BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044925
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1JE24|ARGC_PSEPW N-acetyl-gamma-glutamyl-phosphate reductase OS=Pseudomonas putida
(strain W619) GN=argC PE=3 SV=1
Length = 344
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAH 60
F PH T + + + + +K L LFEKR ADE +++V G+H
Sbjct: 231 FVPHLTPMIRGIHSTLYATVADKSVDLQALFEKRYADEPFVDVMPAGSH 279
>sp|P90703|RLA2_BRUMA 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1
Length = 114
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 59 AHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD 103
A ++ AP V+++ + E KE KEESD+DMG LFD
Sbjct: 70 AAVSAIAPVVSATPTDALQAGSKKGETKEGPKEESDEDMGFGLFD 114
>sp|A1RQQ2|PURL_PYRIL Phosphoribosylformylglycinamidine synthase 2 OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=purL PE=3
SV=1
Length = 693
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 28 FTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKE 87
FT P +AT + + E + + Y+ G ++ VA SGLGG+A A+ E E
Sbjct: 160 FTYTPIVLATCVGVVEAEAVPKGYVEPGD---YIVVAGLGADRSGLGGSAFASKTLEGGE 216
Query: 88 ETK--EESDDDMGLSLFD 103
+ + +D MG L D
Sbjct: 217 DLGAIQVADPLMGKKLID 234
>sp|O44010|RLA2_LEIBR 60S acidic ribosomal protein P2 OS=Leishmania braziliensis GN=LIP2
PE=1 SV=1
Length = 105
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 85 KKEETKEESDDDMGLSLFD 103
KKE ++EE+DDDMG LFD
Sbjct: 87 KKEASEEEADDDMGFGLFD 105
>sp|Q8LCW9|RLA11_ARATH 60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A
PE=1 SV=2
Length = 112
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 40 KLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGL 99
K+ EKR+ +L +NVG+GG A A A ++G G AA AA E+KK+E EESD D+G
Sbjct: 49 KMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGF 108
Query: 100 SLFD 103
LFD
Sbjct: 109 GLFD 112
>sp|O23095|RLA12_ARATH 60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B
PE=1 SV=2
Length = 113
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 40 KLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAV-EEKKEETKEESDDDMG 98
K+ EKR+ +L +NVG+GG A A + GGAA AA EEKK+E EESD D+G
Sbjct: 49 KMAEKRNVTDLIMNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLG 108
Query: 99 LSLFD 103
LFD
Sbjct: 109 FGLFD 113
>sp|O86352|PKKB_MYCTU Putative phosphofructokinase PfkB OS=Mycobacterium tuberculosis
GN=pfkB PE=1 SV=1
Length = 339
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 30 SQPEKIATLIKLFEKRSADELYLNVGSGGAHLAV--------AAPAVASSGLG-GAALAA 80
++PE++A +L ++ A+ + +++GS GA LA + P A SG+G G A+ A
Sbjct: 210 TEPEQLAAAHELIDRGRAEVVVVSLGSQGALLATRHASHRFSSIPMTAVSGVGAGDAMVA 269
Query: 81 AV 82
A+
Sbjct: 270 AI 271
>sp|P41095|RLA0_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica
GN=Os08g0130500 PE=1 SV=3
Length = 319
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 59 AHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD 103
+ AVAAP A SG A AA EEKKEE +EESD D+G+SLFD
Sbjct: 276 SKFAVAAPVAADSG-AAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319
>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1
Length = 110
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 83 EEKKEETKEESDDDMGLSLFD 103
E+K E EESDDDMG LFD
Sbjct: 90 EDKPAEKDEESDDDMGFGLFD 110
>sp|B5BJR2|THIE_SALPK Thiamine-phosphate synthase OS=Salmonella paratyphi A (strain
AKU_12601) GN=thiE PE=3 SV=1
Length = 211
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 30 SQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEE 84
S P+ +A L++ E R AD Y V GG L APAV ++G+G A+ +A+ +
Sbjct: 141 SAPQGLAQLVRHIE-RLAD--YPTVAIGGISLE-HAPAVLATGVGSIAVVSAITQ 191
>sp|Q5PKA7|THIE_SALPA Thiamine-phosphate synthase OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=thiE PE=3 SV=1
Length = 211
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 30 SQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEE 84
S P+ +A L++ E R AD Y V GG L APAV ++G+G A+ +A+ +
Sbjct: 141 SAPQGLAQLVRHIE-RLAD--YPTVAIGGISLE-HAPAVLATGVGSIAVVSAITQ 191
>sp|A4WMV7|PURL_PYRAR Phosphoribosylformylglycinamidine synthase 2 OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=purL PE=3
SV=1
Length = 697
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 28 FTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKE 87
FT P +AT + + EK + G + VA SGLGG+A A+ +
Sbjct: 160 FTYTPIVLATCVGVVEKGKVPPGGVETGD---LIVVAGLGADKSGLGGSAFAS------K 210
Query: 88 ETKEESDDDMG 98
+EES++D+G
Sbjct: 211 TLREESEEDLG 221
>sp|Q8LEQ0|RLA13_ARATH 60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C
PE=1 SV=2
Length = 113
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 40 KLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEE-KKEETKEESDDDMG 98
K+ EKR+ +L +NVG+GG A A A ++G G AA A A EE KK+E EESD D+G
Sbjct: 49 KMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLG 108
Query: 99 LSLFD 103
LFD
Sbjct: 109 FGLFD 113
>sp|B1YBM5|PURL_PYRNV Phosphoribosylformylglycinamidine synthase 2 OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=purL PE=3 SV=1
Length = 693
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 28 FTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKE 87
FT P +AT + + E A+ + + G +L VA SGLGG+A A+ E E
Sbjct: 160 FTYTPIVLATCVGVVE---AEAVPRGGVAPGDYLVVAGLGADRSGLGGSAFASKTLEGGE 216
Query: 88 E--TKEESDDDMGLSLFD 103
+ + +D MG L D
Sbjct: 217 DLGAVQVADPLMGKKLID 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,157,124
Number of Sequences: 539616
Number of extensions: 1358900
Number of successful extensions: 7224
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6738
Number of HSP's gapped (non-prelim): 201
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)