Query 044925
Match_columns 103
No_of_seqs 114 out of 923
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_t 60S acidic ribosomal pr 99.9 5.3E-29 1.8E-33 173.1 3.8 92 10-103 19-110 (110)
2 3izc_t 60S acidic ribosomal pr 99.9 5.4E-28 1.8E-32 167.1 4.4 89 10-103 18-106 (106)
3 3iz5_v 60S acidic ribosomal pr 99.9 1.1E-27 3.6E-32 167.3 4.4 90 12-103 17-113 (113)
4 3izc_v 60S acidic ribosomal pr 99.9 5.8E-27 2E-31 161.9 4.7 86 10-103 14-106 (106)
5 2lbf_A 60S acidic ribosomal pr 99.2 6.5E-12 2.2E-16 80.6 3.8 49 10-59 20-68 (69)
6 3iz5_s 60S acidic ribosomal pr 99.2 1.5E-12 5E-17 103.4 0.0 56 43-103 264-319 (319)
7 2zkr_g 60S acidic ribosomal pr 99.1 3.5E-13 1.2E-17 106.9 -5.8 59 41-103 259-317 (317)
8 3u5i_q A0, L10E, 60S acidic ri 99.1 5.8E-12 2E-16 99.7 0.0 54 43-103 259-312 (312)
9 2lbf_B 60S acidic ribosomal pr 99.0 2.5E-10 8.4E-15 73.5 4.0 43 10-53 15-58 (70)
10 3a1y_A 50S ribosomal protein P 99.0 5.9E-10 2E-14 69.2 4.9 45 9-54 13-57 (58)
11 3iz5_t 60S acidic ribosomal pr 97.0 0.00032 1.1E-08 48.2 2.2 26 21-48 14-39 (110)
12 3izc_t 60S acidic ribosomal pr 96.8 0.0011 3.9E-08 45.1 3.6 28 20-49 12-39 (106)
13 3iz5_v 60S acidic ribosomal pr 95.4 0.004 1.4E-07 42.9 0.9 24 25-49 13-36 (113)
14 3izc_v 60S acidic ribosomal pr 93.3 0.026 8.7E-07 38.4 1.2 26 22-49 10-35 (106)
15 3iz5_s 60S acidic ribosomal pr 69.3 1.4 4.7E-05 34.6 0.9 7 13-19 209-215 (319)
16 2keb_A DNA polymerase subunit 64.9 5.7 0.00019 26.7 3.1 40 11-51 24-65 (101)
17 1avs_A Troponin C; muscle cont 62.6 6.5 0.00022 23.1 2.9 30 12-42 36-65 (90)
18 2lv7_A Calcium-binding protein 62.3 3.3 0.00011 26.1 1.5 30 12-42 52-81 (100)
19 2ktg_A Calmodulin, putative; e 60.2 6.5 0.00022 22.6 2.5 30 12-42 30-59 (85)
20 2kn2_A Calmodulin; S MAPK phos 59.9 7.8 0.00027 22.7 2.9 30 12-42 25-54 (92)
21 1tiz_A Calmodulin-related prot 59.6 7.6 0.00026 21.0 2.6 30 12-42 17-46 (67)
22 1s6j_A CDPK, calcium-dependent 59.4 7.2 0.00025 22.5 2.6 30 12-42 39-68 (87)
23 2b1u_A Calmodulin-like protein 58.7 6.9 0.00024 21.6 2.4 31 11-42 21-51 (71)
24 1j7q_A CAVP, calcium vector pr 57.7 9.5 0.00032 22.1 3.0 30 12-42 30-62 (86)
25 2joj_A Centrin protein; N-term 57.3 6.2 0.00021 22.2 2.0 30 12-42 23-52 (77)
26 3i5g_C Myosin catalytic light 57.2 7.1 0.00024 26.0 2.6 42 12-54 101-149 (159)
27 3i5g_B Myosin regulatory light 56.1 7 0.00024 25.9 2.4 30 12-42 101-130 (153)
28 2kz2_A Calmodulin, CAM; TR2C, 55.6 11 0.00037 22.8 3.1 30 12-42 45-74 (94)
29 2mys_C Myosin; muscle protein, 54.1 20 0.00067 22.1 4.2 41 11-52 23-70 (149)
30 4e2i_2 DNA polymerase alpha su 51.9 11 0.00038 24.1 2.7 39 13-52 3-43 (78)
31 3j04_B Myosin regulatory light 51.4 14 0.0005 22.7 3.2 31 11-42 91-121 (143)
32 2qac_A Myosin A tail domain in 50.5 12 0.00043 23.3 2.8 30 12-42 100-129 (146)
33 2lmt_A Calmodulin-related prot 49.0 13 0.00043 23.8 2.7 30 12-42 99-128 (148)
34 2ovk_B RLC, myosin regulatory 48.6 17 0.00057 22.9 3.2 41 11-52 31-72 (153)
35 1wlz_A DJBP, CAP-binding prote 46.3 13 0.00044 22.4 2.3 43 11-54 39-86 (105)
36 2lhi_A Calmodulin, serine/thre 46.2 19 0.00066 24.2 3.4 43 12-55 100-146 (176)
37 2ovk_B RLC, myosin regulatory 46.2 17 0.00058 22.8 3.0 31 11-42 100-130 (153)
38 3rm1_A Protein S100-B; alpha-h 45.8 21 0.00072 21.5 3.3 30 12-42 27-61 (92)
39 1x5s_A Cold-inducible RNA-bind 45.5 41 0.0014 20.1 4.6 47 2-48 13-80 (102)
40 3li6_A Calcium-binding protein 45.2 12 0.0004 20.3 1.8 31 11-42 15-45 (66)
41 2ek1_A RNA-binding protein 12; 44.8 31 0.0011 20.3 3.9 46 3-48 17-83 (95)
42 1ggw_A Protein (CDC4P); light 44.7 16 0.00055 22.5 2.7 30 12-42 92-121 (140)
43 2obh_A Centrin-2; DNA repair c 44.5 21 0.00072 22.5 3.2 30 12-42 95-124 (143)
44 2lkz_A RNA-binding protein 5; 43.9 15 0.00051 22.9 2.4 27 1-27 9-35 (95)
45 2pvb_A Protein (parvalbumin); 43.6 24 0.00084 21.0 3.3 31 11-42 56-89 (108)
46 1k2h_A S100A1, S-100 protein, 43.2 20 0.00069 20.8 2.8 40 12-52 27-76 (93)
47 1pva_A Parvalbumin; calcium bi 42.3 26 0.0009 20.9 3.3 31 11-42 57-90 (110)
48 3i5g_C Myosin catalytic light 41.7 8.4 0.00029 25.7 1.0 28 12-40 27-54 (159)
49 2d58_A Allograft inflammatory 41.6 19 0.00066 21.8 2.6 30 12-42 48-77 (107)
50 1k94_A Grancalcin; penta-EF-ha 41.5 27 0.00092 22.3 3.4 30 12-42 86-115 (165)
51 3h4s_E KCBP interacting Ca2+-b 41.5 28 0.00097 22.1 3.5 41 11-52 55-101 (135)
52 3fs7_A Parvalbumin, thymic; ca 41.3 26 0.0009 20.9 3.2 31 11-42 57-90 (109)
53 2lxi_A RNA-binding protein 10; 41.2 17 0.00059 22.0 2.3 25 2-26 2-26 (91)
54 2ovk_C Myosin catalytic light 41.1 19 0.00064 22.8 2.6 29 12-41 101-129 (159)
55 4ds7_A Calmodulin, CAM; protei 41.1 23 0.00078 21.7 2.9 32 11-43 99-130 (147)
56 2zkr_g 60S acidic ribosomal pr 41.0 3.2 0.00011 32.5 -1.5 8 89-96 300-307 (317)
57 1exr_A Calmodulin; high resolu 40.6 26 0.00091 21.9 3.2 30 12-42 99-128 (148)
58 3fwb_A Cell division control p 40.6 20 0.00067 22.5 2.6 31 11-42 111-141 (161)
59 2ftc_E L12MT, MRP-L12, 39S rib 40.4 27 0.00092 24.4 3.4 17 34-50 2-18 (137)
60 2dgu_A Heterogeneous nuclear r 40.4 26 0.00088 21.3 3.1 47 2-48 12-71 (103)
61 2obh_A Centrin-2; DNA repair c 40.0 23 0.00078 22.3 2.8 30 12-42 22-51 (143)
62 2cpz_A CUG triplet repeat RNA- 39.9 42 0.0014 20.7 4.1 46 3-48 27-93 (115)
63 1qx2_A Vitamin D-dependent cal 39.7 7.2 0.00025 21.8 0.3 30 12-42 23-54 (76)
64 4f25_A Polyadenylate-binding p 39.7 36 0.0012 21.3 3.8 44 5-48 9-71 (115)
65 2dnq_A RNA-binding protein 4B; 39.2 50 0.0017 19.3 4.2 47 2-48 9-68 (90)
66 2bl0_C Myosin regulatory light 38.7 23 0.00078 21.8 2.6 31 12-43 95-125 (142)
67 2dnp_A RNA-binding protein 14; 38.7 38 0.0013 19.9 3.6 46 3-48 11-69 (90)
68 2jjz_A Ionized calcium-binding 38.4 29 0.00099 22.6 3.2 30 12-42 66-95 (150)
69 3qrx_A Centrin; calcium-bindin 38.0 30 0.001 21.9 3.2 31 11-42 116-146 (169)
70 2ki2_A SS-DNA binding protein 37.9 15 0.00052 21.6 1.6 26 1-26 1-26 (90)
71 1k9u_A Polcalcin PHL P 7; poll 37.2 23 0.0008 19.8 2.3 30 11-42 18-47 (78)
72 1wdc_B Scallop myosin; calcium 37.1 21 0.00071 22.5 2.3 30 12-42 103-132 (156)
73 2cpe_A RNA-binding protein EWS 36.8 50 0.0017 20.2 4.0 46 3-48 17-91 (113)
74 1why_A Hypothetical protein ri 36.8 52 0.0018 19.5 4.0 46 3-48 19-79 (97)
75 3beg_B Splicing factor, argini 36.8 45 0.0015 20.9 3.9 46 4-49 19-78 (115)
76 2e5j_A Methenyltetrahydrofolat 36.7 67 0.0023 19.1 4.6 45 3-47 21-81 (97)
77 2la6_A RNA-binding protein FUS 36.7 45 0.0015 19.9 3.8 26 3-28 15-40 (99)
78 5pal_A Parvalbumin; calcium-bi 36.7 25 0.00087 21.0 2.6 30 12-42 57-89 (109)
79 2bl0_B Myosin regulatory light 36.4 27 0.00091 21.4 2.7 39 12-52 21-62 (145)
80 1wy9_A Allograft inflammatory 36.1 25 0.00085 22.9 2.6 30 12-42 64-93 (147)
81 2jnf_A Troponin C; stretch act 36.0 26 0.00089 21.9 2.6 41 11-52 29-74 (158)
82 2cpj_A Non-POU domain-containi 35.7 47 0.0016 19.8 3.7 46 3-48 17-77 (99)
83 1top_A Troponin C; contractIle 35.7 35 0.0012 21.2 3.2 30 12-42 112-141 (162)
84 1rro_A RAT oncomodulin; calciu 35.5 34 0.0012 20.3 3.0 30 12-42 57-89 (108)
85 3ox6_A Calcium-binding protein 35.5 37 0.0013 20.7 3.3 41 11-52 26-71 (153)
86 2dnh_A Bruno-like 5, RNA bindi 35.2 72 0.0024 19.1 4.6 46 3-48 17-82 (105)
87 1dtl_A Cardiac troponin C; hel 35.0 37 0.0013 21.2 3.2 31 11-42 34-64 (161)
88 2dgt_A RNA-binding protein 30; 34.9 43 0.0015 19.7 3.4 46 3-48 12-70 (92)
89 1rwy_A Parvalbumin alpha; EF-h 34.7 29 0.00098 20.6 2.6 30 12-42 57-89 (109)
90 2mys_B Myosin; muscle protein, 34.4 36 0.0012 21.6 3.1 39 12-51 41-81 (166)
91 1m45_A MLC1P, myosin light cha 34.3 28 0.00096 21.5 2.6 30 12-42 20-49 (148)
92 1juo_A Sorcin; calcium-binding 34.0 33 0.0011 22.8 3.0 30 12-42 119-148 (198)
93 2opo_A Polcalcin CHE A 3; calc 33.8 29 0.001 19.8 2.4 29 12-42 27-55 (86)
94 2la4_A Nuclear and cytoplasmic 33.8 60 0.0021 19.3 4.0 46 3-48 29-89 (101)
95 1w7j_B Myosin light chain 1; m 33.1 20 0.00068 22.3 1.7 30 12-42 103-132 (151)
96 1gjy_A Sorcin, CP-22, V19; cal 33.1 33 0.0011 22.0 2.8 30 12-42 88-117 (167)
97 1k8u_A S100A6, calcyclin, CACY 32.6 23 0.0008 20.3 1.8 30 12-42 28-60 (90)
98 3ex7_B RNA-binding protein 8A; 32.6 70 0.0024 19.8 4.3 46 3-48 24-90 (126)
99 1wdc_C Scallop myosin; calcium 32.3 27 0.00092 21.9 2.2 29 12-41 100-128 (156)
100 2cqp_A RNA-binding protein 12; 31.8 59 0.002 19.2 3.7 46 3-48 17-83 (98)
101 2f2o_A Calmodulin fused with c 31.8 43 0.0015 21.4 3.2 30 12-42 27-56 (179)
102 1bu3_A Calcium-binding protein 31.7 30 0.001 20.6 2.3 30 12-42 58-90 (109)
103 1qv0_A Obelin, OBL; photoprote 31.6 30 0.001 22.5 2.4 30 12-42 129-158 (195)
104 2dgv_A HnRNP M, heterogeneous 30.9 80 0.0027 18.3 4.4 46 3-48 10-74 (92)
105 3i5g_B Myosin regulatory light 30.9 40 0.0014 22.1 3.0 30 12-42 32-61 (153)
106 2cpd_A Apobec-1 stimulating pr 30.4 55 0.0019 19.5 3.4 47 2-48 16-77 (99)
107 3mdf_A Peptidyl-prolyl CIS-tra 30.3 36 0.0012 19.5 2.4 25 2-26 8-32 (85)
108 1alv_A Calpain, S-camld; calci 30.1 55 0.0019 21.0 3.6 32 11-43 92-123 (173)
109 2lhi_A Calmodulin, serine/thre 30.0 30 0.001 23.2 2.3 30 12-42 27-56 (176)
110 2kxn_B Transformer-2 protein h 30.0 65 0.0022 20.7 3.9 46 3-48 48-114 (129)
111 1uhk_A Aequorin 2, aequorin; E 29.8 33 0.0011 22.1 2.4 30 12-42 125-154 (191)
112 1whx_A Hypothetical protein ri 29.8 75 0.0026 19.7 4.1 46 3-48 12-72 (111)
113 2aao_A CDPK, calcium-dependent 29.4 58 0.002 20.4 3.5 40 12-52 43-87 (166)
114 1h2v_Z 20 kDa nuclear CAP bind 29.3 67 0.0023 20.9 3.9 47 3-49 41-108 (156)
115 1c7v_A CAVP, calcium vector pr 28.6 45 0.0015 18.7 2.6 31 12-42 24-54 (81)
116 1x4g_A Nucleolysin TIAR; struc 28.3 73 0.0025 19.3 3.8 46 3-48 27-87 (109)
117 2i7a_A Calpain 13; calcium-dep 27.8 48 0.0016 22.3 3.0 31 12-43 91-125 (174)
118 3lgb_A DNA primase large subun 27.6 49 0.0017 24.3 3.2 35 11-48 119-153 (194)
119 1taf_B TFIID TBP associated fa 27.2 61 0.0021 19.9 3.1 31 11-42 5-36 (70)
120 3dtp_E RLC, myosin regulatory 26.7 48 0.0016 22.1 2.8 41 11-52 72-113 (196)
121 2xnq_A Nuclear polyadenylated 26.7 1E+02 0.0035 18.5 4.2 46 2-47 23-82 (97)
122 2kld_A Polycystin-2; PC2, PKD2 26.7 41 0.0014 21.5 2.4 29 11-42 61-89 (123)
123 3e3r_A Calcyphosin, calcyphosi 26.1 61 0.0021 21.1 3.2 41 11-52 52-97 (204)
124 1y1x_A Leishmania major homolo 26.0 61 0.0021 21.4 3.3 30 12-42 109-138 (191)
125 2div_A TRNA selenocysteine ass 25.8 41 0.0014 20.0 2.2 26 2-27 10-35 (99)
126 2y5i_A S100Z, S100 calcium bin 25.6 58 0.002 20.0 2.9 40 12-52 28-77 (99)
127 2kii_A Putative uncharacterize 25.4 25 0.00085 24.6 1.2 46 6-52 10-67 (181)
128 2cqc_A Arginine/serine-rich sp 25.2 43 0.0015 19.6 2.1 24 3-26 17-40 (95)
129 3s8s_A Histone-lysine N-methyl 25.2 92 0.0031 19.4 3.9 47 2-48 7-74 (110)
130 3sjs_A URE3-BP sequence specif 25.1 49 0.0017 22.8 2.7 32 11-43 132-163 (220)
131 3s7r_A Heterogeneous nuclear r 24.8 45 0.0015 19.3 2.2 24 3-26 13-36 (87)
132 3u0k_A Rcamp; fluorescent prot 24.8 47 0.0016 27.2 2.9 31 11-42 317-347 (440)
133 2jvo_A Nucleolar protein 3; nu 24.8 95 0.0033 19.1 3.9 46 3-48 33-91 (108)
134 3ucg_A Polyadenylate-binding p 24.5 52 0.0018 18.9 2.4 24 3-26 8-31 (89)
135 2e5h_A Zinc finger CCHC-type a 24.5 40 0.0014 19.8 1.9 24 3-26 18-41 (94)
136 3bs9_A Nucleolysin TIA-1 isofo 24.0 54 0.0018 18.8 2.4 24 3-26 8-31 (87)
137 2znd_A Programmed cell death p 23.7 62 0.0021 20.7 2.9 30 12-42 90-119 (172)
138 2ywk_A Putative RNA-binding pr 23.2 59 0.002 19.0 2.5 24 3-26 18-41 (95)
139 2e5g_A U6 snRNA-specific termi 23.2 60 0.002 19.2 2.5 46 2-48 9-70 (94)
140 1x5t_A Splicing factor 3B subu 22.3 58 0.002 19.1 2.3 26 2-27 6-31 (96)
141 2lnk_A Protein S100-A4; EF-han 22.2 53 0.0018 21.2 2.3 40 12-52 40-89 (113)
142 2dnz_A Probable RNA-binding pr 22.2 53 0.0018 19.2 2.1 46 3-48 7-73 (95)
143 1s6i_A CDPK, calcium-dependent 22.1 56 0.0019 21.7 2.4 41 11-52 25-70 (188)
144 3md3_A Nuclear and cytoplasmic 22.1 52 0.0018 20.7 2.2 47 2-48 1-67 (166)
145 1uaw_A Mouse-musashi-1; RNP-ty 21.9 50 0.0017 18.5 1.9 22 5-26 4-25 (77)
146 1taf_A TFIID TBP associated fa 21.8 64 0.0022 19.7 2.4 25 17-42 6-31 (68)
147 2cqb_A Peptidyl-prolyl CIS-tra 21.7 51 0.0017 19.7 2.0 47 2-48 13-80 (102)
148 2kvi_A Nuclear polyadenylated 21.5 1.3E+02 0.0046 17.6 4.6 46 3-48 12-71 (96)
149 2x1f_A MRNA 3'-END-processing 21.3 57 0.002 19.3 2.2 47 2-48 3-70 (96)
150 2khc_A Testis-specific RNP-typ 21.2 53 0.0018 20.2 2.1 24 3-26 42-65 (118)
151 1p1t_A Cleavage stimulation fa 21.2 54 0.0018 19.6 2.0 46 2-47 9-75 (104)
152 2dgo_A Cytotoxic granule-assoc 21.2 63 0.0021 19.7 2.4 46 3-48 17-83 (115)
153 3md1_A Nuclear and cytoplasmic 21.1 50 0.0017 18.8 1.8 22 5-26 5-26 (83)
154 1x4a_A Splicing factor, argini 21.0 64 0.0022 19.5 2.4 46 3-48 24-87 (109)
155 2dnm_A SRP46 splicing factor; 21.0 62 0.0021 19.3 2.3 26 2-27 14-39 (103)
156 2do4_A Squamous cell carcinoma 20.7 54 0.0019 19.5 2.0 24 3-26 19-42 (100)
157 3r27_A HnRNP L, heterogeneous 20.6 64 0.0022 20.6 2.4 27 2-28 22-48 (100)
158 2cqd_A RNA-binding region cont 20.5 62 0.0021 19.8 2.3 26 2-27 18-43 (116)
159 3u0k_A Rcamp; fluorescent prot 20.5 61 0.0021 26.6 2.7 30 12-42 391-420 (440)
160 1iqt_A AUF1, heterogeneous nuc 20.5 47 0.0016 18.5 1.6 22 5-26 3-24 (75)
161 4a8x_A RNA-binding protein wit 20.5 53 0.0018 18.8 1.8 24 4-27 7-30 (88)
162 2pmy_A RAS and EF-hand domain- 20.4 73 0.0025 18.6 2.5 28 12-42 43-70 (91)
163 2dgp_A Bruno-like 4, RNA bindi 20.3 57 0.0019 19.6 2.0 45 3-47 15-80 (106)
164 2cqh_A IGF-II mRNA-binding pro 20.3 62 0.0021 18.9 2.2 46 3-48 10-71 (93)
165 2mss_A Protein (musashi1); RNA 20.3 55 0.0019 18.3 1.8 22 5-26 3-24 (75)
166 2cq3_A RNA-binding protein 9; 20.2 68 0.0023 19.1 2.4 46 3-48 17-81 (103)
167 2cpf_A RNA binding motif prote 20.1 58 0.002 19.2 2.0 46 3-48 7-76 (98)
168 1p27_B RNA-binding protein 8A; 20.1 69 0.0024 19.2 2.4 24 3-26 25-48 (106)
No 1
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=99.95 E-value=5.3e-29 Score=173.13 Aligned_cols=92 Identities=46% Similarity=0.540 Sum_probs=43.7
Q ss_pred cccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCCCCcccccccccccccCCCCccchhhhhhhhccc
Q 044925 10 QIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEET 89 (103)
Q Consensus 10 ~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee~keee 89 (103)
++.+|+++|++||+++| |+++..+++.++++|+||||++||+|+++||+++++++++++ +++++++++++++++|+|+
T Consensus 19 ~~~itad~I~~ilkAaG-veVe~~~~~lfakaL~gknI~eLI~sv~~gg~a~~a~a~~a~-~~~~~~~a~~~~~e~k~ee 96 (110)
T 3iz5_t 19 GIPITSEKIATVVKAAG-IKVEAYWPALFAKLLEKRSVDDLILSVGSGGGGAPAAAAAAP-AAGGAAAAEEKKEEKKEEA 96 (110)
T ss_dssp TCCCSHHHHHHHHHHHT-CCCCSHHHHHHHHHHTTCCHHHHHTCCC----------------------------------
T ss_pred CCCcChHHHHHHHHHhC-CcccHHHHHHHHHHcCCCCHHHHHhcCCCccccccccccccc-cccccccccchhhhhcccc
Confidence 57899999999999999 999999999999999999999999999988765443322211 0111112233445566678
Q ss_pred ccccccCCCCCCCC
Q 044925 90 KEESDDDMGLSLFD 103 (103)
Q Consensus 90 eEE~ddDmGFgLFD 103 (103)
+|||||||||||||
T Consensus 97 ~EEsddDmGfgLFd 110 (110)
T 3iz5_t 97 KEESDDDMGFSLFD 110 (110)
T ss_dssp --------------
T ss_pred ccccccccccccCC
Confidence 88999999999998
No 2
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=99.94 E-value=5.4e-28 Score=167.07 Aligned_cols=89 Identities=31% Similarity=0.382 Sum_probs=43.5
Q ss_pred cccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCCCCcccccccccccccCCCCccchhhhhhhhccc
Q 044925 10 QIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEET 89 (103)
Q Consensus 10 ~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee~keee 89 (103)
++.+|+++|++||+++| |+++..+++.++++|+||||++||+++++||++++++++++ +++++++++++++|+|+
T Consensus 18 ~~~~tad~I~~ilkAaG-veVe~~~~~lfa~aL~gknI~eLI~~~~ag~~~~aa~a~~a----~~~~~a~~~~~~~kee~ 92 (106)
T 3izc_t 18 EIEISSEKLLTLTNAAN-VPDENIWADIFAKALDGQNLKDLLVNFSAGAAAPAGVAGGV----AGGEAGEAEAEKEEEEA 92 (106)
T ss_dssp TCCCSHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCHHHHTTCCC----------------------------------
T ss_pred CCCCCHHHHHHHHHHcC-CcccHHHHHHHHHHhcCCCHHHHHHhccCcCcccccccccc----cccccccchhhhhhccc
Confidence 56799999999999999 99999999999999999999999999988776543222111 11112233445566678
Q ss_pred ccccccCCCCCCCC
Q 044925 90 KEESDDDMGLSLFD 103 (103)
Q Consensus 90 eEE~ddDmGFgLFD 103 (103)
+|||||||||||||
T Consensus 93 ~EEsddDmGfgLFd 106 (106)
T 3izc_t 93 KEESDDDMGFGLFD 106 (106)
T ss_dssp --------------
T ss_pred ccccccccccCcCC
Confidence 88999999999998
No 3
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=99.94 E-value=1.1e-27 Score=167.30 Aligned_cols=90 Identities=37% Similarity=0.428 Sum_probs=38.8
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhh-------hcCCCCcccccccccccccCCCCccchhhhhh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYL-------NVGSGGAHLAVAAPAVASSGLGGAALAAAVEE 84 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa-------~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee 84 (103)
.+|+++|++||+++| |+++..+++.+++.|+||||++||+ |+++||+++++++++++ ++++++++++++++
T Consensus 17 ~ptad~I~~ILkAaG-veVe~~~~~lf~~aL~gk~I~eLIa~G~~kl~~v~~gg~aa~a~a~a~a-~~~~a~~a~~~~~e 94 (113)
T 3iz5_v 17 SPSAEDLTSILESVG-CEIDNEKMELMLSQVKGKDITELLAAGREKFAAVPSGGGGVAVSAAAPA-AGGAAAPAAESKKE 94 (113)
T ss_dssp CCTTTTHHHHHHHHT-CCCCHHHHHHHHHHHTTCCHHHHHHSCC------------------------------------
T ss_pred CCCHHHHHHHHHHcC-CCcCHHHHHHHHHHhcCCCHHHHHHhhHHHhccCCCccccccccccccc-ccccccccchhhhh
Confidence 489999999999999 9999999999999999999999996 78887765433221111 11111112334455
Q ss_pred hhcccccccccCCCCCCCC
Q 044925 85 KKEETKEESDDDMGLSLFD 103 (103)
Q Consensus 85 ~keeeeEE~ddDmGFgLFD 103 (103)
+|+|++|||||||||||||
T Consensus 95 ~k~ee~EEsDdDmGFgLFD 113 (113)
T 3iz5_v 95 EKVVEKEESDDDMGFSLFD 113 (113)
T ss_dssp -------------------
T ss_pred hhcccccccccccccCcCC
Confidence 6667888899999999998
No 4
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=99.93 E-value=5.8e-27 Score=161.87 Aligned_cols=86 Identities=40% Similarity=0.459 Sum_probs=40.7
Q ss_pred cccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhh-------hcCCCCcccccccccccccCCCCccchhhh
Q 044925 10 QIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYL-------NVGSGGAHLAVAAPAVASSGLGGAALAAAV 82 (103)
Q Consensus 10 ~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa-------~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ 82 (103)
++.+|.++|++||+++| |+++..+++.+++.|+||||++||+ ++++||+++++++ ++ +++ +++++
T Consensus 14 G~e~tad~I~~ilkAaG-veVe~~~~~~f~~aL~gkdI~eLIa~g~~klasv~sgg~a~aa~a-~~----a~~--~~~~~ 85 (106)
T 3izc_v 14 GNTPDATKIKAILESVG-IEIEDEKVSSVLSALEGKSVDELITEGNEKLAAVPAAGPASAGGA-AA----ASG--DAAAE 85 (106)
T ss_dssp TCCCTTTTHHHHHHHHT-CCCCHHHHHHHHHHHTTCCHHHHHHSCC----------------------------------
T ss_pred CCCCCHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCCHHHHHHhhhHHhccCCCccccccccc-cc----ccc--ccccc
Confidence 67799999999999999 9999999999999999999999997 7777766543321 11 111 22344
Q ss_pred hhhhcccccccccCCCCCCCC
Q 044925 83 EEKKEETKEESDDDMGLSLFD 103 (103)
Q Consensus 83 ee~keeeeEE~ddDmGFgLFD 103 (103)
+++|+|++|||||||||||||
T Consensus 86 ~e~kee~~EEsdddmGfgLFd 106 (106)
T 3izc_v 86 EEKEEEAAEESDDDMGFGLFD 106 (106)
T ss_dssp ---------------------
T ss_pred cccccccccccccccCCCCCC
Confidence 556667888999999999998
No 5
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=99.22 E-value=6.5e-12 Score=80.59 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=46.3
Q ss_pred cccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCCCCc
Q 044925 10 QIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGA 59 (103)
Q Consensus 10 ~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~agg~ 59 (103)
++.+|+++|+++|+++| ++++..+++.++++|+||||++||.|+++||+
T Consensus 20 g~~~ta~~I~~il~AaG-veve~~~~~lf~~aL~gk~I~elI~~~g~g~~ 68 (69)
T 2lbf_A 20 EVTVTEDKINALIKAAG-VNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68 (69)
T ss_dssp TCCCCHHHHHHHHHHHT-CCCCTHHHHHHHHHTTTSCGGGGGTTTTCCCC
T ss_pred CCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHCCCCHHHHHHhccCCCC
Confidence 67999999999999999 99999999999999999999999999987754
No 6
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=99.20 E-value=1.5e-12 Score=103.37 Aligned_cols=56 Identities=41% Similarity=0.454 Sum_probs=0.0
Q ss_pred cCCChHHHhhhcCCCCcccccccccccccCCCCccchhhhhhhhcccccccccCCCCCCCC
Q 044925 43 EKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD 103 (103)
Q Consensus 43 ~gk~I~eLIa~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee~keeeeEE~ddDmGFgLFD 103 (103)
.-++|+++|+++++++++++++++++ ++++++++++++++|++|||||||||||||
T Consensus 264 ~~e~ik~~l~~p~~~a~aa~~a~~~~-----~~~~~~~~~~~~~~e~~ee~d~d~gf~lfd 319 (319)
T 3iz5_s 264 HADKIKEYLKDPSKFAVAAPVAADSG-----AAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319 (319)
T ss_dssp -------------------------------------------------------------
T ss_pred CchhHHHHHhhhhhhccccccccccc-----cccccccccccccccccccccccCCCCCCC
Confidence 34688999999998766554332211 111112234455567788899999999998
No 7
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.15 E-value=3.5e-13 Score=106.86 Aligned_cols=59 Identities=32% Similarity=0.352 Sum_probs=26.5
Q ss_pred HhcCCChHHHhhhcCCCCcccccccccccccCCCCccchhhhhhhhcccccccccCCCCCCCC
Q 044925 41 LFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD 103 (103)
Q Consensus 41 aL~gk~I~eLIa~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee~keeeeEE~ddDmGFgLFD 103 (103)
+-++++|+++|.++++++++++++++++ +++++++++++++++||+|||||||||||||
T Consensus 259 ~~ea~~vk~~l~~~~~~~~a~a~~a~~~----~~~~~~~~~~~~~~~ee~ee~d~d~gf~lfd 317 (317)
T 2zkr_g 259 FPLAEKVKAFLADPSAFVAAAPVAAATT----AAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317 (317)
T ss_dssp --CHHHHHTTTHHHHHHHHHHHHHTTSS----HHHHHHHHHHSTTHHHHTSSCC---------
T ss_pred hhhhhhHHHHHhccCccccccccccccc----cccccccccccccccCCccccccccCcCCCC
Confidence 3357888999999987754421111110 1111122234455566778899999999998
No 8
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=99.12 E-value=5.8e-12 Score=99.70 Aligned_cols=54 Identities=39% Similarity=0.406 Sum_probs=0.0
Q ss_pred cCCChHHHhhhcCCCCcccccccccccccCCCCccchhhhhhhhcccccccccCCCCCCCC
Q 044925 43 EKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD 103 (103)
Q Consensus 43 ~gk~I~eLIa~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee~keeeeEE~ddDmGFgLFD 103 (103)
.-.+|+++|+++++++++++++++++ + +++++++++++|++|||||||||||||
T Consensus 259 ~~~~ik~~la~p~a~a~aa~~a~~~~------~-~~~~~~~~~~~e~~ee~d~d~gf~lfd 312 (312)
T 3u5i_q 259 EIEDLVDRIENPEKYAAAAPAATSAA------S-GDAAPAEEAAAEEEEESDDDMGFGLFD 312 (312)
T ss_dssp -------------------------------------------------------------
T ss_pred cchhHHHHHhChhhhhcccccccccc------c-ccccccccccccccccccccCCCCCCC
Confidence 46778899999998766544432211 1 112233445567778899999999998
No 9
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=99.00 E-value=2.5e-10 Score=73.51 Aligned_cols=43 Identities=7% Similarity=0.115 Sum_probs=40.9
Q ss_pred cc-cCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhh
Q 044925 10 QI-FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLN 53 (103)
Q Consensus 10 ~~-~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~ 53 (103)
++ .+|+++|+++|+++| |+++.++++.++++|+||||++||++
T Consensus 15 g~~~~ta~~I~~il~aaG-vevd~~~~~~~~~aL~gk~i~elIa~ 58 (70)
T 2lbf_B 15 GNSSPSAKDIKKILDSVG-IEADDDRLNKVISELNGKNIEDVIAQ 58 (70)
T ss_dssp TCSSCCHHHHHHHHHTTT-CCCCTTHHHHHHHHHSSCCHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcCCCHHHHHHH
Confidence 55 899999999999999 99999999999999999999999964
No 10
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=98.98 E-value=5.9e-10 Score=69.16 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=42.5
Q ss_pred ccccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhc
Q 044925 9 VQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNV 54 (103)
Q Consensus 9 ~~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v 54 (103)
.++.+|+++|+++|+++| ++++..++..++++|+||||++||+++
T Consensus 13 ~g~~~t~~~I~~il~aaG-veve~~~~~~~~~~L~gk~i~elI~~~ 57 (58)
T 3a1y_A 13 VGKEINEENLKAVLQAAG-VEPEEARIKALVAALEGVNIDEVIEKA 57 (58)
T ss_dssp TTCCCCHHHHHHHHHHTT-CCCCHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHCCCCHHHHHHcc
Confidence 357999999999999999 999999999999999999999999865
No 11
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=96.97 E-value=0.00032 Score=48.21 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=21.1
Q ss_pred hhhhcccccccHHHHHHHHHHhcCCChH
Q 044925 21 GLVEFSFFTSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 21 ~l~~~g~vevdaekI~~li~aL~gk~I~ 48 (103)
||..-| ++|++++|++||+.- |.+++
T Consensus 14 iL~d~~-~~itad~I~~ilkAa-GveVe 39 (110)
T 3iz5_t 14 ILHDDG-IPITSEKIATVVKAA-GIKVE 39 (110)
T ss_dssp HHHHHT-CCCSHHHHHHHHHHH-TCCCC
T ss_pred HHcCCC-CCcChHHHHHHHHHh-CCccc
Confidence 677778 999999999999975 44554
No 12
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=96.75 E-value=0.0011 Score=45.11 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=22.3
Q ss_pred hhhhhcccccccHHHHHHHHHHhcCCChHH
Q 044925 20 SGLVEFSFFTSQPEKIATLIKLFEKRSADE 49 (103)
Q Consensus 20 ~~l~~~g~vevdaekI~~li~aL~gk~I~e 49 (103)
-||..-| ++|++++|++||+.. |.+++.
T Consensus 12 LiL~d~~-~~~tad~I~~ilkAa-GveVe~ 39 (106)
T 3izc_t 12 LILADSE-IEISSEKLLTLTNAA-NVPDEN 39 (106)
T ss_dssp HHHHHHT-CCCSHHHHHHHHHHH-TCCCCH
T ss_pred HHHcCCC-CCCCHHHHHHHHHHc-CCcccH
Confidence 3677778 999999999999976 556654
No 13
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=95.40 E-value=0.004 Score=42.89 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=17.5
Q ss_pred cccccccHHHHHHHHHHhcCCChHH
Q 044925 25 FSFFTSQPEKIATLIKLFEKRSADE 49 (103)
Q Consensus 25 ~g~vevdaekI~~li~aL~gk~I~e 49 (103)
-|.-.+++++|++||+.. |.+++.
T Consensus 13 ~G~~~ptad~I~~ILkAa-GveVe~ 36 (113)
T 3iz5_v 13 SGNASPSAEDLTSILESV-GCEIDN 36 (113)
T ss_dssp HTCCCCTTTTHHHHHHHH-TCCCCH
T ss_pred cCCCCCCHHHHHHHHHHc-CCCcCH
Confidence 354569999999999975 555553
No 14
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=93.35 E-value=0.026 Score=38.35 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.6
Q ss_pred hhhcccccccHHHHHHHHHHhcCCChHH
Q 044925 22 LVEFSFFTSQPEKIATLIKLFEKRSADE 49 (103)
Q Consensus 22 l~~~g~vevdaekI~~li~aL~gk~I~e 49 (103)
|.-.| .+|++++|++||++. |.+++.
T Consensus 10 ~~~gG-~e~tad~I~~ilkAa-GveVe~ 35 (106)
T 3izc_v 10 LNAAG-NTPDATKIKAILESV-GIEIED 35 (106)
T ss_dssp HHHHT-CCCTTTTHHHHHHHH-TCCCCH
T ss_pred HHhcC-CCCCHHHHHHHHHHc-CCCcCH
Confidence 34456 889999999999976 556654
No 15
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=69.29 E-value=1.4 Score=34.60 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=3.5
Q ss_pred CCchhhH
Q 044925 13 WPHNTID 19 (103)
Q Consensus 13 ~~~~~i~ 19 (103)
||++++.
T Consensus 209 i~~e~~~ 215 (319)
T 3iz5_s 209 LTEDDLM 215 (319)
T ss_dssp CCCHHHH
T ss_pred CCHHHHH
Confidence 4555543
No 16
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=64.91 E-value=5.7 Score=26.75 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=32.6
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh--cCCChHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF--EKRSADELY 51 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL--~gk~I~eLI 51 (103)
.-|+.+.|.+=+..+| |+++.+-|++++..+ -+.+-.++.
T Consensus 24 ~~Vsae~L~eEfdefG-i~~~d~VldKc~ELC~~y~lda~e~V 65 (101)
T 2keb_A 24 MSASAQQLAEELQIFG-LDCEEALIEKLVELCVQYGQNEEGMV 65 (101)
T ss_dssp CCCCHHHHHHHHHHHT-CBCCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hhccHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 4589999999999999 999999999999955 455545544
No 17
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=62.57 E-value=6.5 Score=23.11 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=27.4
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++..+|..+| ..++.+.+..++..+
T Consensus 36 ~i~~~el~~~l~~~g-~~~~~~~~~~l~~~~ 65 (90)
T 1avs_A 36 DISTKELGTVMRMLG-QNPTKEELDAIIEEV 65 (90)
T ss_dssp EECHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 588999999999999 899999999999977
No 18
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=62.28 E-value=3.3 Score=26.14 Aligned_cols=30 Identities=7% Similarity=0.339 Sum_probs=25.2
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.++++++|..+| ..++.+.|+.+++.+
T Consensus 52 ~I~~~El~~~l~~lg-~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 52 FISKQELGTAMRSLG-YMPNEVELEVIIQRL 81 (100)
T ss_dssp CBCHHHHHHHHHHHT-CCCCTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 578888899999998 888888888888866
No 19
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=60.18 E-value=6.5 Score=22.64 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=27.3
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 30 ~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 59 (85)
T 2ktg_A 30 KLTAEELGTVMRALG-ANPTKQKISEIVKDY 59 (85)
T ss_dssp EEEHHHHHHHHHTTS-SCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 588899999999999 899999999999977
No 20
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=59.87 E-value=7.8 Score=22.71 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=27.9
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 25 ~i~~~el~~~l~~~g-~~~~~~~~~~l~~~~ 54 (92)
T 2kn2_A 25 YISASELRHVMINLG-EKLTDEEVEQMIKEA 54 (92)
T ss_dssp EECHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred eEcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 589999999999999 999999999999977
No 21
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=59.61 E-value=7.6 Score=21.04 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=27.4
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 17 ~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 17 KLSLDEFREVALAFS-PYFTQEDIVKFFEEI 46 (67)
T ss_dssp CEEHHHHHHHHHHTC-TTSCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 588999999999999 999999999999877
No 22
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=59.43 E-value=7.2 Score=22.55 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=27.1
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 39 ~i~~~el~~~l~~~~-~~~~~~~~~~l~~~~ 68 (87)
T 1s6j_A 39 TITFDELKDGLKRVG-SELMESEIKDLMDAA 68 (87)
T ss_dssp CEEHHHHHHHHHTTT-SSCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 578899999999999 899999999999877
No 23
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=58.66 E-value=6.9 Score=21.55 Aligned_cols=31 Identities=6% Similarity=0.093 Sum_probs=27.5
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 21 G~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~ 51 (71)
T 2b1u_A 21 GHITVDELRRAMAGLG-QPLPQEELDAMIREA 51 (71)
T ss_dssp SEEEHHHHHHHGGGTT-CSSCHHHHHHHHHHC
T ss_pred CcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 3588899999999999 899999999998876
No 24
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=57.75 E-value=9.5 Score=22.09 Aligned_cols=30 Identities=13% Similarity=-0.017 Sum_probs=26.0
Q ss_pred cCCchhhHhhhhhcccccccHHH---HHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEK---IATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaek---I~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+. +..++..+
T Consensus 30 ~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~~~~ 62 (86)
T 1j7q_A 30 IAPVSDTMDMLTKLG-QTYTKRETEAIMKEARGP 62 (86)
T ss_dssp CBCHHHHHHHHHHTS-CCCSHHHHHHHHHHHHCS
T ss_pred cCcHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHh
Confidence 688999999999999 8889888 88888755
No 25
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=57.34 E-value=6.2 Score=22.21 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=27.2
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 23 ~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 52 (77)
T 2joj_A 23 SIDYHELKVAMRALG-FDVKKPEILELMNEY 52 (77)
T ss_dssp EEEHHHHHHHHHHHT-CCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 588899999999999 899999999999876
No 26
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=57.17 E-value=7.1 Score=26.04 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=33.8
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHhc---C----CChHHHhhhc
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE---K----RSADELYLNV 54 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~---g----k~I~eLIa~v 54 (103)
.|+.++++++|..+| ..++.+.|+.+++.+. . .+..+.+.-+
T Consensus 101 ~I~~~el~~~l~~~g-~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m 149 (159)
T 3i5g_C 101 LISSAEIRNVLKMLG-ERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKV 149 (159)
T ss_dssp EECHHHHHHHHHHSS-SCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHH
Confidence 689999999999999 9999999999999763 1 2456666543
No 27
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=56.10 E-value=7 Score=25.90 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.5
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.++++++|..+| ..++.+.|+.+++.+
T Consensus 101 ~I~~~el~~~l~~~g-~~ls~~ei~~~~~~~ 130 (153)
T 3i5g_B 101 FIPEDYLKDLLENMG-DNFSKEEIKNVWKDA 130 (153)
T ss_dssp CCCHHHHHHHHHSSS-SCCCHHHHHHHHTTC
T ss_pred eEeHHHHHHHHHHcC-CcCCHHHHHHHHHHh
Confidence 689999999999999 899999999888754
No 28
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=55.62 E-value=11 Score=22.80 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=27.3
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..+++.+
T Consensus 45 ~I~~~El~~~l~~~g-~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 45 YISAAELRHVMTNLG-EKLTDEEVDEMIREA 74 (94)
T ss_dssp CBCHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 589999999999999 889999999999877
No 29
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=54.07 E-value=20 Score=22.06 Aligned_cols=41 Identities=5% Similarity=-0.036 Sum_probs=33.1
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh-------cCCChHHHhh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF-------EKRSADELYL 52 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL-------~gk~I~eLIa 52 (103)
-.|+.+++..+|..+| ..++.+.+..+++.+ ...+..+++.
T Consensus 23 G~i~~~el~~~l~~~~-~~~~~~~~~~l~~~~~~~d~~~g~i~~~eF~~ 70 (149)
T 2mys_C 23 AKITASQVGDIARALG-QNPTNAEINKILGNPSKEEMNAAAITFEEFLP 70 (149)
T ss_pred CcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhhhccccCCcCcHHHHHH
Confidence 3589999999999999 899999999999877 2345566654
No 30
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=51.91 E-value=11 Score=24.11 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=32.2
Q ss_pred CCchhhHhhhhhcccccccHHHHHHHHHHh--cCCChHHHhh
Q 044925 13 WPHNTIDSGLVEFSFFTSQPEKIATLIKLF--EKRSADELYL 52 (103)
Q Consensus 13 ~~~~~i~~~l~~~g~vevdaekI~~li~aL--~gk~I~eLIa 52 (103)
|+.+.|..=|..+| |+++.+-|++++..+ -+++-.++..
T Consensus 3 vs~e~l~~el~~Fg-i~c~d~v~eKl~ElC~~y~~~~~e~V~ 43 (78)
T 4e2i_2 3 ASAQQLAEELQIFG-LDCEEALIEKLVELCVQYGQNEEGMVG 43 (78)
T ss_dssp CCHHHHHHHHHHTT-CCCCHHHHHHHHTHHHHSCCCHHHHHH
T ss_pred cCHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 78899999999999 999999999999954 5666555553
No 31
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=51.43 E-value=14 Score=22.75 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=28.3
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+| ..++.+.++.+++.+
T Consensus 91 G~I~~~El~~~l~~~g-~~~~~~~~~~~~~~~ 121 (143)
T 3j04_B 91 GFIHEDHLRELLTTMG-DRFTDEEVDEMYREA 121 (143)
T ss_dssp CCCCTTTHHHHHHTSS-SCCCHHHHHHHHHHT
T ss_pred CeEcHHHHHHHHHHcC-CCCCHHHHHHHHHHc
Confidence 3689999999999999 999999999999977
No 32
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=50.47 E-value=12 Score=23.30 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=27.0
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.++.+++.+
T Consensus 100 ~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 100 YLTKSQMKNILTTWG-DALTDQEAIDALNAF 129 (146)
T ss_dssp EEEHHHHHHHHHHSS-SCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-CCCCHHHHHHHHHHc
Confidence 588999999999999 899999999999877
No 33
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=49.00 E-value=13 Score=23.84 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=26.7
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.++++++|..+| ..++.+.++.+++.+
T Consensus 99 ~I~~~El~~~l~~~g-~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 99 FISPAELRFVMINLG-EKVTDEEIDEMIREA 128 (148)
T ss_dssp EECHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHcC-ccccHHHHHHHHHHh
Confidence 588899999999999 899999999998866
No 34
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=48.61 E-value=17 Score=22.87 Aligned_cols=41 Identities=5% Similarity=0.056 Sum_probs=33.6
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhcC-CChHHHhh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEK-RSADELYL 52 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~g-k~I~eLIa 52 (103)
-.|+.+++.++|..+| ..++.+.+..++..+.| .+..+.+.
T Consensus 31 G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~~g~i~~~eF~~ 72 (153)
T 2ovk_B 31 GFIGMEDLKDMFSSLG-RVPPDDELNAMLKECPGQLNFTAFLT 72 (153)
T ss_dssp TCCCHHHHHHHTTTTT-SCCCHHHHHHHHHHSSSCCCSHHHHH
T ss_pred CeECHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 3689999999999999 89999999999987743 34556664
No 35
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=46.25 E-value=13 Score=22.36 Aligned_cols=43 Identities=5% Similarity=-0.103 Sum_probs=34.5
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhc-----CCChHHHhhhc
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE-----KRSADELYLNV 54 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~-----gk~I~eLIa~v 54 (103)
-.|+.+++..+|..+| ..++.+.+..++..+. ..+..+++.-+
T Consensus 39 G~i~~~el~~~l~~~g-~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~ 86 (105)
T 1wlz_A 39 NTISREEFRAICNRRV-QILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF 86 (105)
T ss_dssp SCBCHHHHHHHHHHHT-CCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHH
Confidence 3689999999999999 8999999999998663 14566777544
No 36
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.24 E-value=19 Score=24.18 Aligned_cols=43 Identities=2% Similarity=0.054 Sum_probs=34.5
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHhcC----CChHHHhhhcC
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEK----RSADELYLNVG 55 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~g----k~I~eLIa~v~ 55 (103)
.|+.++++++|..+| ..++.+.|+.++..+.. .++.|.+.-+.
T Consensus 100 ~I~~~el~~~l~~~g-~~~~~~ei~~l~~~~dd~dG~I~~~EF~~~m~ 146 (176)
T 2lhi_A 100 LISAAELKHVLTSIG-EKLTDAEVDDMLREVSDGSGEINIQQFAALLS 146 (176)
T ss_dssp SBCHHHHHHHHHTTT-CCCCHHHHHHHHHHHHTTSSCBCTTHHHHHHT
T ss_pred cCcHHHHHHHHHHcC-cccchHHHHHHHHhhcCCCCeEeHHHHHHHHH
Confidence 689999999999999 99999999999997632 34567665443
No 37
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=46.17 E-value=17 Score=22.85 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=27.6
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+| ..++.+.++.+++.+
T Consensus 100 G~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 130 (153)
T 2ovk_B 100 GFIPEDYLKDLLENMG-DNFSKEEIKNVWKDA 130 (153)
T ss_dssp SCCCHHHHHHHHHHSS-SCCCHHHHHHHHHHC
T ss_pred CeEcHHHHHHHHHHcC-CCCCHHHHHHHHHHc
Confidence 3689999999999999 899999999999876
No 38
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=45.83 E-value=21 Score=21.50 Aligned_cols=30 Identities=3% Similarity=0.088 Sum_probs=27.9
Q ss_pred cCCchhhHhhhhh-----cccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVE-----FSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~-----~g~vevdaekI~~li~aL 42 (103)
.|+.++++++|.. +| ..++.+.++.+++.+
T Consensus 27 ~Is~~EL~~~l~~~~~~~lg-~~~~~~~v~~~~~~~ 61 (92)
T 3rm1_A 27 KLKKSELKELINNELSHFLE-EIKEQEVVDKVMETL 61 (92)
T ss_dssp SBCHHHHHHHHHHHCTTTSC-CCCSHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHHhhhhcc-CcccHHHHHHHHHHH
Confidence 8999999999999 99 889999999999977
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.47 E-value=41 Score=20.10 Aligned_cols=47 Identities=4% Similarity=0.105 Sum_probs=35.1
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
|.-|+..+-..+++++|..++..+|-| .-+.+.....+..|.|..|.
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345777888899999999999887633 23567777788888887664
No 40
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=45.16 E-value=12 Score=20.31 Aligned_cols=31 Identities=3% Similarity=-0.085 Sum_probs=27.5
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+| ..++.+.+..+++.+
T Consensus 15 G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 45 (66)
T 3li6_A 15 GAVSYEEVKAFVSKKR-AIKNEQLLQLIFKSI 45 (66)
T ss_dssp SSCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHcc-CCCcHHHHHHHHHHH
Confidence 3689999999999999 888999999999876
No 41
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=44.85 E-value=31 Score=20.33 Aligned_cols=46 Identities=7% Similarity=0.072 Sum_probs=33.2
Q ss_pred eeeeecccccCCchhhHhhhhhccccc---------------------ccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFFT---------------------SQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~ve---------------------vdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|++.+...|.|. .+.+...+.+..|.|+.|.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 17 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 457777888999999999999887432 2456666777777776553
No 42
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=44.73 E-value=16 Score=22.50 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=25.9
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..+++.+
T Consensus 92 ~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 121 (140)
T 1ggw_A 92 MIGVGELRYVLTSLG-EKLSNEEMDELLKGV 121 (140)
T ss_dssp CCCHHHHHHHHHHHH-SCSCHHHHHHHHHHT
T ss_pred cEeHHHHHHHHHHcC-CCCCHHHHHHHHHhc
Confidence 588889999999999 888888888888866
No 43
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=44.52 E-value=21 Score=22.46 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=26.8
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.++++++|..+| ..++.+.+..+++.+
T Consensus 95 ~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 124 (143)
T 2obh_A 95 KISFKNLKRVAKELG-ENLTDEELQEMIDEA 124 (143)
T ss_dssp SBCHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 588999999999999 889999999999876
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=43.91 E-value=15 Score=22.92 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=21.1
Q ss_pred CceeeeecccccCCchhhHhhhhhccc
Q 044925 1 MRVQYMDTVQIFWPHNTIDSGLVEFSF 27 (103)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~~l~~~g~ 27 (103)
|.--|+..+-..+|+++|.+.++.+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~ 35 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYAS 35 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCC
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCC
Confidence 344566777888999999999998883
No 45
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=43.62 E-value=24 Score=21.00 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=27.5
Q ss_pred ccCCchhhHhhhhhc---ccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEF---SFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~---g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+ | ..++.+.+..+++.+
T Consensus 56 G~I~~~el~~~l~~~~~~g-~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 56 GFIEEDELKLFLQNFSPSA-RALTDAETKAFLADG 89 (108)
T ss_dssp SSBCHHHHHTGGGGTCTTS-CCCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhccC-CCCCHHHHHHHHHHh
Confidence 368999999999999 7 889999999999877
No 46
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=43.21 E-value=20 Score=20.83 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=32.2
Q ss_pred cCCchhhHhhhhh-----cccccccHHHHHHHHHHhc-----CCChHHHhh
Q 044925 12 FWPHNTIDSGLVE-----FSFFTSQPEKIATLIKLFE-----KRSADELYL 52 (103)
Q Consensus 12 ~~~~~~i~~~l~~-----~g~vevdaekI~~li~aL~-----gk~I~eLIa 52 (103)
.|+.+++.++|.. +| ..++.+.+..+++.+. ..+..+.+.
T Consensus 27 ~I~~~el~~~l~~~~~~~~g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~ 76 (93)
T 1k2h_A 27 KLSKKELKDLLQTELSSFLD-VQKDADAVDKIMKELDENGDGEVDFQEFVV 76 (93)
T ss_dssp SCCHHHHHHHHHHHTHHHHH-CCCCHHHHHHHHHHHHHCTTSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 7999999999998 99 8999999999998662 145556553
No 47
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=42.30 E-value=26 Score=20.86 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=27.3
Q ss_pred ccCCchhhHhhhhhc---ccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEF---SFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~---g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+ | ..++.+.+..++..+
T Consensus 57 G~I~~~el~~~l~~~~~~g-~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 57 GFIEEEELKFVLKSFAADG-RDLTDAETKAFLKAA 90 (110)
T ss_dssp SSBCHHHHHTGGGGTCTTC-CCCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHh
Confidence 358999999999999 7 889999999999877
No 48
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=41.66 E-value=8.4 Score=25.65 Aligned_cols=28 Identities=4% Similarity=-0.114 Sum_probs=24.2
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHH
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIK 40 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~ 40 (103)
.|+.+++..+|+++| +.++.+.|..++.
T Consensus 27 ~I~~~El~~~lr~lG-~~~t~~el~~~~~ 54 (159)
T 3i5g_C 27 DVDAAKVGDLLRCLG-MNPTEAQVHQHGG 54 (159)
T ss_dssp CEEGGGHHHHHHHTT-CCCCHHHHHTTTC
T ss_pred eECHHHHHHHHHHcC-CCCCHHHHHHHHc
Confidence 689999999999999 8899888877654
No 49
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=41.64 E-value=19 Score=21.84 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=27.4
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++..+|..+| ..++.+.+..++..+
T Consensus 48 ~I~~~el~~~l~~~g-~~~~~~~~~~l~~~~ 77 (107)
T 2d58_A 48 DIDIMSLKRMLEKLG-VPKTHLELKKLIGEV 77 (107)
T ss_dssp CEEHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 588899999999999 899999999999977
No 50
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=41.51 E-value=27 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=27.7
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..+++.+
T Consensus 86 ~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 115 (165)
T 1k94_A 86 TVEHHELRQAIGLMG-YRLSPQTLTTIVKRY 115 (165)
T ss_dssp BCCHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 689999999999999 899999999999877
No 51
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=41.49 E-value=28 Score=22.12 Aligned_cols=41 Identities=5% Similarity=0.038 Sum_probs=32.6
Q ss_pred ccCCchhhHhhhhhcccc-cccHHHHHHHHHHhc----C-CChHHHhh
Q 044925 11 IFWPHNTIDSGLVEFSFF-TSQPEKIATLIKLFE----K-RSADELYL 52 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~v-evdaekI~~li~aL~----g-k~I~eLIa 52 (103)
-.|+.+++..+|..+| . .++.+.+..+++.+. | .+..+++.
T Consensus 55 G~I~~~el~~~l~~~g-~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~ 101 (135)
T 3h4s_E 55 HLITAESLRRNSGILG-IEGMSKEDAQGMVREGDLDGDGALNQTEFCV 101 (135)
T ss_dssp TBBCHHHHHHHGGGGT-CCCCCHHHHHHHHHHHCSSCSSSBCHHHHHH
T ss_pred CcCCHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 3689999999999999 7 889999999999773 1 34566664
No 52
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=41.29 E-value=26 Score=20.88 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=27.5
Q ss_pred ccCCchhhHhhhhhc---ccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEF---SFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~---g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+ | ..++.+.+..+++.+
T Consensus 57 G~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 57 GFIEEEELQLFLKNFSSSA-RVLTSAETKAFLAAG 90 (109)
T ss_dssp SSBCHHHHHTTGGGTCTTS-CCCCHHHHHHHHHHH
T ss_pred CeEeHHHHHHHHHHHhccc-ccCCHHHHHHHHHHh
Confidence 468899999999999 7 889999999999876
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=41.19 E-value=17 Score=21.98 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=20.7
Q ss_pred ceeeeecccccCCchhhHhhhhhcc
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
++-|+.-+-..+|+++|+..++..|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 3557778888899999999999888
No 54
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=41.12 E-value=19 Score=22.79 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=26.5
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHH
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKL 41 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~a 41 (103)
.|+.+++.++|..+| ..++.+.+..+++.
T Consensus 101 ~I~~~El~~~l~~~g-~~~~~~~~~~~~~~ 129 (159)
T 2ovk_C 101 LISSAEIRNVLKMLG-ERITEDQCNDIFTF 129 (159)
T ss_dssp EECHHHHHHHHHHSS-SCCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 589999999999999 99999999999993
No 55
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=41.10 E-value=23 Score=21.69 Aligned_cols=32 Identities=3% Similarity=0.038 Sum_probs=28.2
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhc
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE 43 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~ 43 (103)
-.|+.+++.++|..+| ..++.+.+..++..+.
T Consensus 99 G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d 130 (147)
T 4ds7_A 99 GLISAAELKHVLTSIG-EKLTDAEVDEMLREVS 130 (147)
T ss_dssp SEECHHHHHHHHHHTT-CCCCHHHHHHHHHHHS
T ss_pred CeECHHHHHHHHHHcC-CCCCHHHHHHHHHHhc
Confidence 3588999999999999 9999999999998774
No 56
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=41.05 E-value=3.2 Score=32.50 Aligned_cols=8 Identities=50% Similarity=0.796 Sum_probs=3.1
Q ss_pred cccccccC
Q 044925 89 TKEESDDD 96 (103)
Q Consensus 89 eeEE~ddD 96 (103)
++||+++.
T Consensus 300 ~~ee~ee~ 307 (317)
T 2zkr_g 300 AKEESEES 307 (317)
T ss_dssp HHHHTSSC
T ss_pred ccCCcccc
Confidence 33444433
No 57
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=40.63 E-value=26 Score=21.90 Aligned_cols=30 Identities=3% Similarity=0.101 Sum_probs=27.1
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 99 ~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 128 (148)
T 1exr_A 99 LISAAELRHVMTNLG-EKLTDDEVDEMIREA 128 (148)
T ss_dssp CBCHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 589999999999999 889999999999876
No 58
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=40.56 E-value=20 Score=22.46 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=27.7
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+| ..++.+.++.+++.+
T Consensus 111 G~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~ 141 (161)
T 3fwb_A 111 GKISIKNLRRVAKELG-ETLTDEELRAMIEEF 141 (161)
T ss_dssp SEECHHHHHHHHHHTT-CCCCHHHHHHHHHTT
T ss_pred CeEeHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 3689999999999999 999999999998866
No 59
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=40.42 E-value=27 Score=24.39 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCChHHH
Q 044925 34 KIATLIKLFEKRSADEL 50 (103)
Q Consensus 34 kI~~li~aL~gk~I~eL 50 (103)
+++.++..|++.++-++
T Consensus 2 kv~~ive~i~~LtllE~ 18 (137)
T 2ftc_E 2 KIQQLVQDIASLTLLEI 18 (137)
T ss_pred cHHHHHHHHHcCCHHHH
Confidence 46667777777666543
No 60
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=40.42 E-value=26 Score=21.29 Aligned_cols=47 Identities=4% Similarity=0.193 Sum_probs=36.3
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc-------------cccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF-------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v-------------evdaekI~~li~aL~gk~I~ 48 (103)
|.-|+..+-..+++++|+.++..+|-| .-+.+...+.+..|.|..|.
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 345777888899999999999988732 23677788888888887654
No 61
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=39.96 E-value=23 Score=22.29 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=26.7
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++..+|.++| ..++.+.+..++..+
T Consensus 22 ~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 51 (143)
T 2obh_A 22 TIDVKELKVAMRALG-FEPKKEEIKKMISEI 51 (143)
T ss_dssp EEEGGGHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHcC-CCCCHHHHHHHHHHh
Confidence 588899999999999 889999999998855
No 62
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=39.94 E-value=42 Score=20.66 Aligned_cols=46 Identities=7% Similarity=0.054 Sum_probs=35.1
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|+.++..+|-| ..+.+...+.+..|.|..|.
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34777788899999999999988733 23566777888888887665
No 63
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=39.73 E-value=7.2 Score=21.77 Aligned_cols=30 Identities=3% Similarity=-0.007 Sum_probs=25.6
Q ss_pred cCCchhhHhhhhhcccccc--cHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTS--QPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vev--daekI~~li~aL 42 (103)
.|+.+++.++|..+| ..+ +.+.+..+++.+
T Consensus 23 ~i~~~el~~~l~~~g-~~~~~~~~~~~~l~~~~ 54 (76)
T 1qx2_A 23 QISKEELKLVMQTLG-PSLLKGMSTLDEMIEEV 54 (76)
T ss_dssp SEEHHHHHHHHHHHG-GGSCTTSCSHHHHHHHH
T ss_pred eECHHHHHHHHHHhC-CCcCCCHHHHHHHHHHh
Confidence 588899999999999 888 888888888866
No 64
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=39.66 E-value=36 Score=21.26 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=34.3
Q ss_pred eeecccccCCchhhHhhhhhcccc-------------------cccHHHHHHHHHHhcCCChH
Q 044925 5 YMDTVQIFWPHNTIDSGLVEFSFF-------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 5 ~~~~~~~~~~~~~i~~~l~~~g~v-------------------evdaekI~~li~aL~gk~I~ 48 (103)
|+-.+-..|++++|+.+...+|.| .-+.+.....|..|.|+.|.
T Consensus 9 fV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 9 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 677778889999999999988854 23567777788888887664
No 65
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.19 E-value=50 Score=19.33 Aligned_cols=47 Identities=6% Similarity=0.023 Sum_probs=35.5
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc-------------cccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF-------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v-------------evdaekI~~li~aL~gk~I~ 48 (103)
|.-|+..+-..+++++|++++..+|-| .-+.+.....+..|.|..+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 445777788899999999999998733 23667777888888877654
No 66
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=38.74 E-value=23 Score=21.77 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=27.1
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHhc
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE 43 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~ 43 (103)
.|+.+++.++|..+| ..++.+.+..+++.+.
T Consensus 95 ~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~d 125 (142)
T 2bl0_C 95 YIPKAALQDALLNLG-DRLKPHEFAEFLGITE 125 (142)
T ss_dssp CEEHHHHHHHHHHSS-SCCCHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHcC-CCCCHHHHHHHHHHhC
Confidence 588899999999999 8899999999988774
No 67
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.65 E-value=38 Score=19.89 Aligned_cols=46 Identities=7% Similarity=0.040 Sum_probs=35.9
Q ss_pred eeeeecccccCCchhhHhhhhhcccc-------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF-------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v-------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|++.+..+|-| .-+.+.....+..|.|..+.
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44777788899999999999998832 24677788888888887665
No 68
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=38.40 E-value=29 Score=22.57 Aligned_cols=30 Identities=3% Similarity=-0.007 Sum_probs=27.4
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++..+|..+| ..++.+.+..+++.+
T Consensus 66 ~I~~~el~~~l~~~g-~~~~~~e~~~l~~~~ 95 (150)
T 2jjz_A 66 EIDLMSLKRMMEKLG-VPKTHLEMKKMISEV 95 (150)
T ss_dssp SBCHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 689999999999999 899999999999865
No 69
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=37.99 E-value=30 Score=21.85 Aligned_cols=31 Identities=10% Similarity=-0.052 Sum_probs=28.3
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+| ..++.+.++.++..+
T Consensus 116 G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 146 (169)
T 3qrx_A 116 GTITIKDLRRVAKELG-ENLTEEELQEMIAEA 146 (169)
T ss_dssp SSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcC-CCCCHHHHHHHHHHh
Confidence 3689999999999999 999999999999977
No 70
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=37.86 E-value=15 Score=21.63 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=22.3
Q ss_pred CceeeeecccccCCchhhHhhhhhcc
Q 044925 1 MRVQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
||--|+..+-..+++++|++.+..+|
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G 26 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFG 26 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHT
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcC
Confidence 56778888888999999999988887
No 71
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=37.16 E-value=23 Score=19.81 Aligned_cols=30 Identities=3% Similarity=0.124 Sum_probs=26.3
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+| .++.+.+..++..+
T Consensus 18 G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~ 47 (78)
T 1k9u_A 18 GKISLSELTDALRTLG--STSADEVQRMMAEI 47 (78)
T ss_dssp SEECHHHHHHHHHHHH--TCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhC--CCCHHHHHHHHHHh
Confidence 3588999999999999 88889999999876
No 72
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=37.10 E-value=21 Score=22.48 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=26.8
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.++.+++.+
T Consensus 103 ~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 132 (156)
T 1wdc_B 103 KLNIEYIKDLLENMG-DNFNKDEMRMTFKEA 132 (156)
T ss_dssp CEEHHHHHHHHHHSS-SCCCHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHhC-CCCCHHHHHHHHHhc
Confidence 588899999999999 889999999999876
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.77 E-value=50 Score=20.17 Aligned_cols=46 Identities=7% Similarity=0.156 Sum_probs=34.1
Q ss_pred eeeeecccccCCchhhHhhhhhccccc-----------------------------ccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFFT-----------------------------SQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~ve-----------------------------vdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|..++..+|.|. .+.+.....++.|.|..|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 17 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 346777778899999999998888554 2456677777778777664
No 74
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.76 E-value=52 Score=19.53 Aligned_cols=46 Identities=2% Similarity=-0.081 Sum_probs=34.0
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|++++..+|-| .-+.+...+.+..|.|..|.
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34677778889999999999988733 12566677777788777654
No 75
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=36.75 E-value=45 Score=20.87 Aligned_cols=46 Identities=4% Similarity=0.002 Sum_probs=35.1
Q ss_pred eeeecccccCCchhhHhhhhhcccc--------------cccHHHHHHHHHHhcCCChHH
Q 044925 4 QYMDTVQIFWPHNTIDSGLVEFSFF--------------TSQPEKIATLIKLFEKRSADE 49 (103)
Q Consensus 4 ~~~~~~~~~~~~~~i~~~l~~~g~v--------------evdaekI~~li~aL~gk~I~e 49 (103)
-|+..+-..+++++|+.++..+|-| ..+.+.....|+.|.|+.|..
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3666777889999999999988632 136778888888888887753
No 76
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.71 E-value=67 Score=19.08 Aligned_cols=45 Identities=7% Similarity=0.028 Sum_probs=31.8
Q ss_pred eeeeecccccCCchhhHhhhhhccccc----------------ccHHHHHHHHHHhcCCCh
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFFT----------------SQPEKIATLIKLFEKRSA 47 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~ve----------------vdaekI~~li~aL~gk~I 47 (103)
.-|+..+-..+++++|++++..+|-|. -+.+.....+..|.|..|
T Consensus 21 ~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (97)
T 2e5j_A 21 DVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL 81 (97)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 346677778899999999999888442 245556666667766654
No 77
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=36.71 E-value=45 Score=19.90 Aligned_cols=26 Identities=0% Similarity=0.028 Sum_probs=21.1
Q ss_pred eeeeecccccCCchhhHhhhhhcccc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF 28 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v 28 (103)
.-|+..+-..+++++|++.+...|-|
T Consensus 15 ~l~V~nLp~~~t~~~l~~~F~~~G~i 40 (99)
T 2la6_A 15 TIFVQGLGENVTIESVADYFKQIGII 40 (99)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCE
Confidence 45777788889999999999888844
No 78
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=36.71 E-value=25 Score=20.96 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=26.1
Q ss_pred cCCchhhHhhhhhc---ccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEF---SFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~---g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+ | ..++.+.+..+++.+
T Consensus 57 ~i~~~el~~~l~~~~~~g-~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 57 FIEEEELKGVLKGFSAHG-RDLNDTETKALLAAG 89 (109)
T ss_dssp EECHHHHHTHHHHHCTTC-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHh
Confidence 57888999999998 8 888999999988876
No 79
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=36.39 E-value=27 Score=21.37 Aligned_cols=39 Identities=8% Similarity=-0.027 Sum_probs=30.5
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHhcC---CChHHHhh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEK---RSADELYL 52 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~g---k~I~eLIa 52 (103)
.|+.+++.++|..+| ..++.+.+..++.. .+ .+..+++.
T Consensus 21 ~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~-~~~g~i~~~eF~~ 62 (145)
T 2bl0_B 21 KVSIEELGSALRSLG-KNPTNAELNTIKGQ-LNAKEFDLATFKT 62 (145)
T ss_dssp CEEGGGHHHHHHHTT-CCCCHHHHHHHHHH-HTSSEECHHHHHH
T ss_pred ccCHHHHHHHHHHhC-CCCCHHHHHHHHHh-cCCCeEcHHHHHH
Confidence 588999999999999 89999999998875 21 34455554
No 80
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=36.13 E-value=25 Score=22.87 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=27.4
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++..+|..+| ..++.+.+..++..+
T Consensus 64 ~I~~~El~~~l~~~g-~~~~~~~~~~l~~~~ 93 (147)
T 1wy9_A 64 DIDIMSLKRMLEKLG-VPKTHLELKRLIREV 93 (147)
T ss_dssp SEEHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 588999999999999 899999999999976
No 81
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=35.98 E-value=26 Score=21.92 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=32.6
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhc-----CCChHHHhh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE-----KRSADELYL 52 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~-----gk~I~eLIa 52 (103)
-.|+.+++.++|..+| ..++.+.+..++..+. ..+..+++.
T Consensus 29 G~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~ 74 (158)
T 2jnf_A 29 GRVSTDQIGIILEVLG-IQQTKSTIRQLIDEFDPFGNGDIDFDSFKI 74 (158)
T ss_dssp SSEEHHHHHHHHHHTT-CSCSHHHHHHHHHHHCTTCCSEECHHHHHH
T ss_pred CcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 4588999999999999 8999999999999762 134556664
No 82
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.74 E-value=47 Score=19.82 Aligned_cols=46 Identities=0% Similarity=-0.098 Sum_probs=34.3
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|++++..+|-| .-+.+.....+..|.|..+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45777788889999999999988633 23456677778888887765
No 83
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=35.71 E-value=35 Score=21.22 Aligned_cols=30 Identities=20% Similarity=0.082 Sum_probs=27.2
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 112 ~I~~~e~~~~l~~~g-~~~~~~~~~~~~~~~ 141 (162)
T 1top_A 112 FIDIEELGEILRATG-EHVTEEDIEDLMKDS 141 (162)
T ss_dssp CBCHHHHHHHHHTTT-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 589999999999999 899999999999877
No 84
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=35.54 E-value=34 Score=20.31 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=26.4
Q ss_pred cCCchhhHhhhhhc---ccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEF---SFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~---g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+ | ..++.+.+..+++.+
T Consensus 57 ~I~~~el~~~l~~~~~~g-~~~~~~~~~~~~~~~ 89 (108)
T 1rro_A 57 YLDGDELKYFLQKFQSDA-RELTESETKSLMDAA 89 (108)
T ss_dssp EECTHHHHTGGGGTCTTS-CCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHh
Confidence 58899999999998 6 788999999999876
No 85
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=35.49 E-value=37 Score=20.73 Aligned_cols=41 Identities=5% Similarity=0.110 Sum_probs=32.1
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhc-----CCChHHHhh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE-----KRSADELYL 52 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~-----gk~I~eLIa 52 (103)
-.|+.+++.++|..+| ..++...+..++..+. ..+..+++.
T Consensus 26 G~i~~~el~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 71 (153)
T 3ox6_A 26 GYINCRDLGNCMRTMG-YMPTEMELIELSQQINMNLGGHVDFDDFVE 71 (153)
T ss_dssp SSCCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHTTSTTCCCHHHHHH
T ss_pred CcCcHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCccCcHHHHHH
Confidence 3689999999999999 8999999999998651 234556553
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=35.18 E-value=72 Score=19.05 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=34.2
Q ss_pred eeeeecccccCCchhhHhhhhhcccc--------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF--------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v--------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|..++..+|-| .-+.+.....+..|.|+.+.
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 17 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 34677778899999999999888733 23566677778888887654
No 87
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=35.03 E-value=37 Score=21.19 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=27.8
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 34 G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 64 (161)
T 1dtl_A 34 GSISTKELGKVMRMLG-QNPTPEELQEMIDEV 64 (161)
T ss_dssp GSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHcC-CCCCHHHHHHHHHHh
Confidence 4689999999999999 899999999999866
No 88
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.91 E-value=43 Score=19.70 Aligned_cols=46 Identities=7% Similarity=0.104 Sum_probs=35.1
Q ss_pred eeeeecccccCCchhhHhhhhhcccc-------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF-------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v-------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|++.+..+|-| .-+.+.....+..|.|..+.
T Consensus 12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 12 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 44777778889999999999998733 23567777888888887664
No 89
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=34.68 E-value=29 Score=20.64 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=25.8
Q ss_pred cCCchhhHhhhhhc---ccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEF---SFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~---g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+ | ..++.+.+..+++.+
T Consensus 57 ~I~~~el~~~l~~~~~~g-~~~~~~~~~~~~~~~ 89 (109)
T 1rwy_A 57 FIEEDELGSILKGFSSDA-RDLSAKETKTLMAAG 89 (109)
T ss_dssp EECHHHHHTHHHHHCTTC-CCCCHHHHHHHHHHH
T ss_pred eEcHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence 58889999999998 7 788888898888876
No 90
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=34.41 E-value=36 Score=21.58 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=30.6
Q ss_pred cCCchhhHhhhhhcccc-cccHHHHHHHHHHhcC-CChHHHh
Q 044925 12 FWPHNTIDSGLVEFSFF-TSQPEKIATLIKLFEK-RSADELY 51 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~v-evdaekI~~li~aL~g-k~I~eLI 51 (103)
.|+.+++..+|..+| . .++.+.|..++....| .+..+++
T Consensus 41 ~i~~~el~~~l~~~g-~~~~~~~~~~~l~~~~dg~i~~~eF~ 81 (166)
T 2mys_B 41 IIDKDDLRETFAAMG-RLNVKNEELDAMIKEASGPINFTVFL 81 (166)
T ss_pred cCCHHHHHHHHHHhC-CCCCCHHHHHHHHHHCCCCcCHHHHH
Confidence 588999999999999 7 8999999998886533 3444554
No 91
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=34.28 E-value=28 Score=21.49 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=26.2
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++..+|..+| ..++.+.+..++..+
T Consensus 20 ~i~~~el~~~l~~~g-~~~~~~~~~~l~~~~ 49 (148)
T 1m45_A 20 AIAKDSLGDYLRAIG-YNPTNQLVQDIINAD 49 (148)
T ss_dssp EEEGGGHHHHHHHTT-CCCCHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 588899999999999 899999999998866
No 92
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=33.98 E-value=33 Score=22.79 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=27.5
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.++.++..+
T Consensus 119 ~I~~~el~~~l~~~g-~~~~~~~~~~l~~~~ 148 (198)
T 1juo_A 119 TVDPQELQKALTTMG-FRLSPQAVNSIAKRY 148 (198)
T ss_dssp EECHHHHHHHHHHTT-CCCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 589999999999999 899999999999877
No 93
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=33.81 E-value=29 Score=19.77 Aligned_cols=29 Identities=7% Similarity=0.252 Sum_probs=25.5
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| .++.+.+..++..+
T Consensus 27 ~i~~~el~~~l~~~g--~~~~~~~~~~~~~~ 55 (86)
T 2opo_A 27 KISSSELGDALKTLG--SVTPDEVRRMMAEI 55 (86)
T ss_dssp EEEHHHHHHHHHTTT--TCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 578899999999999 78888899999876
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=33.76 E-value=60 Score=19.33 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=32.2
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|+..+..+|-| ..+.+.....+..|.|..+.
T Consensus 29 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 29 TAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34677777889999999999888733 12556666667777666543
No 95
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=33.14 E-value=20 Score=22.29 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=25.5
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.++.+++.+
T Consensus 103 ~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 132 (151)
T 1w7j_B 103 KVMGAELRHVLTTLG-EKMTEEEVETVLAGH 132 (151)
T ss_dssp EEEHHHHHHHHHHSS-SCCCHHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHcC-CCCCHHHHHHHHHhc
Confidence 478889999999999 888888888888755
No 96
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=33.07 E-value=33 Score=21.96 Aligned_cols=30 Identities=13% Similarity=0.350 Sum_probs=27.4
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.++.++..+
T Consensus 88 ~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 117 (167)
T 1gjy_A 88 TVDPQELQKALTTMG-FRLNPQTVNSIAKRY 117 (167)
T ss_dssp EECHHHHHHHHHTTT-CCCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcC-CCCCHHHHHHHHHHh
Confidence 588999999999999 889999999999877
No 97
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=32.58 E-value=23 Score=20.28 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=26.7
Q ss_pred cCCchhhHhhhhh---cccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVE---FSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~---~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|.. +| ..++.+.+..+++.+
T Consensus 28 ~i~~~el~~~l~~~~~~g-~~~~~~~~~~~~~~~ 60 (90)
T 1k8u_A 28 TLSKKELKELIQKELTIG-SKLQDAEIARLMEDL 60 (90)
T ss_dssp EEEHHHHHHHHHHHSCCG-GGTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcccC-CCCCHHHHHHHHHHh
Confidence 6889999999998 99 888888899999866
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=32.56 E-value=70 Score=19.84 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=34.5
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|..++..+|-| ..+.+.....+..|.|..|.
T Consensus 24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 45777788889999999998888743 22456777778788887664
No 99
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=32.26 E-value=27 Score=21.88 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=26.3
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHH
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKL 41 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~a 41 (103)
.|+.+++.++|..+| ..++.+.+..+++.
T Consensus 100 ~I~~~el~~~l~~~g-~~~~~~~~~~~~~~ 128 (156)
T 1wdc_C 100 FISGAELRHVLTALG-ERLSDEDVDEIIKL 128 (156)
T ss_dssp EEEHHHHHHHHHHSS-SCCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 588899999999999 88999999999988
No 100
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.81 E-value=59 Score=19.18 Aligned_cols=46 Identities=4% Similarity=0.070 Sum_probs=33.1
Q ss_pred eeeeecccccCCchhhHhhhhhccccc---------------------ccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFFT---------------------SQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~ve---------------------vdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|++.+..+|-|. .+.+.....+..|.|..|.
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 346777788899999999998887442 2456667777777776553
No 101
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=31.77 E-value=43 Score=21.38 Aligned_cols=30 Identities=3% Similarity=0.086 Sum_probs=27.4
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 27 ~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~ 56 (179)
T 2f2o_A 27 TITTKELGTVMRSLG-QNPTEAELQDMINEV 56 (179)
T ss_dssp CBCHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHcC-CCCCHHHHHHHHHHh
Confidence 689999999999999 899999999999866
No 102
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=31.69 E-value=30 Score=20.58 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=25.8
Q ss_pred cCCchhhHhhhhhc---ccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEF---SFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~---g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+ | ..++.+.+..++..+
T Consensus 58 ~I~~~el~~~l~~~~~~g-~~~~~~~~~~~~~~~ 90 (109)
T 1bu3_A 58 FIEEDELKLFLQVFSAGA-RALTDAETKAFLKAG 90 (109)
T ss_dssp SEEHHHHHTHHHHHSTTC-CCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHcccC-CCCCHHHHHHHHHHh
Confidence 57888999999998 7 888899899888876
No 103
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=31.62 E-value=30 Score=22.47 Aligned_cols=30 Identities=3% Similarity=-0.140 Sum_probs=27.7
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..+++.+
T Consensus 129 ~I~~~El~~~l~~~g-~~~~~~~~~~~~~~~ 158 (195)
T 1qv0_A 129 TITLDEWKAYGKISG-ISPSQEDCEATFRHC 158 (195)
T ss_dssp EECHHHHHHHHHHHS-SCCCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 588999999999999 899999999999977
No 104
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=30.95 E-value=80 Score=18.26 Aligned_cols=46 Identities=7% Similarity=0.143 Sum_probs=34.1
Q ss_pred eeeeecccccCCchhhHhhhhhcccc-------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF-------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v-------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|++.+..+|-| ..+.+.....+..|.|..+.
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34677777889999999999987622 23567777888888887764
No 105
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=30.92 E-value=40 Score=22.05 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=26.1
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++..+|.++| ..++.+.+..++...
T Consensus 32 ~I~~~El~~~l~~lg-~~~~~~~~~~~~~~~ 61 (153)
T 3i5g_B 32 FIGMEDLKDMFSSLG-RVPPDDELNAMLKEC 61 (153)
T ss_dssp CCCHHHHHHHHHHTT-SCCCHHHHHHHHHTS
T ss_pred eEcHHHHHHHHHHcC-CCccHHHHHHHHHhc
Confidence 689999999999999 888888888888743
No 106
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.42 E-value=55 Score=19.49 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=35.2
Q ss_pred ceeeeecccccCCchhhHhhhhhc--ccc-------------cccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEF--SFF-------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~--g~v-------------evdaekI~~li~aL~gk~I~ 48 (103)
|.-|+..+-..+++++|++++..+ |-| .-+.+.....+..|.|..|.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 345777788899999999999998 422 23667777888888887664
No 107
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=30.25 E-value=36 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=20.9
Q ss_pred ceeeeecccccCCchhhHhhhhhcc
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
|.-|+..+-..+++++|++.+...|
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G 32 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFG 32 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCCHHHHHHHHhccC
Confidence 3457778888999999999999888
No 108
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=30.07 E-value=55 Score=20.99 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=28.1
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhc
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE 43 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~ 43 (103)
-.|+.+++.++|..+| ..++.+.+..+++.+.
T Consensus 92 G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~d 123 (173)
T 1alv_A 92 GTIGSSELPGAFEAAG-FHLNEHLYSMIIRRYS 123 (173)
T ss_dssp SSBCTTTHHHHHHHHT-CCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcC-CCCCHHHHHHHHHHhc
Confidence 3689999999999999 8999999999998763
No 109
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.03 E-value=30 Score=23.17 Aligned_cols=30 Identities=3% Similarity=0.153 Sum_probs=26.7
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++..+|..+| ..++...|..++..+
T Consensus 27 ~I~~~El~~~l~~lg-~~~~~~~~~~~~~~~ 56 (176)
T 2lhi_A 27 SISSSELATVMRSLG-LSPSEAEVNDLMNEI 56 (176)
T ss_dssp CBCHHHHHHHHHHHT-CCCCHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHcC-CChhHHHHHHHHHHh
Confidence 688999999999999 999999999988844
No 110
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=30.02 E-value=65 Score=20.73 Aligned_cols=46 Identities=2% Similarity=-0.027 Sum_probs=33.3
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|+.++..+|-| ..+.+.....+..|.|..|.
T Consensus 48 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 48 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34677778889999999999888733 23556677777777776653
No 111
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=29.80 E-value=33 Score=22.06 Aligned_cols=30 Identities=3% Similarity=-0.057 Sum_probs=27.5
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..+++.+
T Consensus 125 ~Is~~El~~~l~~~g-~~~~~~~~~~~~~~~ 154 (191)
T 1uhk_A 125 AITLDEWKAYTKAAG-IIQSSEDCEETFRVC 154 (191)
T ss_dssp EECHHHHHHHHHHHT-SCCSHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 589999999999999 889999999999977
No 112
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.80 E-value=75 Score=19.69 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=35.1
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|+.++..+|-| .-+.+.....+..|.|..+.
T Consensus 12 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFH 72 (111)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 45777788899999999999988733 23566677778888887765
No 113
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=29.38 E-value=58 Score=20.38 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=31.7
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHhc-----CCChHHHhh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE-----KRSADELYL 52 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~-----gk~I~eLIa 52 (103)
.|+.+++..+|..+| ..++...+..++..+. ..+..+++.
T Consensus 43 ~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 87 (166)
T 2aao_A 43 QITFEELKAGLKRVG-ANLKESEILDLMQAADVDNSGTIDYKEFIA 87 (166)
T ss_dssp SBCHHHHHHHGGGGT-CCCCHHHHHHHHHHHCTTCCSSBCHHHHHH
T ss_pred eEeHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 588999999999999 9999999999998662 134556654
No 114
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=29.32 E-value=67 Score=20.86 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=35.7
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChHH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSADE 49 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~e 49 (103)
.-|+..+-..+++++|..++..+|-| ..+.+...+.|..|.|..|..
T Consensus 41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45777788899999999999988733 235677778888888877653
No 115
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=28.61 E-value=45 Score=18.67 Aligned_cols=31 Identities=3% Similarity=-0.106 Sum_probs=26.0
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+|...++.+.+..++..+
T Consensus 24 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 54 (81)
T 1c7v_A 24 VIDFDEFKFIMQKVGEEPLTDAEVEEAMKEA 54 (81)
T ss_dssp EECHHHHHHHSSTTTTCCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5888999999999985567888899998876
No 116
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.28 E-value=73 Score=19.33 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=34.2
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|+.++..+|-| .-+.+.....+..|.|..|.
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34677778889999999999888733 23566777788888877654
No 117
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=27.82 E-value=48 Score=22.32 Aligned_cols=31 Identities=3% Similarity=-0.033 Sum_probs=27.5
Q ss_pred cCCchhhHhhhhhc----ccccccHHHHHHHHHHhc
Q 044925 12 FWPHNTIDSGLVEF----SFFTSQPEKIATLIKLFE 43 (103)
Q Consensus 12 ~~~~~~i~~~l~~~----g~vevdaekI~~li~aL~ 43 (103)
.|+.++++++|..+ | ..++.+.++.+++.+.
T Consensus 91 ~I~~~El~~~l~~l~~~~G-~~~~~~~~~~l~~~~d 125 (174)
T 2i7a_A 91 VLLSSDLWKAIENTDFLRG-IFISRELLHLVTLRYS 125 (174)
T ss_dssp BEEGGGHHHHHHTCGGGTT-CCCCHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHhHhccC-CCCCHHHHHHHHHHHc
Confidence 58899999999999 9 8899999999998764
No 118
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=27.55 E-value=49 Score=24.26 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=28.9
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChH
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~ 48 (103)
|.|+.+.+++.|...| | +.+.|+.++...++....
T Consensus 119 r~~~~~~L~~~L~~~g-v--~~~~i~~I~~~~~~~~y~ 153 (194)
T 3lgb_A 119 RDWSHERLSAELRSMK-L--TQAQIISVLDSCQKGEYT 153 (194)
T ss_dssp HHSCHHHHHHHHHHTT-C--CHHHHHHHHHHHHTTCHH
T ss_pred CCCCHHHHHHHHHHcC-C--CHHHHHHHHHHHhcCChh
Confidence 4588999999999999 5 889999999877666544
No 119
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=27.23 E-value=61 Score=19.92 Aligned_cols=31 Identities=3% Similarity=-0.082 Sum_probs=24.7
Q ss_pred ccCCchhhHhhhhhcccc-cccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFF-TSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~v-evdaekI~~li~aL 42 (103)
-.||-+.|+.+.+++| + .+..+-...|-..+
T Consensus 5 s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dv 36 (70)
T 1taf_B 5 SSISAESMKVIAESIG-VGSLSDDAAKELAEDV 36 (70)
T ss_dssp CCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHH
Confidence 3689999999999999 7 67777666666643
No 120
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=26.74 E-value=48 Score=22.10 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=32.1
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhcC-CChHHHhh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEK-RSADELYL 52 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~g-k~I~eLIa 52 (103)
-.|+.+++..+|..+| +.++...|..++..+.| .++.+++.
T Consensus 72 G~i~~~el~~~l~~lg-~~~~~~~~~~l~~~~~g~i~~~eF~~ 113 (196)
T 3dtp_E 72 GFISKNDIRATFDSLG-RLCTEQELDSMVAEAPGPINFTMFLT 113 (196)
T ss_dssp SBCCHHHHHHHHHTTS-CCCCHHHHHHHHTTSSSCCBHHHHHH
T ss_pred CcCCHHHHHHHHHHhC-CCCCHHHHHHHHHHccCCCcHHHHHH
Confidence 3689999999999999 99999999999876633 34455553
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=26.72 E-value=1e+02 Score=18.48 Aligned_cols=46 Identities=4% Similarity=0.122 Sum_probs=33.6
Q ss_pred ceeeeecccc-cCCchhhHhhhhhcccc-------------cccHHHHHHHHHHhcCCCh
Q 044925 2 RVQYMDTVQI-FWPHNTIDSGLVEFSFF-------------TSQPEKIATLIKLFEKRSA 47 (103)
Q Consensus 2 ~~~~~~~~~~-~~~~~~i~~~l~~~g~v-------------evdaekI~~li~aL~gk~I 47 (103)
+.-|+..+-. .+++++|++.+..+|-| .-+.+.....+..|.|..+
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3457777774 89999999999998733 2356667777777777655
No 122
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A
Probab=26.68 E-value=41 Score=21.47 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=24.9
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.++++++|..+| . +.+.+..+++.+
T Consensus 61 G~I~~~El~~~l~~lG-~--t~~ei~~~~~~~ 89 (123)
T 2kld_A 61 GKLNFDELRQDLKGKG-H--TDAEIEAIFTKY 89 (123)
T ss_dssp TCEEHHHHHHHTTTCC-S--SHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-C--CHHHHHHHHHHH
Confidence 4688999999999999 4 888899988866
No 123
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=26.12 E-value=61 Score=21.14 Aligned_cols=41 Identities=7% Similarity=0.170 Sum_probs=32.5
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhc-----CCChHHHhh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE-----KRSADELYL 52 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~-----gk~I~eLIa 52 (103)
-.|+.+++.++|..+| ..++.+.+..++..+. ..+..+++.
T Consensus 52 G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~ 97 (204)
T 3e3r_A 52 RSLDADEFRQGLAKLG-LVLDQAEAEGVCRKWDRNGSGTLDLEEFLR 97 (204)
T ss_dssp SSBCHHHHHHHHHTTT-CCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred CCcCHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCCCcCcHHHHHH
Confidence 3689999999999999 9999999999998662 134456654
No 124
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=25.98 E-value=61 Score=21.41 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=27.6
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.++.+++.+
T Consensus 109 ~i~~~e~~~~l~~~g-~~~~~~~~~~~~~~~ 138 (191)
T 1y1x_A 109 RLDSNEVRAALLSSG-YQVSEQTFQALMRKF 138 (191)
T ss_dssp CBCHHHHHHHHHTTS-CCCCHHHHHHHHHHH
T ss_pred eEcHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 689999999999999 899999999999976
No 125
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.79 E-value=41 Score=19.97 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=20.9
Q ss_pred ceeeeecccccCCchhhHhhhhhccc
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSF 27 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~ 27 (103)
|.-|+-.+-..+++++|++++..+|-
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~ 35 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGE 35 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCC
Confidence 34577778888999999999988883
No 126
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=25.65 E-value=58 Score=20.00 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=30.8
Q ss_pred cCCchhhHhhhhh-----cccccccHHHHHHHHHHhc--C---CChHHHhh
Q 044925 12 FWPHNTIDSGLVE-----FSFFTSQPEKIATLIKLFE--K---RSADELYL 52 (103)
Q Consensus 12 ~~~~~~i~~~l~~-----~g~vevdaekI~~li~aL~--g---k~I~eLIa 52 (103)
.|+.++++++|.. +| ..++.+.|..+++.+. | .++.+.+.
T Consensus 28 ~I~~~El~~~l~~~~~~~lg-~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~ 77 (99)
T 2y5i_A 28 KLSKGELKELLNAELTDFLM-SQKDPMLVEKIMNDLDSNKDNEVDFNEFVV 77 (99)
T ss_dssp EECHHHHHHHHHHHSGGGGT-TSCCHHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcc-ccccHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence 7999999999987 67 6788899999999772 1 34556654
No 127
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=25.38 E-value=25 Score=24.61 Aligned_cols=46 Identities=7% Similarity=-0.010 Sum_probs=32.8
Q ss_pred eecccccCCchhhHhhhhhcccc---------cccHHHHHHHHHHh---cCCChHHHhh
Q 044925 6 MDTVQIFWPHNTIDSGLVEFSFF---------TSQPEKIATLIKLF---EKRSADELYL 52 (103)
Q Consensus 6 ~~~~~~~~~~~~i~~~l~~~g~v---------evdaekI~~li~aL---~gk~I~eLIa 52 (103)
++.|...+-++-+++|+.++| + ..+.+.+.+|+.++ -|+++++|+.
T Consensus 10 ~~~v~~~~G~e~w~~i~~~a~-~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~ 67 (181)
T 2kii_A 10 EDMVVAQCGMSVWNELLEKHA-PKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVK 67 (181)
T ss_dssp HHHHHHHTCHHHHHHHHHHHC-CSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHhC-CCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456777788888888888888 5 55666677777633 6777777764
No 128
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.18 E-value=43 Score=19.60 Aligned_cols=24 Identities=0% Similarity=0.068 Sum_probs=19.6
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|...+..+|
T Consensus 17 ~l~v~nlp~~~t~~~l~~~f~~~G 40 (95)
T 2cqc_A 17 CLGVFGLSLYTTERDLREVFSKYG 40 (95)
T ss_dssp CEEEESCCSSCCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcC
Confidence 456777788899999999988887
No 129
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=25.16 E-value=92 Score=19.44 Aligned_cols=47 Identities=4% Similarity=-0.082 Sum_probs=34.6
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
|--|+-.+-..+++++|+.+...+|-| .-+.+.....+..|.|+.+.
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345777788899999999999888744 23566777777778777654
No 130
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=25.13 E-value=49 Score=22.80 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=28.5
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhc
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE 43 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~ 43 (103)
-.|+.+++.++|..+| ..++.+.++.+++.+.
T Consensus 132 G~I~~~El~~~l~~~g-~~~~~~~~~~l~~~~d 163 (220)
T 3sjs_A 132 GTLEPHEILPALQQLG-FYINQRTSLLLHRLFA 163 (220)
T ss_dssp TEECHHHHHHHHHHHT-CCCCHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhc
Confidence 3689999999999999 8999999999999774
No 131
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=24.82 E-value=45 Score=19.27 Aligned_cols=24 Identities=4% Similarity=0.105 Sum_probs=19.5
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|++.+..+|
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~~G 36 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTKFG 36 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC
Confidence 347777788889999998888888
No 132
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=24.82 E-value=47 Score=27.24 Aligned_cols=31 Identities=3% Similarity=0.035 Sum_probs=28.0
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
-.|+.+++.++|.++| +.++.+.|..+++.+
T Consensus 317 G~IS~eELk~aLrsLG-~~~TeeEI~~Lf~~~ 347 (440)
T 3u0k_A 317 GTITTKELGTVMRSLG-QNPTEAELQDMINEV 347 (440)
T ss_dssp SEECHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHcC-CCCCHHHHHHHHHHh
Confidence 3688899999999999 999999999999966
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=24.79 E-value=95 Score=19.13 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=33.9
Q ss_pred eeeeecccccCCchhhHhhhhhcccc-------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF-------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v-------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|.+++..+|-| .-+.+.....+..|.|..+.
T Consensus 33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp EEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34677778889999999999988733 23566677778888877653
No 134
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=24.53 E-value=52 Score=18.94 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=19.7
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|++.+..+|
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~~G 31 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHGCG 31 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC
Confidence 346777788889999999998888
No 135
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.50 E-value=40 Score=19.75 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=20.2
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|+..+..+|
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G 41 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYG 41 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcC
Confidence 457777888899999999998888
No 136
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=24.00 E-value=54 Score=18.79 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=19.7
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|++.+...|
T Consensus 8 ~l~v~nlp~~~t~~~l~~~F~~~G 31 (87)
T 3bs9_A 8 HVFVGDLSPEITTAAIAAAFAPFG 31 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346777788899999999998887
No 137
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=23.75 E-value=62 Score=20.66 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.9
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ..++.+.+..++..+
T Consensus 90 ~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~ 119 (172)
T 2znd_A 90 MIDKNELKQALSGFG-YRLSDQFHDILIRKF 119 (172)
T ss_dssp EECHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcC-CCCCHHHHHHHHHHh
Confidence 588999999999999 889999999999866
No 138
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=23.25 E-value=59 Score=19.00 Aligned_cols=24 Identities=0% Similarity=0.029 Sum_probs=19.7
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|++.+..+|
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~~G 41 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQAG 41 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcC
Confidence 346777778899999999998887
No 139
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.16 E-value=60 Score=19.18 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=32.7
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc---------------c-ccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF---------------T-SQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v---------------e-vdaekI~~li~aL~gk~I~ 48 (103)
|--|+..+-..+++++|+..+...|-| + .+.+.....+. |.|..|.
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC
Confidence 345777788899999999999987722 1 25666667777 7766554
No 140
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.25 E-value=58 Score=19.08 Aligned_cols=26 Identities=4% Similarity=0.057 Sum_probs=20.8
Q ss_pred ceeeeecccccCCchhhHhhhhhccc
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSF 27 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~ 27 (103)
|.-|+..+-..+++++|..++..+|-
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~ 31 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGV 31 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 34577778888999999999888873
No 141
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=22.24 E-value=53 Score=21.23 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=31.2
Q ss_pred cCCchhhHhhhhh-----cccccccHHHHHHHHHHhc----C-CChHHHhh
Q 044925 12 FWPHNTIDSGLVE-----FSFFTSQPEKIATLIKLFE----K-RSADELYL 52 (103)
Q Consensus 12 ~~~~~~i~~~l~~-----~g~vevdaekI~~li~aL~----g-k~I~eLIa 52 (103)
.|+.++|+++|.. +| ..++.+.|+.+++.+. | .++.+.+.
T Consensus 40 ~Is~~EL~~~l~~~l~~~lg-~~~t~~ev~~li~~~D~dgdG~Idf~EF~~ 89 (113)
T 2lnk_A 40 KLNKSELKELLTRELPSFLG-KRTDEAAFQKLMSNLDSNRDNEVDFQEYCV 89 (113)
T ss_dssp CBCHHHHHHHHHHHCGGGGT-TCCCTTHHHHHHHHHCSSSSSCBCHHHHHH
T ss_pred EECHHHHHHHHHHHcchhcC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 7999999999986 66 6778888999999772 1 45667664
No 142
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.22 E-value=53 Score=19.22 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=34.4
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|.+++..+|-| .-+.+.....+..|.|..+.
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 45777788889999999999888733 13566777778878777664
No 143
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=22.08 E-value=56 Score=21.74 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=32.3
Q ss_pred ccCCchhhHhhhhhcccccccHHHHHHHHHHhc-----CCChHHHhh
Q 044925 11 IFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFE-----KRSADELYL 52 (103)
Q Consensus 11 ~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~-----gk~I~eLIa 52 (103)
-.|+.+++.++|..+| ..++.+.+..++..+. ..+..+++.
T Consensus 25 G~I~~~E~~~~l~~~g-~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~ 70 (188)
T 1s6i_A 25 GTITFDELKDGLKRVG-SELMESEIKDLMDAADIDKSGTIDYGEFIA 70 (188)
T ss_dssp SCEEHHHHHHHHTTTT-CCCCHHHHHHHHHHTCTTCSSEECHHHHHH
T ss_pred CcCCHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCCCCeEeHHHHHH
Confidence 3588899999999999 8999999999998662 134566664
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=22.06 E-value=52 Score=20.72 Aligned_cols=47 Identities=9% Similarity=0.103 Sum_probs=36.1
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc--------------------cccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF--------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v--------------------evdaekI~~li~aL~gk~I~ 48 (103)
|.-|+..+-..+++++|...+...|-| ..+.+.....+..|.|..+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE 67 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC
Confidence 456788888999999999999988744 12667777778788777664
No 145
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.94 E-value=50 Score=18.47 Aligned_cols=22 Identities=5% Similarity=0.128 Sum_probs=18.3
Q ss_pred eeecccccCCchhhHhhhhhcc
Q 044925 5 YMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 5 ~~~~~~~~~~~~~i~~~l~~~g 26 (103)
|+..+-..+++++|++.+...|
T Consensus 4 ~v~nlp~~~t~~~l~~~F~~~G 25 (77)
T 1uaw_A 4 FIGGLSWQTTQEGLREYFGQFG 25 (77)
T ss_dssp EEESCCSSCCSHHHHHHHTTTS
T ss_pred EEeCCCCCCCHHHHHHHHHhcC
Confidence 5666777889999999998888
No 146
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=21.80 E-value=64 Score=19.68 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.4
Q ss_pred hhHhhhhhcccc-cccHHHHHHHHHHh
Q 044925 17 TIDSGLVEFSFF-TSQPEKIATLIKLF 42 (103)
Q Consensus 17 ~i~~~l~~~g~v-evdaekI~~li~aL 42 (103)
-|.++|++.| + .++..-++.|+.++
T Consensus 6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~ 31 (68)
T 1taf_A 6 VIMSILKELN-VQEYEPRVVNQLLEFT 31 (68)
T ss_dssp HHHHHHHHTT-CCCBCTHHHHHHHHHH
T ss_pred HHHHHHHHCC-CcccCHHHHHHHHHHH
Confidence 4789999999 7 78888888988866
No 147
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.65 E-value=51 Score=19.65 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=32.1
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
|.-|+..+-..+++++|..++..+|-| ..+.+.....+..|.|..|.
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345777788889999999999888733 12455566666666665543
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=21.53 E-value=1.3e+02 Score=17.65 Aligned_cols=46 Identities=4% Similarity=0.083 Sum_probs=34.5
Q ss_pred eeeeecccc-cCCchhhHhhhhhcccc-------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQI-FWPHNTIDSGLVEFSFF-------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~-~~~~~~i~~~l~~~g~v-------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-- .+++++|.+.+..+|-| .-+.+.....+..|.|..+.
T Consensus 12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 12 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp EEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 346667774 89999999999988733 23677777888888887664
No 149
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=21.32 E-value=57 Score=19.30 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=33.1
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
|.-|+..+-..+++++|++.+..+|-| .-+.+.....++.|.|..+.
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 445777788889999999999888733 12455666677777776554
No 150
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=21.24 E-value=53 Score=20.19 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=20.0
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|++++..+|
T Consensus 42 ~l~V~nlp~~~t~~~l~~~F~~~G 65 (118)
T 2khc_A 42 NLFIYHLPQEFTDTDLASTFLPFG 65 (118)
T ss_dssp EEEEECSCTTCCHHHHHHHTTTSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC
Confidence 347777788899999999999887
No 151
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.17 E-value=54 Score=19.55 Aligned_cols=46 Identities=9% Similarity=0.103 Sum_probs=32.5
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCCh
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSA 47 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I 47 (103)
|.-|+..+-..+++++|...+..+|-| .-+.+.....++.|.|..+
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 75 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 345777788889999999999888733 1255666666766666654
No 152
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=21.16 E-value=63 Score=19.74 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=35.0
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|+.++..+|-| .-+.+.....+..|.|..|.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 17 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45777788899999999999988743 13567777888888877664
No 153
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=21.09 E-value=50 Score=18.76 Aligned_cols=22 Identities=9% Similarity=0.366 Sum_probs=18.6
Q ss_pred eeecccccCCchhhHhhhhhcc
Q 044925 5 YMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 5 ~~~~~~~~~~~~~i~~~l~~~g 26 (103)
|+..+-..+++++|...+...|
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~~G 26 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKDFP 26 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTTST
T ss_pred EEeCCCCCCCHHHHHHHHHhcC
Confidence 6677778899999999998887
No 154
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.02 E-value=64 Score=19.55 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=34.9
Q ss_pred eeeeecccccCCchhhHhhhhhcccc------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|+.++..+|-| .-+.+.....++.|.|..|.
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45777788899999999999988733 12667777788888777664
No 155
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.00 E-value=62 Score=19.35 Aligned_cols=26 Identities=4% Similarity=0.012 Sum_probs=20.9
Q ss_pred ceeeeecccccCCchhhHhhhhhccc
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSF 27 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~ 27 (103)
+.-|+..+-..+++++|...+..+|-
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~G~ 39 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKYGR 39 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 34577778888999999999988873
No 156
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.72 E-value=54 Score=19.50 Aligned_cols=24 Identities=0% Similarity=0.034 Sum_probs=19.8
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|..++..+|
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~~~G 42 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICKAHG 42 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC
Confidence 346777788899999999998877
No 157
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=20.63 E-value=64 Score=20.60 Aligned_cols=27 Identities=15% Similarity=-0.025 Sum_probs=22.5
Q ss_pred ceeeeecccccCCchhhHhhhhhcccc
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSFF 28 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~v 28 (103)
|+-|...+--.+++++|+.....+|-|
T Consensus 22 ~~l~V~NLp~~~te~~L~~lF~~fG~V 48 (100)
T 3r27_A 22 PVVHIRGLIDGVVEADLVEALQEFGPI 48 (100)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCE
Confidence 567888888899999999999988843
No 158
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.55 E-value=62 Score=19.85 Aligned_cols=26 Identities=4% Similarity=0.024 Sum_probs=21.0
Q ss_pred ceeeeecccccCCchhhHhhhhhccc
Q 044925 2 RVQYMDTVQIFWPHNTIDSGLVEFSF 27 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~l~~~g~ 27 (103)
|.-|+..+-..+++++|++++..+|-
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~ 43 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGD 43 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCC
Confidence 34577778889999999999998873
No 159
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.53 E-value=61 Score=26.57 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=27.3
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.++++++|..+| ..++.+.|+.+++.+
T Consensus 391 ~IS~eELr~vL~~lG-e~LSdeEIdeLfke~ 420 (440)
T 3u0k_A 391 YISAAELRHVMTNLG-EKLTDEEVDEMIREA 420 (440)
T ss_dssp EECHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 588999999999999 899999999999876
No 160
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=20.52 E-value=47 Score=18.55 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=15.1
Q ss_pred eeecccccCCchhhHhhhhhcc
Q 044925 5 YMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 5 ~~~~~~~~~~~~~i~~~l~~~g 26 (103)
|+..+-..+++++|++.+...|
T Consensus 3 ~v~nLp~~~t~~~l~~~F~~~G 24 (75)
T 1iqt_A 3 FVGGLSPDTPEEKIREYFGGFG 24 (75)
T ss_dssp EESCCCSSCCHHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHHhcC
Confidence 4455556677777777777777
No 161
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=20.52 E-value=53 Score=18.81 Aligned_cols=24 Identities=4% Similarity=-0.069 Sum_probs=19.6
Q ss_pred eeeecccccCCchhhHhhhhhccc
Q 044925 4 QYMDTVQIFWPHNTIDSGLVEFSF 27 (103)
Q Consensus 4 ~~~~~~~~~~~~~~i~~~l~~~g~ 27 (103)
-|+..+-..+++++|...+..+|-
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~~G~ 30 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFSTYGK 30 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCC
Confidence 467777888999999999888873
No 162
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=20.40 E-value=73 Score=18.58 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=22.9
Q ss_pred cCCchhhHhhhhhcccccccHHHHHHHHHHh
Q 044925 12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLF 42 (103)
Q Consensus 12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL 42 (103)
.|+.+++.++|..+| ++.+.+..++..+
T Consensus 43 ~I~~~El~~~l~~~g---~~~~~~~~~~~~~ 70 (91)
T 2pmy_A 43 RLEREEFRALCTELR---VRPADAEAVFQRL 70 (91)
T ss_dssp SEEHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcC---cCHHHHHHHHHHh
Confidence 578889999999998 4677788888866
No 163
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=20.31 E-value=57 Score=19.57 Aligned_cols=45 Identities=7% Similarity=0.092 Sum_probs=33.1
Q ss_pred eeeeecccccCCchhhHhhhhhcccc---------------------cccHHHHHHHHHHhcCCCh
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF---------------------TSQPEKIATLIKLFEKRSA 47 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v---------------------evdaekI~~li~aL~gk~I 47 (103)
.-|+..+-..+++++|++++..+|-| ..+.+.....++.|.|..+
T Consensus 15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 34777788899999999999887622 1256667777777877664
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.30 E-value=62 Score=18.95 Aligned_cols=46 Identities=4% Similarity=0.004 Sum_probs=33.9
Q ss_pred eeeeecccccCCchhhHhhhhhccc-c--------------cccHHHHHHHHHHhcC-CChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSF-F--------------TSQPEKIATLIKLFEK-RSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~-v--------------evdaekI~~li~aL~g-k~I~ 48 (103)
--|+-.+-..+++++|++++..+|- + .-+.+.....+..|.| ..+.
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 3477778888999999999998884 2 2356667777778877 5553
No 165
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=20.27 E-value=55 Score=18.29 Aligned_cols=22 Identities=5% Similarity=0.181 Sum_probs=16.7
Q ss_pred eeecccccCCchhhHhhhhhcc
Q 044925 5 YMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 5 ~~~~~~~~~~~~~i~~~l~~~g 26 (103)
|+..+-..+++++|++.+...|
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~~G 24 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQFG 24 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHTTS
T ss_pred EEecCCCCCCHHHHHHHHHhcC
Confidence 4556667788888888888887
No 166
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.23 E-value=68 Score=19.13 Aligned_cols=46 Identities=2% Similarity=0.010 Sum_probs=33.0
Q ss_pred eeeeecccccCCchhhHhhhhhcccc-------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF-------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v-------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|+.++..+|-| .-+.+.....+..|.|..|.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44777778889999999999988733 12556666777777776554
No 167
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.13 E-value=58 Score=19.22 Aligned_cols=46 Identities=11% Similarity=0.225 Sum_probs=33.3
Q ss_pred eeeeecccccCCchhhHhhhhhcccc------------------------cccHHHHHHHHHHhcCCChH
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFSFF------------------------TSQPEKIATLIKLFEKRSAD 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g~v------------------------evdaekI~~li~aL~gk~I~ 48 (103)
.-|+..+-..+++++|..++..+|-| ..+.+.....+..|.|..|.
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 45777788889999999999887622 12566677777777777654
No 168
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=20.12 E-value=69 Score=19.16 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=19.5
Q ss_pred eeeeecccccCCchhhHhhhhhcc
Q 044925 3 VQYMDTVQIFWPHNTIDSGLVEFS 26 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~l~~~g 26 (103)
.-|+..+-..+++++|..++..+|
T Consensus 25 ~l~V~nlp~~~t~~~l~~~f~~~G 48 (106)
T 1p27_B 25 ILFVTGVHEEATEEDIHDKFAEYG 48 (106)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGS
T ss_pred EEEEeCCCCCCCHHHHHHHHhccC
Confidence 356777778899999999998887
Done!