDV-TIDEFRLTY 270 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC----------CS--------CCCGGGGTTGGGS-EEEEEEECC
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCc----------cc--------ccChHHhhhhhhc-cHhheeccc
Confidence 8888877654455566777777777765444332110 00 0001111112222 3555555 4
Q ss_pred CccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCC
Q 044924 324 HIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNG 403 (740)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 403 (740)
.+.+.+.+|. +..+++|+.++++++.+.... .+..+++|+.|++++|.+ +.+|.. .+++|++|++++|...+
T Consensus 271 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 271 TNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp CTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCE
T ss_pred cccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCcc
Confidence 4455555554 456677777777777665432 566666777777777776 366632 36667777777664433
Q ss_pred CCCccccCCCCCcEEeccCcccccc--cchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCC-c
Q 044924 404 SIPSSFGNINSLQILDLSNNQLIGE--IPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIP-Q 480 (740)
Q Consensus 404 ~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~ 480 (740)
.. .+..+++|++|++++|.+.+. ++..+ ..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ .
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHH-HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhh-ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChh
Confidence 22 455666666666666665532 13333 346666666666666554 23455555566666666655554444 3
Q ss_pred cccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccC-CCchhhhCCCCCcEEEcccCcCCCCCCccccccCc
Q 044924 481 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEG-PIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSI 559 (740)
Q Consensus 481 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 559 (740)
.+..+++|++|++++|.+.+..|..+.++++|++|++++|.+++ .+|..|..+++|++|++++|
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n--------------- 483 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC--------------- 483 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS---------------
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC---------------
Confidence 45555555555555555555555555555555555555555544 24444555555555555555
Q ss_pred cEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCC-CCCEEeCC
Q 044924 560 EQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLN-QLQLLDLS 638 (740)
Q Consensus 560 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~ 638 (740)
.+++..+. .|.++++|++|+|++|++++.+|..|.++++|++|+|++|+++ .+|..+..++ +|++++++
T Consensus 484 --------~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 484 --------QLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp --------CCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECC
T ss_pred --------cCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEcc
Confidence 44433333 3889999999999999999988999999999999999999999 7788898887 69999999
Q ss_pred CCccccCCCCCCCcccccccccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 639 NNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 639 ~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
+|++. |+|...+|..|+..... .......++|.+|+.+.|..+.
T Consensus 554 ~N~~~-----------------c~c~~~~~~~~l~~~~~-~~~~~~~~~C~~p~~~~~~~l~ 597 (606)
T 3vq2_A 554 NNSVA-----------------CICEHQKFLQWVKEQKQ-FLVNVEQMTCATPVEMNTSLVL 597 (606)
T ss_dssp SCCCC-----------------CSSTTHHHHTTTTTSSS-SBSSGGGCCCC-----------
T ss_pred CCCcc-----------------cCCccHHHHHHHHcCcc-cccCCccceeCCChHhCCCEee
Confidence 99998 55666666666544322 2234567899999999998877
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=463.46 Aligned_cols=566 Identities=20% Similarity=0.224 Sum_probs=350.7
Q ss_pred CCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEE
Q 044924 8 TNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSL 87 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 87 (740)
++|++|||++|.+++..+..|+++++|++|+|++|...+.+++..|+++++|++|+|++|.++.. .|..|.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEe
Confidence 56777777777777666777777777777777777655566555677777777777777777665 56777777777777
Q ss_pred EccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEE
Q 044924 88 HLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYL 167 (740)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 167 (740)
++++|.+++.... ...+.++++|++|++++|.+ .+..
T Consensus 103 ~Ls~n~l~~~~~~---------------------------~~~~~~L~~L~~L~Ls~N~l--~~~~-------------- 139 (844)
T 3j0a_A 103 RLYFCGLSDAVLK---------------------------DGYFRNLKALTRLDLSKNQI--RSLY-------------- 139 (844)
T ss_dssp ECTTCCCSSCCST---------------------------TCCCSSCSSCCEEEEESCCC--CCCC--------------
T ss_pred eCcCCCCCccccc---------------------------CccccccCCCCEEECCCCcc--cccc--------------
Confidence 7777766542111 12366777777777777722 1110
Q ss_pred eccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcC--CCCcEEEcCCCcccCCCCcccccCcCC-----
Q 044924 168 SLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANM--TSLRILDVSSNQLTGSISSSPLIHLTS----- 240 (740)
Q Consensus 168 ~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~----- 240 (740)
. +..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|. .++.+++
T Consensus 140 -----------~---~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~ 204 (844)
T 3j0a_A 140 -----------L---HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNM 204 (844)
T ss_dssp -----------C---CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTC
T ss_pred -----------c---chhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCCccccC
Confidence 0 1346667777777777777776667777666 7777777777777765554 4444444
Q ss_pred -ccEEEccCCcccccCCccccc--cCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCc
Q 044924 241 -IEELRLSDNHFRIPISLEPLF--NHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDL 317 (740)
Q Consensus 241 -L~~L~l~~n~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L 317 (740)
|++|++++|.+.+..+..... ...+++.+.+..+.....
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------------------------------------- 246 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------------------------------------- 246 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------------------------------------
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------------------------------------
Confidence 777777777665433322111 112333333332211100
Q ss_pred cEEEccCccccCCcchHHhhc--CCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEE
Q 044924 318 VNVDLSHIKMNGGFPNWLLEN--NTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFN 395 (740)
Q Consensus 318 ~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 395 (740)
...+.+.+. ....+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+. .+++|++|+
T Consensus 247 ----~~~~~l~~~-~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~ 320 (844)
T 3j0a_A 247 ----FGFHNIKDP-DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLN 320 (844)
T ss_dssp ----SSCSSSTTG-GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEE
T ss_pred ----ccccccCCC-ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEE
Confidence 000001000 0000111 25667777777766666666667777777777777777644443333 367777777
Q ss_pred ccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCc
Q 044924 396 ISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFV 475 (740)
Q Consensus 396 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 475 (740)
+++|.+++..|..|..+++|++|++++|.+. .++...+..+++|++|++++|.+++.. .+++|+.|++++|.++
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc
Confidence 7777777666777777777777777777765 444444456777777777777766422 2667777777777776
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCC-cccccCCCCCceecccCCcccCCCch-hhhCCCCCcEEEcccCcCCCC----
Q 044924 476 GEIPQSLSKCSSLEGLYLNNNSLSGKI-PRWLGNLKGLKHIIMPENHLEGPIPM-EFCQLYSLQLLDISDNNISGS---- 549 (740)
Q Consensus 476 ~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~---- 549 (740)
.+|.. ..+++.|++++|.+.+.. +..+.++++|+.|++++|.+++..+. .+..+++|++|++++|.+...
T Consensus 395 -~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 395 -TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp -CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred -ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccc
Confidence 44432 346777777777776432 22345677777777777777644332 344567777777777776532
Q ss_pred -CCcccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCcccc
Q 044924 550 -LPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLC 627 (740)
Q Consensus 550 -~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 627 (740)
.+..+. +++|+.|+|++|.+++.. +..|.++++|+.|+|++|++++.+|..+. ++|++|+|++|++++..|..|
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~- 546 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLP-PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF- 546 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCC-TTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC-
T ss_pred cchhhhcCcccccEEECCCCcccccC-hhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh-
Confidence 223333 566777777777776433 33366777777777777777766555555 677777777777776666554
Q ss_pred CCCCCCEEeCCCCccccCCCCCCCcccccccccCCCCCcccccccccccccccccceeEEEeccccccccCCCCCCCcCC
Q 044924 628 GLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLNPPMDPDI 707 (740)
Q Consensus 628 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 707 (740)
.+|+.+++++|++. |+|.+.+|..|+......+......+.|.+|+...|.++. .
T Consensus 547 --~~L~~l~l~~Np~~-----------------C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~------~ 601 (844)
T 3j0a_A 547 --VSLSVLDITHNKFI-----------------CECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLF------S 601 (844)
T ss_dssp --SSCCEEEEEEECCC-----------------CSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTT------T
T ss_pred --CCcCEEEecCCCcc-----------------cccccHHHHHHHHhcCcccccccccCccCCchhhCCCccc------c
Confidence 36667777777766 7777777777776555444455667899999999998876 3
Q ss_pred CCCcCccc
Q 044924 708 SSRKGCLE 715 (740)
Q Consensus 708 ~~~~~c~~ 715 (740)
.+.+.|..
T Consensus 602 ~~~~~C~~ 609 (844)
T 3j0a_A 602 LSTEGCDE 609 (844)
T ss_dssp CCCCCC--
T ss_pred CccccCCc
Confidence 33346764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-47 Score=428.92 Aligned_cols=517 Identities=17% Similarity=0.166 Sum_probs=374.1
Q ss_pred CCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEccCcccCCCcchhhccCCCCcccee
Q 044924 34 LTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTL 113 (740)
Q Consensus 34 L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 113 (740)
-+.++.++..+. .+|. .+. ..+++|++++|.++.. .+..|.++++|++|++++|.+....+
T Consensus 14 ~~~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~-------------- 74 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHE-------------- 74 (606)
T ss_dssp TTEEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECT--------------
T ss_pred CceEECCCCCcc-cCcC-CCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeCh--------------
Confidence 457888888876 5775 443 3799999999999976 68899999999999999998764211
Q ss_pred eecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEeccCCCCCCCcccchhhhhcCCCCCc
Q 044924 114 YLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQ 193 (740)
Q Consensus 114 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~ 193 (740)
..+.++++|++|++++| ...+..+. .+..+++|+
T Consensus 75 ---------------~~~~~l~~L~~L~Ls~n--~l~~~~~~-----------------------------~~~~l~~L~ 108 (606)
T 3t6q_A 75 ---------------DTFQSQHRLDTLVLTAN--PLIFMAET-----------------------------ALSGPKALK 108 (606)
T ss_dssp ---------------TTTTTCTTCCEEECTTC--CCSEECTT-----------------------------TTSSCTTCC
T ss_pred ---------------hhccCccccCeeeCCCC--cccccChh-----------------------------hhccccccc
Confidence 34778889999999988 33332233 334444444
Q ss_pred EEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCccc--eeec
Q 044924 194 ELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQ--IFDA 271 (740)
Q Consensus 194 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~--~L~l 271 (740)
+|++++|.+++..+..+.++++|++|++++|.+.+ ++...+..+++|++|++++|.+.+ .....+..+++|+ .+++
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEEC
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEec
Confidence 44444444443333444445555555555554442 111123334555555555554442 2223344444444 4444
Q ss_pred cCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCC
Q 044924 272 YNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDS 351 (740)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 351 (740)
++|.+.... .......+|+.++++++. .++.. +..+..++...+....
T Consensus 187 ~~n~l~~~~----------------------------~~~~~~~~L~~L~l~~~~---~~~~~-~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 187 NGNDIAGIE----------------------------PGAFDSAVFQSLNFGGTQ---NLLVI-FKGLKNSTIQSLWLGT 234 (606)
T ss_dssp TTCCCCEEC----------------------------TTTTTTCEEEEEECTTCS---CHHHH-HHHTTTCEEEEEECCC
T ss_pred CCCccCccC----------------------------hhHhhhccccccccCCch---hHHHH-hhhccccchhheechh
Confidence 444443321 111122345555555554 12222 2344444333332222
Q ss_pred CCC-----CCCCCCCCCC--CccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcc
Q 044924 352 LAG-----PFRLPIHSHK--QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQ 424 (740)
Q Consensus 352 ~~~-----~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 424 (740)
+.. .....+..+. +++.|++++|.++ .++...+..+++|++|++++|.++ .+|..+.++++|++|++++|.
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 221 1112222222 7999999999998 556555555899999999999998 788889999999999999999
Q ss_pred cccccchhhhhcCCCCcEEeCCCCcccCcCc-cccCCCCCCCEEEcccCcCcccC--CccccCCCCCCEEEccCCcCCCC
Q 044924 425 LIGEIPEHLAVGCVNLEYLTLSNNNLEGHMF-TRNFNLTNLRWLQLESNHFVGEI--PQSLSKCSSLEGLYLNNNSLSGK 501 (740)
Q Consensus 425 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~ 501 (740)
+.+..|.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.
T Consensus 313 l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 313 FENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred cCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 88544544 4579999999999999886554 45889999999999999998665 77899999999999999999988
Q ss_pred CcccccCCCCCceecccCCcccCCCch-hhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCcccccc-cc-ccc
Q 044924 502 IPRWLGNLKGLKHIIMPENHLEGPIPM-EFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQ-LK-RGT 577 (740)
Q Consensus 502 ~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~-~~-~~~ 577 (740)
.|..|..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..+. +++|+.|++++|.+.+. ++ ...
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence 889999999999999999999876654 488999999999999999988887766 89999999999999863 22 234
Q ss_pred cccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcc
Q 044924 578 FFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNT 653 (740)
Q Consensus 578 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~ 653 (740)
+..+++|++|++++|.+++..|..|.++++|++|+|++|++++..|..+..+++| +|++++|++++..|..+..+
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred hccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence 8999999999999999999989999999999999999999999999999999999 99999999998777765543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.6e-47 Score=427.19 Aligned_cols=510 Identities=23% Similarity=0.284 Sum_probs=326.0
Q ss_pred CCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEE
Q 044924 8 TNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSL 87 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 87 (740)
++|++|+|++|.+++..+.+|+++++|++|++++|.+. .+++..|+++++|++|++++|.++.. .|..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEE
Confidence 67999999999999888889999999999999999998 46555899999999999999999886 68999999999999
Q ss_pred EccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhc--CCC-c
Q 044924 88 HLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGEL--MPS-L 164 (740)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~-L 164 (740)
++++|.++..... .++.+.+|++|++.+|.......+ ..++++++|++|++++|. +.+..+..+... ++. +
T Consensus 110 ~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 110 VAVETKLASLESF--PIGQLITLKKLNVAHNFIHSCKLP--AYFSNLTNLVHVDLSYNY--IQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp ECTTSCCCCSSSS--CCTTCTTCCEEECCSSCCCCCCCC--GGGGTCTTCCEEECCSSC--CCEECTTTTHHHHHCTTCC
T ss_pred EccCCcccccccc--ccCCCCCCCEEeCCCCcccceech--HhHhhcCCCCEEEccCCc--ceecChhhhhhhhcccccc
Confidence 9999998765432 256778888888888776543322 457778888888888873 333222222220 222 4
Q ss_pred eEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCcccc-CCChhhhcCCCCcEEEcCCCcccCC-----CCcccccCc
Q 044924 165 KYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQLTGS-----ISSSPLIHL 238 (740)
Q Consensus 165 ~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~l~~l 238 (740)
+.|++++| .+..++.......+|++|++++|.+++ ..+..+.+++.|+.+++..+.+.+. ++...+..+
T Consensus 184 ~~L~l~~n-----~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 184 LSLDMSLN-----PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CEEECTTC-----CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ceeeccCC-----CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 46777664 233333344444467777777776652 3456666677776666654433211 111111111
Q ss_pred C--CccEEEc-cCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCC
Q 044924 239 T--SIEELRL-SDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQH 315 (740)
Q Consensus 239 ~--~L~~L~l-~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 315 (740)
. .++++++ ..+.+.+ ..|. +..++
T Consensus 259 ~~l~l~~l~l~~~~~~~~----------------------------------------------------~~~~-~~~l~ 285 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSD----------------------------------------------------DIVK-FHCLA 285 (606)
T ss_dssp GGSEEEEEEECCCTTCCG----------------------------------------------------GGGS-CGGGT
T ss_pred hhccHhheeccccccccc----------------------------------------------------cccc-cccCC
Confidence 1 2233333 2222222 2222 44455
Q ss_pred CccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEE
Q 044924 316 DLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFN 395 (740)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 395 (740)
+|+.++++++.+. .++ .+..+++|++|++++|.+ +.++ .+ .+++|+.|++++|...+.++ +. .+++|++|+
T Consensus 286 ~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~--~~-~l~~L~~L~ 356 (606)
T 3vq2_A 286 NVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISFK--KV-ALPSLSYLD 356 (606)
T ss_dssp TCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEECC--CC-CCTTCCEEE
T ss_pred CCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccchh--hc-cCCCCCEEE
Confidence 6666666666553 333 134556666666666666 3333 33 66666666666664433331 11 256677777
Q ss_pred ccCCcCCCC--CCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCc-cccCCCCCCCEEEcccC
Q 044924 396 ISMNALNGS--IPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMF-TRNFNLTNLRWLQLESN 472 (740)
Q Consensus 396 l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 472 (740)
+++|.+++. .+..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF-MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCC-TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhc-cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 777766644 2556667777777777777665 355333 356777777777777776655 56667777777777777
Q ss_pred cCcccCCccccCCCCCCEEEccCCcCCC-CCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCC
Q 044924 473 HFVGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLP 551 (740)
Q Consensus 473 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 551 (740)
.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+++..|..|.++++|++|++++|++++..|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 7776677777777777777777777765 356677777778888887777777777777777777777777777764333
Q ss_pred ccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcC-CCcEEEcCCCcCc
Q 044924 552 SCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLS-QLRHLILGHNNLE 619 (740)
Q Consensus 552 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 619 (740)
.. |.++++|++|+|++|+++ .+|..+..++ +|++|++++|++.
T Consensus 515 ~~------------------------~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 515 SH------------------------YNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp GG------------------------TTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred HH------------------------ccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence 22 445555555555555555 3444455554 3566666665555
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-46 Score=416.80 Aligned_cols=272 Identities=23% Similarity=0.226 Sum_probs=209.9
Q ss_pred ccEEEcccC-cCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEe
Q 044924 366 LRLLDVSNN-NFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLT 444 (740)
Q Consensus 366 L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 444 (740)
++.+++.++ .+.+.+|..+.. +++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~ 331 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLT 331 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEE
T ss_pred hhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEe
Confidence 445555555 444444444433 667777777777776 466666666 7777777777765 5655 2467778888
Q ss_pred CCCCcccCcCccccCCCCCCCEEEcccCcCcccC--CccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcc
Q 044924 445 LSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEI--PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHL 522 (740)
Q Consensus 445 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 522 (740)
+++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. ..+..+++|++|++++|.+
T Consensus 332 l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EEEETCTTCCEEECTTSEE
T ss_pred CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-ccccccCCCCEEEccCCcc
Confidence 887776655443 56778888888888776443 566777888888888888877443 3478888888888888888
Q ss_pred cCCCc-hhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCcccc-ccccccccccCCcceEEEccCCcCCCCCC
Q 044924 523 EGPIP-MEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLR-GQLKRGTFFNCSSLVTLDLSYNRLNGSIP 599 (740)
Q Consensus 523 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 599 (740)
.+..+ ..+..+++|++|++++|.+.+..+..+. +++|+.|++++|.+. +.+|.. +..+++|++|+|++|++++..|
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECT
T ss_pred ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCccccCCh
Confidence 76655 4677888888888888888877776665 788888888888887 456655 9999999999999999998889
Q ss_pred ccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCC
Q 044924 600 NWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPP 648 (740)
Q Consensus 600 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~ 648 (740)
..|..+++|++|++++|++++..|..|..+++|+.|++++|++.|.+|.
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999999988888899999999999999999976654
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-44 Score=419.62 Aligned_cols=519 Identities=23% Similarity=0.212 Sum_probs=375.0
Q ss_pred cEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEcc
Q 044924 11 KMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLS 90 (740)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~ 90 (740)
++.|.++++++.+ |. ..++|++|+|++|.+.+ +.+..|.++++|++|++++|.....-.+..|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCC-CS---SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCC-CC---CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 4566777777643 43 34678888888888774 4444788888888888888754433126677788888888888
Q ss_pred CcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceEEecc
Q 044924 91 RVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKYLSLS 170 (740)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 170 (740)
+|.+.... +..+.++++|++|++++|. ..+.++
T Consensus 82 ~N~l~~~~-----------------------------p~~~~~l~~L~~L~Ls~n~--l~~~~~---------------- 114 (844)
T 3j0a_A 82 SSKIYFLH-----------------------------PDAFQGLFHLFELRLYFCG--LSDAVL---------------- 114 (844)
T ss_dssp TCCCCEEC-----------------------------TTSSCSCSSCCCEECTTCC--CSSCCS----------------
T ss_pred CCcCcccC-----------------------------HhHccCCcccCEeeCcCCC--CCcccc----------------
Confidence 77665321 1345666777777777662 211100
Q ss_pred CCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCC-hhhhcCCCCcEEEcCCCcccCCCCcccccCc--CCccEEEcc
Q 044924 171 YSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLIHL--TSIEELRLS 247 (740)
Q Consensus 171 ~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l--~~L~~L~l~ 247 (740)
. ...+..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+. .+..+ ++|+.|+++
T Consensus 115 ---------~--~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 115 ---------K--DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ---------T--TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEEC
T ss_pred ---------c--CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECC
Confidence 0 0236677788888888888876544 5678888888888888887755554 66666 778888888
Q ss_pred CCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccc
Q 044924 248 DNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKM 327 (740)
Q Consensus 248 ~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 327 (740)
+|.+.+..+. .+..+.+ .+ ....|+.|++++|.+
T Consensus 183 ~n~l~~~~~~-~~~~~~~--------------------------------------------~~-~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 183 ANSLYSRVSV-DWGKCMN--------------------------------------------PF-RNMVLEILDVSGNGW 216 (844)
T ss_dssp CSBSCCCCCC-CCCSSSC--------------------------------------------TT-TTCCBSEEBCSSCCS
T ss_pred CCcccccccc-chhhcCC--------------------------------------------cc-ccCceeEEecCCCcC
Confidence 8777643221 1111111 00 011345555555544
Q ss_pred cCCcchHHhhc--CCCCCEEEecCC---------CCCCCCCCCCCC--CCCccEEEcccCcCCCcCchhHhhhCCCCcEE
Q 044924 328 NGGFPNWLLEN--NTRLETLSLVND---------SLAGPFRLPIHS--HKQLRLLDVSNNNFQGHIPVEIGDILPSLISF 394 (740)
Q Consensus 328 ~~~~~~~~~~~--~~~L~~L~l~~~---------~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 394 (740)
.+..+..+... ...++.+.+..+ .+.......+.. .++|+.|++++|.+.+..+.. +..+++|++|
T Consensus 217 ~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L 295 (844)
T 3j0a_A 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVL 295 (844)
T ss_dssp STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEE
T ss_pred chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEE
Confidence 44444433222 134455554422 222222333444 378999999999998554444 4458999999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcC
Q 044924 395 NISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF 474 (740)
Q Consensus 395 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 474 (740)
++++|.+++..|..|.++++|++|++++|.+.+..+. .+.++++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 9999999988889999999999999999998754454 445799999999999999998888999999999999999998
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCC-chhhhCCCCCcEEEcccCcCCCCCCc-
Q 044924 475 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPI-PMEFCQLYSLQLLDISDNNISGSLPS- 552 (740)
Q Consensus 475 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~- 552 (740)
++ + ..+++|+.|++++|.+. .+|.. ..+++.|++++|.+++.. +..+.++++|++|++++|++++..+.
T Consensus 375 ~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 375 TT-I----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp CC-C----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred Cc-c----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 73 2 33789999999999998 44543 578999999999998643 33456899999999999999876554
Q ss_pred -cccccCccEEecCCccccccc----cccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCcccc
Q 044924 553 -CFHLLSIEQVHLSKNMLRGQL----KRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLC 627 (740)
Q Consensus 553 -~~~~~~L~~L~L~~n~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 627 (740)
...+++|+.|++++|.+.+.. ....|.++++|+.|+|++|.+++.+|..|.++++|++|+|++|++++..|..+.
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 233789999999999987332 223488899999999999999999999999999999999999999977666665
Q ss_pred CCCCCCEEeCCCCccccCCCCCCCc
Q 044924 628 GLNQLQLLDLSNNNLHGHIPPCFDN 652 (740)
Q Consensus 628 ~l~~L~~L~l~~n~~~~~~p~~~~~ 652 (740)
++|+.||+++|++++..|..+..
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~~~ 548 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVFVS 548 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCCSS
T ss_pred --ccccEEECCCCcCCCCChhHhCC
Confidence 89999999999999999887654
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.2e-44 Score=404.71 Aligned_cols=244 Identities=21% Similarity=0.240 Sum_probs=161.4
Q ss_pred CCCCcEEeCCCCcccC--cCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCc-ccccCCCCCc
Q 044924 437 CVNLEYLTLSNNNLEG--HMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLKGLK 513 (740)
Q Consensus 437 ~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~ 513 (740)
+++|+.++++.|.+.. ..+..+..+.+|+.+++..+... ..+..+..+++|+.+++..+......+ ..+..+++++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccc
Confidence 4444444444444331 12223334444555555554443 233344455555555555544433222 2345555555
Q ss_pred eecccCCcccCCCchhhhCCCCCcEEEcccCcCC-CCCCcccc-ccCccEEecCCccccccccccccccCCcceEEEccC
Q 044924 514 HIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS-GSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSY 591 (740)
Q Consensus 514 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 591 (740)
.++++.|.+.+..+..+..+++|++|++++|.+. +..|..+. +++|+.|+|++|++++..| ..|.++++|++|+|++
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSH 527 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCC
Confidence 6666666555555555555666666666665532 23344443 5566666666666664434 3489999999999999
Q ss_pred CcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCC-CCCCEEeCCCCccccCCCCCCCcccccccccCCCCCccccc
Q 044924 592 NRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGL-NQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFET 670 (740)
Q Consensus 592 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 670 (740)
|++++..|..|.++++|++|+|++|++++..|..+..+ ++|++|++++|+|. |+|.+.+|..
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~-----------------C~C~~~~~~~ 590 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA-----------------CTCEHQSFLQ 590 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC-----------------CSGGGHHHHH
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc-----------------ccCCcHHHHH
Confidence 99999999999999999999999999999999999988 68999999999998 8889999999
Q ss_pred ccccccccccccceeEEEeccccccccCCC
Q 044924 671 SLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
|+......+ .....++|.+|+.+.|.++.
T Consensus 591 wl~~~~~~~-~~~~~~~C~~P~~~~g~~l~ 619 (635)
T 4g8a_A 591 WIKDQRQLL-VEVERMECATPSDKQGMPVL 619 (635)
T ss_dssp HHHHTTTTB-SCGGGCBBCSSTTTTTCBGG
T ss_pred HHHhCCCcc-CCCCCceeCCchHHCCCEee
Confidence 886544332 34457899999999999877
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.6e-43 Score=389.74 Aligned_cols=398 Identities=18% Similarity=0.166 Sum_probs=293.4
Q ss_pred hhcCCCCCcEEeccCCccccC-CChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccC
Q 044924 185 GLCSLMHMQELHIAHNDLRGS-LPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNH 263 (740)
Q Consensus 185 ~~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l 263 (740)
.+..+++|++|++++|.+++. .+..++++++|++|++++|.+.+.+|...++.+++|++|++++|.+.+..
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------- 164 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-------- 164 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC--------
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC--------
Confidence 356667777777777777652 45567777777777777777555666556777777777777777665321
Q ss_pred CccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCC
Q 044924 264 SRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLE 343 (740)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 343 (740)
|..+..+++|+.|+++++.+. .++.++++.+++|+
T Consensus 165 --------------------------------------------~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 165 --------------------------------------------SQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199 (549)
T ss_dssp --------------------------------------------TTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBS
T ss_pred --------------------------------------------hhhhhccccCceEecccCccc-ccchhhHhhccccc
Confidence 233444555666666665543 45555556677788
Q ss_pred EEEecCCCCCCCCC---CCCCCCCCccEEEcccCcCCCcCchhHh---hhCCCCcEEEccCCcCCCCC------CccccC
Q 044924 344 TLSLVNDSLAGPFR---LPIHSHKQLRLLDVSNNNFQGHIPVEIG---DILPSLISFNISMNALNGSI------PSSFGN 411 (740)
Q Consensus 344 ~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~------~~~~~~ 411 (740)
.|++++|.+.+... .....+++|+.|++++|.+++..+..+. ..+++++.+++++|.+.+.. ...+..
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 88888777766421 1234567888888888888765554433 23568899999988776421 123566
Q ss_pred CCCCcEEeccCcccccc-----cchhhhhcCCCCcEEeCCCCcccCcCcccc-CCCCCCCEEEcccCcCcccCC---ccc
Q 044924 412 INSLQILDLSNNQLIGE-----IPEHLAVGCVNLEYLTLSNNNLEGHMFTRN-FNLTNLRWLQLESNHFVGEIP---QSL 482 (740)
Q Consensus 412 l~~L~~L~l~~n~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~---~~~ 482 (740)
+++|+.|++.++.+... ++. ++...++|++|++++|.+.. +|..+ ..+++|++|++++|.+.+..| ..+
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred hcccccccccccccchhhhcccchh-hhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 78889999888865421 111 22346789999999998875 44444 578999999999999887653 346
Q ss_pred cCCCCCCEEEccCCcCCCCCc--ccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCcc
Q 044924 483 SKCSSLEGLYLNNNSLSGKIP--RWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIE 560 (740)
Q Consensus 483 ~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~ 560 (740)
+.+++|++|++++|.+.+..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+....... ..+|+
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~ 434 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLE 434 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCS
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCce
Confidence 788999999999999875432 45888999999999999998 57778888999999999999987543322 36899
Q ss_pred EEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCC
Q 044924 561 QVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNN 640 (740)
Q Consensus 561 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 640 (740)
.|++++|++++. ...+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|..+..+++|+.|++++|
T Consensus 435 ~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 435 VLDVSNNNLDSF-----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp EEECCSSCCSCC-----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred EEECCCCChhhh-----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 999999998864 357899999999999999 5665 567899999999999999888888999999999999999
Q ss_pred ccccCCC
Q 044924 641 NLHGHIP 647 (740)
Q Consensus 641 ~~~~~~p 647 (740)
++.|.+|
T Consensus 508 ~~~~~~~ 514 (549)
T 2z81_A 508 PWDCSCP 514 (549)
T ss_dssp CBCCCHH
T ss_pred CccCCCc
Confidence 9986554
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=392.42 Aligned_cols=283 Identities=21% Similarity=0.239 Sum_probs=179.8
Q ss_pred CCCCCCCccEEEcccCcCCCcCchhHhh--hCCCCcEEEccCCcCCCCCCccc-----cCCCCCcEEeccCcccccccch
Q 044924 359 PIHSHKQLRLLDVSNNNFQGHIPVEIGD--ILPSLISFNISMNALNGSIPSSF-----GNINSLQILDLSNNQLIGEIPE 431 (740)
Q Consensus 359 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~ 431 (740)
.+..+++|+.|+++++.+.+..+..+.. ..++|++|++++|.+++.+|..+ ..++.|+.+++++|.+ .+|.
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~ 292 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ 292 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch
Confidence 3455666777777776665433332221 14589999999999888888877 8888899999988876 5663
Q ss_pred -hhhhc--CCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCC--CCcccc
Q 044924 432 -HLAVG--CVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSG--KIPRWL 506 (740)
Q Consensus 432 -~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~ 506 (740)
.+... ..+|++|++++|.+..... ...+++|++|++++|.+++..|..++.+++|++|++++|.+.+ .+|..+
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 370 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred hhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH
Confidence 33211 2567777777776654221 1345555555555555554455555555555555555555543 223334
Q ss_pred cCCCCCceecccCCcccCCCch-hhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcce
Q 044924 507 GNLKGLKHIIMPENHLEGPIPM-EFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLV 585 (740)
Q Consensus 507 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 585 (740)
..+++|++|++++|.+++.+|. .+.. +++|+.|++++|.+++.++.. +. ++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~-----------------------l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~ 424 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSW-----------------------TKSLLSLNMSSNILTDTIFRC-LP--PRIK 424 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCC-----------------------CTTCCEEECCSSCCCGGGGGS-CC--TTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhcc-----------------------CccCCEEECcCCCCCcchhhh-hc--ccCC
Confidence 4444444444444444432222 2333 455555555555555454443 32 7899
Q ss_pred EEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCcc-ccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCCC
Q 044924 586 TLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSS 664 (740)
Q Consensus 586 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~ 664 (740)
+|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++. |+|.
T Consensus 425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~-----------------c~c~ 485 (520)
T 2z7x_B 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD-----------------CSCP 485 (520)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC-----------------CCHH
T ss_pred EEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc-----------------ccCC
Confidence 9999999999 77877779999999999999999 56665 899999999999999998 5555
Q ss_pred Cccc-ccccccccccccccceeEEEecccc
Q 044924 665 LKPF-ETSLVMESGMIYAEKTVMVLSSSSS 693 (740)
Q Consensus 665 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~ 693 (740)
+.+| ..|+..... .....++|.+|..
T Consensus 486 ~~~~~~~~~~~~~~---~~~~~~~C~~p~~ 512 (520)
T 2z7x_B 486 RIDYLSRWLNKNSQ---KEQGSAKCSGSGK 512 (520)
T ss_dssp HHHHHHHHHHHTTT---TEESCCBBTTTCC
T ss_pred chHHHHHHHHhccc---cCCCCCCcCCccc
Confidence 5555 555443221 1335678888744
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-42 Score=385.43 Aligned_cols=495 Identities=19% Similarity=0.238 Sum_probs=301.7
Q ss_pred CCCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcE
Q 044924 7 LTNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKS 86 (740)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 86 (740)
|+...+.|.+++.++. +|..+. ++|++|++++|.+.+ +++..|+++++|++|++++|.+++. .+..|.++++|++
T Consensus 4 C~~~~~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 78 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred CCCCceEECCCCcccc-ccccCC--CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCE
Confidence 4445556777777763 344343 678888888888764 4444788888888888888887765 5677888888888
Q ss_pred EEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCceE
Q 044924 87 LHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSLKY 166 (740)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 166 (740)
|++++|.+++.... .++.+++|++|++++|.......+ ..+.++++|++|++++|. ..+.
T Consensus 79 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l~~L~~L~L~~n~--~~~~-------------- 138 (549)
T 2z81_A 79 LDLSDNHLSSLSSS--WFGPLSSLKYLNLMGNPYQTLGVT--SLFPNLTNLQTLRIGNVE--TFSE-------------- 138 (549)
T ss_dssp EECTTSCCCSCCHH--HHTTCTTCCEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESS--SCCE--------------
T ss_pred EECCCCccCccCHH--HhccCCCCcEEECCCCcccccchh--hhhhccCCccEEECCCCc--cccc--------------
Confidence 88888877664332 123455555555555543321111 234555555555555551 1111
Q ss_pred EeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEc
Q 044924 167 LSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRL 246 (740)
Q Consensus 167 L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 246 (740)
++ +..+..+++|++|++++|.+++..|..+..+++|++|+++.|.+. .+|...+..+++|++|++
T Consensus 139 ------------~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 139 ------------IR--RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLEL 203 (549)
T ss_dssp ------------EC--TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEE
T ss_pred ------------cC--HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEc
Confidence 11 134666777777777777777777777777777777777777765 444434456777777777
Q ss_pred cCCcccccC--CccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccC
Q 044924 247 SDNHFRIPI--SLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSH 324 (740)
Q Consensus 247 ~~n~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 324 (740)
++|.+.+.. +......+ ++|+.+++++
T Consensus 204 ~~n~l~~~~~~~~~~~~~~---------------------------------------------------~~L~~L~l~~ 232 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVS---------------------------------------------------SPMKKLAFRG 232 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCC---------------------------------------------------CCCCEEEEES
T ss_pred cCCccccccccccchhhhh---------------------------------------------------hcccceeccc
Confidence 777766421 11111223 3444555554
Q ss_pred ccccCCcchHH---hhcCCCCCEEEecCCCCCCCCC------CCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEE
Q 044924 325 IKMNGGFPNWL---LENNTRLETLSLVNDSLAGPFR------LPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFN 395 (740)
Q Consensus 325 ~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 395 (740)
+.+.+..+..+ +..+++|+.+++++|.+.+... ..+..+++++.+++.++.+... .. .
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~-----~------- 299 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF-YL-----F------- 299 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG-GG-----S-------
T ss_pred cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh-hh-----c-------
Confidence 44433222221 2345566666666665543211 1234455566666666554311 00 0
Q ss_pred ccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCc---cccCCCCCCCEEEcccC
Q 044924 396 ISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMF---TRNFNLTNLRWLQLESN 472 (740)
Q Consensus 396 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n 472 (740)
...+..+...++|+.|++++|.+. .+|..++..+++|++|++++|.+.+..+ ..+..+++|+.|++++|
T Consensus 300 -------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 300 -------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp -------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred -------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 001111222345556666665544 5555554456666666666666655432 23455666677777666
Q ss_pred cCcccCC--ccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCC
Q 044924 473 HFVGEIP--QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL 550 (740)
Q Consensus 473 ~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 550 (740)
.+++..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++ +|..+ .++|++|++++|++++.+
T Consensus 372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC
T ss_pred cccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc
Confidence 6653321 34666677777777777766 456666677777777777777763 33332 257788888888777643
Q ss_pred CccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCC
Q 044924 551 PSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVP 623 (740)
Q Consensus 551 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 623 (740)
..+++|+.|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|++|++++|++.+..|
T Consensus 448 ---~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 ---LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 24677888888888887 6665 4568999999999999999888899999999999999999875544
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-42 Score=390.45 Aligned_cols=451 Identities=16% Similarity=0.175 Sum_probs=356.1
Q ss_pred CCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcc------cC------CCCcccccCcCCccEEEccCCcccccCCc
Q 044924 190 MHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQL------TG------SISSSPLIHLTSIEELRLSDNHFRIPISL 257 (740)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l------~~------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 257 (740)
.+++.|+|+++.++|.+|..++++++|++|+|++|.+ .+ .+|... +..|+ ++++.+.+.+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 4788888888888888888888888888888888865 22 233211 34445 55555555443322
Q ss_pred cccccCCccceeeccCCcccccccCCCCCCCccccceeeecc-ccCCCCCcchhhccCCCccEEEccCccccCC------
Q 044924 258 EPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSF-GYGDGVTFPKFLYHQHDLVNVDLSHIKMNGG------ 330 (740)
Q Consensus 258 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------ 330 (740)
..-..+..+..+++....+.. .....++.+.+.. .+...+ +|..++.+++|++|++++|.+.+.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~--------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 227 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK--------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW 227 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC--------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hHHHHHHHHhhcCcccccccc--------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccc
Confidence 111112222222322222111 0111222232222 223334 899999999999999999999875
Q ss_pred -----------cchHHhh--cCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCc-CCC-cCchhHhhh-----CCC
Q 044924 331 -----------FPNWLLE--NNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNN-FQG-HIPVEIGDI-----LPS 390 (740)
Q Consensus 331 -----------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~-----l~~ 390 (740)
+|..+ . ++++|++|++++|.+.+.++..+..+++|+.|++++|. +++ .+|..+... +++
T Consensus 228 ~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~ 306 (636)
T 4eco_A 228 ENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306 (636)
T ss_dssp SCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT
T ss_pred cccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC
Confidence 77664 4 89999999999999999999999999999999999998 988 799888762 389
Q ss_pred CcEEEccCCcCCCCCCc--cccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCC-CCEE
Q 044924 391 LISFNISMNALNGSIPS--SFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTN-LRWL 467 (740)
Q Consensus 391 L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L 467 (740)
|++|++++|.++ .+|. .+.++++|++|++++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|
T Consensus 307 L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 307 IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 999999999999 7888 89999999999999999998999 4457899999999999999 67888999999 9999
Q ss_pred EcccCcCcccCCccccCCC--CCCEEEccCCcCCCCCccccc-------CCCCCceecccCCcccCCCchhhhCCCCCcE
Q 044924 468 QLESNHFVGEIPQSLSKCS--SLEGLYLNNNSLSGKIPRWLG-------NLKGLKHIIMPENHLEGPIPMEFCQLYSLQL 538 (740)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 538 (740)
++++|.++ .+|..+..++ +|++|++++|.+.+..|..+. .+++|++|++++|.++...+..+..+++|++
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 99999999 7888877655 899999999999999998888 8889999999999999655566778999999
Q ss_pred EEcccCcCCCCCCcccccc--------CccEEecCCccccccccccccc--cCCcceEEEccCCcCCCCCCccccCcCCC
Q 044924 539 LDISDNNISGSLPSCFHLL--------SIEQVHLSKNMLRGQLKRGTFF--NCSSLVTLDLSYNRLNGSIPNWVDGLSQL 608 (740)
Q Consensus 539 L~l~~n~l~~~~~~~~~~~--------~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 608 (740)
|++++|.++...+..+... +|+.|++++|.++ .+|.. +. .+++|+.|+|++|++++ +|..+..+++|
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD-FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG-GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChh-hhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 9999999995555555532 9999999999999 78876 55 99999999999999997 89999999999
Q ss_pred cEEEc------CCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCCC
Q 044924 609 RHLIL------GHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSS 664 (740)
Q Consensus 609 ~~L~L------~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~ 664 (740)
++|+| ++|++.+.+|..++.+++|++|++++|++ +.+|..+. ..+.......+.
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCT
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCC
Confidence 99999 56788889999999999999999999999 68887654 233333333333
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-41 Score=376.07 Aligned_cols=491 Identities=21% Similarity=0.259 Sum_probs=314.7
Q ss_pred CCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEE
Q 044924 8 TNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSL 87 (740)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 87 (740)
+++++|+|++|.+++..+.+|.++++|++|++++|++. .+++..|+++++|++|++++|.++.. .+..|.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccc
Confidence 47999999999999888889999999999999999987 56666899999999999999999876 66889999999999
Q ss_pred EccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhhhcCCCc---
Q 044924 88 HLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIGELMPSL--- 164 (740)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L--- 164 (740)
++++|.++..... .++.+++|++|++.+|.......+ ..++++++|++|++++| ...+..+..+.. +++|
T Consensus 106 ~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~-l~~L~~~ 178 (570)
T 2z63_A 106 VAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSN--KIQSIYCTDLRV-LHQMPLL 178 (570)
T ss_dssp ECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECTTS--CCCEECGGGGHH-HHTCTTC
T ss_pred cccccccccCCCc--cccccccccEEecCCCccceecCh--hhhcccCCCCEEeCcCC--ccceecHHHccc-hhccchh
Confidence 9999998875442 367899999999999987653322 46889999999999999 444433444444 5666
Q ss_pred -eEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCcccc-CCChhhhcCCCCcEEEcCCCcccC-----CCCcccccC
Q 044924 165 -KYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRG-SLPWCLANMTSLRILDVSSNQLTG-----SISSSPLIH 237 (740)
Q Consensus 165 -~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~~~l~~ 237 (740)
+.+++++|. +..++.......+|+.|++++|.... .++..+..++.++.+++....+.. .++...+..
T Consensus 179 ~~~L~l~~n~-----l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 179 NLSLDLSLNP-----MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp CCEEECTTCC-----CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred hhhcccCCCC-----ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 899998862 22222333334489999999985432 235667788888877665432221 233333444
Q ss_pred cCC--ccEEEccCC-cccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccC
Q 044924 238 LTS--IEELRLSDN-HFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQ 314 (740)
Q Consensus 238 l~~--L~~L~l~~n-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 314 (740)
+++ ++.++++++ .+.+ .....+..+++|+.|++++|.+.. +|.++..+
T Consensus 254 l~~l~l~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~----------------------------l~~~~~~~ 304 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLD-DIIDLFNCLTNVSSFSLVSVTIER----------------------------VKDFSYNF 304 (570)
T ss_dssp GGGSEEEEEEEEETTEEES-CSTTTTGGGTTCSEEEEESCEECS----------------------------CCBCCSCC
T ss_pred ccccchhhhhhhcchhhhh-hchhhhcCcCcccEEEecCccchh----------------------------hhhhhccC
Confidence 443 456666666 3332 223445566666666666655431 23344444
Q ss_pred CCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcC--chhHhhhCCCCc
Q 044924 315 HDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHI--PVEIGDILPSLI 392 (740)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~ 392 (740)
+|+.|++++|.+. .+|. ..+++|+.|++.++.+.+..+. ..+++|+.|++++|.+++.. +..+.. +++|+
T Consensus 305 -~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~ 376 (570)
T 2z63_A 305 -GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLK 376 (570)
T ss_dssp -CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCC
T ss_pred -CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccc-cCccC
Confidence 6666666666655 4443 2556666666666665543332 45566666666666665322 333333 55666
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccC
Q 044924 393 SFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN 472 (740)
Q Consensus 393 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 472 (740)
+|++++|.+.+..+ .+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 377 ~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 377 YLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp EEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 66666666553332 25566666666666665554444333445566666666666665555555555666666666666
Q ss_pred cCc-ccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCC
Q 044924 473 HFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL 550 (740)
Q Consensus 473 ~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 550 (740)
.+. +.+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 554 345555555666666666666655555555555566666666666555555555555556666666655555433
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-42 Score=389.33 Aligned_cols=328 Identities=19% Similarity=0.252 Sum_probs=274.3
Q ss_pred cchhhc--cCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCC-CCC-CCCCCCCCC------CCccEEEcccCcC
Q 044924 307 FPKFLY--HQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDS-LAG-PFRLPIHSH------KQLRLLDVSNNNF 376 (740)
Q Consensus 307 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~ 376 (740)
+|..+. .+++|+.|++++|.+.+.+|..+ .++++|++|++++|. +++ .++..+..+ ++|+.|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 577777 88899999999998888888764 688899999999987 776 566655554 8899999999999
Q ss_pred CCcCch--hHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCC-CcEEeCCCCcccCc
Q 044924 377 QGHIPV--EIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVN-LEYLTLSNNNLEGH 453 (740)
Q Consensus 377 ~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~ 453 (740)
+ .+|. .+.. +++|++|++++|.++|.+| .+..+++|++|++++|.+. .+|..+. .+++ |++|++++|.++ .
T Consensus 318 ~-~ip~~~~l~~-l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 318 K-TFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp S-SCCCHHHHTT-CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-S
T ss_pred C-ccCchhhhcc-CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-c
Confidence 8 8887 5555 8899999999999988888 8888999999999999987 7887754 5788 999999999988 5
Q ss_pred CccccCCCC--CCCEEEcccCcCcccCCcccc-------CCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccC
Q 044924 454 MFTRNFNLT--NLRWLQLESNHFVGEIPQSLS-------KCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEG 524 (740)
Q Consensus 454 ~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 524 (740)
+|..+..+. +|+.|++++|.+.+..|..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 677776654 899999999999988888887 77899999999999985444456679999999999999984
Q ss_pred CCchhhhCCC-------CCcEEEcccCcCCCCCCccc--cccCccEEecCCccccccccccccccCCcceEEEc------
Q 044924 525 PIPMEFCQLY-------SLQLLDISDNNISGSLPSCF--HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDL------ 589 (740)
Q Consensus 525 ~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L------ 589 (740)
..+..+.... +|++|++++|+++...+..+ .+++|+.|++++|.+++ +|.. +.++++|++|+|
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-PLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCSSCCEEECCSCBCT
T ss_pred cCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChh-hhcCCCCCEEECCCCccc
Confidence 4333443333 89999999999995555555 68999999999999996 7776 889999999999
Q ss_pred cCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCC
Q 044924 590 SYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHI 646 (740)
Q Consensus 590 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 646 (740)
++|.+.+.+|..+.++++|++|+|++|++. .+|..+. ++|+.||+++|++.+.-
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 567888899999999999999999999995 8888876 89999999999998543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-40 Score=377.09 Aligned_cols=287 Identities=20% Similarity=0.259 Sum_probs=131.2
Q ss_pred CCCEEEecCCCCCCCCCC--CCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCC-CcE
Q 044924 341 RLETLSLVNDSLAGPFRL--PIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINS-LQI 417 (740)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 417 (740)
+|+.|++++|.+. .++. .+..+++|+.|++++|.++ .+| .+. .+++|+.|++++|.++ .+|..+..+++ |+.
T Consensus 549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCE
Confidence 4444444444444 3333 3444444444444444444 444 222 2444444444444444 44444444444 555
Q ss_pred EeccCcccccccchhhhhcC--CCCcEEeCCCCcccCcCcccc---C--CCCCCCEEEcccCcCcccCCcc-ccCCCCCC
Q 044924 418 LDLSNNQLIGEIPEHLAVGC--VNLEYLTLSNNNLEGHMFTRN---F--NLTNLRWLQLESNHFVGEIPQS-LSKCSSLE 489 (740)
Q Consensus 418 L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~ 489 (740)
|++++|.+. .+|..+. .. ++|++|++++|.+.+.++... . .+++|+.|++++|.+. .+|.. +..+++|+
T Consensus 624 L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 624 LGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPIS 700 (876)
T ss_dssp EECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCS
T ss_pred EECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCC
Confidence 555555444 4443221 12 224555555554444332111 1 2235555555555555 33332 23455555
Q ss_pred EEEccCCcCCCCCcccccC--------CCCCceecccCCcccCCCchhhh--CCCCCcEEEcccCcCCCCCCccccccCc
Q 044924 490 GLYLNNNSLSGKIPRWLGN--------LKGLKHIIMPENHLEGPIPMEFC--QLYSLQLLDISDNNISGSLPSCFHLLSI 559 (740)
Q Consensus 490 ~L~l~~n~~~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L 559 (740)
.|++++|.+. .+|..+.. +++|+.|++++|.++ .+|..+. .+++|+.|++++|++.+.+.....+++|
T Consensus 701 ~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L 778 (876)
T 4ecn_A 701 TIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778 (876)
T ss_dssp EEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTC
T ss_pred EEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCC
Confidence 5555555555 33332221 225666666666665 4555554 5666666666666655432222234444
Q ss_pred cEEecCC------ccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCC
Q 044924 560 EQVHLSK------NMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQ 633 (740)
Q Consensus 560 ~~L~L~~------n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 633 (740)
+.|+|++ |.+.+.+|.. +.++++|+.|+|++|.+ +.+|..+. ++|++|+|++|++....+..++....+.
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~ 854 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAG 854 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTT
T ss_pred CEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccch
Confidence 4444443 4444444443 44555555555555555 24444433 3555555555555434444443333333
Q ss_pred EEeCCCCc
Q 044924 634 LLDLSNNN 641 (740)
Q Consensus 634 ~L~l~~n~ 641 (740)
.+.+.+|+
T Consensus 855 ~~~L~~n~ 862 (876)
T 4ecn_A 855 MYVLLYDK 862 (876)
T ss_dssp CCEEECCT
T ss_pred heeecCCC
Confidence 44444443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.1e-40 Score=365.77 Aligned_cols=468 Identities=21% Similarity=0.210 Sum_probs=253.1
Q ss_pred CCCCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcE
Q 044924 7 LTNLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKS 86 (740)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 86 (740)
+...+++|+++++++. +|..+. ++|++|++++|.+.+ +++..|+++++|++|++++|.++.. .+..|.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCE
Confidence 4445778888887774 454443 678888888888763 5555788888888888888877765 5677778888888
Q ss_pred EEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcch-hhhHHhhhcCCCce
Q 044924 87 LHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNT-SFLQIIGELMPSLK 165 (740)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~ 165 (740)
|++++|.++.... . .+++|++|++++|.+ .+ .++
T Consensus 105 L~Ls~N~l~~lp~-------------------------------~-~l~~L~~L~Ls~N~l--~~l~~p----------- 139 (562)
T 3a79_B 105 LDVSHNRLQNISC-------------------------------C-PMASLRHLDLSFNDF--DVLPVC----------- 139 (562)
T ss_dssp EECTTSCCCEECS-------------------------------C-CCTTCSEEECCSSCC--SBCCCC-----------
T ss_pred EECCCCcCCccCc-------------------------------c-ccccCCEEECCCCCc--cccCch-----------
Confidence 8888877653211 1 466777777777632 11 111
Q ss_pred EEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCC--cEEEcCCCcc--cCCCCcccccCcC-C
Q 044924 166 YLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSL--RILDVSSNQL--TGSISSSPLIHLT-S 240 (740)
Q Consensus 166 ~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~l~~l~-~ 240 (740)
..+..+++|++|++++|.+++. .+..+++| +.|++++|.+ .+..|. .+..+. .
T Consensus 140 ------------------~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~ 197 (562)
T 3a79_B 140 ------------------KEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTT 197 (562)
T ss_dssp ------------------GGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEE
T ss_pred ------------------HhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcc-cccccCcc
Confidence 2333444444444444444432 12222333 5555555544 333332 333322 0
Q ss_pred ccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEE
Q 044924 241 IEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNV 320 (740)
Q Consensus 241 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L 320 (740)
.-.+++++|.+.+......+..+++|+.+++++|..... .
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------------~-------------- 237 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ--------------------------R-------------- 237 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH--------------------------H--------------
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccc--------------------------h--------------
Confidence 112334444443322222223333333333333211000 0
Q ss_pred EccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCc
Q 044924 321 DLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 400 (740)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 400 (740)
+.+ ... .+..++.++.+++.++ +++++.+. .++.... .++|++|++++|.
T Consensus 238 ------l~~-~~~-~l~~l~~L~~L~L~~~-------------------~l~~~~~~-~~~~~~~--~~~L~~L~l~~n~ 287 (562)
T 3a79_B 238 ------LMT-FLS-ELTRGPTLLNVTLQHI-------------------ETTWKCSV-KLFQFFW--PRPVEYLNIYNLT 287 (562)
T ss_dssp ------HHH-HHH-HHHSCSSCEEEEEEEE-------------------EECHHHHH-HHHHHHT--TSSEEEEEEEEEE
T ss_pred ------HHH-HHH-HHhccCcceEEEecCC-------------------cCcHHHHH-HHHHhhh--cccccEEEEeccE
Confidence 000 000 1233444444443322 22222222 1222222 2467777777777
Q ss_pred CCCCCCccc-----cCCCCCcEEeccCcccccccchhhhhc---CCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccC
Q 044924 401 LNGSIPSSF-----GNINSLQILDLSNNQLIGEIPEHLAVG---CVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN 472 (740)
Q Consensus 401 l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 472 (740)
+++.+|..+ ..++.|+.+++..+.+ .+|...... ..+|++|++++|.+..... ...+++|++|++++|
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQN 363 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSS
T ss_pred eeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCC
Confidence 776666655 5666666666666655 455322211 2557777777766543211 134455555555555
Q ss_pred cCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCC-
Q 044924 473 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLP- 551 (740)
Q Consensus 473 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 551 (740)
.+++..|..+..+++|++|++++|.+.+.. .+|..+.++++|++|++++|.+.+.+|
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFF----------------------KVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTT----------------------HHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcc----------------------cchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 555444455555555555555555544311 112334445555555555555544222
Q ss_pred cccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCcc-ccCC
Q 044924 552 SCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQ-LCGL 629 (740)
Q Consensus 552 ~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l 629 (740)
..+. +++|+.|++++|.+++.++.. +. ++|++|+|++|+++ .+|..+.++++|++|+|++|+++ .+|.. +..+
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 496 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred hhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence 2222 455555555555555444433 22 68999999999998 66766779999999999999999 56665 9999
Q ss_pred CCCCEEeCCCCccccCCC
Q 044924 630 NQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 630 ~~L~~L~l~~n~~~~~~p 647 (740)
++|+.|++++|++.|.+|
T Consensus 497 ~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCCCEECCSCCBCCCHH
T ss_pred CCCCEEEecCCCcCCCcc
Confidence 999999999999985443
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=361.46 Aligned_cols=419 Identities=20% Similarity=0.199 Sum_probs=322.7
Q ss_pred CCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCcccee
Q 044924 190 MHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIF 269 (740)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 269 (740)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..|. .++++++|++|++++|.++. ++.. .+++|+.|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLVK-ISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCCE-EECC---CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCceee-cCcc---ccCCccEE
Confidence 6777777777777766566777777777777777777643333 67777777777777777662 2222 56777777
Q ss_pred eccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCC--CEEEe
Q 044924 270 DAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRL--ETLSL 347 (740)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l 347 (740)
++++|.+... .+|..++.+++|+.|++++|.+.+. .+..+++| +.|++
T Consensus 96 ~L~~N~l~~~--------------------------~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 96 DLSFNAFDAL--------------------------PICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLL 145 (520)
T ss_dssp ECCSSCCSSC--------------------------CCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEE
T ss_pred eccCCccccc--------------------------cchhhhccCCcceEEEecCcccchh----hccccccceeeEEEe
Confidence 7777665321 2356677788888888888877642 23566777 88888
Q ss_pred cCCCC--CCCCCCCCCCCC-CccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCc-------CCCCCCccccCCCCCcE
Q 044924 348 VNDSL--AGPFRLPIHSHK-QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNA-------LNGSIPSSFGNINSLQI 417 (740)
Q Consensus 348 ~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~ 417 (740)
++|.+ .+..+..+..+. ....+++++|.+.+.++...+..+++|+.+++++|. +.+.++ .+..+++|+.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~ 224 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSN 224 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhh
Confidence 88887 566666666555 334567788888877777666668889999999886 555555 6788999999
Q ss_pred EeccCcccccccchhhhh--cCCCCcEEeCCCCcccCcCcccc-----CCCCCCCEEEcccCcCcccCC-ccccCC---C
Q 044924 418 LDLSNNQLIGEIPEHLAV--GCVNLEYLTLSNNNLEGHMFTRN-----FNLTNLRWLQLESNHFVGEIP-QSLSKC---S 486 (740)
Q Consensus 418 L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~ 486 (740)
|++++|.+.+..+..... ..++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence 999998877544333221 25689999999999998888888 8899999999999998 445 444443 6
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCC--CCCccc-cccCccEEe
Q 044924 487 SLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISG--SLPSCF-HLLSIEQVH 563 (740)
Q Consensus 487 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~-~~~~L~~L~ 563 (740)
+|+.|++++|.+.... .+..+++|++|++++|.+++..|..+.++++|++|++++|++.+ .+|..+ .+++|+.|+
T Consensus 303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 7999999999886432 13688999999999999998889999999999999999999986 334444 489999999
Q ss_pred cCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 044924 564 LSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 564 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 643 (740)
+++|.+.+.+|...+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++.
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 9999999778877789999999999999999988877665 79999999999999 88988889999999999999999
Q ss_pred cCCCCC-CCc
Q 044924 644 GHIPPC-FDN 652 (740)
Q Consensus 644 ~~~p~~-~~~ 652 (740)
.+|.. +..
T Consensus 458 -~l~~~~~~~ 466 (520)
T 2z7x_B 458 -SVPDGIFDR 466 (520)
T ss_dssp -CCCTTTTTT
T ss_pred -ccCHHHhcc
Confidence 45553 544
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.4e-39 Score=366.03 Aligned_cols=348 Identities=17% Similarity=0.179 Sum_probs=296.6
Q ss_pred cchhhccCCCccEEEccCccccC-----------------CcchHH-hhcCCCCCEEEecCCCCCCCCCCCCCCCCCccE
Q 044924 307 FPKFLYHQHDLVNVDLSHIKMNG-----------------GFPNWL-LENNTRLETLSLVNDSLAGPFRLPIHSHKQLRL 368 (740)
Q Consensus 307 ~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 368 (740)
+|..+..+++|+.|++++|.+.+ .+|..+ |.++++|+.|++++|.+.+.++..+..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78999999999999999999988 277765 458999999999999999999999999999999
Q ss_pred EEcccCc-CCC-cCchhHhhh------CCCCcEEEccCCcCCCCCCc--cccCCCCCcEEeccCcccccccchhhhhcCC
Q 044924 369 LDVSNNN-FQG-HIPVEIGDI------LPSLISFNISMNALNGSIPS--SFGNINSLQILDLSNNQLIGEIPEHLAVGCV 438 (740)
Q Consensus 369 L~l~~~~-~~~-~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 438 (740)
|++++|. +++ .+|..+... +++|++|++++|.++ .+|. .+.++++|+.|++++|.+. .+| .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence 9999998 887 788876652 359999999999999 7888 8999999999999999988 888 445799
Q ss_pred CCcEEeCCCCcccCcCccccCCCCC-CCEEEcccCcCcccCCccccCCCC--CCEEEccCCcCCCCCcccc---c--CCC
Q 044924 439 NLEYLTLSNNNLEGHMFTRNFNLTN-LRWLQLESNHFVGEIPQSLSKCSS--LEGLYLNNNSLSGKIPRWL---G--NLK 510 (740)
Q Consensus 439 ~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~~---~--~l~ 510 (740)
+|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... . .++
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 9999999999999 68888999999 999999999998 78888877654 9999999999987665432 2 345
Q ss_pred CCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccc--------cCccEEecCCccccccccccccc--c
Q 044924 511 GLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHL--------LSIEQVHLSKNMLRGQLKRGTFF--N 580 (740)
Q Consensus 511 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------~~L~~L~L~~n~~~~~~~~~~~~--~ 580 (740)
+|+.|++++|.++...+..+..+++|+.|++++|++....+..+.. ++|+.|+|++|.++ .+|.. +. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~-l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD-FRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG-GSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH-hhhcc
Confidence 8999999999999544445568999999999999999555555543 28999999999999 77776 55 8
Q ss_pred CCcceEEEccCCcCCCCCCccccCcCCCcEEEcCC------CcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCccc
Q 044924 581 CSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGH------NNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTT 654 (740)
Q Consensus 581 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 654 (740)
+++|+.|+|++|.+++ +|..+..+++|++|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+.. .
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~-~ 828 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTP-Q 828 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCS-S
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcC-C
Confidence 9999999999999997 788899999999999977 788889999999999999999999999 788876542 3
Q ss_pred ccccccCCCCC
Q 044924 655 LHESYSNSSSL 665 (740)
Q Consensus 655 ~~~~~~~~~~~ 665 (740)
+.......+.+
T Consensus 829 L~~LdLs~N~l 839 (876)
T 4ecn_A 829 LYILDIADNPN 839 (876)
T ss_dssp SCEEECCSCTT
T ss_pred CCEEECCCCCC
Confidence 33333344443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-36 Score=344.48 Aligned_cols=494 Identities=19% Similarity=0.221 Sum_probs=262.0
Q ss_pred CCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCCCccCCCcCCccccCCCCCcEEE
Q 044924 9 NLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLH 88 (740)
Q Consensus 9 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 88 (740)
++++|||++|.+++..+.+|.++++|++|+|++|++. .+++++|+++++|++|+|++|.++.. .+.+|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEE
Confidence 7999999999999888889999999999999999998 57777899999999999999999876 557899999999999
Q ss_pred ccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHhh---hcCCCce
Q 044924 89 LSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQIIG---ELMPSLK 165 (740)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~L~ 165 (740)
+++|+++.... ..++.+++|++|++.+|.......+ ..+..+++|++|++++|. +.+..+..+. +......
T Consensus 131 Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 131 AVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp CTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCC
T ss_pred CCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCc--hhhccchhhhhhcccCcc--ccccccccccchhhhhhhhh
Confidence 99999987443 2345777888888877766543332 346677777778777773 3322222221 1111233
Q ss_pred EEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccC-CChhhhcCCCCcEEEcCCCcccC-----CCCcccccCcC
Q 044924 166 YLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGS-LPWCLANMTSLRILDVSSNQLTG-----SISSSPLIHLT 239 (740)
Q Consensus 166 ~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~n~l~~-----~~~~~~l~~l~ 239 (740)
.++++.+ .+..++........++.+++.++..... .+..+..+..++..++..+.... ......+..+.
T Consensus 205 ~~~ls~n-----~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 205 SLDLSLN-----PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp EEECTTC-----CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhcccC-----cccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 4445442 2222223333444455555555533321 12334455555544443221110 01111222222
Q ss_pred CccEEEccCCcccc--cCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCc
Q 044924 240 SIEELRLSDNHFRI--PISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDL 317 (740)
Q Consensus 240 ~L~~L~l~~n~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L 317 (740)
.+....+..+.... ......+..+.+++.+.+..+.+.. ...+....++
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----------------------------~~~~~~~~~L 330 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-----------------------------VKDFSYNFGW 330 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-----------------------------CGGGGSCCCC
T ss_pred chhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-----------------------------ccccccchhh
Confidence 33333222221110 0000111222222222222222111 0112233455
Q ss_pred cEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCC--cCchhHhhhCCCCcEEE
Q 044924 318 VNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQG--HIPVEIGDILPSLISFN 395 (740)
Q Consensus 318 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~ 395 (740)
+.+++.++.+....+ ..+..++.+.+..+..... .....+++|+.+++++|.+.. ..+..... +.++++++
T Consensus 331 ~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~ 403 (635)
T 4g8a_A 331 QHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLD 403 (635)
T ss_dssp SEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHS-CSCCCEEE
T ss_pred hhhhcccccccCcCc----ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhh-hhhhhhhh
Confidence 555555555442222 1344555555555544332 122345555555555555432 12222222 34555555
Q ss_pred ccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCc
Q 044924 396 ISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFV 475 (740)
Q Consensus 396 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 475 (740)
+..+.... .+..+..+++|+.+++.+++.....+...+..+.+++.++++.|.+.+..+..+..++.++.|++++|...
T Consensus 404 ~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 404 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp CCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred cccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 55555442 23344455555555555555444444444444555555555555555555555555555555555555432
Q ss_pred -ccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCc
Q 044924 476 -GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPS 552 (740)
Q Consensus 476 -~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 552 (740)
+..|..|..+++|++|++++|++.+..|..|.++++|++|++++|++++..+..|.++++|++|++++|++++..|.
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 23444555555555555555555544455555555555555555555555555555555555555555555544433
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-36 Score=327.29 Aligned_cols=372 Identities=18% Similarity=0.195 Sum_probs=236.4
Q ss_pred CCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCcccee
Q 044924 190 MHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIF 269 (740)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 269 (740)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...++.+++|++|++++|.+.+ .....+.++++|+.|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEE
Confidence 5788888888888776677788888888888888877766666677788888888888887763 233445555666666
Q ss_pred eccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecC
Q 044924 270 DAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVN 349 (740)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 349 (740)
++++|.+.+... .+..+..+++|++|++++|.+.+..|..++..+++|++|++++
T Consensus 109 ~L~~n~l~~~~~-------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 109 TLTQCNLDGAVL-------------------------SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp ECTTSCCBTHHH-------------------------HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred eCCCCCCCcccc-------------------------CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 665555432110 0011333445555555555554444444334444444444444
Q ss_pred CCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCcc--------ccCCCCCcEEecc
Q 044924 350 DSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSS--------FGNINSLQILDLS 421 (740)
Q Consensus 350 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~ 421 (740)
|.+.+..+..+..+ ...+++.|++++|.+.+..+.. +..+++|++|+++
T Consensus 164 n~l~~~~~~~l~~l-----------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 164 NKVKSICEEDLLNF-----------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCBSCCCTTTSGGG-----------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred CcccccChhhhhcc-----------------------ccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 44443333332222 0134555555555554332222 2355678888888
Q ss_pred Ccccccccchhhhhc--CCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCcccc--CCCCCCEEEccCCc
Q 044924 422 NNQLIGEIPEHLAVG--CVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLS--KCSSLEGLYLNNNS 497 (740)
Q Consensus 422 ~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~ 497 (740)
+|.+.+..|..+... .++|+.|++++|...+.... .+.+....+..+. ..++|++|++++|.
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCcc
Confidence 887776666655432 26677777777765432110 1111111111121 22466777777776
Q ss_pred CCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccc
Q 044924 498 LSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGT 577 (740)
Q Consensus 498 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 577 (740)
+.+..|..+..+++|++|++++|.+++..|..|.++++|++|++++|.+. .++...
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~ 342 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG------------------------SIDSRM 342 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------------------EECGGG
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC------------------------CcChhH
Confidence 66666666666666666666666666666666666666666666666554 333334
Q ss_pred cccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCC
Q 044924 578 FFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPP 648 (740)
Q Consensus 578 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~ 648 (740)
|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++.+.+|.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 88899999999999999988899999999999999999999977777789999999999999999977764
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-36 Score=336.82 Aligned_cols=439 Identities=18% Similarity=0.163 Sum_probs=310.0
Q ss_pred CCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCcccee
Q 044924 190 MHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIF 269 (740)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 269 (740)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..|. .++.+++|++|++++|.++ .++.. .+++|+.|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 5666666666666655556666666666666666666633333 5666666666666666665 22222 56666666
Q ss_pred eccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCC--CEEEe
Q 044924 270 DAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRL--ETLSL 347 (740)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l 347 (740)
++++|.+... ..|..+..+++|+.|++++|.+.+.. +..+++| ++|++
T Consensus 127 ~Ls~N~l~~l--------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L 176 (562)
T 3a79_B 127 DLSFNDFDVL--------------------------PVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILL 176 (562)
T ss_dssp ECCSSCCSBC--------------------------CCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEE
T ss_pred ECCCCCcccc--------------------------CchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEe
Confidence 6666655321 12455666777777777777765421 2344555 78888
Q ss_pred cCCCC--CCCCCCCCCCCC-CccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCC----CCCCccccCCCCCcEEec
Q 044924 348 VNDSL--AGPFRLPIHSHK-QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALN----GSIPSSFGNINSLQILDL 420 (740)
Q Consensus 348 ~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l 420 (740)
++|.+ .+..+..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|... ......+..++.|+.+++
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 87777 555555554443 12245777788777676666655778888888887421 112235677888888888
Q ss_pred cCccccccc----chhhhhcCCCCcEEeCCCCcccCcCcccc-----CCCCCCCEEEcccCcCcccCC-cccc---CCCC
Q 044924 421 SNNQLIGEI----PEHLAVGCVNLEYLTLSNNNLEGHMFTRN-----FNLTNLRWLQLESNHFVGEIP-QSLS---KCSS 487 (740)
Q Consensus 421 ~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~l~~ 487 (740)
+++.+.+.. +... ..++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+
T Consensus 257 ~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC
T ss_pred cCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc
Confidence 887665422 2222 24689999999999998888776 5666666666666665 334 2222 2257
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCC--Cccc-cccCccEEec
Q 044924 488 LEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL--PSCF-HLLSIEQVHL 564 (740)
Q Consensus 488 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~-~~~~L~~L~L 564 (740)
|++|++++|.+.... ....+++|++|++++|.+++..|..+.++++|++|++++|++.+.. |..+ .+++|+.|++
T Consensus 333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 333 IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 999999999886332 1268899999999999999889999999999999999999999744 3334 4899999999
Q ss_pred CCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 044924 565 SKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 644 (740)
Q Consensus 565 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 644 (740)
++|.+.+.+|...+..+++|++|+|++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~- 486 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK- 486 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-
Confidence 999999878887799999999999999999887776654 79999999999999 78888889999999999999999
Q ss_pred CCCCC-CCcccc-------cccccCCCCCccccc-ccc
Q 044924 645 HIPPC-FDNTTL-------HESYSNSSSLKPFET-SLV 673 (740)
Q Consensus 645 ~~p~~-~~~~~~-------~~~~~~~~~~~~~~~-~~~ 673 (740)
.+|.. +..... .+.+.|+|...+|.. |..
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~ 524 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 524 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHH
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHH
Confidence 56654 554431 344567777766633 543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-35 Score=322.43 Aligned_cols=366 Identities=20% Similarity=0.207 Sum_probs=255.9
Q ss_pred CCCceEEeccCCCCCCCcccch-hhhhcCCCCCcEEeccCCccccCC-ChhhhcCCCCcEEEcCCCcccCCCCcccccCc
Q 044924 161 MPSLKYLSLSYSTPGTNSIEIL-DQGLCSLMHMQELHIAHNDLRGSL-PWCLANMTSLRILDVSSNQLTGSISSSPLIHL 238 (740)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~l~~l-~~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 238 (740)
.++|++|++++|. +..+ +..+..+++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|. .++++
T Consensus 29 ~~~l~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l 102 (455)
T 3v47_A 29 PAHVNYVDLSLNS-----IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGL 102 (455)
T ss_dssp CTTCCEEECCSSC-----CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTC
T ss_pred CCccCEEEecCCc-----cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCc
Confidence 4689999999862 2222 367899999999999999987555 57799999999999999999855555 89999
Q ss_pred CCccEEEccCCcccccC-CccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcch-hhccCCC
Q 044924 239 TSIEELRLSDNHFRIPI-SLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPK-FLYHQHD 316 (740)
Q Consensus 239 ~~L~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~~~~ 316 (740)
++|++|++++|.+.+.. ....+.++++|+.|++++|.+... .|. .+..+++
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------------~~~~~~~~l~~ 155 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI---------------------------QPASFFLNMRR 155 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC---------------------------CCCGGGGGCTT
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc---------------------------CcccccCCCCc
Confidence 99999999999988532 234478899999999999987542 133 3678899
Q ss_pred ccEEEccCccccCCcchHHhhcC--CCCCEEEecCCCCCCCCCCC--------CCCCCCccEEEcccCcCCCcCchhHhh
Q 044924 317 LVNVDLSHIKMNGGFPNWLLENN--TRLETLSLVNDSLAGPFRLP--------IHSHKQLRLLDVSNNNFQGHIPVEIGD 386 (740)
Q Consensus 317 L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~ 386 (740)
|+.|++++|.+.+..+..+ ..+ ..++.++++++.+.+..+.. +..+++|+.|++++|.+++.+|..+..
T Consensus 156 L~~L~L~~n~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp CCEEECTTCCBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhh-hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 9999999999987766654 333 68899999999887755443 235577888888888877666666554
Q ss_pred hC--CCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccC--CCC
Q 044924 387 IL--PSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNF--NLT 462 (740)
Q Consensus 387 ~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~ 462 (740)
.. ++++.|++++|...+... ..+.+. ......+. ..+
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~-------------------------~~~~~~~~~~~~~ 275 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSF--------------GHTNFK-------------------------DPDNFTFKGLEAS 275 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCT--------------TCCSSC-------------------------CCCTTTTGGGTTS
T ss_pred cccccceeeEeecccccccccc--------------chhhhc-------------------------cCccccccccccc
Confidence 32 456666666665442210 000011 00001111 134
Q ss_pred CCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcc
Q 044924 463 NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDIS 542 (740)
Q Consensus 463 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 542 (740)
+|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 56666666666665566666666677777777777666666667777777777777777776667777777777777777
Q ss_pred cCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccC
Q 044924 543 DNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEV 622 (740)
Q Consensus 543 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 622 (740)
+|++.+.. +..|.++++|++|+|++|++++..+..+..+++|++|++++|++++..
T Consensus 356 ~N~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 356 YNHIRALG------------------------DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp SSCCCEEC------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCcccccC------------------------hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 77765322 222666777777777777777666666777777777777777777554
Q ss_pred C
Q 044924 623 P 623 (740)
Q Consensus 623 p 623 (740)
|
T Consensus 412 ~ 412 (455)
T 3v47_A 412 P 412 (455)
T ss_dssp T
T ss_pred C
Confidence 4
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=321.47 Aligned_cols=355 Identities=18% Similarity=0.133 Sum_probs=269.6
Q ss_pred cEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEcc
Q 044924 318 VNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNIS 397 (740)
Q Consensus 318 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 397 (740)
+.++.++..+. .+|..+ .+.++.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+.. +++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECC
Confidence 45555555544 345432 356788888888887777777888888888888888887544554444 7788888888
Q ss_pred CCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCccc
Q 044924 398 MNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGE 477 (740)
Q Consensus 398 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 477 (740)
+|.+++..+..|.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 888886666667888888888888888774434 3445688888888888888887777888888888888888888765
Q ss_pred CCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-c
Q 044924 478 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-L 556 (740)
Q Consensus 478 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~ 556 (740)
.+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|++|++++|.++...+..+. +
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 556678888888888888888877777788888888888888877766666666666888888888888865544444 7
Q ss_pred cCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEe
Q 044924 557 LSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLD 636 (740)
Q Consensus 557 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 636 (740)
++|+.|++++|.+.+ ++...|.++++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|+.|+
T Consensus 248 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 248 VYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp TTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred cccCeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 888888888888874 4445589999999999999999988899999999999999999999977777889999999999
Q ss_pred CCCCccccCCCCCCCcccccccccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 637 LSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 637 l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
+++|++.+ +|.+.++..+... .......+.|.+|..+.|..+.
T Consensus 327 l~~N~l~c-----------------~c~~~~~~~~~~~----~~~~~~~~~C~~p~~~~g~~l~ 369 (477)
T 2id5_A 327 LDSNPLAC-----------------DCRLLWVFRRRWR----LNFNRQQPTCATPEFVQGKEFK 369 (477)
T ss_dssp CCSSCEEC-----------------SGGGHHHHTTTTS----SCCTTCCCBEEESGGGTTCBGG
T ss_pred ccCCCccC-----------------ccchHhHHhhhhc----cccCccCceeCCchHHcCCchh
Confidence 99999984 3333333222111 1122345688899888888765
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.2e-35 Score=315.21 Aligned_cols=297 Identities=25% Similarity=0.344 Sum_probs=177.9
Q ss_pred CCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEE
Q 044924 315 HDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISF 394 (740)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 394 (740)
++|+.|++++|.+.+ ++. ..++|++|++++|.+.+ ++ .+..+++|+.|++++|.++ .+|.. .++|++|
T Consensus 111 ~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence 456666666666553 222 11567777777777665 33 4677777777777777776 35543 3477777
Q ss_pred EccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcC
Q 044924 395 NISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF 474 (740)
Q Consensus 395 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 474 (740)
++++|.+++ +| .+.++++|++|++++|.+.+ +|.. .++|++|++++|.+.. +| .+..+++|++|++++|.+
T Consensus 179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcC
Confidence 777777775 45 47777778888887777663 4432 3577788888777773 44 367777788888887777
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccc
Q 044924 475 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF 554 (740)
Q Consensus 475 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 554 (740)
++ +|.. +++|++|++++|.+.+ +|.. +++|+.|++++|.+++. |. -.++|++|++++|++.+.. .
T Consensus 250 ~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~-~-- 314 (454)
T 1jl5_A 250 KT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLC-D-- 314 (454)
T ss_dssp SS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEEC-C--
T ss_pred Cc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCccc-C--
Confidence 63 4432 3577888888887764 4432 36778888888877652 21 1257778888888776421 1
Q ss_pred cccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcc--cCCccccCC---
Q 044924 555 HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG--EVPVQLCGL--- 629 (740)
Q Consensus 555 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l--- 629 (740)
...+|+.|++++|.+++ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 315 ~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n 385 (454)
T 1jl5_A 315 LPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMN 385 (454)
T ss_dssp CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred CcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhc
Confidence 12477888888887774 4442 467888888888877 3554 35778888888888876 567777666
Q ss_pred ----------CCCCEEeCCCCcccc--CCCCCCCccccc
Q 044924 630 ----------NQLQLLDLSNNNLHG--HIPPCFDNTTLH 656 (740)
Q Consensus 630 ----------~~L~~L~l~~n~~~~--~~p~~~~~~~~~ 656 (740)
++|++||+++|++++ .+|..+..+.+.
T Consensus 386 ~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~ 424 (454)
T 1jl5_A 386 SHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMN 424 (454)
T ss_dssp C--------------------------------------
T ss_pred ccccccccccCcCCEEECCCCcCCccccchhhHhheeCc
Confidence 889999999999997 788777665543
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.4e-33 Score=301.39 Aligned_cols=346 Identities=23% Similarity=0.316 Sum_probs=208.7
Q ss_pred CCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCCccce
Q 044924 189 LMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQI 268 (740)
Q Consensus 189 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 268 (740)
++++++|++.++.+.. ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+.+.
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~-------------- 105 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADI-------------- 105 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC--------------
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccC--------------
Confidence 4567777777776653 33 35666677777777776653 332 56666666666666654421
Q ss_pred eeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEec
Q 044924 269 FDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLV 348 (740)
Q Consensus 269 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 348 (740)
+. +..+++|+.|++++|.+.+. +. +..+++|++|+++
T Consensus 106 ---------------------------------------~~-~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 106 ---------------------------------------TP-LANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELS 142 (466)
T ss_dssp ---------------------------------------GG-GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEE
T ss_pred ---------------------------------------hh-hcCCCCCCEEECCCCCCCCC-hH--HcCCCCCCEEECC
Confidence 11 34456666666666665532 22 3455555555555
Q ss_pred CCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccc
Q 044924 349 NDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE 428 (740)
Q Consensus 349 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 428 (740)
+|.+.+.. .+..+ ++|++|+++ +.+.+.. .+.++++|++|++++|.+. .
T Consensus 143 ~n~l~~~~--~~~~l-------------------------~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~-~ 191 (466)
T 1o6v_A 143 SNTISDIS--ALSGL-------------------------TSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS-D 191 (466)
T ss_dssp EEEECCCG--GGTTC-------------------------TTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC-C
T ss_pred CCccCCCh--hhccC-------------------------CcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC-C
Confidence 55544321 23444 445555553 2222111 2455555555555555544 2
Q ss_pred cchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccC
Q 044924 429 IPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 508 (740)
Q Consensus 429 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 508 (740)
++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ +..
T Consensus 192 ~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 ISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred Chh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 222 2345566666666665554433 44556666666666665532 245566666666666666664433 666
Q ss_pred CCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEE
Q 044924 509 LKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLD 588 (740)
Q Consensus 509 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 588 (740)
+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+ ...+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCCEeE
Confidence 6677777777776664333 6666777777777776665433 3346677777777777665433 56778888888
Q ss_pred ccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccC
Q 044924 589 LSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGH 645 (740)
Q Consensus 589 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 645 (740)
+++|.+++. ..+.++++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 888888754 467888888888888888886666 77888888888888888863
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-33 Score=302.70 Aligned_cols=282 Identities=22% Similarity=0.289 Sum_probs=126.2
Q ss_pred hccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCC
Q 044924 311 LYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPS 390 (740)
Q Consensus 311 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 390 (740)
+..+++|+.|++++|.+.+ +|.. .++|++|++++|.+.+. + .+..+++|+.|++++|.++ .+|.. .++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~ 216 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLK-KLPDL----PLS 216 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCCC----CTT
T ss_pred cCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCC-cCCCC----cCc
Confidence 4556666666666666553 4432 24666666666666652 2 4566666666666666665 24432 235
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcc
Q 044924 391 LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLE 470 (740)
Q Consensus 391 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 470 (740)
|++|++++|.++ .+| .+..+++|++|++++|++. .+|. ..++|++|++++|.+++ ++.. +++|+.|+++
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 666666666665 444 2566666666666666655 3443 13566666666666654 2221 3566666666
Q ss_pred cCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCC-CCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCC
Q 044924 471 SNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL-KGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGS 549 (740)
Q Consensus 471 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 549 (740)
+|.+++ ++.. .++|++|++++|.+.+ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|+++.
T Consensus 286 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~- 351 (454)
T 1jl5_A 286 ENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE- 351 (454)
T ss_dssp SSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred CCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-
Confidence 666653 1111 1456666666666553 11 22 356666666666654 3322 3556666666666653
Q ss_pred CCccccccCccEEecCCccccc--cccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcc--cCCcc
Q 044924 550 LPSCFHLLSIEQVHLSKNMLRG--QLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG--EVPVQ 625 (740)
Q Consensus 550 ~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~ 625 (740)
+|. .+.+|+.|++++|.+++ .+|.. +. . |+.|.+.+.+|.. +++|++|++++|++++ .+|
T Consensus 352 lp~--~l~~L~~L~L~~N~l~~l~~ip~~-l~------~--L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP-- 415 (454)
T 1jl5_A 352 VPE--LPQNLKQLHVEYNPLREFPDIPES-VE------D--LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP-- 415 (454)
T ss_dssp CCC--CCTTCCEEECCSSCCSSCCCCCTT-CC------E--EECCC----------------------------------
T ss_pred ccc--hhhhccEEECCCCCCCcCCCChHH-HH------h--hhhcccccccccc---cCcCCEEECCCCcCCccccch--
Confidence 232 34556666666666554 33332 21 1 2234444444442 3899999999999986 455
Q ss_pred ccCCCCCCEEeCCCCccccCCCCC
Q 044924 626 LCGLNQLQLLDLSNNNLHGHIPPC 649 (740)
Q Consensus 626 ~~~l~~L~~L~l~~n~~~~~~p~~ 649 (740)
++++.|++.+|.+.+..|..
T Consensus 416 ----~sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 416 ----ESVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ------------------------
T ss_pred ----hhHhheeCcCcccCCccccC
Confidence 35677888999888766543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-32 Score=299.16 Aligned_cols=345 Identities=26% Similarity=0.353 Sum_probs=226.2
Q ss_pred CCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCC
Q 044924 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTS 240 (740)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 240 (740)
+++++.|++.++. +..++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++. ++++++
T Consensus 45 l~~l~~L~l~~~~-----i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLG-----IKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSC-----CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTT
T ss_pred hccccEEecCCCC-----CccCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCC
Confidence 5689999998862 22232 47789999999999999986543 9999999999999999984 443 889999
Q ss_pred ccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEE
Q 044924 241 IEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNV 320 (740)
Q Consensus 241 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L 320 (740)
|++|++++|.+.+. +. +..+++|+.|
T Consensus 114 L~~L~L~~n~l~~~-----------------------------------------------------~~-~~~l~~L~~L 139 (466)
T 1o6v_A 114 LTGLTLFNNQITDI-----------------------------------------------------DP-LKNLTNLNRL 139 (466)
T ss_dssp CCEEECCSSCCCCC-----------------------------------------------------GG-GTTCTTCSEE
T ss_pred CCEEECCCCCCCCC-----------------------------------------------------hH-HcCCCCCCEE
Confidence 99999999976631 11 4567899999
Q ss_pred EccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCc
Q 044924 321 DLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 400 (740)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 400 (740)
++++|.+.+ ++. +..+++|++|++.+ .+.+. ..+..+++|+.|++++|.+. .++. + ..+++|++|++++|.
T Consensus 140 ~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 140 ELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS-DISV-L-AKLTNLESLIATNNQ 210 (466)
T ss_dssp EEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCSEEECCSSC
T ss_pred ECCCCccCC-Chh--hccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC-CChh-h-ccCCCCCEEEecCCc
Confidence 999998875 443 57899999999964 33332 23677778888888887776 3332 2 235667777777776
Q ss_pred CCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCc
Q 044924 401 LNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQ 480 (740)
Q Consensus 401 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 480 (740)
+.+..| +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 211 l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~----- 278 (466)
T 1o6v_A 211 ISDITP--LGILTNLDELSLNGNQLKD-IGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS----- 278 (466)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-----
T ss_pred cccccc--ccccCCCCEEECCCCCccc-chh--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-----
Confidence 664433 4556666666666666542 321 2245555555555555554332 444455555555555444
Q ss_pred cccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCcc
Q 044924 481 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIE 560 (740)
Q Consensus 481 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~ 560 (740)
+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+ ...+++|+
T Consensus 279 -------------------~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 334 (466)
T 1o6v_A 279 -------------------NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQ 334 (466)
T ss_dssp -------------------CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCC
T ss_pred -------------------cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCC
Confidence 3222 4444455555555554443222 4455555555555555554433 22345555
Q ss_pred EEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcc
Q 044924 561 QVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG 620 (740)
Q Consensus 561 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 620 (740)
.|++++|.+++. + .+.++++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 335 ~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 335 RLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 555555555532 2 27788889999999998887766 7888899999999998884
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3e-33 Score=301.04 Aligned_cols=359 Identities=19% Similarity=0.180 Sum_probs=255.5
Q ss_pred hhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCCcccccCCccccccCC
Q 044924 185 GLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHS 264 (740)
Q Consensus 185 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 264 (740)
.+..+++|++|++++|.+++. | .+..+++|++|++++|.+.+ +| ++.+++|++|++++|.+++. .+.+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~----~~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL----DVTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC----CCTTCT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee----ecCCCC
Confidence 355566777777777777643 4 56777777777777777764 32 66777777777777776642 256667
Q ss_pred ccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCE
Q 044924 265 RLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLET 344 (740)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 344 (740)
+|+.|++++|.+... | +..+++|+.|++++|.+.+ ++ ++.+++|++
T Consensus 107 ~L~~L~L~~N~l~~l----------------------------~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~ 152 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL----------------------------D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTE 152 (457)
T ss_dssp TCCEEECCSSCCSCC----------------------------C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCE
T ss_pred cCCEEECCCCcCCee----------------------------c--CCCCCcCCEEECCCCccce-ec---cccCCcCCE
Confidence 777777776655321 1 3445677777777777665 22 356777777
Q ss_pred EEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcc
Q 044924 345 LSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQ 424 (740)
Q Consensus 345 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 424 (740)
|++++|...+.+ .+..+++|+.|++++|.+++ +| ...+++|++|++++|.+++. .+..+++|++|++++|+
T Consensus 153 L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 153 LDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp EECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSC
T ss_pred EECCCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCc
Confidence 777777544433 46677788888888888773 55 22367788888888887754 36777888888888888
Q ss_pred cccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcc
Q 044924 425 LIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 504 (740)
Q Consensus 425 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 504 (740)
+.+ +| +..+++|++|++++|.+++.. ...+++|+.|++++| +|+.|++++|.+.+.+|
T Consensus 224 l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 224 LTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred ccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 774 55 345778888888888877643 345677777777654 45667778887766665
Q ss_pred cccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcc
Q 044924 505 WLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSL 584 (740)
Q Consensus 505 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 584 (740)
++.+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++++ ++ +.++++|
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~---l~~l~~L 341 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD---VSHNTKL 341 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC---CTTCTTC
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc---cccCCcC
Confidence 56788888888888887766663 4456777777665 478899999999886 32 7889999
Q ss_pred eEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCC
Q 044924 585 VTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFD 651 (740)
Q Consensus 585 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 651 (740)
+.|++++|++++ ++.|..|++++|.+.|. +.+..|+.+++++|.++|.+|..+.
T Consensus 342 ~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 342 KSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp SEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred cEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 999999999985 35677788999998865 3456788899999999999997654
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=299.09 Aligned_cols=336 Identities=20% Similarity=0.184 Sum_probs=285.5
Q ss_pred CCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEE
Q 044924 315 HDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISF 394 (740)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 394 (740)
++++.|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..+++|+.|++++|.++ .+|...+..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 57899999999988644443 578999999999999999888889999999999999999998 6777666668999999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcC
Q 044924 395 NISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF 474 (740)
Q Consensus 395 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 474 (740)
++++|.+++..+..|..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 999999998888899999999999999999874 4444456799999999999999988888899999999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccc
Q 044924 475 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF 554 (740)
Q Consensus 475 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 554 (740)
.+..+..|..+++|++|++++|...+.++.......+|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..+
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 98888889999999999999999888888777777799999999999997666789999999999999999998877766
Q ss_pred c-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCC
Q 044924 555 H-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQ 633 (740)
Q Consensus 555 ~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 633 (740)
. +++|+.|++++|.+.+..+.. |.++++|++|+|++|.+++..+..|..+++|++|+|++|++...-+ ...-.....
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~~~~~~ 346 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYA-FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWVFRRRW 346 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTT-BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHHHTTTT
T ss_pred cccccCCEEECCCCccceECHHH-hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhHHhhhh
Confidence 5 899999999999999655554 9999999999999999998888889999999999999999973321 111122344
Q ss_pred EEeCCCCccccCCCCCCCcccc
Q 044924 634 LLDLSNNNLHGHIPPCFDNTTL 655 (740)
Q Consensus 634 ~L~l~~n~~~~~~p~~~~~~~~ 655 (740)
.+++.++...+..|..+.+..+
T Consensus 347 ~~~~~~~~~~C~~p~~~~g~~l 368 (477)
T 2id5_A 347 RLNFNRQQPTCATPEFVQGKEF 368 (477)
T ss_dssp SSCCTTCCCBEEESGGGTTCBG
T ss_pred ccccCccCceeCCchHHcCCch
Confidence 4566677777777766555444
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.7e-31 Score=285.79 Aligned_cols=356 Identities=19% Similarity=0.217 Sum_probs=246.8
Q ss_pred CCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCcccCCCCcccccCcCC
Q 044924 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTS 240 (740)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 240 (740)
+++|++|+++++. +..+| ++..+++|++|++++|.+++. + ++.+++|++|++++|.+.+ ++ ++++++
T Consensus 41 l~~L~~L~Ls~n~-----l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSS-----ITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSC-----CCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTT
T ss_pred cCCCCEEEccCCC-----cccCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCc
Confidence 5566666666541 11122 456667777777777777653 3 6667777777777777664 22 666777
Q ss_pred ccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchhhccCCCccEE
Q 044924 241 IEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKFLYHQHDLVNV 320 (740)
Q Consensus 241 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L 320 (740)
|++|++++|.+++ + .+..+++|+.|++++|.+... + +..+++|+.|
T Consensus 108 L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l----------------------------~--l~~l~~L~~L 153 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEI----------------------------D--VSHNTQLTEL 153 (457)
T ss_dssp CCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCC----------------------------C--CTTCTTCCEE
T ss_pred CCEEECCCCcCCe-e---cCCCCCcCCEEECCCCcccee----------------------------c--cccCCcCCEE
Confidence 7777777777664 2 256677777777777665431 1 2345677777
Q ss_pred EccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCc
Q 044924 321 DLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 400 (740)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 400 (740)
++++|...+.++ +..+++|+.|++++|.+++. .+..+++|+.|++++|.+++ ++ + ..+++|++|++++|.
T Consensus 154 ~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l---~l~~l~~L~~L~l~~N~l~~-~~--l-~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 154 DCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK-LD--L-NQNIQLTFLDCSSNK 223 (457)
T ss_dssp ECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC---CCTTCTTCCEEECCSSCCSC-CC--C-TTCTTCSEEECCSSC
T ss_pred ECCCCCcccccc---cccCCcCCEEECCCCcccee---ccccCCCCCEEECcCCcCCe-ec--c-ccCCCCCEEECcCCc
Confidence 777775555553 35678888888888887763 26778888888888888874 33 2 236788888888888
Q ss_pred CCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCc
Q 044924 401 LNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQ 480 (740)
Q Consensus 401 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 480 (740)
+++ +| +..+++|++|++++|.+.+ +|. ..+++|+.|+++.| +|+.+++++|.+.+.+|
T Consensus 224 l~~-ip--~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 224 LTE-ID--VTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred ccc-cC--ccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 886 45 7788889999999888774 442 34778888887764 45667777887766665
Q ss_pred cccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCcc
Q 044924 481 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIE 560 (740)
Q Consensus 481 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~ 560 (740)
++.+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. + ...+++|+
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~-l~~l~~L~ 342 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D-VSHNTKLK 342 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C-CTTCTTCS
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c-cccCCcCc
Confidence 46778888888888887766664 3455666655543 5788888888888874 2 44578888
Q ss_pred EEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccC
Q 044924 561 QVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCG 628 (740)
Q Consensus 561 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 628 (740)
.|++++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+..
T Consensus 343 ~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 343 SLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred EEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 88888888764 24566677888888765 35567888899999999998876543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=7.5e-31 Score=274.07 Aligned_cols=307 Identities=21% Similarity=0.301 Sum_probs=259.2
Q ss_pred hccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCC
Q 044924 311 LYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPS 390 (740)
Q Consensus 311 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 390 (740)
+..+++++.++++++.+.. ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred chhcccccEEEEeCCcccc-chh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence 3467899999999998863 444 5689999999999999887554 889999999999999998 4553 344889
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcc
Q 044924 391 LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLE 470 (740)
Q Consensus 391 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 470 (740)
|++|++++|.+++. +. +..+++|++|++++|.....++. +..+++|++|++++|.+....+ +..+++|+.|+++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 99999999999854 33 88999999999999976655554 4579999999999999887554 7789999999999
Q ss_pred cCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCC
Q 044924 471 SNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL 550 (740)
Q Consensus 471 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 550 (740)
+|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.
T Consensus 186 ~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 186 YNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred CCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 9998843 33 8889999999999999986544 8889999999999999986544 88999999999999999864
Q ss_pred CccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCC
Q 044924 551 PSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLN 630 (740)
Q Consensus 551 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 630 (740)
+....+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++..|..+.++++|++|++++|++++..| +..++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred hhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 555568999999999999985 33 38899999999999999998889999999999999999999996656 78899
Q ss_pred CCCEEeCCCCccc
Q 044924 631 QLQLLDLSNNNLH 643 (740)
Q Consensus 631 ~L~~L~l~~n~~~ 643 (740)
+|++|++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999985
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=8.7e-31 Score=278.02 Aligned_cols=311 Identities=22% Similarity=0.201 Sum_probs=261.4
Q ss_pred cCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCc
Q 044924 313 HQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLI 392 (740)
Q Consensus 313 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 392 (740)
.+++++.++++++.+. .+|..++..+++|++|+++++.+.+..+..+..+++|+.|++++|.+++ ++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCC
Confidence 4578999999999876 5777777899999999999999988877889999999999999999984 4444444489999
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccC
Q 044924 393 SFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN 472 (740)
Q Consensus 393 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 472 (740)
+|++++|.++...+..|.++++|++|++++|.+.+ ++...+..+++|++|++++|.+++. .+..+++|+.+++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 99999999996555567899999999999999874 5544456799999999999998875 3556899999999999
Q ss_pred cCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCc
Q 044924 473 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPS 552 (740)
Q Consensus 473 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 552 (740)
.+.+ +...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 8873 23446899999999998744 432 358999999999999854 5788999999999999999988777
Q ss_pred ccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCC
Q 044924 553 CFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQ 631 (740)
Q Consensus 553 ~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 631 (740)
.+. +++|+.|++++|.+++ ++.. +..+++|++|+|++|+++ .+|..+..+++|++|++++|++++ +| +..+++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~ 340 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHT 340 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCC
T ss_pred HccccccCCEEECCCCcCcc-cCcc-cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhcc
Confidence 765 8999999999999984 5554 678999999999999998 567778899999999999999984 44 678899
Q ss_pred CCEEeCCCCccccC
Q 044924 632 LQLLDLSNNNLHGH 645 (740)
Q Consensus 632 L~~L~l~~n~~~~~ 645 (740)
|+.|++++|++.+.
T Consensus 341 L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 341 LKNLTLSHNDWDCN 354 (390)
T ss_dssp CSEEECCSSCEEHH
T ss_pred CCEEEcCCCCccch
Confidence 99999999999864
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=4.3e-30 Score=287.61 Aligned_cols=312 Identities=21% Similarity=0.185 Sum_probs=263.8
Q ss_pred cCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCc
Q 044924 313 HQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLI 392 (740)
Q Consensus 313 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 392 (740)
.+++++.++++++.+. .+|..++..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+++ ++...+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCC
Confidence 3578999999999876 5777777899999999999999998888889999999999999999985 5544444589999
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccC
Q 044924 393 SFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN 472 (740)
Q Consensus 393 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 472 (740)
+|++++|.+++..+..|.++++|++|++++|.+.+..|. .+..+++|++|++++|.+++.. +..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 999999999966666689999999999999998854444 4457999999999999998753 456789999999999
Q ss_pred cCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCc
Q 044924 473 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPS 552 (740)
Q Consensus 473 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 552 (740)
.+.+ +...++|+.|++++|.+... +..+ .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 8874 34456899999999998743 3322 3789999999999985 46788999999999999999988887
Q ss_pred ccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCC
Q 044924 553 CFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQ 631 (740)
Q Consensus 553 ~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 631 (740)
.+. +++|+.|+|++|.+++ ++.. +..+++|+.|+|++|.++ .+|..+..+++|++|+|++|++++. | +..+++
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~ 346 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT 346 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred HhcCccCCCEEECCCCCCCC-CCcc-cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCC
Confidence 765 8999999999999985 5554 677999999999999999 6777889999999999999999844 3 677899
Q ss_pred CCEEeCCCCccccCC
Q 044924 632 LQLLDLSNNNLHGHI 646 (740)
Q Consensus 632 L~~L~l~~n~~~~~~ 646 (740)
|+.|++++|++.|..
T Consensus 347 L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 347 LKNLTLSHNDWDCNS 361 (597)
T ss_dssp CSEEECCSSCEEHHH
T ss_pred CCEEEeeCCCCCChh
Confidence 999999999998754
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.5e-30 Score=274.45 Aligned_cols=262 Identities=23% Similarity=0.210 Sum_probs=187.1
Q ss_pred CCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEe
Q 044924 340 TRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILD 419 (740)
Q Consensus 340 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 419 (740)
++|++|++++|.+.+..+..+..+++|+.|++++|.++ .+|...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 33333333333333333344455555666666666665 55555544466777777777777766666677777777777
Q ss_pred ccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCC
Q 044924 420 LSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLS 499 (740)
Q Consensus 420 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 499 (740)
+++|.+.+ ++ ...+++|++|++++|.+.+. ...++|+.|++++|.+... |.. ..++|++|++++|.+.
T Consensus 172 l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 172 LSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLT 239 (390)
T ss_dssp CCSSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCC
T ss_pred CCCCcCCc-cc---cccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCc
Confidence 77777653 33 23467778888887776642 2345788888888887743 332 2467888888888887
Q ss_pred CCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccc
Q 044924 500 GKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFF 579 (740)
Q Consensus 500 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 579 (740)
+. ..+..+++|++|++++|.+++..|..|..+++|++|++++|++.+.......+++|+.|++++|.+. .++.. +.
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~ 315 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERN-QP 315 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGG-HH
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcc-cc
Confidence 53 5678888888888888888877788888888999999999888865554555788999999999887 56655 78
Q ss_pred cCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCccc
Q 044924 580 NCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGE 621 (740)
Q Consensus 580 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 621 (740)
.+++|++|+|++|.+++. + +..+++|++|++++|++...
T Consensus 316 ~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 889999999999999854 3 77889999999999999743
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2e-29 Score=263.31 Aligned_cols=282 Identities=20% Similarity=0.283 Sum_probs=194.7
Q ss_pred CCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcE
Q 044924 314 QHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLIS 393 (740)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 393 (740)
+++|++|++++|.+.+ ++. +..+++|++|++++|.+... ..+..+++|+.|++++|.+. .++. ...+++|++
T Consensus 65 ~~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~-~~~~--~~~l~~L~~ 136 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD-ISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS-DISP--LANLTKMYS 136 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCC-CCGG--GTTCTTCCE
T ss_pred cCCccEEEccCCcccc-chh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCccc-Cchh--hccCCceeE
Confidence 3444444444444432 222 34555556666655555542 23556666777777777666 3443 233667777
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCc
Q 044924 394 FNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNH 473 (740)
Q Consensus 394 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 473 (740)
|++++|......+ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|+.+++++|.
T Consensus 137 L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 137 LNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp EECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCC
Confidence 7777775543333 36777778888887777653 333 3457778888888887775433 6677888888888887
Q ss_pred CcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcc
Q 044924 474 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSC 553 (740)
Q Consensus 474 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 553 (740)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. +..
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~ 283 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVL 283 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGG
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhh
Confidence 774333 6777888888888888875433 77888888888888888753 4677888888888888888764 444
Q ss_pred ccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 554 FHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 554 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
..+++|+.|++++|.+.+..+.. +..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55788888888888887555544 8899999999999999997666 888999999999999886
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.4e-31 Score=271.15 Aligned_cols=255 Identities=29% Similarity=0.420 Sum_probs=168.3
Q ss_pred CCccEEEcccCcCCC--cCchhHhhhCCCCcEEEccC-CcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCC
Q 044924 364 KQLRLLDVSNNNFQG--HIPVEIGDILPSLISFNISM-NALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNL 440 (740)
Q Consensus 364 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 440 (740)
.+++.|+++++.+.+ .+|..+.. +++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+.+|..+. .+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCC
Confidence 356677777777766 56655554 56666666663 666666666666666666666666666655555443 46666
Q ss_pred cEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCC-CCCEEEccCCcCCCCCcccccCCCCCceecccC
Q 044924 441 EYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPE 519 (740)
Q Consensus 441 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 519 (740)
++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..++ |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 6666666666655555555556666666666655555555555554 555555555555555555555544 55555555
Q ss_pred CcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCC
Q 044924 520 NHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 599 (740)
Q Consensus 520 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 599 (740)
|.+++..|..|..+++|++|++++| .+.+.++. +..+++|++|+|++|.+++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N-----------------------~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKN-----------------------SLAFDLGK--VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSS-----------------------EECCBGGG--CCCCTTCCEEECCSSCCEECCC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCC-----------------------ceeeecCc--ccccCCCCEEECcCCcccCcCC
Confidence 5555555555555555555555555 44433333 6677899999999999998899
Q ss_pred ccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCC
Q 044924 600 NWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 600 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 647 (740)
..+..+++|++|+|++|++++.+|.. ..+++|+.+++++|+..+..|
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999999999999999999888886 889999999999998554433
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=273.21 Aligned_cols=286 Identities=21% Similarity=0.196 Sum_probs=193.2
Q ss_pred ccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeC
Q 044924 366 LRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTL 445 (740)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 445 (740)
...++..+..++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 445666666666 6665543 46777777777776666666677777777777777665 344444455666666666
Q ss_pred CCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCC
Q 044924 446 SNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGP 525 (740)
Q Consensus 446 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 525 (740)
++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i----------------------- 176 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI----------------------- 176 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------------------
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee-----------------------
Confidence 666666555555666666666666666665444445555566666666553322222
Q ss_pred CchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCc
Q 044924 526 IPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGL 605 (740)
Q Consensus 526 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 605 (740)
.+..|.++++|++|++++|.++ .+|....+++|+.|+|++|.+++..+ ..|.++++|+.|+|++|.+++..+..|.++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred CcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 2223444445555555555444 22333335556666666666554333 348999999999999999999999999999
Q ss_pred CCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCCCCccccccccccccccccccee
Q 044924 606 SQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTV 685 (740)
Q Consensus 606 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (740)
++|++|+|++|++++..+..|..+++|+.|++++|++. |+|.+.++..|+...... .....
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~-----------------CdC~l~~l~~~~~~~~~~--~~~~~ 315 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN-----------------CNCDILWLSWWIKDMAPS--NTACC 315 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE-----------------CSSTTHHHHHHHHTTSCS--SCSCC
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc-----------------CCCCchHHHHHHHhcccc--CCccc
Confidence 99999999999999888888899999999999999998 788888887776543221 22345
Q ss_pred EEEeccccccccCCC
Q 044924 686 MVLSSSSSLATLTLN 700 (740)
Q Consensus 686 ~~~~~p~~~~~~~~~ 700 (740)
++|.+|+.+.|..+.
T Consensus 316 ~~C~~P~~l~g~~l~ 330 (440)
T 3zyj_A 316 ARCNTPPNLKGRYIG 330 (440)
T ss_dssp CBEEESTTTTTCBCC
T ss_pred cCCCChhHhcCccHh
Confidence 789999999998765
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.6e-29 Score=260.26 Aligned_cols=287 Identities=20% Similarity=0.234 Sum_probs=206.5
Q ss_pred CCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEec
Q 044924 341 RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDL 420 (740)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 420 (740)
.++.++++++.+... +..+ .++++.|++++|.++ .++...+..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 466666666665532 2222 356777777777776 333333333677888888887777666777777888888888
Q ss_pred cCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCc--ccCCccccCCCCCCEEEccCCcC
Q 044924 421 SNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFV--GEIPQSLSKCSSLEGLYLNNNSL 498 (740)
Q Consensus 421 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~ 498 (740)
++|.+. .+|..++ ++|++|++++|.+....+..+..+++|+.|++++|.++ +..+..+..+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888766 5665543 67888888888877766666777888888888888775 2556666666 788888888877
Q ss_pred CCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccc
Q 044924 499 SGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGT 577 (740)
Q Consensus 499 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~ 577 (740)
.+ +|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+. +++|+.|++++|.+. .+|..
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~- 259 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG- 259 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT-
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh-
Confidence 74 454443 6788888888888877777788888888888888888776665544 778888888888777 66666
Q ss_pred cccCCcceEEEccCCcCCCCCCccccC------cCCCcEEEcCCCcCc--ccCCccccCCCCCCEEeCCCCc
Q 044924 578 FFNCSSLVTLDLSYNRLNGSIPNWVDG------LSQLRHLILGHNNLE--GEVPVQLCGLNQLQLLDLSNNN 641 (740)
Q Consensus 578 ~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~l~~n~ 641 (740)
+..+++|++|++++|++++..+..|.. .++|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 788888999999988888777776654 367888999999886 5677888888899999988874
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.2e-29 Score=272.37 Aligned_cols=285 Identities=22% Similarity=0.176 Sum_probs=181.2
Q ss_pred cEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCC
Q 044924 367 RLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLS 446 (740)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 446 (740)
..++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|+++
T Consensus 57 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred cEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECC
Confidence 45555555555 4554432 35566666666665555555555556666666555554 2332333345555555555
Q ss_pred CCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCC
Q 044924 447 NNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPI 526 (740)
Q Consensus 447 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 526 (740)
+|.++...+..+..+++|++|++++|.+....+..|..+++|++|++++|. .+....
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~ 188 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------KLEYIS 188 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEEC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------CccccC
Confidence 555554444444455555555555555443333344444444444444432 222222
Q ss_pred chhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcC
Q 044924 527 PMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLS 606 (740)
Q Consensus 527 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 606 (740)
+..|.++++|++|++++|++.+. |....+++|+.|++++|.+.+..+. .|.++++|+.|+|++|.+++..|..|.+++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcc-cccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 33455556666666666665533 3444456666666666666644444 499999999999999999999999999999
Q ss_pred CCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCCCCcccccccccccccccccceeE
Q 044924 607 QLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVM 686 (740)
Q Consensus 607 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (740)
+|++|+|++|++++..+..|..+++|+.|++++|++. |+|.+.++..|+...... .....+
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~-----------------CdC~~~~l~~~l~~~~~~--~~~~~~ 327 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN-----------------CDCDILWLAWWLREYIPT--NSTCCG 327 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE-----------------CSTTTHHHHHHHHHHC-----CCSSC
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC-----------------CCCCchHHHHHHHHhCcc--CCccCc
Confidence 9999999999999777888899999999999999998 778887777776543211 122356
Q ss_pred EEeccccccccCCC
Q 044924 687 VLSSSSSLATLTLN 700 (740)
Q Consensus 687 ~~~~p~~~~~~~~~ 700 (740)
.|.+|+.+.|..+.
T Consensus 328 ~C~~P~~l~g~~l~ 341 (452)
T 3zyi_A 328 RCHAPMHMRGRYLV 341 (452)
T ss_dssp BEEESTTTTTCBTT
T ss_pred EeCCchHhccchhh
Confidence 89999999998765
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.8e-29 Score=279.99 Aligned_cols=262 Identities=23% Similarity=0.212 Sum_probs=187.4
Q ss_pred CCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEe
Q 044924 340 TRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILD 419 (740)
Q Consensus 340 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 419 (740)
++|+.|++++|.+.+..+..++.+++|+.|++++|.++ .+|...+..+++|++|++++|.+++..|..|.++++|++|+
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 33333334334333333344455555666666666665 45555444466777777777777766666777777777777
Q ss_pred ccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCC
Q 044924 420 LSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLS 499 (740)
Q Consensus 420 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 499 (740)
+++|.+.+ ++. ..+++|++|++++|.+.+. ...++|+.|++++|.+... +..+ .++|+.|++++|.+.
T Consensus 178 L~~N~l~~-~~~---~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 178 LSSNRLTH-VDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLT 245 (597)
T ss_dssp CTTSCCSB-CCG---GGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCC
T ss_pred CcCCCCCC-cCh---hhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCC
Confidence 77777663 332 3467778888877776642 2346788888888887633 3222 257888888888887
Q ss_pred CCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccc
Q 044924 500 GKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFF 579 (740)
Q Consensus 500 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 579 (740)
+ +..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+....+++|+.|+|++|.+. .+|.. +.
T Consensus 246 ~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~-~~ 321 (597)
T 3oja_B 246 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERN-QP 321 (597)
T ss_dssp C--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGG-HH
T ss_pred C--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcc-cc
Confidence 5 36788888899999998888888888888888999999999988876554545888999999999888 56665 78
Q ss_pred cCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCccc
Q 044924 580 NCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGE 621 (740)
Q Consensus 580 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 621 (740)
.+++|++|+|++|.+++. | +..+++|++|++++|++.+.
T Consensus 322 ~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 899999999999999855 3 67789999999999998754
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.1e-29 Score=256.41 Aligned_cols=268 Identities=20% Similarity=0.201 Sum_probs=178.6
Q ss_pred CCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEE
Q 044924 364 KQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYL 443 (740)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 443 (740)
+.++.|++++|.++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|.+. .+|..++ ++|++|
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEE
Confidence 45666666666666 333332333566677777766666655666667777777777777655 5555432 567777
Q ss_pred eCCCCcccCcCccccCCCCCCCEEEcccCcCcc--cCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCc
Q 044924 444 TLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVG--EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENH 521 (740)
Q Consensus 444 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 521 (740)
++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+. ++|++|++++|.
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCc
Confidence 777777766666666677777777777776642 455666777777777777777663 344332 677777777777
Q ss_pred ccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCc
Q 044924 522 LEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPN 600 (740)
Q Consensus 522 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 600 (740)
+++..+..|..+++|++|++++|.+.+..+..+. +++|+.|++++|.+. .+|.. +..+++|++|++++|++++..+.
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChh
Confidence 7766667777777777777777777766554443 667777777777766 56655 77788888888888888876666
Q ss_pred cccC------cCCCcEEEcCCCcCcc--cCCccccCCCCCCEEeCCCCc
Q 044924 601 WVDG------LSQLRHLILGHNNLEG--EVPVQLCGLNQLQLLDLSNNN 641 (740)
Q Consensus 601 ~~~~------l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~ 641 (740)
.|.. .++|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6643 3678888888888753 556778888888888888874
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4e-30 Score=263.21 Aligned_cols=250 Identities=26% Similarity=0.391 Sum_probs=221.3
Q ss_pred CCCCEEEecCCCCCC--CCCCCCCCCCCccEEEccc-CcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCc
Q 044924 340 TRLETLSLVNDSLAG--PFRLPIHSHKQLRLLDVSN-NNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQ 416 (740)
Q Consensus 340 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 416 (740)
.+++.|+++++.+.+ .++..+..+++|+.|++++ |.+.+.+|..+.. +++|++|++++|.+++..|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999998 7888999999999999995 9999889988776 89999999999999989999999999999
Q ss_pred EEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCC-CCCEEEcccCcCcccCCccccCCCCCCEEEccC
Q 044924 417 ILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLT-NLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNN 495 (740)
Q Consensus 417 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 495 (740)
+|++++|.+.+.+|..+. .+++|++|++++|.+++..|..+..++ +|+.|++++|.+++.+|..+..++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 999999999988888775 699999999999999988999999998 999999999999999999999987 99999999
Q ss_pred CcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccc
Q 044924 496 NSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKR 575 (740)
Q Consensus 496 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 575 (740)
|.+.+..|..|..+++|+.|++++|.+++.+|. +..+++|++|++++|.+.+. +|.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~-----------------------~p~ 262 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT-----------------------LPQ 262 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC-----------------------CCG
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc-----------------------CCh
Confidence 999989999999999999999999999876665 77788888888888877643 333
Q ss_pred cccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcC
Q 044924 576 GTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNL 618 (740)
Q Consensus 576 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 618 (740)
. +..+++|++|+|++|++++.+|.. ..+++|++|++++|+.
T Consensus 263 ~-l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 263 G-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp G-GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred H-HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 3 667778888888888888777775 7788888888888873
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.7e-29 Score=256.12 Aligned_cols=286 Identities=20% Similarity=0.220 Sum_probs=190.0
Q ss_pred cEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccc--cchhhhhcCCCCcEEe
Q 044924 367 RLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE--IPEHLAVGCVNLEYLT 444 (740)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~ 444 (740)
+.++.+++.++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+... .+..+. .+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEE
Confidence 45667777766 6665442 4677777777777644444566777777777777765521 133333 466677777
Q ss_pred CCCCcccCcCccccCCCCCCCEEEcccCcCcccCC-ccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCccc
Q 044924 445 LSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLE 523 (740)
Q Consensus 445 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 523 (740)
+++|.+.. ++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 76666654 33445556666666666666653332 34555555666666665555555555555555555555555554
Q ss_pred C-CCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccc
Q 044924 524 G-PIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWV 602 (740)
Q Consensus 524 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 602 (740)
+ ..|..+..+++|++|++++|. +++..+. .+..+++|++|+|++|.+++..+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~-----------------------l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQ-----------------------LEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSC-----------------------CCEECTT-TTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred cccchhHHhhCcCCCEEECCCCC-----------------------cCCcCHH-HhcCCCCCCEEECCCCccCccChhhc
Confidence 3 344445555555555555554 4433333 38889999999999999998888889
Q ss_pred cCcCCCcEEEcCCCcCcccCCccccCCC-CCCEEeCCCCccccCCCCCCCcccccccccCCCCCcccccccccccccccc
Q 044924 603 DGLSQLRHLILGHNNLEGEVPVQLCGLN-QLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYA 681 (740)
Q Consensus 603 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (740)
..+++|++|++++|++++..|..+..++ +|++|++++|++. |+|...+|..|+..... ...
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~-----------------~~c~~~~~~~~l~~~~~-~~~ 281 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA-----------------CTCEHQSFLQWIKDQRQ-LLV 281 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE-----------------CSGGGHHHHHHHHHTGG-GBS
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee-----------------cccChHHHHHHHHhhhh-hhc
Confidence 9999999999999999999999999985 9999999999998 55666666666653322 233
Q ss_pred cceeEEEeccccccccCCC
Q 044924 682 EKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 682 ~~~~~~~~~p~~~~~~~~~ 700 (740)
....++|..|+.+.|.++.
T Consensus 282 ~~~~~~C~~p~~~~g~~~~ 300 (306)
T 2z66_A 282 EVERMECATPSDKQGMPVL 300 (306)
T ss_dssp CGGGCBEEESGGGTTCBGG
T ss_pred cccccccCCchhhCCceee
Confidence 4567899999999998765
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.9e-32 Score=296.88 Aligned_cols=336 Identities=20% Similarity=0.152 Sum_probs=215.6
Q ss_pred chhhccCCCccEEEccCccccCCcchHHhhcCC----CCCEEEecCCCCCC----CCCCCCCCCCCccEEEcccCcCCCc
Q 044924 308 PKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNT----RLETLSLVNDSLAG----PFRLPIHSHKQLRLLDVSNNNFQGH 379 (740)
Q Consensus 308 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~ 379 (740)
+..+..+++|++|++++|.+.+..+..++..++ +|++|++++|.+.. .++..+..+++|+.|++++|.+++.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 445556677777777777766544555555555 58888888887764 2355567788888888888887755
Q ss_pred CchhHhhh----CCCCcEEEccCCcCCCCC----CccccCCCCCcEEeccCcccccccchhhhh----cCCCCcEEeCCC
Q 044924 380 IPVEIGDI----LPSLISFNISMNALNGSI----PSSFGNINSLQILDLSNNQLIGEIPEHLAV----GCVNLEYLTLSN 447 (740)
Q Consensus 380 ~~~~~~~~----l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~L~l~~ 447 (740)
.+..+... .++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+.. ..++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 44444432 346888888888887533 445666788888888888776443333322 355888888888
Q ss_pred CcccCc----CccccCCCCCCCEEEcccCcCcccC-----CccccCCCCCCEEEccCCcCCCC----CcccccCCCCCce
Q 044924 448 NNLEGH----MFTRNFNLTNLRWLQLESNHFVGEI-----PQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLKGLKH 514 (740)
Q Consensus 448 n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~ 514 (740)
|.++.. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..+..+++|++
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 887764 3555667788888888888776432 22233577888888888877643 4556666788888
Q ss_pred ecccCCcccCCCchhhhC-----CCCCcEEEcccCcCCCCC----Ccccc-ccCccEEecCCcccccccccc---ccc-c
Q 044924 515 IIMPENHLEGPIPMEFCQ-----LYSLQLLDISDNNISGSL----PSCFH-LLSIEQVHLSKNMLRGQLKRG---TFF-N 580 (740)
Q Consensus 515 L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~----~~~~~-~~~L~~L~L~~n~~~~~~~~~---~~~-~ 580 (740)
|++++|.+++..+..+.. .++|++|++++|.+++.. +..+. +++|+.|++++|.+.+..+.. .+. .
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCC
Confidence 888888776544444432 257888888888776542 22222 467777777777665432221 011 1
Q ss_pred CCcceEEEccCCcCCC----CCCccccCcCCCcEEEcCCCcCcccCCcc----cc-CCCCCCEEeCCCCccc
Q 044924 581 CSSLVTLDLSYNRLNG----SIPNWVDGLSQLRHLILGHNNLEGEVPVQ----LC-GLNQLQLLDLSNNNLH 643 (740)
Q Consensus 581 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~----~~-~l~~L~~L~l~~n~~~ 643 (740)
.++|++|+|++|.+++ .+|..+..+++|++|++++|++++..... +. ....|+.|++.++.+.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 5677777777777764 55666666777777777777776431111 11 1335666666666554
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9.4e-28 Score=248.40 Aligned_cols=289 Identities=19% Similarity=0.208 Sum_probs=220.3
Q ss_pred CccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEE
Q 044924 316 DLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFN 395 (740)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 395 (740)
+++.++++++.+. .+|..+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence 5778888877765 455432 367888888888888777777888888888888888888554555544 78888888
Q ss_pred ccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccC--cCccccCCCCCCCEEEcccCc
Q 044924 396 ISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEG--HMFTRNFNLTNLRWLQLESNH 473 (740)
Q Consensus 396 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 473 (740)
+++|.++ .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 8888887 4555443 78888888888877 5555555678888888888888853 566778888888888888888
Q ss_pred CcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcc
Q 044924 474 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSC 553 (740)
Q Consensus 474 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 553 (740)
++ .+|..+. ++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+++|++|++++|++.......
T Consensus 183 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 259 (330)
T 1xku_A 183 IT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259 (330)
T ss_dssp CC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred cc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh
Confidence 87 4555443 68888999888888777788888888999999888888777778888888999999988888544444
Q ss_pred ccccCccEEecCCcccccccccccccc------CCcceEEEccCCcCCC--CCCccccCcCCCcEEEcCCCc
Q 044924 554 FHLLSIEQVHLSKNMLRGQLKRGTFFN------CSSLVTLDLSYNRLNG--SIPNWVDGLSQLRHLILGHNN 617 (740)
Q Consensus 554 ~~~~~L~~L~L~~n~~~~~~~~~~~~~------l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~ 617 (740)
..+++|+.|++++|.++ .++...|.. .+.++.|++++|++.. ..|..|..+.+++.++|++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 45888889999988887 444443543 3788999999999863 667889999999999999985
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.8e-28 Score=250.70 Aligned_cols=288 Identities=20% Similarity=0.233 Sum_probs=238.1
Q ss_pred CccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEE
Q 044924 316 DLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFN 395 (740)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 395 (740)
.++.++++++.+. .+|..+ .+.++.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+.. +++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence 6889999988876 566543 368999999999998877788999999999999999998555555544 88999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccC--cCccccCCCCCCCEEEcccCc
Q 044924 396 ISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEG--HMFTRNFNLTNLRWLQLESNH 473 (740)
Q Consensus 396 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 473 (740)
+++|.++ .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 9999998 5555444 89999999999987 6676666789999999999999863 667777777 99999999999
Q ss_pred CcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcc
Q 044924 474 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSC 553 (740)
Q Consensus 474 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 553 (740)
+++ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++....+..
T Consensus 184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 260 (332)
T 2ft3_A 184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260 (332)
T ss_dssp CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTG
T ss_pred CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhh
Confidence 984 565544 68999999999999888889999999999999999999888888999999999999999999554445
Q ss_pred ccccCccEEecCCcccccccccccccc------CCcceEEEccCCcCC--CCCCccccCcCCCcEEEcCCCc
Q 044924 554 FHLLSIEQVHLSKNMLRGQLKRGTFFN------CSSLVTLDLSYNRLN--GSIPNWVDGLSQLRHLILGHNN 617 (740)
Q Consensus 554 ~~~~~L~~L~L~~n~~~~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~ 617 (740)
..+++|+.|++++|.++ .++...|.. .+.|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55899999999999998 454444554 367999999999987 6788899999999999999985
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.9e-30 Score=280.01 Aligned_cols=395 Identities=21% Similarity=0.201 Sum_probs=216.2
Q ss_pred CCCCcEEecCCCcCCchhhH-hhhcCCCCCEEEcCCCcCCCc----cChhhhcCCCCCcEEeCCCCccCCCcCCccccCC
Q 044924 7 LTNLKMLDLRGNLFNNSILS-SLAHLSSLTSLDLSENKLEGS----INVKEFDSLSNLEELDMSGNEIDNFQVPQGYGGL 81 (740)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~Ls~~~~~~~----i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 81 (740)
.++|++|||+++.++..... .+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.+.+.........+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 46789999999999866444 488999999999999998732 23 3678889999999999988754222223334
Q ss_pred C----CCcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcchhhhHHh
Q 044924 82 R----KLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNTSFLQII 157 (740)
Q Consensus 82 ~----~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 157 (740)
+ +|++|++++|.+++...... ...+..+++|++|++++|. +.+.....+
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l-------------------------~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l 133 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVL-------------------------SSTLRTLPTLQELHLSDNL--LGDAGLQLL 133 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHH-------------------------HHHTTSCTTCCEEECCSSB--CHHHHHHHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHH-------------------------HHHHccCCceeEEECCCCc--CchHHHHHH
Confidence 4 79999999998765321111 1235566677777777763 322222222
Q ss_pred h----hcCCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhc-----CCCCcEEEcCCCcccC
Q 044924 158 G----ELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLAN-----MTSLRILDVSSNQLTG 228 (740)
Q Consensus 158 ~----~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~ 228 (740)
. ...++|+.|++++|.........++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 2 113457777776662222233344555666677777777777766543333332 4577777777777664
Q ss_pred C----CCcccccCcCCccEEEccCCcccccCC----ccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccc
Q 044924 229 S----ISSSPLIHLTSIEELRLSDNHFRIPIS----LEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFG 300 (740)
Q Consensus 229 ~----~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 300 (740)
. ++. .+..+++|++|++++|.+..... ......+++|+.|++++|.+....
T Consensus 214 ~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~-------------------- 272 (461)
T 1z7x_W 214 DNCRDLCG-IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG-------------------- 272 (461)
T ss_dssp THHHHHHH-HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--------------------
T ss_pred HHHHHHHH-HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH--------------------
Confidence 2 222 45566777777777776552110 011123455555555555443210
Q ss_pred cCCCCCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcC
Q 044924 301 YGDGVTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHI 380 (740)
Q Consensus 301 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 380 (740)
...++..+..+++|+.|++++|.+.+..+..+...+ ....++|+.|++++|.+++..
T Consensus 273 ---~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------------~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 273 ---CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL--------------------LEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp ---HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------------------TSTTCCCCEEECTTSCCBGGG
T ss_pred ---HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------------------ccCCccceeeEcCCCCCchHH
Confidence 001244444556666666666655433222221111 011234444455555444321
Q ss_pred ----chhHhhhCCCCcEEEccCCcCCCCCCccccC-----CCCCcEEeccCccccc----ccchhhhhcCCCCcEEeCCC
Q 044924 381 ----PVEIGDILPSLISFNISMNALNGSIPSSFGN-----INSLQILDLSNNQLIG----EIPEHLAVGCVNLEYLTLSN 447 (740)
Q Consensus 381 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~----~~~~~~~~~~~~L~~L~l~~ 447 (740)
+..+. .+++|++|++++|.+++..+..+.. .++|++|++++|.+.+ .++..+. .+++|++|++++
T Consensus 330 ~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~ 407 (461)
T 1z7x_W 330 CSHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCS
T ss_pred HHHHHHHHh-hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH-hCCCccEEECCC
Confidence 22222 2455555555555554332222221 4566666666666553 3444433 366666666666
Q ss_pred CcccCcCccccC-----CCCCCCEEEcccCcCc
Q 044924 448 NNLEGHMFTRNF-----NLTNLRWLQLESNHFV 475 (740)
Q Consensus 448 n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~ 475 (740)
|++++.....+. ...+|+.|.+.++...
T Consensus 408 N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 666543211111 2345666666666554
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=8.3e-28 Score=243.20 Aligned_cols=259 Identities=23% Similarity=0.195 Sum_probs=179.4
Q ss_pred cEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccC
Q 044924 416 QILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNN 495 (740)
Q Consensus 416 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 495 (740)
++++.+++.+. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555444 444322 34556666666666555555556666666666666666655555666666666666666
Q ss_pred Cc-CCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccc
Q 044924 496 NS-LSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQL 573 (740)
Q Consensus 496 n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~ 573 (740)
|. +....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+. +++|+.|++++|.++ .+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence 65 5444455666666666666666666655566666666666666666666655555443 666777777777666 45
Q ss_pred cccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcc
Q 044924 574 KRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNT 653 (740)
Q Consensus 574 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~ 653 (740)
+...|..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~---------- 238 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV---------- 238 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE----------
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc----------
Confidence 5545889999999999999999888999999999999999999999777778999999999999999998
Q ss_pred cccccccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 654 TLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
|+|...++..|+.... .....+.|..|+.+.|..+.
T Consensus 239 -------c~~~~~~~~~~l~~~~----~~~~~~~c~~p~~l~g~~l~ 274 (285)
T 1ozn_A 239 -------CDCRARPLWAWLQKFR----GSSSEVPCSLPQRLAGRDLK 274 (285)
T ss_dssp -------CSGGGHHHHHHHHHCC----SEECCCBEEESGGGTTCBGG
T ss_pred -------CCCCcHHHHHHHHhcc----cccCccccCCchHhCCcChh
Confidence 5555555555554322 23456789999999987765
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=257.75 Aligned_cols=283 Identities=20% Similarity=0.194 Sum_probs=185.0
Q ss_pred cCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 044924 338 NNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQI 417 (740)
Q Consensus 338 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 417 (740)
.|+.....+++++.++... ..+ .++|+.|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP-~~~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIP-SGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSCC-TTC--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCccccc-ccc--cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3444555666666655432 222 246777777777776 444433334677777777777777666666777777777
Q ss_pred EeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCc-cccCCCCCCCEEEcccCc-CcccCCccccCCCCCCEEEccC
Q 044924 418 LDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMF-TRNFNLTNLRWLQLESNH-FVGEIPQSLSKCSSLEGLYLNN 495 (740)
Q Consensus 418 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~ 495 (740)
|++++|.+. .++...+..+++|++|++++|.++.... ..+..+++|++|++++|. +....+..|..+++|++|++++
T Consensus 105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 777777765 4555555567777777777777765444 456667777777777763 4444455666667777777777
Q ss_pred CcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccc
Q 044924 496 NSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKR 575 (740)
Q Consensus 496 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 575 (740)
|.+.+..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+... +
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-------------------~- 243 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-------------------S- 243 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc-------------------c-
Confidence 76666666666666677777777766653333334456666666666666654322211 0
Q ss_pred cccccCCcceEEEccCCcCCC----CCCccccCcCCCcEEEcCCCcCcccCCcc-ccCCCCCCEEeCCCCccccCCC
Q 044924 576 GTFFNCSSLVTLDLSYNRLNG----SIPNWVDGLSQLRHLILGHNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 576 ~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~p 647 (740)
....+..++.++|+++.+.+ .+|.++.++++|++|++++|+++ .+|.. |..+++|++|++++|++.+.+|
T Consensus 244 -~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 244 -TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 02334567777888777764 46778899999999999999999 56655 6899999999999999986543
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.8e-29 Score=278.80 Aligned_cols=427 Identities=13% Similarity=0.084 Sum_probs=229.5
Q ss_pred EEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCC---CccCh-----------hhhcCCCCCcEEeCCCCccCCCcCCcc
Q 044924 12 MLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLE---GSINV-----------KEFDSLSNLEELDMSGNEIDNFQVPQG 77 (740)
Q Consensus 12 ~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~---~~i~~-----------~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 77 (740)
.+.+..+ .....+..+..+++|++|++++|... +.+|. ..+..+++|++|+|++|.+++. .+..
T Consensus 54 ~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-~~~~ 131 (592)
T 3ogk_B 54 HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL-DLDR 131 (592)
T ss_dssp EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHH
T ss_pred EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHH-HHHH
Confidence 3444433 33345667788888888888775421 11111 1122788899999998877654 3444
Q ss_pred ccC-CCC-CcEEEccCcccCCCcchhhccCCCCccceeeecCCccccccccccccCCCCCCCceeecccchhhcch-h-h
Q 044924 78 YGG-LRK-LKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTTTTQGFPHFKSLEHLEMDDARIALNT-S-F 153 (740)
Q Consensus 78 l~~-l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~-~ 153 (740)
+.. +++ |++|++++|..... .... ....++++|++|++++|.+...+ . +
T Consensus 132 l~~~~~~~L~~L~L~~~~~~~~-~~l~--------------------------~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 132 LAKARADDLETLKLDKCSGFTT-DGLL--------------------------SIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HHHHHGGGCCEEEEESCEEEEH-HHHH--------------------------HHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred HHHhccccCcEEECcCCCCcCH-HHHH--------------------------HHHhhCCCCCEEECccccccCcchhHH
Confidence 544 444 99999988752110 0000 11234566677777766321111 1 2
Q ss_pred hHHhhhcCCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCccc---CCC
Q 044924 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQLT---GSI 230 (740)
Q Consensus 154 ~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~ 230 (740)
...... +++|+.|+++++....-....++..+..+++|++|++++|.+.+ ++..+..+++|+.|+++.+... +..
T Consensus 185 ~~~~~~-~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 185 HELAQH-NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHH-CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHhc-CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHH
Confidence 223333 77777777776622111123344556667788888888877764 5677778888888888753221 111
Q ss_pred CcccccCcCCccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCCCcchh
Q 044924 231 SSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGVTFPKF 310 (740)
Q Consensus 231 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 310 (740)
+. .+..+++|+.|+++++... .....+..+++|+.|++++|.+... .++..
T Consensus 263 ~~-~l~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~Ls~~~l~~~--------------------------~~~~~ 313 (592)
T 3ogk_B 263 YM-NLVFPRKLCRLGLSYMGPN--EMPILFPFAAQIRKLDLLYALLETE--------------------------DHCTL 313 (592)
T ss_dssp SS-CCCCCTTCCEEEETTCCTT--TGGGGGGGGGGCCEEEETTCCCCHH--------------------------HHHHH
T ss_pred HH-HhhccccccccCccccchh--HHHHHHhhcCCCcEEecCCCcCCHH--------------------------HHHHH
Confidence 12 4667778888887765321 1123345666777777776654321 11233
Q ss_pred hccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecC-----------CCCCCCC-CCCCCCCCCccEEEcccCcCCC
Q 044924 311 LYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVN-----------DSLAGPF-RLPIHSHKQLRLLDVSNNNFQG 378 (740)
Q Consensus 311 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~ 378 (740)
+..+++|+.|+++ +.+.+.....++..+++|++|++++ +.+++.. ......+++|+.|+++.+.+++
T Consensus 314 ~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 4567778888777 3333333334456777888888873 2222111 1112346677777776677766
Q ss_pred cCchhHhhhCCCCcEEEcc----CCcCCCC-----CCccccCCCCCcEEeccCcc--cccccchhhhhcCCCCcEEeCCC
Q 044924 379 HIPVEIGDILPSLISFNIS----MNALNGS-----IPSSFGNINSLQILDLSNNQ--LIGEIPEHLAVGCVNLEYLTLSN 447 (740)
Q Consensus 379 ~~~~~~~~~l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~ 447 (740)
..+..+...+++|+.|+++ .+.+++. ++..+.++++|++|++++|. +++.....+...+++|++|++++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 5555555556777777775 3444432 12224456666666665432 33333344444455566666665
Q ss_pred CcccCc-CccccCCCCCCCEEEcccCcCccc-CCccccCCCCCCEEEccCCcCC
Q 044924 448 NNLEGH-MFTRNFNLTNLRWLQLESNHFVGE-IPQSLSKCSSLEGLYLNNNSLS 499 (740)
Q Consensus 448 n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~ 499 (740)
|.+++. .+..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 555432 122233445555555555544322 1222233444444444444443
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5.9e-27 Score=239.67 Aligned_cols=282 Identities=24% Similarity=0.254 Sum_probs=227.5
Q ss_pred CEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCC--CCccccCCCCCcEEec
Q 044924 343 ETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGS--IPSSFGNINSLQILDL 420 (740)
Q Consensus 343 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l 420 (740)
+.++++++.++.... ...++++.|++++|.++ .+|...+..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~---~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCC---CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 567887777665332 23468999999999998 78887766689999999999998733 3567778999999999
Q ss_pred cCcccccccchhhhhcCCCCcEEeCCCCcccCcCc-cccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCC
Q 044924 421 SNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMF-TRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLS 499 (740)
Q Consensus 421 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 499 (740)
++|.+. .+|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999987 577664 469999999999999998765 67889999999999999999888888999999999999999998
Q ss_pred C-CCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcccccccccccc
Q 044924 500 G-KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTF 578 (740)
Q Consensus 500 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 578 (740)
+ ..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++. +...+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------------~~~~~ 219 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL------------------------DTFPY 219 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC------------------------CSGGG
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc------------------------Chhhc
Confidence 6 5788999999999999999999988888999999999999999988733 22236
Q ss_pred ccCCcceEEEccCCcCCCCCCccccCcC-CCcEEEcCCCcCcccCC--ccccCCCCCCEEeCCCCccccCCCCCCCccc
Q 044924 579 FNCSSLVTLDLSYNRLNGSIPNWVDGLS-QLRHLILGHNNLEGEVP--VQLCGLNQLQLLDLSNNNLHGHIPPCFDNTT 654 (740)
Q Consensus 579 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 654 (740)
..+++|++|+|++|.+++..|..+..++ +|++|+|++|++++.-+ ....-+...+.+.+..+.+.+..|+.+.+..
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 7778888888888888888888888874 89999999998874321 1111223445556667777777776665543
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=242.20 Aligned_cols=285 Identities=19% Similarity=0.175 Sum_probs=227.7
Q ss_pred ccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCC
Q 044924 312 YHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSL 391 (740)
Q Consensus 312 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 391 (740)
..++.....+.+++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+. .+++|
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 102 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS-SLGSL 102 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTC
T ss_pred CCCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC-CCCCC
Confidence 34566667888888877 566643 36899999999999987777899999999999999999954444444 48999
Q ss_pred cEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccch-hhhhcCCCCcEEeCCCC-cccCcCccccCCCCCCCEEEc
Q 044924 392 ISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPE-HLAVGCVNLEYLTLSNN-NLEGHMFTRNFNLTNLRWLQL 469 (740)
Q Consensus 392 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 469 (740)
++|++++|.+++..+..|.++++|++|++++|.+. .+|. ..+..+++|++|++++| .+....+..+..+++|++|++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 99999999999665556899999999999999987 6776 55667999999999999 577777788999999999999
Q ss_pred ccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhh---CCCCCcEEEcccCcC
Q 044924 470 ESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFC---QLYSLQLLDISDNNI 546 (740)
Q Consensus 470 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l 546 (740)
++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+. ..+.++.++++++.+
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 99999988899999999999999999998744444455689999999999999876554433 344555566555544
Q ss_pred CCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccC
Q 044924 547 SGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEV 622 (740)
Q Consensus 547 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 622 (740)
. ++.+. .+|.. +..+++|++|+|++|+++...+..|.++++|++|+|++|++.+..
T Consensus 262 ~------------------~~~l~-~l~~~-l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 262 T------------------DESLF-QVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp C------------------HHHHH-HHHHH-HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred c------------------Ccchh-hhHHH-HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 3 22222 34544 888999999999999999554455689999999999999988543
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.2e-26 Score=236.78 Aligned_cols=235 Identities=20% Similarity=0.229 Sum_probs=162.8
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEE
Q 044924 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWL 467 (740)
Q Consensus 388 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 467 (740)
.+.++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 357788888888877 56666777777888888777766 6666553 5677777777777766 456666666777777
Q ss_pred EcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
++++|.+.+.+|..+... ..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 776666665666544320 00112334566666666666665 45555666666666666666666
Q ss_pred CCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCcccc
Q 044924 548 GSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLC 627 (740)
Q Consensus 548 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 627 (740)
+..+....+++|+.|++++|.+.+.+|.. +..+++|++|+|++|.+.+.+|..+.++++|++|+|++|++.+.+|..+.
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 54444334566666666666666666665 78888899999998888888888888889999999999888888899899
Q ss_pred CCCCCCEEeCCCCccc
Q 044924 628 GLNQLQLLDLSNNNLH 643 (740)
Q Consensus 628 ~l~~L~~L~l~~n~~~ 643 (740)
.+++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 9999999988876554
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=4.7e-28 Score=272.40 Aligned_cols=256 Identities=11% Similarity=0.059 Sum_probs=131.8
Q ss_pred CCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCC-ccccCCCCCcEEeccCcccccccchhhhhcC
Q 044924 359 PIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIP-SSFGNINSLQILDLSNNQLIGEIPEHLAVGC 437 (740)
Q Consensus 359 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 437 (740)
.+..+++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+
T Consensus 265 ~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC 341 (592)
T ss_dssp CCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC
T ss_pred HhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC
Confidence 3444555555555554322 3333322 24556666666655443221 224555666666665 222322223333345
Q ss_pred CCCcEEeCCC-----------CcccCcCccc-cCCCCCCCEEEcccCcCcccCCccccC-CCCCCEEEcc----CCcCCC
Q 044924 438 VNLEYLTLSN-----------NNLEGHMFTR-NFNLTNLRWLQLESNHFVGEIPQSLSK-CSSLEGLYLN----NNSLSG 500 (740)
Q Consensus 438 ~~L~~L~l~~-----------n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~----~n~~~~ 500 (740)
++|++|++++ +.++...... ...+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 6666666662 3333221111 223566666666555555444444433 5666666664 334443
Q ss_pred C-----CcccccCCCCCceecccCCc--ccCCCchhhh-CCCCCcEEEcccCcCCCC-CCcc-ccccCccEEecCCcccc
Q 044924 501 K-----IPRWLGNLKGLKHIIMPENH--LEGPIPMEFC-QLYSLQLLDISDNNISGS-LPSC-FHLLSIEQVHLSKNMLR 570 (740)
Q Consensus 501 ~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~-~~~~~L~~L~L~~n~~~ 570 (740)
. ++..+.++++|+.|++++|. +++..+..+. .+++|++|++++|.+++. ++.. ..+++|+.|++++|.++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 2 22234456666666665432 4433333333 366677777777666542 1222 23566777777777665
Q ss_pred ccccccccccCCcceEEEccCCcCCCCCCccc-cCcCCCcEEEcCCCc
Q 044924 571 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWV-DGLSQLRHLILGHNN 617 (740)
Q Consensus 571 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~ 617 (740)
+......+..+++|++|+|++|+++......+ ..++.+....+..++
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred HHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence 43233325677888888888888875544333 456777776666553
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=6.1e-26 Score=229.45 Aligned_cols=257 Identities=22% Similarity=0.197 Sum_probs=144.4
Q ss_pred cEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCC
Q 044924 367 RLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLS 446 (740)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 446 (740)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--------------------- 68 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--------------------- 68 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------------------
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc---------------------
Confidence 34555555554 444432 23555555555555544444455555555555555544
Q ss_pred CCcccCcCccccCCCCCCCEEEcccCc-CcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCC
Q 044924 447 NNNLEGHMFTRNFNLTNLRWLQLESNH-FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGP 525 (740)
Q Consensus 447 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 525 (740)
++..+..+..+++|++|++++|. +....+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+++.
T Consensus 69 ----~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 69 ----ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144 (285)
T ss_dssp ----CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ----ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence 44334444444444444444443 3333344444455555555555555444444455555555555555555544
Q ss_pred CchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccC
Q 044924 526 IPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDG 604 (740)
Q Consensus 526 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 604 (740)
.+..|..+++|++|++++|.+++..+..+. +++|+.|++++|.+.+..+.. |..+++|+.|++++|.+++..+..+..
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHccc
Confidence 444455555555555555555544443333 555555555555555444443 788888999999999998777777888
Q ss_pred cCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCccc
Q 044924 605 LSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTT 654 (740)
Q Consensus 605 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 654 (740)
+++|++|++++|++....+.. .-...++.+..+.+.+.+..|+.+.+..
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~ 272 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD 272 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCB
T ss_pred CcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcC
Confidence 899999999999887432211 1123455556777778777777665533
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.5e-25 Score=230.53 Aligned_cols=234 Identities=17% Similarity=0.193 Sum_probs=173.4
Q ss_pred CCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcE
Q 044924 363 HKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEY 442 (740)
Q Consensus 363 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 442 (740)
.+.++.|++++|.++ .+|..++. +++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+. .+++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCE
Confidence 467999999999998 89988887 899999999999999 88999999999999999999988 8888764 6999999
Q ss_pred EeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcc
Q 044924 443 LTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHL 522 (740)
Q Consensus 443 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 522 (740)
|++++|++.+.+|..+... ..+..|..+++|++|++++|.+. .+|..+.++++|++|++++|.+
T Consensus 155 L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred EECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 9999998888887765430 11223444555555555555554 4455555555555555555555
Q ss_pred cCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCcc
Q 044924 523 EGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNW 601 (740)
Q Consensus 523 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 601 (740)
++ +|..+..+++|++|++++|.+.+.+|..+. +++|+.|++++|.+.+.+|.. +.++++|++|+|++|++.+.+|..
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCCGG
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhccHH
Confidence 53 333455555566666665555555554443 556666666666666667666 888999999999999999999999
Q ss_pred ccCcCCCcEEEcCCCcCc
Q 044924 602 VDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 602 ~~~l~~L~~L~L~~n~l~ 619 (740)
++++++|+.+++..+.+.
T Consensus 297 l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGSCTTCEEECCGGGSC
T ss_pred HhhccCceEEeCCHHHHH
Confidence 999999999999877665
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-27 Score=242.98 Aligned_cols=267 Identities=17% Similarity=0.182 Sum_probs=204.1
Q ss_pred ccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeC
Q 044924 366 LRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTL 445 (740)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 445 (740)
++..+++.+.+. ..+...+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 445566666665 4555566556789999999999987777788899999999999998875444 456889999999
Q ss_pred CCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCC
Q 044924 446 SNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGP 525 (740)
Q Consensus 446 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 525 (740)
++|.+++.. ..++|+.|++++|.+++..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999887543 248899999999988855443 356789999999998877777888889999999999988877
Q ss_pred Cchhhh-CCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccC
Q 044924 526 IPMEFC-QLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDG 604 (740)
Q Consensus 526 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 604 (740)
.+..+. .+++|++|++++|.+++. +....+++|+.|++++|.++ .++.. +..+++|++|+|++|.++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCC-cchhh-hcccCcccEEECcCCccc-chhhHhhc
Confidence 666664 688899999999988755 33334778888888888887 45554 777888888888888887 46667788
Q ss_pred cCCCcEEEcCCCcCc-ccCCccccCCCCCCEEeCCCC-ccccCCCC
Q 044924 605 LSQLRHLILGHNNLE-GEVPVQLCGLNQLQLLDLSNN-NLHGHIPP 648 (740)
Q Consensus 605 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~n-~~~~~~p~ 648 (740)
+++|++|++++|++. +.+|..+..+++|+.+++++| .+.+..|.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 888888888888887 667777888888888888744 45554443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=6.3e-25 Score=236.52 Aligned_cols=248 Identities=27% Similarity=0.251 Sum_probs=197.9
Q ss_pred CCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEec
Q 044924 341 RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDL 420 (740)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 420 (740)
..+.++..+..+... |..+ .++++.|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 456788877776643 2322 378999999999998 444444445899999999999999888889999999999999
Q ss_pred cCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCccc-CCccccCCCCCCEEEccCCcCC
Q 044924 421 SNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGE-IPQSLSKCSSLEGLYLNNNSLS 499 (740)
Q Consensus 421 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~ 499 (740)
++|++. .++...+..+++|++|++++|.+....+..|..+++|+.|++++|...+. .+..|..+++|++|++++|.+.
T Consensus 120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999987 67776667899999999999999988888999999999999999554434 4457899999999999999988
Q ss_pred CCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccc
Q 044924 500 GKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFF 579 (740)
Q Consensus 500 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 579 (740)
.+| .+..+++|+.|++++|.+++..|..|.++++|++|++++|++.+..+ ..|.
T Consensus 199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~ 252 (440)
T 3zyj_A 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER------------------------NAFD 252 (440)
T ss_dssp -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT------------------------TSST
T ss_pred -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh------------------------hhhc
Confidence 444 47788899999999998888778888888888888888888774333 2366
Q ss_pred cCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 580 NCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 580 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
++++|+.|+|++|++++..+..|..+++|++|+|++|++.
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6677777777777777666666667777777777777654
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=7.3e-25 Score=236.89 Aligned_cols=248 Identities=24% Similarity=0.209 Sum_probs=197.9
Q ss_pred CCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEec
Q 044924 341 RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDL 420 (740)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 420 (740)
....++..+..++.. +.. -.++++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~~i-P~~--~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV-PQG--IPSNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCcc-CCC--CCCCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 456777777776643 322 236899999999999954455444 4899999999999999888889999999999999
Q ss_pred cCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccC-CccccCCCCCCEEEccCCcCC
Q 044924 421 SNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEI-PQSLSKCSSLEGLYLNNNSLS 499 (740)
Q Consensus 421 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~ 499 (740)
++|.+. .++...+..+++|++|++++|.+....+..|..+++|+.|++++|...+.+ +..|..+++|++|++++|.+.
T Consensus 131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999987 677776778999999999999999888889999999999999995544344 457889999999999999988
Q ss_pred CCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccc
Q 044924 500 GKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFF 579 (740)
Q Consensus 500 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 579 (740)
+. | .+..+++|+.|++++|.+++..|..|.++++|++|++++|++.+..+. .|.
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------------~~~ 263 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN------------------------AFD 263 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT------------------------TTT
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH------------------------Hhc
Confidence 54 4 477888999999999999888888888888999998888887744333 356
Q ss_pred cCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 580 NCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 580 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
++++|+.|+|++|++++..+..|..+++|++|+|++|++.
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6666777777777776666666666777777777777654
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.4e-27 Score=268.83 Aligned_cols=446 Identities=15% Similarity=0.097 Sum_probs=209.0
Q ss_pred ccCCCCCcEEecCCCcCCc---------------hhhHhhhcCCCCCEEEcCCCcCCCccChhhhc-CCCCCcEEeCCCC
Q 044924 4 LSRLTNLKMLDLRGNLFNN---------------SILSSLAHLSSLTSLDLSENKLEGSINVKEFD-SLSNLEELDMSGN 67 (740)
Q Consensus 4 l~~l~~L~~L~L~~~~~~~---------------~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~-~l~~L~~L~Ls~n 67 (740)
+.++++|++|+++++.... .+......+++|++|+|++|.+.+.... .+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCc
Confidence 3456777777777664211 0123345677777777777776543332 343 5777777777777
Q ss_pred -ccCCCcCCccccCCCCCcEEEccCcccCCCcchhh--ccCCCCccceeeecCCc-cccccccccccCCCCCCCceeecc
Q 044924 68 -EIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLR--SMGSFPSLNTLYLWGNN-FTETMTTTTQGFPHFKSLEHLEMD 143 (740)
Q Consensus 68 -~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~-~~~~~~~~~~~l~~l~~L~~L~l~ 143 (740)
.+++..++..+.++++|++|++++|.+++....+. ....+++|++|++.++. ...... ....+.++++|++|+++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA-LERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH-HHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH-HHHHHHhCCCCcEEecC
Confidence 34332233444467777777777776655333221 12245566666666654 110000 00112335666666666
Q ss_pred cchhhcchhhhHHhhhcCCCceEEeccCCC--CCCCcccchhhhhcCCCCCcEE-eccCCccccCCChhhhcCCCCcEEE
Q 044924 144 DARIALNTSFLQIIGELMPSLKYLSLSYST--PGTNSIEILDQGLCSLMHMQEL-HIAHNDLRGSLPWCLANMTSLRILD 220 (740)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~~~l~~L~~L-~L~~~~l~~~~~~~l~~l~~L~~L~ 220 (740)
+| ...+.++..+.. +++|+.|++..+. ...+.+..++..+..+++|+.| .+.+... +.++..+..+++|++|+
T Consensus 220 ~~--~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~ 295 (594)
T 2p1m_B 220 RA--VPLEKLATLLQR-APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLN 295 (594)
T ss_dssp TT--SCHHHHHHHHHH-CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEE
T ss_pred CC--CcHHHHHHHHhc-CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEE
Confidence 66 222224444444 6666666665441 2223344444556666666666 3332221 23344444566666666
Q ss_pred cCCCcccCCCCcccccCcCCccEEEccCCcccccCCcccc-ccCCccceeeccCCcccccccCCCCCCCccccceeeecc
Q 044924 221 VSSNQLTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPL-FNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSF 299 (740)
Q Consensus 221 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 299 (740)
+++|.+.+......+..+++|++|++++| +.. .....+ ..+++|+.|++.++.-.+. ..
T Consensus 296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~------------------~~ 355 (594)
T 2p1m_B 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPFVM------------------EP 355 (594)
T ss_dssp CTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTTCS------------------SC
T ss_pred ccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCccccc------------------cc
Confidence 66666443222222445666666666665 221 111111 2355566665543210000 00
Q ss_pred ccCCC-CCcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEccc-CcCC
Q 044924 300 GYGDG-VTFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSN-NNFQ 377 (740)
Q Consensus 300 ~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~ 377 (740)
..... ..+......+++|+.|.+..+.+.+..+..+...+++|+.|++..+... + +.++
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~-------------------~~~~l~ 416 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK-------------------APDYLT 416 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT-------------------CCCTTT
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC-------------------Cccccc
Confidence 00000 0111122235666666655555554444444445566666666511100 0 1222
Q ss_pred CcCc-----hhHhhhCCCCcEEEccCCcCCCCCCccccC-CCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCccc
Q 044924 378 GHIP-----VEIGDILPSLISFNISMNALNGSIPSSFGN-INSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLE 451 (740)
Q Consensus 378 ~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 451 (740)
..| ..+...+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.....+..++++|++|++++|.++
T Consensus 417 -~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 417 -LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp -CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred -CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 111 11122345555555544 333222222222 4555555555555543333333334566666666666554
Q ss_pred CcCcc-ccCCCCCCCEEEcccCcCcccCCccc-cCCCCCCEEEccCC
Q 044924 452 GHMFT-RNFNLTNLRWLQLESNHFVGEIPQSL-SKCSSLEGLYLNNN 496 (740)
Q Consensus 452 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n 496 (740)
+.... ....+++|+.|++++|.++......+ ..++.|+...+..+
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 32222 22335566666666665532222222 33455554444433
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.2e-26 Score=237.68 Aligned_cols=248 Identities=21% Similarity=0.219 Sum_probs=137.9
Q ss_pred CCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCC-CCCCcccc-------CCCCCcEEeccCcccccccchhhh
Q 044924 363 HKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALN-GSIPSSFG-------NINSLQILDLSNNQLIGEIPEHLA 434 (740)
Q Consensus 363 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~ 434 (740)
.++|+.+++++|.+ .+|..+... +++|++++|.+. ..+|..+. ++++|++|++++|.+.+.+|..++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34566666666666 556555442 555666666553 22333222 344555555555544444444331
Q ss_pred hcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCC-----CCCCEEEccCCcCCCCCcccccCC
Q 044924 435 VGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKC-----SSLEGLYLNNNSLSGKIPRWLGNL 509 (740)
Q Consensus 435 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l 509 (740)
+..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..|.++
T Consensus 117 -----------------------~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 117 -----------------------EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp -----------------------SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred -----------------------HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 04445555555555555433 4434333 455555555555554444555555
Q ss_pred CCCceecccCCcccCC--Cchhh--hCCCCCcEEEcccCcCCCCCC---ccc-cccCccEEecCCccccccccccccccC
Q 044924 510 KGLKHIIMPENHLEGP--IPMEF--CQLYSLQLLDISDNNISGSLP---SCF-HLLSIEQVHLSKNMLRGQLKRGTFFNC 581 (740)
Q Consensus 510 ~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~~~---~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l 581 (740)
++|++|++++|++.+. .+..+ ..+++|++|++++|++.+... ..+ .+++|+.|++++|.+.+..+...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555554432 12222 455555555555555552111 111 235566666666666554443335667
Q ss_pred CcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 044924 582 SSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 644 (740)
Q Consensus 582 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 644 (740)
++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 78888888888887 5666665 7888888888888854 65 7788888888888888764
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-24 Score=216.45 Aligned_cols=205 Identities=25% Similarity=0.312 Sum_probs=140.3
Q ss_pred CCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEc
Q 044924 414 SLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYL 493 (740)
Q Consensus 414 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 493 (740)
..+++++++++++ .+|..+ .+++++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3455666666554 455433 245666666666666555555666666666666666665444444555666666666
Q ss_pred cCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccc
Q 044924 494 NNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQL 573 (740)
Q Consensus 494 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~ 573 (740)
++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+. .+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------~~ 148 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------------------------SL 148 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------CC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC------------------------cc
Confidence 666665544445555666666666666665555555555666666666555554 34
Q ss_pred cccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCC
Q 044924 574 KRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHI 646 (740)
Q Consensus 574 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 646 (740)
+...|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++.+.+
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 4445788999999999999999888888999999999999999999777777899999999999999998544
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.8e-26 Score=236.29 Aligned_cols=251 Identities=25% Similarity=0.276 Sum_probs=166.6
Q ss_pred hcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCC-CcCchhHh------hhCCCCcEEEccCCcCCCCCCccc
Q 044924 337 ENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQ-GHIPVEIG------DILPSLISFNISMNALNGSIPSSF 409 (740)
Q Consensus 337 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~ 409 (740)
+..++|+.++++++.+ .++..+... ++.|++++|.+. ..+|.... ..+++|++|++++|.+++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4567888899999988 344333322 889999999984 45666554 127899999999999998888876
Q ss_pred --cCCCCCcEEeccCcccccccchhhhhcC-----CCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCccc--CCc
Q 044924 410 --GNINSLQILDLSNNQLIGEIPEHLAVGC-----VNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGE--IPQ 480 (740)
Q Consensus 410 --~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~ 480 (740)
..+++|++|++++|.+.+. |..+. .+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 8999999999999998865 65443 33 6777777777777666666666666666666666665433 122
Q ss_pred cc--cCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCC--ccccc
Q 044924 481 SL--SKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLP--SCFHL 556 (740)
Q Consensus 481 ~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 556 (740)
.+ ..+++|++|++++|.+.+. + ......+..+++|++|++++|++.+..| ....+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~-~--------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETP-S--------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCH-H--------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred HHHhccCCCCCEEECCCCcCcch-H--------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 22 4455555555555554411 0 1111223345555555555555555442 12224
Q ss_pred cCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcc
Q 044924 557 LSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG 620 (740)
Q Consensus 557 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 620 (740)
++|+.|++++|.++ .+|.. +. ++|++|+|++|++++. |. +..+++|++|+|++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~-~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKG-LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSS-CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhh-cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 56666666666665 56655 33 7889999999998865 55 8888999999999998874
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4e-27 Score=265.07 Aligned_cols=451 Identities=16% Similarity=0.127 Sum_probs=208.4
Q ss_pred cEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccC--------------hhhhcCCCCCcEEeCCCCccCCCcCCc
Q 044924 11 KMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSIN--------------VKEFDSLSNLEELDMSGNEIDNFQVPQ 76 (740)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~--------------~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 76 (740)
+.++++.+... .....+.++++|++|++++|.....+. ...+..+++|++|++++|.+++. .+.
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~ 123 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-CLE 123 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-HHH
Confidence 45666655433 334567788899999998876322211 11234677888888888876654 333
Q ss_pred ccc-CCCCCcEEEccCc-ccCCCcchhhccCCCCccceeeecCCcccccccc-ccccCCCCCCCceeecccchhhcchhh
Q 044924 77 GYG-GLRKLKSLHLSRV-GIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTT-TTQGFPHFKSLEHLEMDDARIALNTSF 153 (740)
Q Consensus 77 ~l~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 153 (740)
.+. .+++|++|++++| .++.. ........+++|++|++.+|........ .......+++|++|++++|........
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFSTD-GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEHH-HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred HHHHhCCCCcEEeCCCcCCCCHH-HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 343 5778888888777 33321 1111112466677777766653322111 111223556666666666531111111
Q ss_pred hHHhhhcCCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccCCc-------cccCCChhhhcCCCCcEE-EcCCCc
Q 044924 154 LQIIGELMPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAHND-------LRGSLPWCLANMTSLRIL-DVSSNQ 225 (740)
Q Consensus 154 ~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~~~-------l~~~~~~~l~~l~~L~~L-~L~~n~ 225 (740)
...+...+++|+.|++++| ..+..++..+..+++|++|++..+. +.+ ++..+.++++|+.| .+.+..
T Consensus 203 l~~l~~~~~~L~~L~L~~~----~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~ 277 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRA----VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV 277 (594)
T ss_dssp HHHHHHHCTTCCEEECCTT----SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC
T ss_pred HHHHHHhCCCCcEEecCCC----CcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccc
Confidence 2222111556666666554 1122233445555555555544332 111 22234445555554 222211
Q ss_pred ccCCCCcccccCcCCccEEEccCCcccccCCccccccCCccceeeccCCcccccccCCCCCCCccccceeeeccccCCCC
Q 044924 226 LTGSISSSPLIHLTSIEELRLSDNHFRIPISLEPLFNHSRLQIFDAYNNEINAEITQSPSLTPNFQLSHLSLSFGYGDGV 305 (740)
Q Consensus 226 l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 305 (740)
. +.++. .+..+++|++|++++|.+...
T Consensus 278 ~-~~l~~-~~~~~~~L~~L~L~~~~l~~~--------------------------------------------------- 304 (594)
T 2p1m_B 278 P-AYLPA-VYSVCSRLTTLNLSYATVQSY--------------------------------------------------- 304 (594)
T ss_dssp G-GGGGG-GHHHHTTCCEEECTTCCCCHH---------------------------------------------------
T ss_pred h-hhHHH-HHHhhCCCCEEEccCCCCCHH---------------------------------------------------
Confidence 1 11111 222344455555544443211
Q ss_pred CcchhhccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCC---------CCCCCCCCC-CCCCCccEEEcccCc
Q 044924 306 TFPKFLYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDS---------LAGPFRLPI-HSHKQLRLLDVSNNN 375 (740)
Q Consensus 306 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------~~~~~~~~~-~~~~~L~~L~l~~~~ 375 (740)
.+...+..+++|+.|++++| +.......+...+++|++|++.++. +++.....+ ..+++|+.|.+..+.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 11223345566666666665 3222222333456777777764432 111000001 124555555555555
Q ss_pred CCCcCchhHhhhCCCCcEEEcc--C----CcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCc
Q 044924 376 FQGHIPVEIGDILPSLISFNIS--M----NALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNN 449 (740)
Q Consensus 376 ~~~~~~~~~~~~l~~L~~L~l~--~----n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 449 (740)
+++..+..+...+++|+.|+++ + +.+++...+. .++ .+...+++|++|++++ .
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-------------------~~~-~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-------------------GFG-AIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH-------------------HHH-HHHHHCTTCCEEECCS-S
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh-------------------HHH-HHHhhCCCccEEeecC-c
Confidence 5544444444345566666665 2 2222100000 000 1122345555555544 3
Q ss_pred ccCcCccccCC-CCCCCEEEcccCcCcccCCccc-cCCCCCCEEEccCCcCCCCCcc-cccCCCCCceecccCCcccCCC
Q 044924 450 LEGHMFTRNFN-LTNLRWLQLESNHFVGEIPQSL-SKCSSLEGLYLNNNSLSGKIPR-WLGNLKGLKHIIMPENHLEGPI 526 (740)
Q Consensus 450 l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 526 (740)
++......+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|.++...
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 33322222222 4555555555555543322222 3456666666666665332222 2334566666666666654333
Q ss_pred chhh-hCCCCCcEEEcccC
Q 044924 527 PMEF-CQLYSLQLLDISDN 544 (740)
Q Consensus 527 ~~~~-~~l~~L~~L~l~~n 544 (740)
...+ ..+++|+...+..+
T Consensus 523 ~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 523 CKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHhCCCCEEEEecCC
Confidence 3333 34566665555544
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2e-24 Score=217.84 Aligned_cols=204 Identities=23% Similarity=0.230 Sum_probs=149.3
Q ss_pred ccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCC
Q 044924 409 FGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSL 488 (740)
Q Consensus 409 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 488 (740)
+.+++++++++++++++. .+|..+ .+++++|++++|.+++..+..+..+++|+.|++++|.+++..+ .+.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 455666777777777665 556543 2566777777777766666666677777777777777663322 2566677
Q ss_pred CEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcc
Q 044924 489 EGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNM 568 (740)
Q Consensus 489 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 568 (740)
++|++++|.+. .+|..+.++++|++|++++|++++..+..|.++++|++|++++|+++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--------------------- 137 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK--------------------- 137 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC---------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC---------------------
Confidence 77777777666 45556666667777777777766555566666666666666666655
Q ss_pred ccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 044924 569 LRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 644 (740)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 644 (740)
.++...|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.+++++|++.+
T Consensus 138 ---~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 138 ---TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ---CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ---ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 344445778899999999999999777778899999999999999999 888888889999999999999983
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.7e-25 Score=241.28 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=152.2
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEc
Q 044924 390 SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQL 469 (740)
Q Consensus 390 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 469 (740)
+|++|++++|.+++..|..|..+++|++|++++|.+.+..| +..+++|++|++++|.+++..+ .++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 78888888888887777778888888888888888775444 4467788888888887775432 267777777
Q ss_pred ccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhh-CCCCCcEEEcccCcCCC
Q 044924 470 ESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFC-QLYSLQLLDISDNNISG 548 (740)
Q Consensus 470 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~ 548 (740)
++|.+.+..+. .+++|+.|++++|.+.+..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 77777754433 345677777777777766666777777777777777777766666665 67777777777777765
Q ss_pred CCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc-ccCCcccc
Q 044924 549 SLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE-GEVPVQLC 627 (740)
Q Consensus 549 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~ 627 (740)
..+ ...+++|+.|+|++|.+++ +++. +..+++|+.|+|++|.+++ +|..+..+++|++|++++|++. +.+|..+.
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc-cccCCCCCEEECCCCCCCC-CCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 422 2235555555555555553 3333 5555555666666555553 4444555555555666555555 44455555
Q ss_pred CCCCCCEEeCC
Q 044924 628 GLNQLQLLDLS 638 (740)
Q Consensus 628 ~l~~L~~L~l~ 638 (740)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555555554
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.3e-23 Score=232.34 Aligned_cols=266 Identities=24% Similarity=0.267 Sum_probs=170.7
Q ss_pred CCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEec
Q 044924 341 RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDL 420 (740)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 420 (740)
.++.|+++++.++.. +..+. ++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 455555555555522 22222 55666666666665 4554 2456666666666665 3343 4566667777
Q ss_pred cCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCC
Q 044924 421 SNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSG 500 (740)
Q Consensus 421 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 500 (740)
++|.+. .+|. .+++|++|++++|.++.. |. .+++|++|++++|.+++ +|. .+++|+.|++++|.+.+
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 666655 3444 356677777777766652 22 23667777777776663 333 23467777777777764
Q ss_pred CCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcccccccccccccc
Q 044924 501 KIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFN 580 (740)
Q Consensus 501 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 580 (740)
+| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++.... .+++|+.|++++|.+++ +| ..
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~-lp----~~ 239 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LP----VL 239 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-CC----CC
T ss_pred -Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCc-CC----CC
Confidence 34 345677777777777764 332 24677777777777764332 13677788888877774 44 34
Q ss_pred CCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCc
Q 044924 581 CSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDN 652 (740)
Q Consensus 581 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 652 (740)
+++|+.|+|++|.++ .+|. .+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..|..+..
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 577888888888888 4554 5678888888888888 77888888888888888888888777665544
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.3e-23 Score=211.32 Aligned_cols=225 Identities=25% Similarity=0.226 Sum_probs=147.0
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCc
Q 044924 394 FNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNH 473 (740)
Q Consensus 394 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 473 (740)
++..+..++ .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444444 3444332 45677777777665 3443333456666777776666666555566666666666666666
Q ss_pred CcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCC-CchhhhCCCCCcEEEcccCcCCCCCCc
Q 044924 474 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGP-IPMEFCQLYSLQLLDISDNNISGSLPS 552 (740)
Q Consensus 474 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 552 (740)
+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~--- 164 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--- 164 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE---
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC---
Confidence 6655555666666666666666666655554566666666666666666542 355666666666666666655532
Q ss_pred cccccCccEEecCCccccccccccccccCCcce----EEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccC
Q 044924 553 CFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLV----TLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCG 628 (740)
Q Consensus 553 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 628 (740)
+...+..+++|+ .|++++|.+++..+..+.. .+|++|++++|++++..+..|..
T Consensus 165 ---------------------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 165 ---------------------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp ---------------------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred ---------------------CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence 222244444454 8999999999766665554 58999999999999776777899
Q ss_pred CCCCCEEeCCCCccccCCC
Q 044924 629 LNQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 629 l~~L~~L~l~~n~~~~~~p 647 (740)
+++|++|++++|++.+.+|
T Consensus 223 l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSCCEEECCSSCBCCCTT
T ss_pred cccccEEEccCCcccccCC
Confidence 9999999999999986554
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=5.3e-23 Score=227.47 Aligned_cols=269 Identities=24% Similarity=0.296 Sum_probs=222.3
Q ss_pred CCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEE
Q 044924 315 HDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISF 394 (740)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 394 (740)
.+++.++++++.+. .+|..+. ++|+.|++++|.+..... .+++|+.|++++|.++ .+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 46899999999987 6776543 789999999999886433 5789999999999998 6776 37899999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcC
Q 044924 395 NISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF 474 (740)
Q Consensus 395 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 474 (740)
++++|.+++ +|. .+++|+.|++++|++. .+|. .+++|++|++++|.+++. +. .+++|+.|++++|.+
T Consensus 107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC
T ss_pred ECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCC
Confidence 999999985 444 5689999999999987 5665 358999999999999864 32 357899999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccc
Q 044924 475 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF 554 (740)
Q Consensus 475 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 554 (740)
++ +| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++. +|. .+++|++|++++|.+++. | .
T Consensus 174 ~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p--~ 238 (622)
T 3g06_A 174 TS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P--V 238 (622)
T ss_dssp SC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C--C
T ss_pred CC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C--C
Confidence 84 55 456899999999999985 443 34899999999999984 443 357899999999999864 3 3
Q ss_pred cccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCC
Q 044924 555 HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLN 630 (740)
Q Consensus 555 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 630 (740)
.+++|+.|++++|.++ .+|. .+++|+.|+|++|.++ .+|..+.++++|+.|+|++|++++..|..+..++
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 4689999999999998 5665 5689999999999999 7788899999999999999999988887665443
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2e-24 Score=221.63 Aligned_cols=242 Identities=24% Similarity=0.193 Sum_probs=200.8
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcc
Q 044924 391 LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLE 470 (740)
Q Consensus 391 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 470 (740)
++..+++.+.+.......+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 4455666666654444556677899999999999885 454445689999999999999987654 8899999999999
Q ss_pred cCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCC
Q 044924 471 SNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL 550 (740)
Q Consensus 471 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 550 (740)
+|.+++. + ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998843 2 347999999999999865443 4688999999999999888888999999999999999999877
Q ss_pred Cccc--cccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccC
Q 044924 551 PSCF--HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCG 628 (740)
Q Consensus 551 ~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 628 (740)
+..+ .+++|+.|++++|.+++. +. ...+++|++|+|++|.+++. |..+..+++|++|+|++|+++ .+|..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 6655 379999999999999854 43 34589999999999999954 555999999999999999999 67888999
Q ss_pred CCCCCEEeCCCCccc-cCCCC
Q 044924 629 LNQLQLLDLSNNNLH-GHIPP 648 (740)
Q Consensus 629 l~~L~~L~l~~n~~~-~~~p~ 648 (740)
+++|+.|++++|++. +.+|.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHH
Confidence 999999999999998 33433
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.1e-22 Score=204.33 Aligned_cols=221 Identities=23% Similarity=0.270 Sum_probs=173.8
Q ss_pred EEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCC
Q 044924 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNN 448 (740)
Q Consensus 369 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 448 (740)
.+..+..+. .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 344444454 566543 246888888888888776668888899999999999877 555555567889999999999
Q ss_pred cccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCC-CcccccCCCCCceecccCCcccCCCc
Q 044924 449 NLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLKGLKHIIMPENHLEGPIP 527 (740)
Q Consensus 449 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 527 (740)
.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+.++++|++|++++|.+++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 99888888889999999999999999876666789999999999999999864 58899999999999999999998777
Q ss_pred hhhhCCCCCc----EEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCcccc
Q 044924 528 MEFCQLYSLQ----LLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVD 603 (740)
Q Consensus 528 ~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 603 (740)
..+..+++|+ +|++++|.+.+.. ...+. ..+|+.|+|++|.+++..+..|.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~------------------------~~~~~-~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQ------------------------PGAFK-EIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEEC------------------------TTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccC------------------------ccccC-CCcccEEECCCCceeecCHhHhc
Confidence 7777666666 7777777766332 22122 34688888888888877667778
Q ss_pred CcCCCcEEEcCCCcCc
Q 044924 604 GLSQLRHLILGHNNLE 619 (740)
Q Consensus 604 ~l~~L~~L~L~~n~l~ 619 (740)
.+++|++|+|++|++.
T Consensus 222 ~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCCSCCEEECCSSCBC
T ss_pred ccccccEEEccCCccc
Confidence 8888888888888887
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-23 Score=226.91 Aligned_cols=225 Identities=26% Similarity=0.221 Sum_probs=192.1
Q ss_pred CCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCE
Q 044924 411 NINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEG 490 (740)
Q Consensus 411 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 490 (740)
.+++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 456899999999998854444 44679999999999999987665 889999999999999998433 2379999
Q ss_pred EEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccc--cccCccEEecCCcc
Q 044924 491 LYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCF--HLLSIEQVHLSKNM 568 (740)
Q Consensus 491 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~ 568 (740)
|++++|.+.+..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+ .+++|+.|+|++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999866554 46899999999999998888899999999999999999998777765 38999999999999
Q ss_pred ccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccc-cCCC
Q 044924 569 LRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLH-GHIP 647 (740)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~-~~~p 647 (740)
+++. +. +..+++|+.|+|++|.+++.+| .+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++. +.+|
T Consensus 181 l~~~-~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 181 IYDV-KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCEE-EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cccc-cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9865 33 4468999999999999996555 5999999999999999999 57888999999999999999998 3444
Q ss_pred CCCC
Q 044924 648 PCFD 651 (740)
Q Consensus 648 ~~~~ 651 (740)
..+.
T Consensus 256 ~~~~ 259 (487)
T 3oja_A 256 DFFS 259 (487)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4333
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2e-22 Score=201.66 Aligned_cols=208 Identities=24% Similarity=0.282 Sum_probs=124.4
Q ss_pred CCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCE
Q 044924 411 NINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEG 490 (740)
Q Consensus 411 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 490 (740)
.+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3445555555555433 2222 12345555555555544432 23444455555555555554444444445555555
Q ss_pred EEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcccc
Q 044924 491 LYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLR 570 (740)
Q Consensus 491 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~ 570 (740)
|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------------------- 170 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ----------------------- 170 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-----------------------
Confidence 555555554444444445555555555555554444444444555555555555444
Q ss_pred ccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCC
Q 044924 571 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCF 650 (740)
Q Consensus 571 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~ 650 (740)
.++...|..+++|++|++++|.+++..|..+..+++|++|++++|++. +.+++|+.++++.|.++|.+|..+
T Consensus 171 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 171 -SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred -ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 333444778889999999999999888888889999999999999876 345678999999999999999887
Q ss_pred Cccc
Q 044924 651 DNTT 654 (740)
Q Consensus 651 ~~~~ 654 (740)
....
T Consensus 243 ~~~~ 246 (272)
T 3rfs_A 243 GSVA 246 (272)
T ss_dssp SCBC
T ss_pred cccC
Confidence 7644
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.2e-21 Score=195.89 Aligned_cols=201 Identities=26% Similarity=0.286 Sum_probs=127.6
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcc
Q 044924 391 LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLE 470 (740)
Q Consensus 391 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 470 (740)
.+.++++++.++ .+|..+. +++++|++++|.+. .++...+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 344444444444 2333222 34555555555544 3333333345555555555555554444445556666666666
Q ss_pred cCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCC
Q 044924 471 SNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL 550 (740)
Q Consensus 471 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 550 (740)
+|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-- 171 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-- 171 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--
Confidence 666664445556667777777777777776666667777788888888887776666667778888888888887763
Q ss_pred CccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 551 PSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 551 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
++...|..+++|++|+|++|.+++..+..|..+++|++|+|++|++.
T Consensus 172 ----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 ----------------------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ----------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----------------------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 33333666777888888888887666667777888888888888775
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=5.7e-22 Score=195.95 Aligned_cols=158 Identities=24% Similarity=0.276 Sum_probs=105.4
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecC
Q 044924 487 SLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLS 565 (740)
Q Consensus 487 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~ 565 (740)
.++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+. +++|+.|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 444444444444444444444444444444444444444444444444455555555544444443332 4455555555
Q ss_pred CccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccC
Q 044924 566 KNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGH 645 (740)
Q Consensus 566 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 645 (740)
+|.++ .++...|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+.
T Consensus 116 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55554 44555578899999999999999988887899999999999999999988888899999999999999999854
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.7e-21 Score=194.89 Aligned_cols=208 Identities=22% Similarity=0.183 Sum_probs=165.8
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEE
Q 044924 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWL 467 (740)
Q Consensus 388 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 467 (740)
+++|+.|++.+|.++. + ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 5688888888888763 2 357788889999999888764 43 23468899999999999988887788889999999
Q ss_pred EcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999998777777889999999999999998777777889999999999999999877777889999999999999887
Q ss_pred CCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCcccc
Q 044924 548 GSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLC 627 (740)
Q Consensus 548 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 627 (740)
+..+. .+..+++|++|++++|++.+ .+++|+.|+++.|.++|.+|..++
T Consensus 195 ~~~~~------------------------~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 195 SVPDG------------------------VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTT------------------------TTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHH------------------------HHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 44332 25666777777777777653 245677777778888777777766
Q ss_pred CCCC
Q 044924 628 GLNQ 631 (740)
Q Consensus 628 ~l~~ 631 (740)
.++.
T Consensus 244 ~~~~ 247 (272)
T 3rfs_A 244 SVAP 247 (272)
T ss_dssp CBCG
T ss_pred ccCC
Confidence 5543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=7.5e-21 Score=191.64 Aligned_cols=200 Identities=24% Similarity=0.234 Sum_probs=136.7
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEE
Q 044924 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWL 467 (740)
Q Consensus 388 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 467 (740)
++++++++++++.++ .+|..+. +.++.|++++|.+.+ ++...+..+++|++|++++|.+++..+. ..+++|++|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 344555555555554 2333322 455556666655542 3323334556666666666665543322 466777777
Q ss_pred EcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
++++|.+. .+|..+..+++|++|++++|++.+..+..|.++++|++|++++|++++..+..|..+++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 77777776 56667778888888888888888776778888888888888888888777777888888888888888877
Q ss_pred CCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 548 GSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 548 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
.++...|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++.
T Consensus 162 ------------------------~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ------------------------ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ------------------------CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ------------------------ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 344444667777888888888887 56666666778888888888775
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.5e-21 Score=189.89 Aligned_cols=196 Identities=21% Similarity=0.225 Sum_probs=125.6
Q ss_pred CCcEEeCCCCcccCcCccccCCCCCCCEEEcccCc-CcccCCccccCCCCCCEEEccC-CcCCCCCcccccCCCCCceec
Q 044924 439 NLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNH-FVGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLKGLKHII 516 (740)
Q Consensus 439 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 516 (740)
++++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+.+..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555555555556666666666664 5444444556666666666665 555544445566666666666
Q ss_pred ccCCcccCCCchhhhCCCCCc---EEEcccC-cCCCCCCcccc-ccCcc-EEecCCccccccccccccccCCcceEEEcc
Q 044924 517 MPENHLEGPIPMEFCQLYSLQ---LLDISDN-NISGSLPSCFH-LLSIE-QVHLSKNMLRGQLKRGTFFNCSSLVTLDLS 590 (740)
Q Consensus 517 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~-~~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 590 (740)
+++|.+++ +|. |..+++|+ +|++++| .+.+..+..+. +++|+ .|++++|.++ .++...|.. ++|+.|+|+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 66666654 333 55566665 6666666 66655554444 56666 6666666666 566654655 788888888
Q ss_pred CCc-CCCCCCccccCc-CCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCc
Q 044924 591 YNR-LNGSIPNWVDGL-SQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNN 641 (740)
Q Consensus 591 ~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 641 (740)
+|+ +++..+..|.++ ++|++|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 884 887677788888 88888888888888 45544 57788888887763
No 83
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=5e-21 Score=184.48 Aligned_cols=188 Identities=23% Similarity=0.257 Sum_probs=142.1
Q ss_pred CEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccC
Q 044924 465 RWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544 (740)
Q Consensus 465 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 544 (740)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|+.|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45556666655 4444333 46777777777776555556667777777777777776666667777777777777777
Q ss_pred cCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCc
Q 044924 545 NISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624 (740)
Q Consensus 545 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 624 (740)
.++ .++...|.++++|++|+|++|.+++..|..|..+++|++|+|++|++++..+.
T Consensus 91 ~l~------------------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 91 KIT------------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCC------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCC------------------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 665 45555578899999999999999988899999999999999999999988888
Q ss_pred cccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 625 QLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 625 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
.|..+++|++|++++|++. |+|.+.++..|+.... .....++|.+|..+.|..+.
T Consensus 147 ~~~~l~~L~~L~L~~N~~~-----------------c~c~l~~l~~~l~~~~----~~~~~~~C~~P~~l~g~~l~ 201 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFI-----------------CDCHLKWLADYLHTNP----IETSGARCTSPRRLANKRIG 201 (220)
T ss_dssp TTTTCTTCCEEECCSSCEE-----------------CSGGGHHHHHHHHHCC----CBCSCCBEEESGGGTTCBGG
T ss_pred HHhCCCCCCEEEeCCCCcC-----------------CCCccHHHHHHHHhCC----CCccCCCcCCchHHcCCchh
Confidence 8999999999999999997 6677777766654322 12245789999999998876
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.8e-22 Score=211.25 Aligned_cols=256 Identities=21% Similarity=0.221 Sum_probs=145.6
Q ss_pred EEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCC----ccccCCC-CCcEEeccCcccccccchhhhhc----CCC
Q 044924 369 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIP----SSFGNIN-SLQILDLSNNQLIGEIPEHLAVG----CVN 439 (740)
Q Consensus 369 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~----~~~ 439 (740)
++++++.+++.+|..... .++|++|++++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+... .++
T Consensus 3 ~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 567777777655554432 4457778887777775554 5566676 77777777777765444443321 266
Q ss_pred CcEEeCCCCcccCcCccccC----CC-CCCCEEEcccCcCcccCCccc----cC-CCCCCEEEccCCcCCCCCc----cc
Q 044924 440 LEYLTLSNNNLEGHMFTRNF----NL-TNLRWLQLESNHFVGEIPQSL----SK-CSSLEGLYLNNNSLSGKIP----RW 505 (740)
Q Consensus 440 L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~----~~ 505 (740)
|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 77777777776655444322 23 566666666666654433322 22 2456666666666553222 22
Q ss_pred ccCCC-CCceecccCCcccCCCchhhh----CC-CCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccc
Q 044924 506 LGNLK-GLKHIIMPENHLEGPIPMEFC----QL-YSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFF 579 (740)
Q Consensus 506 ~~~l~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 579 (740)
+..++ +|++|++++|.+++..+..+. .+ ++|++|++++|.+.+.... .++.. +.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------------------~l~~~-l~ 221 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA-------------------ELAYI-FS 221 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-------------------HHHHH-HH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH-------------------HHHHH-Hh
Confidence 23333 555566655555544443222 23 3555555555554421110 12222 33
Q ss_pred c-CCcceEEEccCCcCCCCCC----ccccCcCCCcEEEcCCCcCccc-------CCccccCCCCCCEEeCCCCccccC
Q 044924 580 N-CSSLVTLDLSYNRLNGSIP----NWVDGLSQLRHLILGHNNLEGE-------VPVQLCGLNQLQLLDLSNNNLHGH 645 (740)
Q Consensus 580 ~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~l~~n~~~~~ 645 (740)
. .++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 3577777777777775443 3345667778888877774322 334566777788888888877654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.5e-21 Score=187.44 Aligned_cols=198 Identities=19% Similarity=0.223 Sum_probs=117.4
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEc
Q 044924 390 SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQL 469 (740)
Q Consensus 390 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 469 (740)
++++|++++|.+++..+..|.++++|++|++++|+. ++...+..|..+++|++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~------------------------l~~i~~~~f~~l~~L~~L~l 87 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT------------------------LQQLESHSFYNLSKVTHIEI 87 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS------------------------CCEECTTTEESCTTCCEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC------------------------cceeCHhHcCCCcCCcEEEC
Confidence 555666666555544444555555555555555541 33333334444445555555
Q ss_pred cc-CcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCc---eecccCC-cccCCCchhhhCCCCCc-EEEccc
Q 044924 470 ES-NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLK---HIIMPEN-HLEGPIPMEFCQLYSLQ-LLDISD 543 (740)
Q Consensus 470 ~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~ 543 (740)
++ |.+++..+..|..+++|++|++++|.+.+ +|. |..+++|+ +|++++| .+++..+..|.++++|+ +|++++
T Consensus 88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 44 44443333445555555555555555543 333 45555555 6666666 55554555566666666 666666
Q ss_pred CcCCCCCCccccccCccEEecCCcc-ccccccccccccC-CcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCc
Q 044924 544 NNISGSLPSCFHLLSIEQVHLSKNM-LRGQLKRGTFFNC-SSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNN 617 (740)
Q Consensus 544 n~l~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 617 (740)
|++....+..+...+|+.|++++|+ ++ .++...|.++ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 166 n~l~~i~~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 166 NGFTSVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCcccCHhhcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 6666444445555667777777774 55 5555558888 9999999999999854443 56889999998874
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=197.91 Aligned_cols=201 Identities=20% Similarity=0.196 Sum_probs=113.5
Q ss_pred CCCcEEeCCCCcccCcCcccc--CCCCCCCEEEcccCcCcccCC----ccccCCCCCCEEEccCCcCCCCCcccccCCCC
Q 044924 438 VNLEYLTLSNNNLEGHMFTRN--FNLTNLRWLQLESNHFVGEIP----QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKG 511 (740)
Q Consensus 438 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 511 (740)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..|.++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555554444444 445555555555555543322 12234455555555555555444455555555
Q ss_pred CceecccCCcccCC--C--chhhhCCCCCcEEEcccCcCCCCCCc---cc-cccCccEEecCCccccccccccccccC--
Q 044924 512 LKHIIMPENHLEGP--I--PMEFCQLYSLQLLDISDNNISGSLPS---CF-HLLSIEQVHLSKNMLRGQLKRGTFFNC-- 581 (740)
Q Consensus 512 L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~---~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l-- 581 (740)
|++|++++|++.+. + +..+..+++|++|++++|+++...+. .+ .+++|+.|++++|.+.+..|.. +..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccC
Confidence 55555555554321 1 11223455555555555555422111 11 2455555555555555444433 4444
Q ss_pred -CcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 044924 582 -SSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 644 (740)
Q Consensus 582 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 644 (740)
++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 68888999988888 5666664 7899999999998843 44 6778899999999998863
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.5e-22 Score=208.40 Aligned_cols=254 Identities=20% Similarity=0.237 Sum_probs=174.4
Q ss_pred CccEEEcccCcCCCcCchhHhhhC--CCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccc-cchhhhhcCCCCc
Q 044924 365 QLRLLDVSNNNFQGHIPVEIGDIL--PSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGE-IPEHLAVGCVNLE 441 (740)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~ 441 (740)
.++.++++++.+. +..+.. + ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++.. +..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCS
T ss_pred hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCC
Confidence 3788999998876 233332 3 7899999999998876555 55789999999999987654 4444 45688888
Q ss_pred EEeCCCCcccCcCccccCCCCCCCEEEcccC-cCccc-CCccccCCCCCCEEEccCC-cCCCC-CcccccCCC-CCceec
Q 044924 442 YLTLSNNNLEGHMFTRNFNLTNLRWLQLESN-HFVGE-IPQSLSKCSSLEGLYLNNN-SLSGK-IPRWLGNLK-GLKHII 516 (740)
Q Consensus 442 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~ 516 (740)
+|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888888887767777777888888888888 45532 4555667777888888777 66543 455566677 777777
Q ss_pred ccCC--ccc-CCCchhhhCCCCCcEEEcccCc-CCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCC
Q 044924 517 MPEN--HLE-GPIPMEFCQLYSLQLLDISDNN-ISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYN 592 (740)
Q Consensus 517 l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 592 (740)
+++| .++ +.++..+..+++|++|++++|. ++ +..+.. +..+++|++|++++|
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-----------------------~~~~~~-l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----------------------NDCFQE-FFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----------------------GGGGGG-GGGCTTCCEEECTTC
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-----------------------HHHHHH-HhCCCCCCEeeCCCC
Confidence 7777 333 3445556666777777776665 33 222332 667788888888888
Q ss_pred c-CCCCCCccccCcCCCcEEEcCCCcCcccCCccccCC-CCCCEEeCCCCccccCCCCCCCc
Q 044924 593 R-LNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGL-NQLQLLDLSNNNLHGHIPPCFDN 652 (740)
Q Consensus 593 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~ 652 (740)
. +.......+.++++|++|++++| +.. ..+..+ .+++.|++++|.+++..|..+..
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 5 32222235777888888888888 332 233333 34667778888888888877665
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=8.8e-23 Score=215.90 Aligned_cols=240 Identities=23% Similarity=0.268 Sum_probs=141.2
Q ss_pred CCCCcEEEccCCcCCCCC----CccccCCCCCcEEeccCcc---cccccchhhhhcCCCCcEEeCCCCcccCcCccccCC
Q 044924 388 LPSLISFNISMNALNGSI----PSSFGNINSLQILDLSNNQ---LIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFN 460 (740)
Q Consensus 388 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 460 (740)
+++|++|++++|.+++.. +..+..+++|++|++++|. +.+.+|..+.. +...+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~------------------l~~~l~~ 92 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------LLQALLK 92 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------HHHHHTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH------------------HHHHHhh
Confidence 456666666666665432 2235556666666666642 23333433310 0011234
Q ss_pred CCCCCEEEcccCcCcc----cCCccccCCCCCCEEEccCCcCCCCCccccc----CC---------CCCceecccCCccc
Q 044924 461 LTNLRWLQLESNHFVG----EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG----NL---------KGLKHIIMPENHLE 523 (740)
Q Consensus 461 l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~l---------~~L~~L~l~~n~l~ 523 (740)
+++|++|++++|.+.. .++..+..+++|++|++++|.+....+..+. .+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 4444444444444443 2334444555555555555555322222222 22 56666666666654
Q ss_pred -CCCc---hhhhCCCCCcEEEcccCcCCC-----CCC-ccccccCccEEecCCcccc----ccccccccccCCcceEEEc
Q 044924 524 -GPIP---MEFCQLYSLQLLDISDNNISG-----SLP-SCFHLLSIEQVHLSKNMLR----GQLKRGTFFNCSSLVTLDL 589 (740)
Q Consensus 524 -~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~-~~~~~~~L~~L~L~~n~~~----~~~~~~~~~~l~~L~~L~L 589 (740)
..++ ..+..+++|++|++++|.+.. ..+ ....+++|+.|+|++|.++ ..++.. +..+++|++|+|
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L 251 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGL 251 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEEC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEEC
Confidence 2233 345556666666666666652 222 2223566777777777664 345554 788899999999
Q ss_pred cCCcCCCC----CCcccc--CcCCCcEEEcCCCcCcc----cCCccc-cCCCCCCEEeCCCCccccCC
Q 044924 590 SYNRLNGS----IPNWVD--GLSQLRHLILGHNNLEG----EVPVQL-CGLNQLQLLDLSNNNLHGHI 646 (740)
Q Consensus 590 ~~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~l~~n~~~~~~ 646 (740)
++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ ..+++|++|++++|++++..
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999865 456663 38999999999999996 477777 56899999999999998554
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=5.1e-22 Score=207.77 Aligned_cols=208 Identities=21% Similarity=0.177 Sum_probs=160.2
Q ss_pred EEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCch---hHhhhCC-CCcEEEccCCcCCCCCCccccCC-----CC
Q 044924 344 TLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPV---EIGDILP-SLISFNISMNALNGSIPSSFGNI-----NS 414 (740)
Q Consensus 344 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 414 (740)
.+.++.+.+.+.++..+...++|+.|++++|.+++..+. ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 357888888887777777778899999999999855442 2333366 89999999999997767666664 99
Q ss_pred CcEEeccCcccccccchhhhh---cC-CCCcEEeCCCCcccCcCcccc----CC-CCCCCEEEcccCcCcccC----Ccc
Q 044924 415 LQILDLSNNQLIGEIPEHLAV---GC-VNLEYLTLSNNNLEGHMFTRN----FN-LTNLRWLQLESNHFVGEI----PQS 481 (740)
Q Consensus 415 L~~L~l~~n~~~~~~~~~~~~---~~-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~----~~~ 481 (740)
|++|++++|.+.+..+..+.. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988666554332 34 899999999999987766543 33 369999999999998533 334
Q ss_pred ccCCC-CCCEEEccCCcCCCCCcccc----cCC-CCCceecccCCcccCC----CchhhhC-CCCCcEEEcccCcCCCCC
Q 044924 482 LSKCS-SLEGLYLNNNSLSGKIPRWL----GNL-KGLKHIIMPENHLEGP----IPMEFCQ-LYSLQLLDISDNNISGSL 550 (740)
Q Consensus 482 ~~~l~-~L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~ 550 (740)
+...+ +|++|++++|.+.+..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 99999999999987766544 445 5999999999999863 4455555 469999999999988654
Q ss_pred C
Q 044924 551 P 551 (740)
Q Consensus 551 ~ 551 (740)
+
T Consensus 242 ~ 242 (362)
T 3goz_A 242 L 242 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=193.21 Aligned_cols=227 Identities=19% Similarity=0.185 Sum_probs=133.0
Q ss_pred CccEEEcccCcCCCcCchhHh--hhCCCCcEEEccCCcCCCCCCccc--cCCCCCcEEeccCcccccccch---hhhhcC
Q 044924 365 QLRLLDVSNNNFQGHIPVEIG--DILPSLISFNISMNALNGSIPSSF--GNINSLQILDLSNNQLIGEIPE---HLAVGC 437 (740)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~~ 437 (740)
.++.+.+.++.+.......+. ..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+. ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 356666666665422111111 113568888888888888887777 7888888888888887754431 111245
Q ss_pred CCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCccc--CCccccCCCCCCEEEccCCcCCCCCcccccCCCCCcee
Q 044924 438 VNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGE--IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHI 515 (740)
Q Consensus 438 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 515 (740)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++. +..+..+++|++|
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~~~~~l~~L~~L 202 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----------------------ALCPHKFPAIQNL 202 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----------------------TSCTTSSCCCCSC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH----------------------HHhhhcCCCCCEE
Confidence 6666666666666555555555555555555555554321 110 1112344455555
Q ss_pred cccCCcccCCCch----hhhCCCCCcEEEcccCcCCCCCCcccc-c---cCccEEecCCccccccccccccccCCcceEE
Q 044924 516 IMPENHLEGPIPM----EFCQLYSLQLLDISDNNISGSLPSCFH-L---LSIEQVHLSKNMLRGQLKRGTFFNCSSLVTL 587 (740)
Q Consensus 516 ~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~-~---~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 587 (740)
++++|.++. ++. .+..+++|++|++++|.+.+..|..+. + ++|+.|++++|.++ .+|.. +. ++|++|
T Consensus 203 ~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~-~~--~~L~~L 277 (310)
T 4glp_A 203 ALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG-LP--AKLRVL 277 (310)
T ss_dssp BCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC-CC--SCCSCE
T ss_pred ECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh-hc--CCCCEE
Confidence 555555431 121 134455555555555555554332222 2 46666666666665 55554 32 788889
Q ss_pred EccCCcCCCCCCccccCcCCCcEEEcCCCcCcc
Q 044924 588 DLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG 620 (740)
Q Consensus 588 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 620 (740)
+|++|++++. |. +..+++|++|+|++|++++
T Consensus 278 ~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999988854 43 6778899999999998873
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.7e-21 Score=200.60 Aligned_cols=256 Identities=19% Similarity=0.168 Sum_probs=198.6
Q ss_pred CCCCEEEecCCCCCCCCCCCCCCC--CCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCC-CCccccCCCCCc
Q 044924 340 TRLETLSLVNDSLAGPFRLPIHSH--KQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGS-IPSSFGNINSLQ 416 (740)
Q Consensus 340 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 416 (740)
..++.++++++.+. +..+..+ +.++.+++++|.+.+..+. .+. +++|++|++++|.+++. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 45889999988765 2334444 7899999999999866555 443 78999999999998865 777889999999
Q ss_pred EEeccCcccccccchhhhhcCCCCcEEeCCCC-cccCc-CccccCCCCCCCEEEcccC-cCccc-CCccccCCC-CCCEE
Q 044924 417 ILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNN-NLEGH-MFTRNFNLTNLRWLQLESN-HFVGE-IPQSLSKCS-SLEGL 491 (740)
Q Consensus 417 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L 491 (740)
+|++++|.+.+..+..+. .+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 999999998877776664 5999999999999 67653 5556778999999999999 88754 566788899 99999
Q ss_pred EccCC--cCC-CCCcccccCCCCCceecccCCc-ccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCc
Q 044924 492 YLNNN--SLS-GKIPRWLGNLKGLKHIIMPENH-LEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567 (740)
Q Consensus 492 ~l~~n--~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 567 (740)
++++| .+. +.++..+..+++|+.|++++|. +++..+..+.++++|++|++++|. +..+.
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~--------------- 263 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPE--------------- 263 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGG---------------
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHH---------------
Confidence 99999 454 3556777889999999999999 777778889999999999999985 11111
Q ss_pred cccccccccccccCCcceEEEccCCcCCCCCCccccCc-CCCcEEEcCCCcCcccCCccccC
Q 044924 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGL-SQLRHLILGHNNLEGEVPVQLCG 628 (740)
Q Consensus 568 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~ 628 (740)
.+ ..+.++++|+.|++++| ++ ...+..+ .+++.|++++|++++..|..++.
T Consensus 264 ----~~--~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 264 ----TL--LELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ----GG--GGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred ----HH--HHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 01 12666788888888887 33 2233333 23666778888888888877664
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=7.5e-20 Score=180.68 Aligned_cols=178 Identities=25% Similarity=0.289 Sum_probs=100.0
Q ss_pred cEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccC
Q 044924 416 QILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNN 495 (740)
Q Consensus 416 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 495 (740)
++++++++.+. .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 17 ~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp TEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 44444444433 344322 13445555555555444444444455555555555555444444444455555555555
Q ss_pred CcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccc
Q 044924 496 NSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKR 575 (740)
Q Consensus 496 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 575 (740)
|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++| .++ .++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-----------------------~l~-~~~~ 148 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-----------------------QLQ-SIPA 148 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-----------------------CCC-CCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-----------------------cCC-ccCH
Confidence 5554444444444445555555555444433334444444444444444 444 3444
Q ss_pred cccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCccc
Q 044924 576 GTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGE 621 (740)
Q Consensus 576 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 621 (740)
..|..+++|++|+|++|++++..+..|..+++|++|+|++|++...
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 4477888888888888888877777888888999999999988743
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=5.6e-20 Score=191.15 Aligned_cols=242 Identities=18% Similarity=0.169 Sum_probs=147.9
Q ss_pred cEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcE-EeC
Q 044924 367 RLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEY-LTL 445 (740)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~-L~l 445 (740)
++++.++++++ .+|..+ .+++++|++++|.|+...+..|.++++|++|++++|++.+.+|..++.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666666 666554 2456677777776664444456666666666666666655555555555555443 333
Q ss_pred CCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccC-CcccC
Q 044924 446 SNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPE-NHLEG 524 (740)
Q Consensus 446 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~ 524 (740)
.+|+++...+..|..+++|++|++++|. +....+..+....++..+++.+ +.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~------------------------l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG------------------------IKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC------------------------CSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCchhhhhccccccccccccc------------------------cccCCchhhcccchhhhhhhcccccccc
Confidence 4445554444444444555555554444 4433333344444455555533 33443
Q ss_pred CCchhhhCCC-CCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCcccc
Q 044924 525 PIPMEFCQLY-SLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVD 603 (740)
Q Consensus 525 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 603 (740)
..+..|..+. .++.|++++|+++...+..+...+|+.+.+.++...+.+|..+|.++++|++|||++|+++..++..|
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~- 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL- 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC-
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh-
Confidence 3334444443 46777777777776666677777777888775444447787778889999999999999986555444
Q ss_pred CcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCC
Q 044924 604 GLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNN 640 (740)
Q Consensus 604 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 640 (740)
.+|++|.+.++.-...+| .+..+++|+.+++.++
T Consensus 223 --~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 --ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp --TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred --ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 456666666655444777 4788899999999764
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=5.3e-20 Score=187.40 Aligned_cols=195 Identities=22% Similarity=0.297 Sum_probs=118.0
Q ss_pred ccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCC
Q 044924 409 FGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSL 488 (740)
Q Consensus 409 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 488 (740)
+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 345667777777777655 3442 2346666777776666665433 5566666666666666653 22 45556666
Q ss_pred CEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcc
Q 044924 489 EGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNM 568 (740)
Q Consensus 489 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 568 (740)
++|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------------- 165 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-------------------- 165 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--------------------
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC--------------------
Confidence 6666666665532 2 25555666666666665553322 5555555555555555542
Q ss_pred ccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 044924 569 LRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 644 (740)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 644 (740)
++. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 166 ----~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 ----LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ----CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ----Chh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 222 5666777777777777764433 667777777777777777443 26777777777777777764
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=3.1e-22 Score=211.70 Aligned_cols=245 Identities=18% Similarity=0.201 Sum_probs=168.8
Q ss_pred CCCCCCCCccEEEcccCcCCCcCchhHh---hhCCCCcEEEccCCcC---CCCCCccc-------cCCCCCcEEeccCcc
Q 044924 358 LPIHSHKQLRLLDVSNNNFQGHIPVEIG---DILPSLISFNISMNAL---NGSIPSSF-------GNINSLQILDLSNNQ 424 (740)
Q Consensus 358 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~l~~n~ 424 (740)
..+..+++|+.|++++|.+.+..+..+. ..+++|++|++++|.+ ++.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3456788999999999999865554432 2378999999999754 34455544 688999999999998
Q ss_pred ccc----ccchhhhhcCCCCcEEeCCCCcccCcCccccC----CC---------CCCCEEEcccCcCc-ccCC---cccc
Q 044924 425 LIG----EIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNF----NL---------TNLRWLQLESNHFV-GEIP---QSLS 483 (740)
Q Consensus 425 ~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~~~-~~~~---~~~~ 483 (740)
+.+ .++..+ ..+++|++|++++|.++...+..+. .+ ++|++|++++|.+. ..++ ..+.
T Consensus 106 l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 106 FGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 876 355555 4688999999999988654333333 23 77888888888776 2333 3556
Q ss_pred CCCCCCEEEccCCcCCC-----CCcccccCCCCCceecccCCccc----CCCchhhhCCCCCcEEEcccCcCCCCCCccc
Q 044924 484 KCSSLEGLYLNNNSLSG-----KIPRWLGNLKGLKHIIMPENHLE----GPIPMEFCQLYSLQLLDISDNNISGSLPSCF 554 (740)
Q Consensus 484 ~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 554 (740)
.+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|..+..+++|++|++++|.+++....
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-- 262 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA-- 262 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH--
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH--
Confidence 67778888888877652 23335667777777777777774 34566666777777777777766532110
Q ss_pred cccCccEEecCCcccccccccccc--ccCCcceEEEccCCcCCC----CCCccc-cCcCCCcEEEcCCCcCcccCC
Q 044924 555 HLLSIEQVHLSKNMLRGQLKRGTF--FNCSSLVTLDLSYNRLNG----SIPNWV-DGLSQLRHLILGHNNLEGEVP 623 (740)
Q Consensus 555 ~~~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~p 623 (740)
.++.. + ..+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 263 -----------------~l~~~-l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 -----------------AVVDA-FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp -----------------HHHHH-HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred -----------------HHHHH-HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 12222 4 337888888888888886 366666 567888888888888886653
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=178.10 Aligned_cols=187 Identities=20% Similarity=0.191 Sum_probs=133.1
Q ss_pred EEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCc-ccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccC
Q 044924 466 WLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544 (740)
Q Consensus 466 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 544 (740)
.+++++|.++ .+|..+. ..+++|++++|.+.+..+ ..|..+++|+.|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5555555554 3444332 244566666666654433 33556666666666666666555556666666666666666
Q ss_pred cCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCc
Q 044924 545 NISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624 (740)
Q Consensus 545 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 624 (740)
.++ .++...|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|.
T Consensus 92 ~l~------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 92 RLE------------------------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCC------------------------CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred ccC------------------------ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 555 34444488899999999999999988899999999999999999999988899
Q ss_pred cccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 625 QLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 625 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
.|..+++|+.|++++|++. |+|.+.++..|+.... ++ ...++|..|..+.|..+.
T Consensus 148 ~~~~l~~L~~L~L~~N~l~-----------------c~c~l~~l~~~~~~~~--~~--~~~~~C~~P~~l~g~~l~ 202 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFN-----------------CNCYLAWLGEWLRKKR--IV--TGNPRCQKPYFLKEIPIQ 202 (220)
T ss_dssp TTTTCTTCCEEECCSCCEE-----------------CSGGGHHHHHHHHHSC--CB--CCCCEEEESGGGTTEEGG
T ss_pred HhcCCCCCCEEEecCcCCc-----------------CCCchHHHHHHHHhcC--cc--ccCCccCCChHHCCCChh
Confidence 9999999999999999998 5566666666654322 11 234589999999998876
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1e-19 Score=185.37 Aligned_cols=191 Identities=23% Similarity=0.352 Sum_probs=153.0
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEE
Q 044924 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWL 467 (740)
Q Consensus 388 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 467 (740)
+++|++|++++|.++. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|+.|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 5789999999999984 44 6889999999999999987 4555 45799999999999999874 368899999999
Q ss_pred EcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
++++|.+++ ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 999999985 44 38999999999999999986544 8899999999999999986444 889999999999999887
Q ss_pred CCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 548 GSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 548 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
+..+ +..+++|++|+|++|++++..+ +..+++|++|++++|+++
T Consensus 187 ~~~~--------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP--------------------------LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG--------------------------GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cChh--------------------------hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 4322 4455566666666666654332 556666666666666665
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.9e-19 Score=184.02 Aligned_cols=201 Identities=19% Similarity=0.119 Sum_probs=149.7
Q ss_pred CEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCC-ccccCCCCCcE-Eec
Q 044924 343 ETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIP-SSFGNINSLQI-LDL 420 (740)
Q Consensus 343 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l 420 (740)
+.++.++++++.+ |..+ .++++.|++++|+++ .+|...+..+++|++|++++|.+.+.+| ..|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 5678888887753 3333 468999999999999 8888777779999999999999876555 47889988776 556
Q ss_pred cCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEccc-CcCcccCCccccCCC-CCCEEEccCCcC
Q 044924 421 SNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLES-NHFVGEIPQSLSKCS-SLEGLYLNNNSL 498 (740)
Q Consensus 421 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~l~~n~~ 498 (740)
.+|++. .++...+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.+
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 677776 67767777899999999999999987777777777888888866 455544445565553 577888888888
Q ss_pred CCCCcccccCCCCCceecccC-CcccCCCchhhhCCCCCcEEEcccCcCCCC
Q 044924 499 SGKIPRWLGNLKGLKHIIMPE-NHLEGPIPMEFCQLYSLQLLDISDNNISGS 549 (740)
Q Consensus 499 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 549 (740)
.. ++.......+|+.+++.+ |.++...+..|..+++|++|++++|+++..
T Consensus 167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 74 344333456777787764 556644455677778888888888877733
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=7.5e-20 Score=190.97 Aligned_cols=155 Identities=27% Similarity=0.295 Sum_probs=97.9
Q ss_pred CCEEEccCCcCCCCCccccc-CCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecC
Q 044924 488 LEGLYLNNNSLSGKIPRWLG-NLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLS 565 (740)
Q Consensus 488 L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~ 565 (740)
++.|++++|.+.+..+..|. ++++|+.|++++|.+++..+..|..+++|++|++++|++....+..+. +.+|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44455555544444344444 455555555555555544444455555555555555555544444333 4555555555
Q ss_pred CccccccccccccccCCcceEEEccCCcCCCCCCccc---cCcCCCcEEEcCCCcCcccCCccccCCCC--CCEEeCCCC
Q 044924 566 KNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWV---DGLSQLRHLILGHNNLEGEVPVQLCGLNQ--LQLLDLSNN 640 (740)
Q Consensus 566 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~l~~n 640 (740)
+|.+. .++...|.++++|+.|+|++|.+++..+..| ..+++|++|+|++|++++..+..+..++. ++.|++++|
T Consensus 121 ~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 55555 3333448889999999999999996655555 56899999999999999666667777776 488999999
Q ss_pred ccc
Q 044924 641 NLH 643 (740)
Q Consensus 641 ~~~ 643 (740)
++.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 998
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=9.6e-19 Score=167.39 Aligned_cols=160 Identities=24% Similarity=0.287 Sum_probs=101.5
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecC
Q 044924 487 SLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLS 565 (740)
Q Consensus 487 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~ 565 (740)
+|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+. +++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 445555555554443333444555555555555555544444445555555555555555544444332 4555555555
Q ss_pred CccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccC
Q 044924 566 KNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGH 645 (740)
Q Consensus 566 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 645 (740)
+|.++ .++...|..+++|++|+|++|.+++..+..+..+++|++|++++|.+. +.+++|++|+++.|.++|.
T Consensus 109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence 55555 344444778888899999998888777777888889999999998766 3456888899999999988
Q ss_pred CCCCCCccc
Q 044924 646 IPPCFDNTT 654 (740)
Q Consensus 646 ~p~~~~~~~ 654 (740)
+|+.++.+.
T Consensus 181 ip~~~~~l~ 189 (208)
T 2o6s_A 181 VRNSAGSVA 189 (208)
T ss_dssp BBCTTSSBC
T ss_pred eeccCcccc
Confidence 888776543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=9.1e-19 Score=167.57 Aligned_cols=163 Identities=24% Similarity=0.190 Sum_probs=85.6
Q ss_pred CCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecc
Q 044924 438 VNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIM 517 (740)
Q Consensus 438 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 517 (740)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555555444444445555555555555555333334455555555555555555444444455555555555
Q ss_pred cCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCC
Q 044924 518 PENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGS 597 (740)
Q Consensus 518 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 597 (740)
++|.+++..+..|..+++|++|++++|.+++ ++...+..+++|++|++++|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------------------------VPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------------------------CCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccce------------------------eCHHHhccCCCccEEEecCCCeec-
Confidence 5555554444445555555555555555543 222235555666666666665442
Q ss_pred CCccccCcCCCcEEEcCCCcCcccCCccccCCCC
Q 044924 598 IPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQ 631 (740)
Q Consensus 598 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 631 (740)
.+++|++|+++.|+++|.+|..++.++.
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2345666666666666666666555443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=4e-18 Score=186.07 Aligned_cols=187 Identities=25% Similarity=0.333 Sum_probs=122.0
Q ss_pred CCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEc
Q 044924 414 SLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYL 493 (740)
Q Consensus 414 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 493 (740)
+|+.|++++|.+.+ +|..+ .++|++|++++|.++. +| ..+++|+.|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 77788888877764 66654 3667888888777774 33 346777777777777774 555 544 7777777
Q ss_pred cCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccc
Q 044924 494 NNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQL 573 (740)
Q Consensus 494 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~ 573 (740)
++|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|+|++|.++ .+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCCCC-ch
Confidence 7777765 444 56777777777777775 443 45677777777777775 333 33 66777777777666 44
Q ss_pred cccccccCCcc-------eEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCC
Q 044924 574 KRGTFFNCSSL-------VTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGL 629 (740)
Q Consensus 574 ~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 629 (740)
|. +.. +| +.|+|++|.|+ .+|..+..+++|++|+|++|++++.+|..++.+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 44 322 45 67777777776 455556566777777777777766666655543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=9.6e-18 Score=183.02 Aligned_cols=189 Identities=22% Similarity=0.327 Sum_probs=127.5
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEc
Q 044924 390 SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQL 469 (740)
Q Consensus 390 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 469 (740)
+++.|++++|.+++ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67777777777775 55544 267777777777766 566 236777777777777776 444 443 7777777
Q ss_pred ccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCC
Q 044924 470 ESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGS 549 (740)
Q Consensus 470 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 549 (740)
++|.+++ +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+++ +|. |. ++|++|++++|.++.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~- 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES- 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-
Confidence 7777774 454 46777777777777774 444 46777777777777775 444 54 677777777777773
Q ss_pred CCccccccCc-------cEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCC
Q 044924 550 LPSCFHLLSI-------EQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQ 607 (740)
Q Consensus 550 ~~~~~~~~~L-------~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 607 (740)
+|. +.- +| +.|+|++|.++ .+|.. +..+++|+.|+|++|++++.+|..+..++.
T Consensus 195 lp~-~~~-~L~~~~~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV-RNHHSEETEIFFRCRENRIT-HIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC---------CCEEEECCSSCCC-CCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH-hhhcccccceEEecCCCcce-ecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 333 222 55 77777777777 56665 555777777777777777777776665443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.8e-17 Score=167.13 Aligned_cols=171 Identities=24% Similarity=0.393 Sum_probs=101.6
Q ss_pred CCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceec
Q 044924 437 CVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHII 516 (740)
Q Consensus 437 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 516 (740)
+++|++|++++|.+... ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------------- 104 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---------------- 104 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------------
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC----------------
Confidence 44555555555555433 124445555555555555543222 4445555555555554442
Q ss_pred ccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCC
Q 044924 517 MPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNG 596 (740)
Q Consensus 517 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 596 (740)
++ .+..+++|++|++++|.+.+. +....+++|+.|++++|.+++ + . .+..+++|+.|++++|.+++
T Consensus 105 ---------~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 105 ---------LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD-I-T-VLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp ---------GG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C-G-GGGGCTTCSEEECCSSCCCC
T ss_pred ---------Ch-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-c-h-hhccCCCCCEEEccCCcccc
Confidence 11 244445555555555544432 223334455555555555543 2 2 27788888888888888886
Q ss_pred CCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccC
Q 044924 597 SIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGH 645 (740)
Q Consensus 597 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 645 (740)
..| +..+++|++|++++|++++ +| .+..+++|+.|++++|++...
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 554 8888889999999988884 44 378888899999998888753
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.7e-17 Score=160.95 Aligned_cols=154 Identities=23% Similarity=0.311 Sum_probs=108.8
Q ss_pred CEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccC
Q 044924 465 RWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544 (740)
Q Consensus 465 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 544 (740)
+.++.+++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34555555544 3443322 45666666666666555555666666666666666665444455556666666666666
Q ss_pred cCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCc
Q 044924 545 NISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPV 624 (740)
Q Consensus 545 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 624 (740)
+++ .++...|..+++|++|+|++|.++ .+|..+..+++|++|+|++|++++..+.
T Consensus 99 ~l~------------------------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 99 QLT------------------------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCC------------------------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred cCC------------------------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 554 344444788899999999999998 6788889999999999999999977777
Q ss_pred cccCCCCCCEEeCCCCccccCC
Q 044924 625 QLCGLNQLQLLDLSNNNLHGHI 646 (740)
Q Consensus 625 ~~~~l~~L~~L~l~~n~~~~~~ 646 (740)
.|..+++|+.|++++|++.+.+
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTB
T ss_pred HHhCCCCCCEEEeeCCCccCCc
Confidence 8999999999999999998544
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=155.36 Aligned_cols=163 Identities=26% Similarity=0.342 Sum_probs=122.0
Q ss_pred CEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcc
Q 044924 489 EGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNM 568 (740)
Q Consensus 489 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 568 (740)
+.++++++.+. .+|..+. ++|+.|++++|.++ .+|..|..+++|++|++++|.++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~--------------------- 67 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS--------------------- 67 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC---------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC---------------------
Confidence 35555555555 3343332 45666666666665 45566666666777776666665
Q ss_pred ccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCC
Q 044924 569 LRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPP 648 (740)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~ 648 (740)
.++...|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..|..+++|+.|++++|++.
T Consensus 68 ---~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~----- 139 (193)
T 2wfh_A 68 ---TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY----- 139 (193)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE-----
T ss_pred ---EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee-----
Confidence 344444888899999999999999888889999999999999999999666667999999999999999998
Q ss_pred CCCcccccccccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 649 CFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
|+|.+.+|..|+.... .....++|.+|+.+.|..+.
T Consensus 140 ------------C~c~l~~l~~~~~~~~----~~~~~~~C~~P~~l~g~~l~ 175 (193)
T 2wfh_A 140 ------------CDCNMQWLSDWVKSEY----KEPGIARCAGPGEMADKLLL 175 (193)
T ss_dssp ------------CSGGGHHHHHHHHHSS----CCCSCCBEEESGGGTTCBTT
T ss_pred ------------cCCcCHHHHHHHHhcc----CCCCCcCcCCchHHCCCCcc
Confidence 7777777777765432 23346799999999999877
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.6e-17 Score=173.31 Aligned_cols=130 Identities=29% Similarity=0.275 Sum_probs=80.9
Q ss_pred cEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccC-CCCCCCEEEcccCcCcccCCccccCCCCCCEEEcc
Q 044924 416 QILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNF-NLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLN 494 (740)
Q Consensus 416 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 494 (740)
+.++++++++. .+|..+ ...++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 35555555544 455433 23456666666666665555555 66666666666666665555566666666666666
Q ss_pred CCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCC
Q 044924 495 NNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGS 549 (740)
Q Consensus 495 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 549 (740)
+|.+....+..|.++++|+.|++++|.+++..+..|..+++|++|++++|++...
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 6666655555666666677777777766666666666677777777777766643
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=5.8e-17 Score=179.08 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=108.2
Q ss_pred CCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEc
Q 044924 414 SLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYL 493 (740)
Q Consensus 414 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 493 (740)
.+..+.+..+.+.+.++. ..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 344455555555433322 2366777777777777653 246667777777777777764333 667777777777
Q ss_pred cCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccc
Q 044924 494 NNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQL 573 (740)
Q Consensus 494 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~ 573 (740)
++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. +....+++|+.|+|++|.+.+..
T Consensus 95 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 95 DENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred cCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence 7777653 2 2566677777777777776642 3466667777777777766643 33333455555555555554322
Q ss_pred cccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 574 KRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 574 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
+ +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|++.
T Consensus 170 ~---l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 P---LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G---GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred h---hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 2 44455555555555555432 2 3444555555555555544
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.3e-17 Score=155.12 Aligned_cols=164 Identities=22% Similarity=0.266 Sum_probs=115.3
Q ss_pred CEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCch-hhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCc
Q 044924 489 EGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPM-EFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567 (740)
Q Consensus 489 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 567 (740)
++++++++.+. .+|..+. .++++|++++|.+++..+. .|..+++|++|++++|.++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------- 67 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-------------------- 67 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC--------------------
Confidence 55666666654 3444332 2555555555555544332 2455555555555555544
Q ss_pred cccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCC
Q 044924 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 568 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 647 (740)
+..+. .|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+
T Consensus 68 ---~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c--- 140 (192)
T 1w8a_A 68 ---GIEPN-AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC--- 140 (192)
T ss_dssp ---CBCTT-TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC---
T ss_pred ---CcCHh-HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC---
Confidence 33333 38889999999999999998888889999999999999999999999999999999999999999984
Q ss_pred CCCCcccccccccCCCCCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 648 PCFDNTTLHESYSNSSSLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
++.+.++..|+.... . ......|..|+.+.|..+.
T Consensus 141 --------------~c~l~~~~~~l~~~~--~--~~~~~~C~~P~~l~~~~l~ 175 (192)
T 1w8a_A 141 --------------NCHLAWFAEWLRKKS--L--NGGAARCGAPSKVRDVQIK 175 (192)
T ss_dssp --------------SGGGHHHHHHHHHHC--C--SGGGCBBCSSTTTTTSBGG
T ss_pred --------------cCcchHHHHHHHHcC--C--CCCCCCCCCChHHcCCChh
Confidence 444444444443321 1 1235679999999998866
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=4e-17 Score=164.53 Aligned_cols=189 Identities=25% Similarity=0.312 Sum_probs=143.9
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcc
Q 044924 391 LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLE 470 (740)
Q Consensus 391 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 470 (740)
+..+.+..+.+++.. .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|+.|+++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 344455555555332 3457899999999999877 5554 3469999999999999998655 8899999999999
Q ss_pred cCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCC
Q 044924 471 SNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL 550 (740)
Q Consensus 471 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 550 (740)
+|.+++ ++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..
T Consensus 99 ~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 99 ENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 999984 33 488999999999999998754 4677888888888888888754 56778888888888888776332
Q ss_pred CccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcc
Q 044924 551 PSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEG 620 (740)
Q Consensus 551 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 620 (740)
+ +..+++|+.|+|++|.+++ ++ .+..+++|++|++++|+++.
T Consensus 173 ~--------------------------l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--------------------------LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--------------------------GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--------------------------hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 2 5566777777777777764 33 36777777777777777763
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=153.79 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=83.0
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccC
Q 044924 393 SFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESN 472 (740)
Q Consensus 393 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 472 (740)
.+++++|.++ .+|..+. +.+++|++++|.+.+..+...+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4455555444 2333221 234555555555543323333344555555555555555555555555566666666666
Q ss_pred cCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 473 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 473 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
.+++..+..|..+++|++|++++|.+.+..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 655444455555666666666666665555555666666666666666666555555666666666666666554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.4e-17 Score=160.83 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=90.5
Q ss_pred cCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEE
Q 044924 483 SKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQV 562 (740)
Q Consensus 483 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 562 (740)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+..+. .. .+|+.|
T Consensus 38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC-CC-SSCCEE
T ss_pred hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc-cc-CcccEE
Confidence 333444444444444432 22 34444444444444444443222 44555555555555555432221 11 555666
Q ss_pred ecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 044924 563 HLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNL 642 (740)
Q Consensus 563 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 642 (740)
++++|.+++ ++ . +..+++|+.|+|++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++
T Consensus 112 ~L~~N~l~~-~~-~-l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 112 FLDNNELRD-TD-S-LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ECCSSCCSB-SG-G-GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EccCCccCC-Ch-h-hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 666665553 33 2 77788888888888888854 3 578888888888888888855 6678888888888888888
Q ss_pred ccCC
Q 044924 643 HGHI 646 (740)
Q Consensus 643 ~~~~ 646 (740)
.+..
T Consensus 185 ~~~~ 188 (263)
T 1xeu_A 185 VNEP 188 (263)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 7653
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4.7e-17 Score=167.55 Aligned_cols=216 Identities=16% Similarity=0.129 Sum_probs=103.3
Q ss_pred CCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcC----cccCCccccCCCC
Q 044924 412 INSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHF----VGEIPQSLSKCSS 487 (740)
Q Consensus 412 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~l~~ 487 (740)
+++|+.+++.. .+. .++...|.+|++|+.++++.|.+..+.+.+|.++.++..+....+.. ......+|..+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 55555555555 333 45555555555555555555555544455555544444444333111 1112223334444
Q ss_pred CC-EEEccCCcCCCCCcccc----cCCCCCceecccCCcccCCCchhh-hCCCCCcEEEcccCcCCCCCCcccc-ccCcc
Q 044924 488 LE-GLYLNNNSLSGKIPRWL----GNLKGLKHIIMPENHLEGPIPMEF-CQLYSLQLLDISDNNISGSLPSCFH-LLSIE 560 (740)
Q Consensus 488 L~-~L~l~~n~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~ 560 (740)
|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+ ..+++|+.+++++|+++...+.+|. +.+|+
T Consensus 178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 44 23332211 111110 01233333333332111 111111 1256666666666666655555554 55666
Q ss_pred EEecCCccccccccccccccCCcce-EEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEe
Q 044924 561 QVHLSKNMLRGQLKRGTFFNCSSLV-TLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLD 636 (740)
Q Consensus 561 ~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 636 (740)
.+++.+| +. .++..+|.+|++|+ .+++++ .++...+.+|.+|++|+++++++|+++...+..|.++++|+.++
T Consensus 254 ~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666555 33 45555566666666 666665 55545556666666666666666666655555666666666654
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3e-16 Score=150.98 Aligned_cols=110 Identities=22% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceec
Q 044924 437 CVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHII 516 (740)
Q Consensus 437 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 516 (740)
+++|++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..|.++++|+.|+
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 34444444444444433344444444444444444444432223334444444444444444444444444444444444
Q ss_pred ccCCcccCCCchhhhCCCCCcEEEcccCcC
Q 044924 517 MPENHLEGPIPMEFCQLYSLQLLDISDNNI 546 (740)
Q Consensus 517 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 546 (740)
+++|.+++..+..|..+++|++|++++|.+
T Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 444444444333444444444444444443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=5.2e-16 Score=150.38 Aligned_cols=153 Identities=24% Similarity=0.197 Sum_probs=105.3
Q ss_pred CcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccC
Q 044924 440 LEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPE 519 (740)
Q Consensus 440 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 519 (740)
.+.++.+++.++.. |..+ .++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34455555554432 2222 25666667767766666666677777777777777777655555677777888888888
Q ss_pred CcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCC
Q 044924 520 NHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 599 (740)
Q Consensus 520 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 599 (740)
|.+++..+..|..+++|++|++++|++. .+|.. +..+++|++|+|++|++++..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------~lp~~-~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT------------------------ELPRG-IERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------SCCTT-GGGCTTCSEEECCSSCCCCCCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc------------------------ccCcc-cccCCCCCEEECCCCcCCccCH
Confidence 8887666666777888888888888776 33333 5667778888888888876666
Q ss_pred ccccCcCCCcEEEcCCCcCcc
Q 044924 600 NWVDGLSQLRHLILGHNNLEG 620 (740)
Q Consensus 600 ~~~~~l~~L~~L~L~~n~l~~ 620 (740)
..|..+++|++|+|++|++..
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCT
T ss_pred HHHhCCCCCCEEEeeCCCccC
Confidence 677778888888888887763
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=2e-16 Score=174.73 Aligned_cols=198 Identities=24% Similarity=0.294 Sum_probs=157.1
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEc
Q 044924 390 SLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQL 469 (740)
Q Consensus 390 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 469 (740)
.+..+.+..+.+....+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34555666666654433 467788999999999876 5553 3468999999999999887655 788999999999
Q ss_pred ccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCC
Q 044924 470 ESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGS 549 (740)
Q Consensus 470 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 549 (740)
++|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 9999874 33 688899999999999998753 4588899999999999999865 5788999999999999999877
Q ss_pred CCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccC
Q 044924 550 LPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDG 604 (740)
Q Consensus 550 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 604 (740)
.| ...+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++.+.....+..
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred hh-hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcCCccccccc
Confidence 66 5558899999999999885 43 2888999999999999988654444333
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.5e-16 Score=148.91 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=26.4
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 482 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..++.+++|++|++++|.++
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC
Confidence 333444444444444332 1123344444444444444444333344444444444444444433
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.3e-16 Score=149.09 Aligned_cols=153 Identities=16% Similarity=0.224 Sum_probs=128.7
Q ss_pred cCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccE
Q 044924 483 SKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQ 561 (740)
Q Consensus 483 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~ 561 (740)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+. +++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56678999999999988 455 6889999999999999776 334788999999999999999975555554 899999
Q ss_pred EecCCccccccccccccccCCcceEEEccCCc-CCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCC
Q 044924 562 VHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNR-LNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNN 640 (740)
Q Consensus 562 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 640 (740)
|++++|.+++..+.. +..+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTK-INTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHH-HhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 999999999766655 8999999999999998 66 555 68999999999999999984 45 7889999999999999
Q ss_pred cccc
Q 044924 641 NLHG 644 (740)
Q Consensus 641 ~~~~ 644 (740)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9763
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=2.8e-15 Score=157.37 Aligned_cols=263 Identities=12% Similarity=0.124 Sum_probs=125.6
Q ss_pred CCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCCCCCccccCCCCCcEE
Q 044924 339 NTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNGSIPSSFGNINSLQIL 418 (740)
Q Consensus 339 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 418 (740)
+..++.+.+.+. ++.+...+|.++ +|+.+.+..+ ++ .++...|..+ +|+.+.+.. .++...+.+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 345555555432 222233344443 4555555544 33 3444444332 455555554 3443444455556666666
Q ss_pred eccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcC
Q 044924 419 DLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSL 498 (740)
Q Consensus 419 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 498 (740)
++++|++. .++...|. +.+|+.+.+.. .++.+...+|.++++|+.+.+.++ ++.....+|.. .+|+.+.+
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l----- 255 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL----- 255 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-----
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-----
Confidence 66555544 45555543 45555555552 244444455555555555555442 22233333433 34444444
Q ss_pred CCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC-----CCCCcccc-ccCccEEecCCcccccc
Q 044924 499 SGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS-----GSLPSCFH-LLSIEQVHLSKNMLRGQ 572 (740)
Q Consensus 499 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~-~~~L~~L~L~~n~~~~~ 572 (740)
. +.++.+...+|.+|++|+.+++.++.+. ...+.+|. +.+|+.+.+.+ .++ .
T Consensus 256 -------------------p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~ 313 (401)
T 4fdw_A 256 -------------------P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-I 313 (401)
T ss_dssp -------------------E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-E
T ss_pred -------------------C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-E
Confidence 2 2233333445555555555555544332 11112222 22333333331 122 4
Q ss_pred ccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCC-CCCEEeCCCCc
Q 044924 573 LKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLN-QLQLLDLSNNN 641 (740)
Q Consensus 573 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~ 641 (740)
++..+|.+|++|+.++|..+ ++...+.+|.++ +|+++++++|......+..|.+++ +++.+.+..+.
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 44455666666666666543 444555566666 666666666666544555555553 55566655544
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=9.9e-17 Score=165.12 Aligned_cols=283 Identities=10% Similarity=0.093 Sum_probs=182.4
Q ss_pred CCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCC--CCCCCCCCCCCCccEEEcccCcCCCcCchhHhhh----
Q 044924 314 QHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLA--GPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDI---- 387 (740)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---- 387 (740)
+++++.|.+++.- ...-...+...+++|+.|++++|.+. .... +.++.++.+.+..+ .+|...|..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhcccccc
Confidence 4567777777642 11111222222778888888888876 2111 12222334444444 455666666
Q ss_pred ----CCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCc----ccCcCccccC
Q 044924 388 ----LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNN----LEGHMFTRNF 459 (740)
Q Consensus 388 ----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~ 459 (740)
+++|+.+.+.+ .++.+.+.+|.++++|+.+++++|.+. .++...|.++.++..+...... .......+|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 78899999988 777666678888999999999888776 6777777777777777766532 2233445565
Q ss_pred CCCCCC-EEEcccCcCcccCCccc----cCCCCCCEEEccCCcCCCCCcccc-cCCCCCceecccCCcccCCCchhhhCC
Q 044924 460 NLTNLR-WLQLESNHFVGEIPQSL----SKCSSLEGLYLNNNSLSGKIPRWL-GNLKGLKHIIMPENHLEGPIPMEFCQL 533 (740)
Q Consensus 460 ~l~~L~-~L~l~~n~~~~~~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l 533 (740)
.+..|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+ ..+++|+.+++++|.++.+.+.+|.+|
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 666666 44443322 111111 12345566666554211 111111 236777777777777776666677777
Q ss_pred CCCcEEEcccCcCCCCCCcccc-ccCcc-EEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEE
Q 044924 534 YSLQLLDISDNNISGSLPSCFH-LLSIE-QVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHL 611 (740)
Q Consensus 534 ~~L~~L~l~~n~l~~~~~~~~~-~~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 611 (740)
++|+.+++.+| +....+.+|. +.+|+ .+.+.+ .++ .++..+|.+|++|+.|++++|.++...+.+|.++++|+++
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 77777777776 6666666665 66777 777777 454 6777779999999999999999998888899999999998
Q ss_pred Ec
Q 044924 612 IL 613 (740)
Q Consensus 612 ~L 613 (740)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 74
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=3.8e-16 Score=154.70 Aligned_cols=170 Identities=20% Similarity=0.252 Sum_probs=93.4
Q ss_pred CCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEE
Q 044924 412 INSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGL 491 (740)
Q Consensus 412 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 491 (740)
+.++..++++++.+. .++. +..+++|++|++++|.++... .+..+++|+.|++++|.+++. +. +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEE
Confidence 344555556665554 3331 223556666666666555421 344555555555555555532 22 5555555555
Q ss_pred EccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccc
Q 044924 492 YLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRG 571 (740)
Q Consensus 492 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~ 571 (740)
++++|.+.+. +. +.. ++|+.|++++|.+++. + .+..+++|++|+++ +|.+++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls-----------------------~N~i~~ 142 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIR-----------------------NNKLKS 142 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECT-----------------------TSCCCB
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECC-----------------------CCcCCC
Confidence 5555555432 21 111 4555555555555432 1 34444455555554 444442
Q ss_pred cccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCccc
Q 044924 572 QLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGE 621 (740)
Q Consensus 572 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 621 (740)
++ .+..+++|+.|+|++|++++. ..+..+++|++|++++|++.+.
T Consensus 143 -~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 -IV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -CG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -Ch--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 33 267778888888888888755 5677788888888888887744
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=3.7e-17 Score=179.60 Aligned_cols=182 Identities=17% Similarity=0.212 Sum_probs=105.2
Q ss_pred CCCCCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCc-------------CCCCCCccccCCCCCcEEe-ccCcccc
Q 044924 361 HSHKQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNA-------------LNGSIPSSFGNINSLQILD-LSNNQLI 426 (740)
Q Consensus 361 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~ 426 (740)
..+++|+.|++++|.+. .+|..+.. +++|+.|++++|. ..+..|..+.++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 55778888888888887 78888776 6788888886654 3445566667777777777 5555432
Q ss_pred cccchhhhh-------cCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCC
Q 044924 427 GEIPEHLAV-------GCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLS 499 (740)
Q Consensus 427 ~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 499 (740)
.++..... ....|++|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 22211100 01235555555555554 232 555555555555555555 44555555555555555555555
Q ss_pred CCCcccccCCCCCceecccCCcccCCC-chhhhCCCCCcEEEcccCcCCCCC
Q 044924 500 GKIPRWLGNLKGLKHIIMPENHLEGPI-PMEFCQLYSLQLLDISDNNISGSL 550 (740)
Q Consensus 500 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 550 (740)
+ +| .++++++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 3 34 4555555555555555555443 555555555555555555555433
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=3.4e-14 Score=149.07 Aligned_cols=251 Identities=12% Similarity=0.127 Sum_probs=195.1
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEE
Q 044924 388 LPSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWL 467 (740)
Q Consensus 388 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 467 (740)
+..++.+.+.. .++.+...+|.++ +|+.+.+..+ +. .++...|.++ +|+.+.+.. .+..+...+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 34566666654 3443445567765 6888888776 44 6777777664 688888885 6777777888899999999
Q ss_pred EcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 468 QLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
++.+|.++.....+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 9998888855556666 688999999855 66566778999999999999875 56567778887 789999995 4566
Q ss_pred CCCCcccc-ccCccEEecCCcccc----ccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccC
Q 044924 548 GSLPSCFH-LLSIEQVHLSKNMLR----GQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEV 622 (740)
Q Consensus 548 ~~~~~~~~-~~~L~~L~L~~n~~~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 622 (740)
...+.+|. +.+|+.+.+.+|.+. ..++..+|.+|++|+.++|. +.++.....+|.++++|+.+.|..+ ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 66677776 889999999888764 24777789999999999999 4587778889999999999999766 66577
Q ss_pred CccccCCCCCCEEeCCCCccccCCCCCCCc
Q 044924 623 PVQLCGLNQLQLLDLSNNNLHGHIPPCFDN 652 (740)
Q Consensus 623 p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 652 (740)
+.+|.++ +|+.+++++|......+..|.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 8899999 9999999999877555455544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=4.9e-15 Score=136.09 Aligned_cols=84 Identities=29% Similarity=0.281 Sum_probs=37.4
Q ss_pred CCCCEEEcccCcCc-ccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEE
Q 044924 462 TNLRWLQLESNHFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLD 540 (740)
Q Consensus 462 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 540 (740)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 33444444444443 33344444444455555554444432 3344444444444444444433444444444444444
Q ss_pred cccCcCC
Q 044924 541 ISDNNIS 547 (740)
Q Consensus 541 l~~n~l~ 547 (740)
+++|.++
T Consensus 102 Ls~N~l~ 108 (168)
T 2ell_A 102 LSGNKLK 108 (168)
T ss_dssp CBSSSCC
T ss_pred ccCCccC
Confidence 4444443
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=2.2e-17 Score=181.34 Aligned_cols=182 Identities=22% Similarity=0.224 Sum_probs=133.7
Q ss_pred CCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCc-------------CCCCCcccccCCCCCceec-ccCCcccCC
Q 044924 460 NLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNS-------------LSGKIPRWLGNLKGLKHII-MPENHLEGP 525 (740)
Q Consensus 460 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~l~~~ 525 (740)
.+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~- 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD- 424 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-
Confidence 4555666666666655 555556666666666655443 3445566667777777776 44443321
Q ss_pred Cch------hhh--CCCCCcEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCC
Q 044924 526 IPM------EFC--QLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGS 597 (740)
Q Consensus 526 ~~~------~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 597 (740)
++. .+. ....|+.|++++|.+++. |....+++|+.|+|++|.++ .+|.. +.++++|+.|+|++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC-
Confidence 110 011 112589999999999874 55555899999999999998 77775 9999999999999999996
Q ss_pred CCccccCcCCCcEEEcCCCcCcccC-CccccCCCCCCEEeCCCCccccCCCC
Q 044924 598 IPNWVDGLSQLRHLILGHNNLEGEV-PVQLCGLNQLQLLDLSNNNLHGHIPP 648 (740)
Q Consensus 598 ~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~p~ 648 (740)
+| .++++++|++|+|++|++++.. |..+..+++|+.|++++|++++.+|.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 66 7999999999999999999776 99999999999999999999876653
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=3e-15 Score=140.56 Aligned_cols=130 Identities=25% Similarity=0.330 Sum_probs=93.8
Q ss_pred CEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcc-cccCCCCCceecccCCcccCCCchhhhCCCCCcEEEccc
Q 044924 465 RWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISD 543 (740)
Q Consensus 465 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 543 (740)
+.++++++.++ .+|..+.. ++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777665 55554433 788888888887755553 477888888888888888877788888888888888888
Q ss_pred CcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCccc
Q 044924 544 NNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGE 621 (740)
Q Consensus 544 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 621 (740)
|++++..+ ..|.++++|++|+|++|++++..|..|..+++|++|+|++|++.+.
T Consensus 88 N~l~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISN------------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECS------------------------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCH------------------------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 87774332 2356667777777777777777777777777777777777777644
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4.3e-15 Score=136.53 Aligned_cols=132 Identities=23% Similarity=0.203 Sum_probs=86.4
Q ss_pred CCCCEEEccCCcCC-CCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEec
Q 044924 486 SSLEGLYLNNNSLS-GKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHL 564 (740)
Q Consensus 486 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L 564 (740)
++|++|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG--------------- 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC---------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH---------------
Confidence 56777777777765 45566666666666666666666643 4556666666666666665533
Q ss_pred CCccccccccccccccCCcceEEEccCCcCCCCCC-ccccCcCCCcEEEcCCCcCcccCC---ccccCCCCCCEEeCCCC
Q 044924 565 SKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-NWVDGLSQLRHLILGHNNLEGEVP---VQLCGLNQLQLLDLSNN 640 (740)
Q Consensus 565 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~n 640 (740)
++.. +.++++|++|+|++|.+++..+ ..+..+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 87 --------~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 87 --------LDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp --------CCHH-HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred --------HHHH-HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 3322 5557777777777777775322 567777777777777777774443 36777777777777777
Q ss_pred ccc
Q 044924 641 NLH 643 (740)
Q Consensus 641 ~~~ 643 (740)
.+.
T Consensus 158 ~~~ 160 (168)
T 2ell_A 158 EDQ 160 (168)
T ss_dssp TSC
T ss_pred Chh
Confidence 765
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=3.3e-14 Score=150.19 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=23.4
Q ss_pred CChhhhcCCCCcEEEcCCCcccCCCCcccccCcCCccEEEccCC
Q 044924 206 LPWCLANMTSLRILDVSSNQLTGSISSSPLIHLTSIEELRLSDN 249 (740)
Q Consensus 206 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 249 (740)
...+|.+|.+|+.+.+..+ +. .|...+|.+|++|+++++..+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS 104 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred HHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC
Confidence 3445666666666666543 33 444445666666666666443
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=7.2e-16 Score=174.96 Aligned_cols=176 Identities=24% Similarity=0.270 Sum_probs=83.4
Q ss_pred CCccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCcCCC---------CCCccccCCCCCcEEeccCcccccccchhhh
Q 044924 364 KQLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNALNG---------SIPSSFGNINSLQILDLSNNQLIGEIPEHLA 434 (740)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 434 (740)
+.++.|++.++.+. .++... ++.++|+.+.+.+ ..+..+..++.|+.|+|++|.+. .+|..++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQAL------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred CccceEEeeCCCCC-cchhhH------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence 45777888887776 344333 3333344333321 33555666677777777777665 5666555
Q ss_pred hcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCce
Q 044924 435 VGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKH 514 (740)
Q Consensus 435 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 514 (740)
.+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|+.+++|++|++++|.+. .+|..|+++++|+.
T Consensus 245 -~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 245 -KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320 (727)
T ss_dssp -GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCC
T ss_pred -CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccE
Confidence 4666666666666666 45555666666666666666666 55666666666666666666665 44555666666666
Q ss_pred ecccCCcccCCCchhhhCCCC-CcEEEcccCcCCCCCC
Q 044924 515 IIMPENHLEGPIPMEFCQLYS-LQLLDISDNNISGSLP 551 (740)
Q Consensus 515 L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~ 551 (740)
|+|++|.+++.+|..+..+.. +..+++++|.+.+.+|
T Consensus 321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 666666666655555543211 1224556666555444
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.9e-14 Score=133.42 Aligned_cols=132 Identities=26% Similarity=0.286 Sum_probs=92.8
Q ss_pred CEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcc
Q 044924 489 EGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNM 568 (740)
Q Consensus 489 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 568 (740)
+.++++++.+. .+|..+ .++|+.|++++|.+++..+..|..+++|++|++++|.++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------------- 65 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--------------------- 65 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------------
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce---------------------
Confidence 45555555554 223222 245556666666555444445555666666666666554
Q ss_pred ccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCC
Q 044924 569 LRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIP 647 (740)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 647 (740)
.++...|.++++|++|+|++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus 66 ---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 66 ---SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ---EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 3444447788899999999999998777788899999999999999996666667889999999999999986554
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=8.9e-16 Score=174.16 Aligned_cols=155 Identities=25% Similarity=0.305 Sum_probs=57.8
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEeccCccccc--------ccchhhhhcCCCCcEEeCCCCcccCcCccccCC
Q 044924 389 PSLISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIG--------EIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFN 460 (740)
Q Consensus 389 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 460 (740)
+.++.|.+.++.+.. .+..+ ++.++|+.+.+.+ .++...+..+++|+.|+|++|.+.. ++..+..
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGG
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcC
Confidence 456677777776653 23222 2333333332221 1222223345555555555555542 3333334
Q ss_pred CCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEE
Q 044924 461 LTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLD 540 (740)
Q Consensus 461 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 540 (740)
+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+. .+|..|+++++|++|+|++|.++ .+|..|..+++|++|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 555555555555554 44555555555555555555554 34555555555555555555554 3444455555555555
Q ss_pred cccCcCCCCCCcc
Q 044924 541 ISDNNISGSLPSC 553 (740)
Q Consensus 541 l~~n~l~~~~~~~ 553 (740)
|++|.+.+.+|..
T Consensus 323 L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 323 VEGNPLEKQFLKI 335 (727)
T ss_dssp CTTSCCCSHHHHH
T ss_pred CCCCccCCCChHH
Confidence 5555555444433
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=7.4e-14 Score=147.46 Aligned_cols=309 Identities=15% Similarity=0.165 Sum_probs=205.5
Q ss_pred hccCCCccEEEccCccccCCcchHHhhcCCCCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCcCCCcCchhHhhhCCC
Q 044924 311 LYHQHDLVNVDLSHIKMNGGFPNWLLENNTRLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNNFQGHIPVEIGDILPS 390 (740)
Q Consensus 311 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 390 (740)
+..+.+|+.+.+... + ..+....|.+|++|+.+++.++ +..+...++.++.+|+.+.+..+ +. .+....+..+.
T Consensus 67 F~~c~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~~- 140 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-V-REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGCD- 140 (394)
T ss_dssp TTTCTTEEEEECCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTCC-
T ss_pred hhCCCCceEEEeCCC-c-cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeeccc-
Confidence 445677777777543 2 2455666778888888887654 44444566777777777666543 22 33344443333
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcc
Q 044924 391 LISFNISMNALNGSIPSSFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLE 470 (740)
Q Consensus 391 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 470 (740)
+....+.. ........+|.++.+|+.+.+..+- . .++...|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+.
T Consensus 141 ~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCc-cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 22222222 1222334578888888888887652 2 677777778888888888765 555566778888888888776
Q ss_pred cCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCC
Q 044924 471 SNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSL 550 (740)
Q Consensus 471 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 550 (740)
.+... +...+....+|+.+.+... +.......|.++..++.+.+..+... .....|..+..++.+......+.
T Consensus 217 ~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--- 289 (394)
T 4fs7_A 217 NSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--- 289 (394)
T ss_dssp TTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---
T ss_pred CCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---
Confidence 65433 2333445567888887654 33344556778888888888776443 56667888888888877665432
Q ss_pred Cccc-cccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCC
Q 044924 551 PSCF-HLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGL 629 (740)
Q Consensus 551 ~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 629 (740)
..+| .+.+|+.+.+..+ ++ .++..+|.+|++|+.+++.++ ++.....+|.++++|+.+++..+ ++.....+|.+|
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 2333 3778888888665 33 566667888899999888754 66566778888889999988877 555667788888
Q ss_pred CCCCEEeCCCC
Q 044924 630 NQLQLLDLSNN 640 (740)
Q Consensus 630 ~~L~~L~l~~n 640 (740)
++|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 89998888654
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=6.1e-15 Score=132.46 Aligned_cols=128 Identities=25% Similarity=0.269 Sum_probs=81.3
Q ss_pred CCCCEEEccCCcCC-CCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEec
Q 044924 486 SSLEGLYLNNNSLS-GKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHL 564 (740)
Q Consensus 486 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L 564 (740)
++|+.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~---------------- 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG---------------- 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS----------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc----------------
Confidence 45667777777665 45566666666666666666666644 455566666666666665553
Q ss_pred CCccccccccccccccCCcceEEEccCCcCCCC-CCccccCcCCCcEEEcCCCcCcccCC---ccccCCCCCCEEeCCC
Q 044924 565 SKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGS-IPNWVDGLSQLRHLILGHNNLEGEVP---VQLCGLNQLQLLDLSN 639 (740)
Q Consensus 565 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~ 639 (740)
.+|.. +..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 79 -------~~~~~-~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 79 -------GLEVL-AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -------CTHHH-HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -------hHHHH-hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 23332 55567777777777777643 23567777777777777777775444 3567777777777653
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.5e-14 Score=129.82 Aligned_cols=128 Identities=22% Similarity=0.172 Sum_probs=86.3
Q ss_pred CCCCEEEcccCcCc-ccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEE
Q 044924 462 TNLRWLQLESNHFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLD 540 (740)
Q Consensus 462 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 540 (740)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 45566666677777777777777654 5677777788888888877766777777788888888
Q ss_pred cccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCC---ccccCcCCCcEEEcC
Q 044924 541 ISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIP---NWVDGLSQLRHLILG 614 (740)
Q Consensus 541 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 614 (740)
+++|.+++.. .+. .+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~----------------------~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLS----------------------TIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHH----------------------HHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChH----------------------HHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888766311 011 25666777777777777765544 456777777777765
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=8.9e-14 Score=130.40 Aligned_cols=127 Identities=25% Similarity=0.315 Sum_probs=92.0
Q ss_pred CEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccC
Q 044924 465 RWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDN 544 (740)
Q Consensus 465 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 544 (740)
+.++++++.++ .+|..+. ++|++|++++|.+. .+|..|.++++|+.|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666666 4554432 47788888888776 56677888888888888888888777777888888888888888
Q ss_pred cCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 545 NISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 545 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
.+++. +...|.++++|++|+|++|.+++..+..|..+++|++|+|++|++.
T Consensus 89 ~l~~i------------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCI------------------------PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBC------------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEe------------------------CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77733 3333666777777777777777666666777778888888887775
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.2e-13 Score=127.88 Aligned_cols=132 Identities=21% Similarity=0.263 Sum_probs=92.6
Q ss_pred CCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEccc
Q 044924 464 LRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISD 543 (740)
Q Consensus 464 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 543 (740)
.+.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355666666665 444333 25788888888888766666677888888888888888876666778888888888888
Q ss_pred CcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccC
Q 044924 544 NNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEV 622 (740)
Q Consensus 544 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 622 (740)
|.+++.. ...|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 86 N~l~~~~------------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLP------------------------NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCC------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccC------------------------HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8777332 223556677777777777777655556677777777777777776443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.5e-13 Score=126.01 Aligned_cols=107 Identities=24% Similarity=0.236 Sum_probs=82.2
Q ss_pred cEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCC
Q 044924 537 QLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHN 616 (740)
Q Consensus 537 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 616 (740)
+.+++++|.++..+... ..+|+.|+|++|.+++ ++...|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555555332222 2456666666666664 33334889999999999999999888888999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeCCCCccccCC
Q 044924 617 NLEGEVPVQLCGLNQLQLLDLSNNNLHGHI 646 (740)
Q Consensus 617 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 646 (740)
++++..+..|..+++|++|++++|++.+.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999777778999999999999999998443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.5e-14 Score=128.44 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=84.5
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccE
Q 044924 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQ 561 (740)
Q Consensus 482 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 561 (740)
+..+++|++|++++|.+.. ++......++|+.|++++|.+++. ..|..+++|++|++++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N----------------- 74 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN----------------- 74 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-----------------
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-----------------
Confidence 4455566666666665552 232222222555555555555432 34444455555555554
Q ss_pred EecCCccccccccccccccCCcceEEEccCCcCCCCCCc--cccCcCCCcEEEcCCCcCcccCCcc----ccCCCCCCEE
Q 044924 562 VHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPN--WVDGLSQLRHLILGHNNLEGEVPVQ----LCGLNQLQLL 635 (740)
Q Consensus 562 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L 635 (740)
.++ .++...|..+++|++|+|++|.++ .+|. .+..+++|++|++++|++. .+|.. +..+++|+.|
T Consensus 75 ------~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 75 ------RIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp ------CCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEE
T ss_pred ------ccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcccee
Confidence 444 344444578888888888888886 4554 7788888999999999888 55653 7888899999
Q ss_pred eCCCCccc
Q 044924 636 DLSNNNLH 643 (740)
Q Consensus 636 ~l~~n~~~ 643 (740)
|+++|+..
T Consensus 146 d~~~n~~~ 153 (176)
T 1a9n_A 146 DFQKVKLK 153 (176)
T ss_dssp TTEECCHH
T ss_pred CCCcCCHH
Confidence 99888765
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=2.6e-12 Score=135.58 Aligned_cols=296 Identities=13% Similarity=0.158 Sum_probs=165.1
Q ss_pred hHHhhcCC-CCCEEEecCCCCCCCCCCCCCCCCCccEEEcccCc---CCCcCchhHhhhCCCCcEEEccCCcCCCCCCcc
Q 044924 333 NWLLENNT-RLETLSLVNDSLAGPFRLPIHSHKQLRLLDVSNNN---FQGHIPVEIGDILPSLISFNISMNALNGSIPSS 408 (740)
Q Consensus 333 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 408 (740)
+..|.++. .|+.+.+... ++.+...+|.+|.+|+.+.+..+. ++ .+....|..+.+|+.+.+..+ ++......
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhh
Confidence 33344443 4666666543 444445556666666666665542 33 455555555566666655443 33333445
Q ss_pred ccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCC
Q 044924 409 FGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSL 488 (740)
Q Consensus 409 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 488 (740)
|.++.+|+.+.+..+ ...++...+..+.+|+.+.+..+ ++.+...+|. ...|+.+.+..+... ....+|..+..+
T Consensus 133 F~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhcccccccccce--eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcccc
Confidence 666777777777544 22556666666777777776543 3333344443 345666666544332 444556666666
Q ss_pred CEEEccCCcCCCCCcc-------------cccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc
Q 044924 489 EGLYLNNNSLSGKIPR-------------WLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH 555 (740)
Q Consensus 489 ~~L~l~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 555 (740)
+............... .+.....+..+.+.. .++.....+|.++++|+.+.+.++... ....+|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccc
Confidence 6665544332211000 011122333344332 233344556777777777777654332 3344444
Q ss_pred -ccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCE
Q 044924 556 -LLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQL 634 (740)
Q Consensus 556 -~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 634 (740)
+..|+.+.+.. .++ .++..+|.+|.+|+.+++..+ ++.....+|.+|.+|+++.|..+ ++.....+|.+|++|+.
T Consensus 286 ~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 286 NCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred cccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 66777777753 233 466666777778888777754 55455667777778888877655 44455667777778888
Q ss_pred EeCCCCcc
Q 044924 635 LDLSNNNL 642 (740)
Q Consensus 635 L~l~~n~~ 642 (740)
+++.++..
T Consensus 362 i~~~~~~~ 369 (394)
T 4gt6_A 362 IEYSGSRS 369 (394)
T ss_dssp EEESSCHH
T ss_pred EEECCcee
Confidence 87777644
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.3e-13 Score=125.78 Aligned_cols=134 Identities=17% Similarity=0.117 Sum_probs=85.2
Q ss_pred cCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCc
Q 044924 458 NFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQ 537 (740)
Q Consensus 458 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 537 (740)
+..+.+|+.|++++|.++ .++......++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 344566666666666666 3343222233777777777777643 5677778888888888888755555567788888
Q ss_pred EEEcccCcCCCCCCccccccCccEEecCCccccccccc-cccccCCcceEEEccCCcCCCCCCc----cccCcCCCcEEE
Q 044924 538 LLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKR-GTFFNCSSLVTLDLSYNRLNGSIPN----WVDGLSQLRHLI 612 (740)
Q Consensus 538 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ 612 (740)
+|++++|.+.. ++. ..+..+++|+.|++++|+++ ..|. .+..+++|++|+
T Consensus 92 ~L~L~~N~i~~------------------------~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 92 ELILTNNSLVE------------------------LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp EEECCSCCCCC------------------------GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred EEECCCCcCCc------------------------chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 88888887752 221 12556666677777777666 3344 366677777777
Q ss_pred cCCCcCc
Q 044924 613 LGHNNLE 619 (740)
Q Consensus 613 L~~n~l~ 619 (740)
+++|...
T Consensus 147 ~~~n~~~ 153 (176)
T 1a9n_A 147 FQKVKLK 153 (176)
T ss_dssp TEECCHH
T ss_pred CCcCCHH
Confidence 7776654
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.2e-15 Score=142.47 Aligned_cols=131 Identities=24% Similarity=0.315 Sum_probs=89.5
Q ss_pred cccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccccccCCc
Q 044924 505 WLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGTFFNCSS 583 (740)
Q Consensus 505 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 583 (740)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+.. +|..+. +++|+.|++++|.+++ ++ . +..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-G-IEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-H-HHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-c-cccCCC
Confidence 56666666666666666664 44 66666777777777776663 333333 4667777777776664 44 2 777788
Q ss_pred ceEEEccCCcCCCCCC-ccccCcCCCcEEEcCCCcCcccCCcc----------ccCCCCCCEEeCCCCccc
Q 044924 584 LVTLDLSYNRLNGSIP-NWVDGLSQLRHLILGHNNLEGEVPVQ----------LCGLNQLQLLDLSNNNLH 643 (740)
Q Consensus 584 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~----------~~~l~~L~~L~l~~n~~~ 643 (740)
|++|++++|.+++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888875333 46778888888888888887665543 67788888887 66665
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.2e-12 Score=135.81 Aligned_cols=135 Identities=22% Similarity=0.193 Sum_probs=90.3
Q ss_pred ecccCC-cccCCCchhhhCCCCCcEEEccc-CcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCC
Q 044924 515 IIMPEN-HLEGPIPMEFCQLYSLQLLDISD-NNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYN 592 (740)
Q Consensus 515 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 592 (740)
++.+++ .++ .+|. +..+++|++|+|++ |.+. .++...|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~------------------------~~~~~~~~~l~~L~~L~l~~N 66 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ------------------------HLELRDLRGLGELRNLTIVKS 66 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC------------------------EECGGGSCSCCCCSEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC------------------------CcChhHhccccCCCEEECCCC
Confidence 344444 454 2444 55555566666654 5544 344444888899999999999
Q ss_pred cCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCCCCccccccc
Q 044924 593 RLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSSSLKPFETSL 672 (740)
Q Consensus 593 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (740)
+|++.+|..|.++++|++|+|++|++++..+..|..++ |+.|++.+|++. |+|.+.+|..|.
T Consensus 67 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~-----------------c~c~l~~~~~~~ 128 (347)
T 2ifg_A 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH-----------------CSCALRWLQRWE 128 (347)
T ss_dssp CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC-----------------CCGGGHHHHHHH
T ss_pred ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc-----------------CCCccHHHHHHH
Confidence 99988888899999999999999999866666666665 999999999987 455555555554
Q ss_pred ccccccccccceeEEEecccccc
Q 044924 673 VMESGMIYAEKTVMVLSSSSSLA 695 (740)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~p~~~~ 695 (740)
......+ ....++|..|..+.
T Consensus 129 ~~~~~~l--~~~~~~C~~~~~l~ 149 (347)
T 2ifg_A 129 EEGLGGV--PEQKLQCHGQGPLA 149 (347)
T ss_dssp HTTCSSC--GGGCCCCSSSSCSS
T ss_pred HhCcccc--cccCCCCCCChHHh
Confidence 3322111 23455666666433
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=6.4e-15 Score=139.31 Aligned_cols=133 Identities=22% Similarity=0.202 Sum_probs=81.9
Q ss_pred cccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCcc
Q 044924 481 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIE 560 (740)
Q Consensus 481 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~ 560 (740)
.+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++ +|....+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCC
Confidence 45555566666666665553 34 5555666666666666665 345555555666666666666654 23333356666
Q ss_pred EEecCCccccccccccccccCCcceEEEccCCcCCCCCCc----------cccCcCCCcEEEcCCCcCc
Q 044924 561 QVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPN----------WVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 561 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~n~l~ 619 (740)
.|++++|.+.+..+...+..+++|++|++++|++.+..|. .+..+++|++|+ +|.++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666665322213377788888888888888765554 277788888887 66665
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=4.2e-12 Score=116.63 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=79.1
Q ss_pred cEEEcccCcCCCCCCccccccCccEEecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCC
Q 044924 537 QLLDISDNNISGSLPSCFHLLSIEQVHLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHN 616 (740)
Q Consensus 537 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 616 (740)
+.+++++|.+...++.. ..+|+.|+|++|.+.+..+ ..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455555444222211 1455555555555553333 34889999999999999999877777899999999999999
Q ss_pred cCcccCCccccCCCCCCEEeCCCCccccCC
Q 044924 617 NLEGEVPVQLCGLNQLQLLDLSNNNLHGHI 646 (740)
Q Consensus 617 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 646 (740)
++++..+..|..+++|++|++++|++.+.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999666666999999999999999998443
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=7.6e-11 Score=124.31 Aligned_cols=285 Identities=13% Similarity=0.137 Sum_probs=200.4
Q ss_pred CCCCCCCCC-CccEEEcccCcCCCcCchhHhhhCCCCcEEEccCCc---CCCCCCccccCCCCCcEEeccCcccccccch
Q 044924 356 FRLPIHSHK-QLRLLDVSNNNFQGHIPVEIGDILPSLISFNISMNA---LNGSIPSSFGNINSLQILDLSNNQLIGEIPE 431 (740)
Q Consensus 356 ~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 431 (740)
...+|.++. .|+.+.+... ++ .+....|..+.+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ +. .++.
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~ 130 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDS 130 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECT
T ss_pred CHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehh
Confidence 345666774 5899999764 55 6777777778999999998763 55444567888999998888765 33 6778
Q ss_pred hhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCC
Q 044924 432 HLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKG 511 (740)
Q Consensus 432 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 511 (740)
..+.++.+|+.+.+.. .+..+...+|..+..|+.+.+.++ ++..-..+|. ...|+.+.+..+.. .....+|.++.+
T Consensus 131 ~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTT
T ss_pred hhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccc
Confidence 8888899999999974 445556678888999999999765 4434455565 46799988876533 245567888888
Q ss_pred CceecccCCcccCCCchh-------------hhCCCCCcEEEcccCcCCCCCCcccc-ccCccEEecCCccccccccccc
Q 044924 512 LKHIIMPENHLEGPIPME-------------FCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQVHLSKNMLRGQLKRGT 577 (740)
Q Consensus 512 L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~ 577 (740)
++................ +.....+..+.+... +......+|. +..|+.+.+..+.. .+...+
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~a 283 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV--SIGTGA 283 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC--EECTTT
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc--eecCcc
Confidence 887776654433111111 112233444444332 3333445555 78899999976654 466777
Q ss_pred cccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCccc
Q 044924 578 FFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTT 654 (740)
Q Consensus 578 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 654 (740)
|.+|++|+.+.+. +.++.....+|.++.+|+.++|..+ ++.....+|.+|.+|+.+.|..+ +...-..+|.++.
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 9999999999997 5566677789999999999999876 55467789999999999999765 5534445677654
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.2e-11 Score=113.23 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=69.4
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCc
Q 044924 488 LEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKN 567 (740)
Q Consensus 488 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 567 (740)
.+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------- 67 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-------------------- 67 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------------------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC--------------------
Confidence 345566665555 2343332 55666666666666555666666666666666666655
Q ss_pred cccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 568 MLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 568 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
.++...|..+++|++|+|++|++++..+..|..+++|++|+|++|++.
T Consensus 68 ----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 68 ----VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 344444677788888888888888766777888888888888888876
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.8e-11 Score=112.45 Aligned_cols=104 Identities=24% Similarity=0.315 Sum_probs=68.6
Q ss_pred CEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCccccccCccEEecCCcc
Q 044924 489 EGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFHLLSIEQVHLSKNM 568 (740)
Q Consensus 489 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 568 (740)
+.+++++|.+. .+|..+. ++|+.|++++|.+++..|..|.++++|++|++++|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------------------- 70 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--------------------- 70 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC---------------------
Confidence 45555555554 3344332 55666666666666555556666666666666666555
Q ss_pred ccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 569 LRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
.++...|.++++|++|+|++|++++..+..|..+++|++|+|++|++.
T Consensus 71 ---~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 71 ---AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ---ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 344444677788888888888888666666888888888888888887
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.23 E-value=6.5e-10 Score=116.65 Aligned_cols=163 Identities=10% Similarity=0.094 Sum_probs=104.7
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEcccCcCCCCCCcccc-ccCccEE
Q 044924 484 KCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISDNNISGSLPSCFH-LLSIEQV 562 (740)
Q Consensus 484 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L 562 (740)
.+..+..+.+..... ......+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|. +.+|+.+
T Consensus 192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 344444444433321 133344555666666666543 33344556666667777766554 4434444444 5566666
Q ss_pred ecCCccccccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 044924 563 HLSKNMLRGQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNL 642 (740)
Q Consensus 563 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 642 (740)
.+..+ +. .++..+|.+|++|+.+++.++.++...+.+|.++.+|+.+.|..+ ++.....+|.+|.+|+.+.+..+ +
T Consensus 269 ~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v 344 (379)
T 4h09_A 269 NFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-I 344 (379)
T ss_dssp EECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred ccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-c
Confidence 66543 22 566667899999999999988888777888999999999999765 55466778999999999988655 5
Q ss_pred ccCCCCCCCcc
Q 044924 643 HGHIPPCFDNT 653 (740)
Q Consensus 643 ~~~~p~~~~~~ 653 (740)
...-..+|.++
T Consensus 345 ~~I~~~aF~~c 355 (379)
T 4h09_A 345 TLIESGAFEGS 355 (379)
T ss_dssp CEECTTTTTTS
T ss_pred CEEchhHhhCC
Confidence 54444566654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.6e-12 Score=135.06 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=104.3
Q ss_pred CCCCCEEEcCCCcCCCccChhhhc-----CCCCCcEEeCCCCccCCCcCCccccCCCCCcEEEccCcccCCCcchhhccC
Q 044924 31 LSSLTSLDLSENKLEGSINVKEFD-----SLSNLEELDMSGNEIDNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMG 105 (740)
Q Consensus 31 ~~~L~~L~Ls~~~~~~~i~~~~~~-----~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 105 (740)
.++|++|+|++|.+.. .....+. ..++|++|+|++|.+++.........+++|++|++++|.+++.......
T Consensus 71 ~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~-- 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR-- 147 (372)
T ss_dssp HTTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH--
T ss_pred HhhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH--
Confidence 3567777777777652 2222232 2357777777777776432223333456777888887777542221110
Q ss_pred CCCccceeeecCCccccccccccccC-CCCCCCceeecccchhhcch--hhhHHhhhcCCCceEEeccCCCCCCCcccch
Q 044924 106 SFPSLNTLYLWGNNFTETMTTTTQGF-PHFKSLEHLEMDDARIALNT--SFLQIIGELMPSLKYLSLSYSTPGTNSIEIL 182 (740)
Q Consensus 106 ~~~~l~~l~l~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l 182 (740)
..+ ...++|++|++++|.+...+ .+...+.. +++|++|+|++|..+...+..+
T Consensus 148 -----------------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 148 -----------------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp -----------------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHH
T ss_pred -----------------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHH
Confidence 001 12445666666666332111 22233333 6667777777663333334444
Q ss_pred hhhhcCCCCCcEEeccCCccccC----CChhhhcCCCCcEEEcCCCcccCCCCcccccCc---C--CccEEE--ccCCcc
Q 044924 183 DQGLCSLMHMQELHIAHNDLRGS----LPWCLANMTSLRILDVSSNQLTGSISSSPLIHL---T--SIEELR--LSDNHF 251 (740)
Q Consensus 183 ~~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l---~--~L~~L~--l~~n~~ 251 (740)
+..+...++|++|+|++|.+++. +...+..+++|++|||++|.+.+.... .+..+ . .|+.+. +..+.+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~-~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ-VLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH-HHHHCC------CEEECCCC----C
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH-HHHHHhcCCCccchhhHhhhcCCcc
Confidence 56667777888888888877653 234455678888888888877633221 23222 2 166666 555554
Q ss_pred c
Q 044924 252 R 252 (740)
Q Consensus 252 ~ 252 (740)
.
T Consensus 283 ~ 283 (372)
T 3un9_A 283 S 283 (372)
T ss_dssp H
T ss_pred C
Confidence 4
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.11 E-value=4e-09 Score=110.54 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=63.9
Q ss_pred cccCCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCccccCCCCCCCEEEcccCcCcccCCccccCCCC
Q 044924 408 SFGNINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRNFNLTNLRWLQLESNHFVGEIPQSLSKCSS 487 (740)
Q Consensus 408 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 487 (740)
.+..+..|+.+.+..+ +. .++...+.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|..+++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 4444555555555443 12 344444445555555555443 34344445555555555555432 22233344555555
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhhCCCCCcEEEccc
Q 044924 488 LEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFCQLYSLQLLDISD 543 (740)
Q Consensus 488 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 543 (740)
|+.+.+.++.+..+...+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 555555555444344445555555555555433 3333444555555555555543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.11 E-value=3.6e-12 Score=132.35 Aligned_cols=159 Identities=19% Similarity=0.150 Sum_probs=80.5
Q ss_pred CCCcEEEccCCcCCCCCCccc----c-CCCCCcEEeccCcccccccchhhhhcCCCCcEEeCCCCcccCcCcccc-----
Q 044924 389 PSLISFNISMNALNGSIPSSF----G-NINSLQILDLSNNQLIGEIPEHLAVGCVNLEYLTLSNNNLEGHMFTRN----- 458 (740)
Q Consensus 389 ~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----- 458 (740)
+.++.|++++|.++......+ . ..++|++|++++|.+.......+...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666553222221 1 125666667766665433333333344566666666666654332222
Q ss_pred CCCCCCCEEEcccCcCccc----CCccccCCCCCCEEEccCCcCCCCC----cccccCCCCCceecccCCcccCC----C
Q 044924 459 FNLTNLRWLQLESNHFVGE----IPQSLSKCSSLEGLYLNNNSLSGKI----PRWLGNLKGLKHIIMPENHLEGP----I 526 (740)
Q Consensus 459 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~ 526 (740)
...++|++|++++|.++.. ++..+...++|++|++++|.+.+.. +..+...++|+.|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345566666666665421 2233345556666666666654321 23344455566666666655432 2
Q ss_pred chhhhCCCCCcEEEcccCcCC
Q 044924 527 PMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 527 ~~~~~~l~~L~~L~l~~n~l~ 547 (740)
+..+...++|++|++++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 223334455666666666554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=8.7e-10 Score=114.14 Aligned_cols=103 Identities=21% Similarity=0.136 Sum_probs=57.1
Q ss_pred EEeCCCC-cccCcCccccCCCCCCCEEEccc-CcCcccCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccC
Q 044924 442 YLTLSNN-NLEGHMFTRNFNLTNLRWLQLES-NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPE 519 (740)
Q Consensus 442 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 519 (740)
.++++++ .++. +|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455554 4544 344 55555666666654 555544445555666666666666666555555555566666666666
Q ss_pred CcccCCCchhhhCCCCCcEEEcccCcCC
Q 044924 520 NHLEGPIPMEFCQLYSLQLLDISDNNIS 547 (740)
Q Consensus 520 n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 547 (740)
|++++..+..|..++ |++|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666544444444443 556666555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=2.7e-09 Score=109.59 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=66.4
Q ss_pred CCCCcEEecCCCcCCc--------hhhHhhhcCCCCCEEEcCCCcCC---------CccChhhhcCCCCCcEEeCCCCcc
Q 044924 7 LTNLKMLDLRGNLFNN--------SILSSLAHLSSLTSLDLSENKLE---------GSINVKEFDSLSNLEELDMSGNEI 69 (740)
Q Consensus 7 l~~L~~L~L~~~~~~~--------~~~~~~~~~~~L~~L~Ls~~~~~---------~~i~~~~~~~l~~L~~L~Ls~n~~ 69 (740)
..+++.|.+......+ .+..++.++++|+.|.+...... +.+.. .+..+++|+.|.|+++.-
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCC
Confidence 3456778877555441 23445667889999998765321 12222 567789999999988731
Q ss_pred CCCcCCccccCCCCCcEEEccCcccCCCcchhhccCCCCccceeeecC
Q 044924 70 DNFQVPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWG 117 (740)
Q Consensus 70 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 117 (740)
...+. + .+++|++|++..+.+............+++|++|+++.
T Consensus 185 --l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 185 --LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp --CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred --ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 11333 3 38899999998887765332223233677888887753
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=3.4e-09 Score=108.79 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=29.7
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCceecccCCcccCCCchhhh--CCCCCcEEEcc
Q 044924 482 LSKCSSLEGLYLNNNSLSGKIPRWLGNLKGLKHIIMPENHLEGPIPMEFC--QLYSLQLLDIS 542 (740)
Q Consensus 482 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~ 542 (740)
+..+++|+.|++++|.-. .++. + .+++|+.|++..+.+.......+. .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 344556666666555211 1122 2 256666666666655433333333 56677777664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=3.4e-08 Score=91.37 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=34.1
Q ss_pred hhHhhhcCCCCCEEEcCCC-cCCCc----cChhhhcCCCCCcEEeCCCCccCCCc---CCccccCCCCCcEEEccCcccC
Q 044924 24 ILSSLAHLSSLTSLDLSEN-KLEGS----INVKEFDSLSNLEELDMSGNEIDNFQ---VPQGYGGLRKLKSLHLSRVGIR 95 (740)
Q Consensus 24 ~~~~~~~~~~L~~L~Ls~~-~~~~~----i~~~~~~~l~~L~~L~Ls~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~ 95 (740)
+...+...+.|++|+|++| .+... +. ..+...++|++|+|++|.+.+.. +...+...+.|++|++++|.++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3444455555555555555 44321 11 13344455555555555554321 1233334455556666555554
Q ss_pred C
Q 044924 96 D 96 (740)
Q Consensus 96 ~ 96 (740)
+
T Consensus 107 ~ 107 (185)
T 1io0_A 107 G 107 (185)
T ss_dssp H
T ss_pred H
Confidence 3
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.36 E-value=3.3e-07 Score=78.65 Aligned_cols=95 Identities=21% Similarity=0.173 Sum_probs=76.1
Q ss_pred eEEEccCCcCC-CCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCCCccccCCCCCCCcccccccccCCC
Q 044924 585 VTLDLSYNRLN-GSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSNNNLHGHIPPCFDNTTLHESYSNSS 663 (740)
Q Consensus 585 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~ 663 (740)
..++.+++.++ ..+|..+. ++|++|+|++|+++...+..|..+++|+.|+|++|+|. |+|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~-----------------CdC 71 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR-----------------CDC 71 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB-----------------CSG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee-----------------ccC
Confidence 36788888886 34565454 57999999999999777777899999999999999997 889
Q ss_pred CCcccccccccccccccccceeEEEeccccccccCCC
Q 044924 664 SLKPFETSLVMESGMIYAEKTVMVLSSSSSLATLTLN 700 (740)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 700 (740)
.+.+|..|+........ ...++|.+|+.+.|..+.
T Consensus 72 ~l~~l~~wl~~~~~~~~--~~~~~C~~P~~l~g~~l~ 106 (130)
T 3rfe_A 72 RLVPLRAWLAGRPERAP--YRDLRCVAPPALRGRLLP 106 (130)
T ss_dssp GGHHHHHHHHTSSCSGG--GTTCBCCBSTTTTTCBGG
T ss_pred ccHHHHHHHHhCccccc--ccCcEeCcChHHcCCCcc
Confidence 99889888865443222 346899999999999877
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=4.9e-07 Score=83.47 Aligned_cols=66 Identities=23% Similarity=0.152 Sum_probs=31.6
Q ss_pred CCCceEEeccCCCCCCCcccchhhhhcCCCCCcEEec--cCCccccCC----ChhhhcCCCCcEEEcCCCcc
Q 044924 161 MPSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHI--AHNDLRGSL----PWCLANMTSLRILDVSSNQL 226 (740)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L--~~~~l~~~~----~~~l~~l~~L~~L~L~~n~l 226 (740)
.+.|+.|+|++|..+......+...+...+.|++|+| ++|.+.... ...+...++|++|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3445555554443333333334445555556666666 556554332 22333445555555555544
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=4.2e-07 Score=81.46 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=46.0
Q ss_pred CCcEEecCCCcCCchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCC----CCCcEEeCCCCc-cCCCcCCccccCCCC
Q 044924 9 NLKMLDLRGNLFNNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSL----SNLEELDMSGNE-IDNFQVPQGYGGLRK 83 (740)
Q Consensus 9 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l----~~L~~L~Ls~n~-~~~~~~~~~l~~l~~ 83 (740)
+|++||+++|.++......+.+|++|++|+|++|.-.++-....++.+ ++|++|+|++|. +++. ....+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCCC
Confidence 466666666666655555566666666666666642222222234443 356666666653 5443 2234455666
Q ss_pred CcEEEccCcc
Q 044924 84 LKSLHLSRVG 93 (740)
Q Consensus 84 L~~L~l~~~~ 93 (740)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=3.5e-06 Score=81.65 Aligned_cols=110 Identities=26% Similarity=0.272 Sum_probs=69.3
Q ss_pred ccCCCCCcE--EecCCCcC---CchhhHhhhcCCCCCEEEcCCCcCCC--ccChhhhcCCCCCcEEeCCCCccCCCcCCc
Q 044924 4 LSRLTNLKM--LDLRGNLF---NNSILSSLAHLSSLTSLDLSENKLEG--SINVKEFDSLSNLEELDMSGNEIDNFQVPQ 76 (740)
Q Consensus 4 l~~l~~L~~--L~L~~~~~---~~~~~~~~~~~~~L~~L~Ls~~~~~~--~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 76 (740)
|...+.|+. ++++.|.. ...+......+++|++|+|++|++.+ .++. .+..+++|++|+|++|.+++.....
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhh
Confidence 444455555 66676632 22233333568889999999998875 2332 5678889999999999888652223
Q ss_pred cccCCCCCcEEEccCcccCCCcc---h--hhccCCCCccceeee
Q 044924 77 GYGGLRKLKSLHLSRVGIRDGSK---L--LRSMGSFPSLNTLYL 115 (740)
Q Consensus 77 ~l~~l~~L~~L~l~~~~~~~~~~---~--~~~~~~~~~l~~l~l 115 (740)
.+..+ +|++|++++|.+....+ . ...+..+++|+.|+-
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 33334 88999999888765221 1 123446777777664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.03 E-value=1.1e-06 Score=85.15 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=53.7
Q ss_pred cCCCCCcEEeCCCCccCCCc-CCccccCCCCCcEEEccCcccCCCcchhhccCCCCccceeeecCCcccccccc----cc
Q 044924 54 DSLSNLEELDMSGNEIDNFQ-VPQGYGGLRKLKSLHLSRVGIRDGSKLLRSMGSFPSLNTLYLWGNNFTETMTT----TT 128 (740)
Q Consensus 54 ~~l~~L~~L~Ls~n~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~----~~ 128 (740)
.++++|++|+|++|.+++.. ++..+..+++|++|+|++|++.+.. ....+..+ +|++|.+.+|........ ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 46777888888888777632 3455567778888888888777642 22333334 777778777776532110 01
Q ss_pred ccCCCCCCCceeecc
Q 044924 129 QGFPHFKSLEHLEMD 143 (740)
Q Consensus 129 ~~l~~l~~L~~L~l~ 143 (740)
..+..+++|+.||-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 235567777777644
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=7.3e-06 Score=73.38 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=48.3
Q ss_pred CCCcEEeccCCccccCCChhhhcCCCCcEEEcCCCc-ccCCCCcccccCc----CCccEEEccCCcccccCCccccccCC
Q 044924 190 MHMQELHIAHNDLRGSLPWCLANMTSLRILDVSSNQ-LTGSISSSPLIHL----TSIEELRLSDNHFRIPISLEPLFNHS 264 (740)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l----~~L~~L~l~~n~~~~~~~~~~l~~l~ 264 (740)
.+|++|++++|.+++.....+..+++|++|+|++|. +++. -...++.+ ++|++|++++|.-.+......+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 356777777776665555556666777777777764 3311 11123332 35777777776522233444556667
Q ss_pred ccceeeccCCc
Q 044924 265 RLQIFDAYNNE 275 (740)
Q Consensus 265 ~L~~L~l~~~~ 275 (740)
+|+.|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.78 E-value=0.00051 Score=62.67 Aligned_cols=123 Identities=9% Similarity=0.028 Sum_probs=59.5
Q ss_pred hHhhhcCCCCCEEEcCCC-cCCCc---cChhhhcCCCCCcEEeCCCCccCCCc---CCccccCCCCCcEEEccCcccCCC
Q 044924 25 LSSLAHLSSLTSLDLSEN-KLEGS---INVKEFDSLSNLEELDMSGNEIDNFQ---VPQGYGGLRKLKSLHLSRVGIRDG 97 (740)
Q Consensus 25 ~~~~~~~~~L~~L~Ls~~-~~~~~---i~~~~~~~l~~L~~L~Ls~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 97 (740)
...+..-+.|++|+|+++ .+... .-...+..-+.|+.|+|++|.+.+.. +.+++..-+.|++|+|++|.+.+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 333444455666666654 44311 00113344455666666666555331 223333445666666666665543
Q ss_pred cchh--hccCCCCccceeeecCCcc---cccc-ccccccCCCCCCCceeecccchh
Q 044924 98 SKLL--RSMGSFPSLNTLYLWGNNF---TETM-TTTTQGFPHFKSLEHLEMDDARI 147 (740)
Q Consensus 98 ~~~~--~~~~~~~~l~~l~l~~~~~---~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 147 (740)
.... ..+.....+++|.+.++.. -... ......+..-+.|+.|+++.+.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2221 2444555566666654311 1100 00113345567888888887743
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.53 E-value=0.0016 Score=59.33 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=16.6
Q ss_pred CCceEEeccCCCCCCCcccchhhhhcCCCCCcEEeccC
Q 044924 162 PSLKYLSLSYSTPGTNSIEILDQGLCSLMHMQELHIAH 199 (740)
Q Consensus 162 ~~L~~L~L~~~~~~~~~l~~l~~~~~~l~~L~~L~L~~ 199 (740)
+.|+.|+|+.|..+......+.+.+..-..|++|+|++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34444444444333333333334444444455555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.14 E-value=0.0083 Score=50.96 Aligned_cols=56 Identities=29% Similarity=0.317 Sum_probs=38.9
Q ss_pred EEecCCcccc-ccccccccccCCcceEEEccCCcCCCCCCccccCcCCCcEEEcCCCcCc
Q 044924 561 QVHLSKNMLR-GQLKRGTFFNCSSLVTLDLSYNRLNGSIPNWVDGLSQLRHLILGHNNLE 619 (740)
Q Consensus 561 ~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 619 (740)
.++-+++.++ ..+|.. +. ++|+.|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444444443 234433 21 46888899999888777778888888999999998875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.31 E-value=2.5 Score=33.38 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=19.4
Q ss_pred CchhhHhhhcCCCCCEEEcCCCcCCCccChhhhcCCCCCcEEeCCC
Q 044924 21 NNSILSSLAHLSSLTSLDLSENKLEGSINVKEFDSLSNLEELDMSG 66 (740)
Q Consensus 21 ~~~~~~~~~~~~~L~~L~Ls~~~~~~~i~~~~~~~l~~L~~L~Ls~ 66 (740)
+.+-..+|.+|++|+.+.|..+- + .|...+|.+|.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~v-~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPNI-G-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTTS-S-CCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCch-h-eEcHHHHhccCCccEEEEcC
Confidence 33334445555555555554432 1 23444444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.30 E-value=8.5 Score=30.28 Aligned_cols=44 Identities=18% Similarity=0.109 Sum_probs=21.3
Q ss_pred CCCCCccccCcCCCcEEEcCCCcCcccCCccccCCCCCCEEeCCC
Q 044924 595 NGSIPNWVDGLSQLRHLILGHNNLEGEVPVQLCGLNQLQLLDLSN 639 (740)
Q Consensus 595 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 639 (740)
+......|.++++|+.+.|..+--. .....|.+|.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 3334444555555555555544222 4444555555555555543
Done!