BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044926
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 166/543 (30%), Positives = 251/543 (46%), Gaps = 37/543 (6%)
Query: 19 FLERAATVYGDSP--SIIYNNITY--TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNV 74
FLERAA ++G S ++ + T+++ + R +L L ++G+ G V+ + N
Sbjct: 23 FLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 82
Query: 75 PALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPP 134
E +FAVP AVL+T N RL + ++ +L H + K++ LF P
Sbjct: 83 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL---------------LFDP 127
Query: 135 DLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIV 194
+L P LV + + + + E+L + DP +R E
Sbjct: 128 NLLP--LVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP----VRV-PERAACG 180
Query: 195 LNYTSGTTMSPKGVVHCHRGIFI--VAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252
+ YT+GTT PKGVV+ HR + + +A + + ++ + V L +PMFH N WC P+A
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 240
Query: 253 AAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXXXXXVHL 311
VG + + D + + +L GVT G P V L++Y L
Sbjct: 241 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY--LESTGHRLKTLRRL 298
Query: 312 VTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXXXXXXXRQG 371
V G+ P +++ R E +G +V GYGLTET +VV K + + G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358
Query: 372 VKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYT 431
+ L + V D + G +DG LGE+ L+G I GY + TR +T DG+F T
Sbjct: 359 L-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 416
Query: 432 GDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGET 491
GD+ V +GY+EIKDR KD+I P V EAAVVA P W E
Sbjct: 417 GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER 476
Query: 492 PCAFVSLKEGSKSKPTEKEMIEY-CRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
P A V + KPT +E+ E+ + + +P VF +E+P+TS GK K LRE
Sbjct: 477 PLAVVVPR---GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQ 533
Query: 551 AEN 553
+N
Sbjct: 534 YKN 536
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 152/517 (29%), Positives = 223/517 (43%), Gaps = 50/517 (9%)
Query: 36 NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTIN 95
++ T++ + + A L ++GI++G V+++ PN L + AV IN
Sbjct: 40 TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPIN 99
Query: 96 TRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXX 155
TRL A VS +L SK+V S A V +A+ PP V
Sbjct: 100 TRLAAPEVSFILSDSGSKVVIYGAPS-APVIDAIR---AQADPPGTV------------- 142
Query: 156 XHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI 215
I D S A +P E D + + YTSGTT PKGVVH H +
Sbjct: 143 --TDWIGADSLAERLRSAAAD-EPAVEC----GGDDNLFIMYTSGTTGHPKGVVHTHESV 195
Query: 216 FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIR 275
A + S V + L LPMFH A G T I + +FDA+ ++ LI
Sbjct: 196 HSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIV 255
Query: 276 RHGVTHMCGAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSH 335
V P +LN + + + +T GAP P A++ + +V
Sbjct: 256 EERVCIGGAVPAILNFMR--QVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQ 313
Query: 336 GYGLTET---GGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAK 392
GY LTE+ G +++S R + T T+V V +
Sbjct: 314 GYALTESCGGGTLLLSEDALRKAGSAG-------------RATMFTDVAVRGDDGVIREH 360
Query: 393 RDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDV 452
+G E+V++ ++ Y P TR D+GWF TGD+G + +GYL IKDR KD+
Sbjct: 361 GEG----EVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDM 415
Query: 453 IIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMI 512
II P V+E AV+ PDE WGE A V +++ +E++++
Sbjct: 416 IISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVV---ADQNEVSEQQIV 472
Query: 513 EYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
EYC RL Y +PK V+F + +P+ TGKI K VLRE
Sbjct: 473 EYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 141/526 (26%), Positives = 223/526 (42%), Gaps = 52/526 (9%)
Query: 36 NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTIN 95
N YT++D ++AS L IGI +G V+ + P+ P A++ N
Sbjct: 46 NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAAN 105
Query: 96 TRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXX 155
++ + ++KL+ ++A E V F + +
Sbjct: 106 PFSTPAELAKHAKASRAKLLI----TQACYYEKVKDFARESD------VKVMCVDSAPDG 155
Query: 156 XHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI 215
H FS P+ + I P D + L Y+SGTT PKGV+ H+G+
Sbjct: 156 CLH--------FSELTQADENEAPQVD-ISPD---DVVALPYSSGTTGLPKGVMLTHKGL 203
Query: 216 FIVAVNTLSDWSVP-----TQPVYLWTLPMFHSNGW-CFPWAMAAVGGTNICIRKFDASI 269
I +V D P ++ V L LPMFH VG + + KF+
Sbjct: 204 -ITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGS 262
Query: 270 IFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESL 329
+ LI ++ V+ APVV ++ + + ++ +G P L T
Sbjct: 263 LLGLIEKYKVSI---APVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRA 319
Query: 330 GF---KVSHGYGLTETGGIVVSC-AWKRNWNXXXXXXXXXXXXRQGVKTTAL--TEVDVL 383
F ++ GYG+TE G ++ C A+ + + G T + E+ ++
Sbjct: 320 KFPQARLGQGYGMTEAGPVLAMCLAFAKE----------PFDIKPGACGTVVRNAEMKIV 369
Query: 384 DPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYL 443
DP++G S R+ GEI +RG IM GYL DP T + + +GW +TGD+G + D L
Sbjct: 370 DPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDEL 427
Query: 444 EIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSK 503
I DR K++I P +++AAVV DE GE P AFV E K
Sbjct: 428 FIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSE--K 485
Query: 504 SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
S+ TE E+ +Y ++ Y K V F++ +PK +GKI + L+E
Sbjct: 486 SQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 137/539 (25%), Positives = 229/539 (42%), Gaps = 65/539 (12%)
Query: 40 YTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLD 99
YT+SD H Q+A++ +G+++ VV ++ PN P A F A N
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 100 ARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHP 159
++ + +KL+ + V P +V++
Sbjct: 149 PAEIAKQAKASNTKLIITE-------ARYVDKIKPLQNDDGVVIVC-------------- 187
Query: 160 NISDDQFFSTYE-----SLVAKGDPEFEWIRPRTEWDP---IVLNYTSGTTMSPKGVVHC 211
I D++ E + + + E + E P + L Y+SGTT PKGV+
Sbjct: 188 -IDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLT 246
Query: 212 HRGIFIVAVNTLSDWSVP-----TQPVYLWTLPMFHSNGWCFPWAMAA---VGGTNICIR 263
H+G+ + +V D P + V L LPMFH + M VG + +
Sbjct: 247 HKGL-VTSVAQQVDGENPNLYFHSDDVILCVLPMFHI--YALNSIMLCGLRVGAAILIMP 303
Query: 264 KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVL 323
KF+ +++ +LI+R VT AP+V ++ + +V +GA P L
Sbjct: 304 KFEINLLLELIQRCKVTV---APMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKEL 360
Query: 324 LRTESLGF---KVSHGYGLTETGGIV-VSCAWKRNWNXXXXXXXXXXXXRQGVKTTAL-- 377
+ F K+ GYG+TE G ++ +S + + + G T +
Sbjct: 361 EDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKE----------PFPVKSGACGTVVRN 410
Query: 378 TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVM 437
E+ ++DP +G S R+ GEI +RG IM GYL +P T + + DGW +TGD+G++
Sbjct: 411 AEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLI 468
Query: 438 HSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVS 497
D L I DR K++I P + + AVVA +E GE P AFV
Sbjct: 469 DDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV 528
Query: 498 LKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR-EIAENMG 555
+ S+ +E ++ ++ ++ Y V F + +PK +GKI + LR ++A +G
Sbjct: 529 --KSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 154/371 (41%), Gaps = 24/371 (6%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW 246
R D + YTSGTT KG H + ++ + W V + LP++H++G
Sbjct: 152 RGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGL 211
Query: 247 CFPWAMAAVG-GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXX 305
+ G+ I + KFD I DL R T + G P L
Sbjct: 212 FVASNVTLFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQ---SPRLTKET 266
Query: 306 XXXVHLVTAGAPPPAAVLLR--TESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXX 363
L +G+ P A R + G V YG TET N N
Sbjct: 267 TGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTET-----------NXNTSNPYDG 315
Query: 364 XXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423
G ++ V DP++G R +G I ++G + GY + P T+
Sbjct: 316 DRVPGAVGPALPGVS-ARVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEF 372
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVAR 483
DDG+F TGD+G + GY+ I R KD++I P V E+AV+
Sbjct: 373 RDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGV 432
Query: 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543
P +GE A V +G+ E +++ G+L + PK V+F+D+LP+ + GK+Q
Sbjct: 433 PHADFGEGVTAVVVRDKGATID--EAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQ 490
Query: 544 KFVLREIAENM 554
K VLRE +++
Sbjct: 491 KNVLRETYKDI 501
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 127/552 (23%), Positives = 214/552 (38%), Gaps = 59/552 (10%)
Query: 20 LERAATVYGDSPSII-----YNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNV 74
L +A Y P I + + T+S+ +LA ++ G+ H ++V S N
Sbjct: 60 LHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN- 118
Query: 75 PALYELHFAVPFAAAVLNTI-----NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAV 129
L F +P A+ + N + R + L Q +VF RAL +
Sbjct: 119 ----SLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCS--KRALQK--- 169
Query: 130 SLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWI---RP 186
+ K P + I + +S ES + G E+++I
Sbjct: 170 -ILGVQKKLPIIQKIVILDS-------REDYMGKQSMYSFIESHLPAGFNEYDYIPDSFD 221
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN----TLSDWSVPTQPVYLWTLPMFH 242
R +++N +SG+T PKGV H+ I + + + +P + L +P H
Sbjct: 222 RETATALIMN-SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAI-LTVIPFHH 279
Query: 243 SNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXX 302
G G + + +F+ + ++ + + A +V + S +
Sbjct: 280 GFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQS---ALLVPTLFSFFAKSTLVD 336
Query: 303 XXXXXXVHLVTAGAPPPAAVLLRTESLGFK---VSHGYGLTETGGIVVSCAWKRNWNXXX 359
+H + +G P A + + FK + GYGLTET ++ R+
Sbjct: 337 KYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGA 396
Query: 360 XXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
K ++D +G + + GE+ ++G IM GY+ +P T
Sbjct: 397 CG-----------KVVPFFSAKIVDLDTGKTLGVN--QRGELCVKGPMIMKGYVNNPEAT 443
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAA 479
+ DGW ++GD+ DGY I DR K +I P + +A
Sbjct: 444 SALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAG 503
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL-PHYMVPKTVVFMDELPKTS 538
V PD GE P A V L+EG TE+E+++Y G++ + V F+DE+PK
Sbjct: 504 VAGIPDPDAGELPAAVVVLEEGKTM--TEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGL 561
Query: 539 TGKIQKFVLREI 550
TGKI +REI
Sbjct: 562 TGKIDARKIREI 573
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 152/367 (41%), Gaps = 23/367 (6%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW 246
R D + YTSGTT G + H + ++ + W V + LP++H++G
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGL 211
Query: 247 CFPWAMAAVG-GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXX 305
+ G+ I + FD I DL+ R T + G P L
Sbjct: 212 FVASNVTLFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ---SPRLTXET 266
Query: 306 XXXVHLVTAGAPPPAAVLLR--TESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXX 363
+ L +G+ P A R + G V YG+TET N N
Sbjct: 267 TGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDG 315
Query: 364 XXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423
G ++ V DP++G R +G I + G + GY + P T
Sbjct: 316 DRVPGAVGPALPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEF 372
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVAR 483
DDG+F TGD+G + GY+ I R D++I P V E+AV+
Sbjct: 373 RDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGV 432
Query: 484 PDEFWGETPCAFVSL-KEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
P +GE AFV L +E + S+ +E+ + RL + +P V+F+D+LP+ + G +
Sbjct: 433 PHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAV 492
Query: 543 QKFVLRE 549
Q VLRE
Sbjct: 493 QXNVLRE 499
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 151/366 (41%), Gaps = 24/366 (6%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW 246
R D + YTSGTT G + H + ++ + W V + LP++H++G
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGL 211
Query: 247 CFPWAMAAVG-GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXX 305
+ G+ I + FD I DL+ R T + G P L
Sbjct: 212 FVASNVTLFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ---SPRLTXET 266
Query: 306 XXXVHLVTAGAPPPAAVLLR--TESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXX 363
+ L +G+ P A R + G V YG+TET N N
Sbjct: 267 TGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDG 315
Query: 364 XXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423
G ++ V DP++G R +G I + G + GY + P T
Sbjct: 316 DRVPGAVGPALPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEF 372
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVAR 483
DDG+F TGD+G + GY+ I R D++I P V E+AV+
Sbjct: 373 RDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGV 432
Query: 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543
P +GE AFV L + P+E +++ G+L + +P V+F+D+LP+ + G +Q
Sbjct: 433 PHADFGEGVTAFVVLXR--EFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQ 490
Query: 544 KFVLRE 549
VLRE
Sbjct: 491 XNVLRE 496
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 167/389 (42%), Gaps = 33/389 (8%)
Query: 177 GDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLW 236
G +FE ++ E D ++ YT GTT PKGV H F +A N L +V T +
Sbjct: 167 GSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTH---FNLAANALQ-LAVATGLSHXD 222
Query: 237 TL----PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNML 292
T+ P FHS + VG + F+ + + I ++ T P LN+L
Sbjct: 223 TIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVL 282
Query: 293 SNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLG--------FKVSHGYGLTETGG 344
N T P A++ + L + + +G TE
Sbjct: 283 VNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACP 342
Query: 345 IVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404
V + R QGV + + E+ V+ + G S GEIV+R
Sbjct: 343 XVTTNPPLR----------LDKSTTQGVPXSDI-ELKVISLEDGRELGVGES--GEIVIR 389
Query: 405 GGCIMLGYLKDPIGTRKCMTDD----GWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXX 460
G I GY K ++C D +F TGDVG + +G+L +DR K+VI
Sbjct: 390 GPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449
Query: 461 XXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLP 520
AV + AV+ +PDE GE P AF+ LK + K E+++IE+ R R+
Sbjct: 450 APFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERIS 509
Query: 521 HYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
Y + V F++ELP+T++GK+ + +LRE
Sbjct: 510 GYKRVREVEFVEELPRTASGKLLRRLLRE 538
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 162/384 (42%), Gaps = 37/384 (9%)
Query: 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIV-LNYTSGTTMSPKGVVHCHRGIFIVAVNTL 223
Q+ ++ E++V K P + D I + +TSGTT K V R + A+
Sbjct: 138 QYDTSNETVVPKESPS-NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK 196
Query: 224 SDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMC 283
+L LP++H +G G T + KF+A I +I+ +TH+
Sbjct: 197 ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHIS 256
Query: 284 GAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETG 343
P LN L ++ GA A ++ + + +G+TET
Sbjct: 257 LVPQTLNWL-----MQQGLHEPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETC 311
Query: 344 GIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403
++ + G+ + A +V + +P ++G GE+++
Sbjct: 312 SQFLTATPE---------MLHARPDTVGMPS-ANVDVKIKNPN------KEGH--GELMI 353
Query: 404 RGGCIMLGYL--KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXX 461
+G +M GYL D GT ++G+F TGD+ + +GY+ I DR KD+II
Sbjct: 354 KGANVMNGYLYPTDLTGT----FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIY 409
Query: 462 XXXXXXXXXXXPAVNEAAVVARPDEFWGETP-CAFVSLKEGSKSKPTEKEMIEYCRGRLP 520
P +++A V PD+ WG+ P FVS + SK+ ++I Y L
Sbjct: 410 PYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA-----QLIAYLSKHLA 464
Query: 521 HYMVPKTVVFMDELPKTSTGKIQK 544
Y VPK +D LP TSTGK+Q+
Sbjct: 465 KYKVPKHFEKVDTLPYTSTGKLQR 488
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 168/415 (40%), Gaps = 47/415 (11%)
Query: 36 NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTIN 95
++ T++ + + A L ++GI++G V+++ PN L + AV IN
Sbjct: 26 TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPIN 85
Query: 96 TRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXX 155
TRL A VS +L SK+V S A V +A+ PP V
Sbjct: 86 TRLAAPEVSFILSDSGSKVVIYGAPS-APVIDAIR---AQADPPGTVT------------ 129
Query: 156 XHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI 215
I D S A +P E D + + YTSGTT PKGVVH H +
Sbjct: 130 ---DWIGADSLAERLRSAAAD-EPAVECGGD----DNLFIMYTSGTTGHPKGVVHTHESV 181
Query: 216 FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIR 275
A + S V + L LPMFH A G T I + +FDA+ ++ LI
Sbjct: 182 HSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIV 241
Query: 276 RHGVTHMCGAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSH 335
V P +LN + + + +T GAP P A++ + +V
Sbjct: 242 EERVCIGGAVPAILNFMR--QVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQ 299
Query: 336 GYGLTET---GGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAK 392
GY LTE+ G +++S R + T T+V V +
Sbjct: 300 GYALTESCGGGTLLLSEDALRKAGSAG-------------RATMFTDVAVRGDDGVIREH 346
Query: 393 RDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKD 447
+ GE+V++ ++ Y P TR D+GWF TGD+G + +GYL IKD
Sbjct: 347 GE----GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 148/366 (40%), Gaps = 24/366 (6%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW 246
R D + YTSGTT G + H + ++ + W V + LP++H++G
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGL 211
Query: 247 CFPWAMAAVG-GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXX 305
+ G+ I + FD I DL+ R T + G P L
Sbjct: 212 FVASNVTLFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ---SPRLTXET 266
Query: 306 XXXVHLVTAGAPPPAAVLLR--TESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXX 363
+ L +G+ P A R + G V YG+TET N N
Sbjct: 267 TGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDG 315
Query: 364 XXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423
G ++ V DP++G R +G I + G + GY + P T
Sbjct: 316 DRVPGAVGPALPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEF 372
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVAR 483
DDG+F TGD+G + GY+ I R D++I P V E+AV+
Sbjct: 373 RDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGV 432
Query: 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543
P +GE A V G+ E +++ G+L + +P V+F+D+LP+ + G +Q
Sbjct: 433 PHADFGEGVTAVVVRDXGATID--EAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQ 490
Query: 544 KFVLRE 549
VLRE
Sbjct: 491 XNVLRE 496
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 156/381 (40%), Gaps = 47/381 (12%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY----------LW 236
R E +++N +SG+T PKGV H N ++ +S P+Y L
Sbjct: 190 RKEQVALIMN-SSGSTGLPKGVQLTHE-------NIVTRFSHARDPIYGNQVSPGTAVLT 241
Query: 237 TLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYR 296
+P H G G + + KFD ++ + T++ P + +L+ +
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN--K 299
Query: 297 XXXXXXXXXXXXVHLVTAGAPPPA----AVLLRTESLGFKVSHGYGLTETGGIVVSCAWK 352
V + + GAP AV R G V GYGLTET ++
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIITPEG 357
Query: 353 RNWNXXXXXXXXXXXXRQGVKTTALTEVDV--LDPKSGVSAKRDGSTLGEIVLRGGCIML 410
+ K L + V LD K + R GE+ ++G +M
Sbjct: 358 DDKPGASG------------KVVPLFKAKVIDLDTKKSLGPNRR----GEVCVKGPMLMK 401
Query: 411 GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXX 470
GY+ +P T++ + ++GW +TGD+G + + I DR K +I
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 471 XXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH-YMVPKTVV 529
P++ +A V PD GE P A V L+ G TEKE+++Y ++ + + V
Sbjct: 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM--TEKEVMDYVASQVSNAKRLRGGVR 519
Query: 530 FMDELPKTSTGKIQKFVLREI 550
F+DE+PK TGKI +REI
Sbjct: 520 FVDEVPKGLTGKIDGRAIREI 540
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 155/381 (40%), Gaps = 47/381 (12%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY----------LW 236
R E +++N +SG+T PKGV H N ++ +S P+Y L
Sbjct: 190 RKEQVALIMN-SSGSTGLPKGVQLTHE-------NIVTRFSHARDPIYGNQVSPGTAVLT 241
Query: 237 TLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYR 296
+P H G G + + KFD ++ + T + P + +L+ +
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN--K 299
Query: 297 XXXXXXXXXXXXVHLVTAGAPPPA----AVLLRTESLGFKVSHGYGLTETGGIVVSCAWK 352
V + + GAP AV R G V GYGLTET ++
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIITPEG 357
Query: 353 RNWNXXXXXXXXXXXXRQGVKTTALTEVDV--LDPKSGVSAKRDGSTLGEIVLRGGCIML 410
+ K L + V LD K + R GE+ ++G +M
Sbjct: 358 DDKPGASG------------KVVPLFKAKVIDLDTKKSLGPNRR----GEVCVKGPMLMK 401
Query: 411 GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXX 470
GY+ +P T++ + ++GW +TGD+G + + I DR K +I
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 471 XXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH-YMVPKTVV 529
P++ +A V PD GE P A V L+ G TEKE+++Y ++ + + V
Sbjct: 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM--TEKEVMDYVASQVSNAKRLRGGVR 519
Query: 530 FMDELPKTSTGKIQKFVLREI 550
F+DE+PK TGKI +REI
Sbjct: 520 FVDEVPKGLTGKIDGRAIREI 540
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 155/381 (40%), Gaps = 47/381 (12%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY----------LW 236
R E +++N +SG+T PKGV H N ++ +S P+Y L
Sbjct: 190 RKEQVALIMN-SSGSTGLPKGVQLTHE-------NIVTRFSHARDPIYGNQVSPGTAVLT 241
Query: 237 TLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYR 296
+P H G G + + KFD ++ + T + P + +L+ +
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN--K 299
Query: 297 XXXXXXXXXXXXVHLVTAGAPPPA----AVLLRTESLGFKVSHGYGLTETGGIVVSCAWK 352
V + + GAP AV R G V GYGLTET ++
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIITPEG 357
Query: 353 RNWNXXXXXXXXXXXXRQGVKTTALTEVDV--LDPKSGVSAKRDGSTLGEIVLRGGCIML 410
+ K L + V LD K + R GE+ ++G +M
Sbjct: 358 DDKPGASG------------KVVPLFKAKVIDLDTKKSLGPNRR----GEVCVKGPMLMK 401
Query: 411 GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXX 470
GY+ +P T++ + ++GW +TGD+G + + I DR K +I
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 471 XXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH-YMVPKTVV 529
P++ +A V PD GE P A V L+ G TEKE+++Y ++ + + V
Sbjct: 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM--TEKEVMDYVASQVSNAKRLRGGVR 519
Query: 530 FMDELPKTSTGKIQKFVLREI 550
F+DE+PK TGKI +REI
Sbjct: 520 FVDEVPKGLTGKIDGRAIREI 540
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 123/571 (21%), Positives = 215/571 (37%), Gaps = 59/571 (10%)
Query: 2 EQLKPSPANSTPL---TPLVFLERAATVYGDSPSII-----YNNITYTWSDTHHRCLQLA 53
+ +K PA PL T L +A Y P I + + T+++ ++LA
Sbjct: 10 KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLA 69
Query: 54 SSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSK 113
++ G++ H + V S N + F + N + R + + Q
Sbjct: 70 EAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPT 129
Query: 114 LVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESL 173
+VFV + P K ++I +D Q F + +
Sbjct: 130 VVFVSKKGLQKILNVQKKLPIIQK----IIIMDSK-------------TDYQGFQSMYTF 172
Query: 174 VAKGDP----EFEWIRPRTEWDP---IVLNYTSGTTMSPKGVVHCHRGI---FIVAVNTL 223
V P E++++ + D +++N +SG+T PKGV HR + F A + +
Sbjct: 173 VTSHLPPGFNEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVALPHRALAVRFSHARDPI 231
Query: 224 SDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMC 283
+ L +P H G G + + +F+ + ++ + +
Sbjct: 232 FGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSAL 291
Query: 284 GAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFK---VSHGYGLT 340
P + + L+ +H + +G P + + + F + GYGLT
Sbjct: 292 LVPTLFSFLAK---STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 348
Query: 341 ETGGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400
ET ++ + K E V+D +G + + GE
Sbjct: 349 ETTSAILITPKGDDKPGAVG------------KVVPFFEAKVVDLDTGKTLGVN--QRGE 394
Query: 401 IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXX 460
+ +RG IM GY+ +P T + DGW ++GD+ D + I DR K +I
Sbjct: 395 LSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQV 454
Query: 461 XXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL- 519
P + +A V PD+ GE P A V L+ G TEKE+++Y ++
Sbjct: 455 APAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM--TEKEIVDYVASQVT 512
Query: 520 PHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
+ VVF+DE+PK TGK+ +REI
Sbjct: 513 TAKKLRGGVVFVDEVPKGLTGKLDARKIREI 543
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 134/553 (24%), Positives = 210/553 (37%), Gaps = 66/553 (11%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L A YGD +I N +++ + R +LA+ +GI + V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV-FVDFHSRA--LVREAVSLFPPD 135
E+ FA+ RL A V L H S++ F +F A ++ +A S F
Sbjct: 90 EVIFAL-----------FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF--- 135
Query: 136 LKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIR-PRTEW-DPI 193
P + + E + D E ++ P + D
Sbjct: 136 ----------DYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVA 185
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253
L + G+T K + H ++ + VYL LPM H+ P +
Sbjct: 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLG 245
Query: 254 AV--GGTNICIRKFDASIIFDLIRRHGVTHMCGAP----VVLNMLSNYRXXXXXXXXXXX 307
+ GG + F LI R VT P V ++ S+ R
Sbjct: 246 VLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQV--- 302
Query: 308 XVHLVTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXXXXX 366
L GA A R +++ G + +G+ E G+V N+
Sbjct: 303 ---LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE--GLV-------NYTRLDDPEEIIV 350
Query: 367 XXRQGVKTTALTEVDVLDPKSGVSAKRD---GSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423
QG + E V D RD G T G ++ RG + GY K
Sbjct: 351 NT-QGKPMSPYDESRVWDDHD-----RDVKPGET-GHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVAR 483
T+DG++ TGD+ + DGY+ ++ R+KD I PAV++AA+V+
Sbjct: 404 TEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSM 463
Query: 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKI 542
PD+F GE C F+ ++ P E+ + R R L Y +P V F++ P+T GK+
Sbjct: 464 PDQFLGERSCVFIIPRD---EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKV 520
Query: 543 QKFVLRE-IAENM 554
K LRE I+E +
Sbjct: 521 SKKALREAISEKL 533
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 124/571 (21%), Positives = 215/571 (37%), Gaps = 59/571 (10%)
Query: 2 EQLKPSPANSTPL---TPLVFLERAATVYGDSPSII-----YNNITYTWSDTHHRCLQLA 53
+ +K PA PL T L +A Y P I + + T+++ ++LA
Sbjct: 10 KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLA 69
Query: 54 SSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSK 113
++ G++ H + V S N + F + N + R + + Q
Sbjct: 70 EAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPT 129
Query: 114 LVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESL 173
+VFV + P K ++I +D Q F + +
Sbjct: 130 VVFVSKKGLQKILNVQKKLPIIQK----IIIMDSK-------------TDYQGFQSMYTF 172
Query: 174 VAKGDP----EFEWIRPRTEWDP---IVLNYTSGTTMSPKGVVHCHRGI---FIVAVNTL 223
V P E++++ + D +++N +SG+T PKGV HR F A + +
Sbjct: 173 VTSHLPPGFNEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVALPHRTACVRFSHARDPI 231
Query: 224 SDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMC 283
+ L +P H G G + + +F+ + ++ + +
Sbjct: 232 FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ--- 288
Query: 284 GAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFK---VSHGYGLT 340
A +V + S + +H + +G P + + + F + GYGLT
Sbjct: 289 SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 348
Query: 341 ETGGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400
ET ++ + K E V+D +G + + GE
Sbjct: 349 ETTSAILITPEGDDKPGAVG------------KVVPFFEAKVVDLDTGKTLGVN--QRGE 394
Query: 401 IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXX 460
+ +RG IM GY+ +P T + DGW ++GD+ D + I DR K +I
Sbjct: 395 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 454
Query: 461 XXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL- 519
P + +A V PD+ GE P A V L+ G TEKE+++Y ++
Sbjct: 455 APAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM--TEKEIVDYVASQVT 512
Query: 520 PHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
+ VVF+DE+PK TGK+ +REI
Sbjct: 513 TAKKLRGGVVFVDEVPKGLTGKLDARKIREI 543
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 124/571 (21%), Positives = 215/571 (37%), Gaps = 59/571 (10%)
Query: 2 EQLKPSPANSTPL---TPLVFLERAATVYGDSPSII-----YNNITYTWSDTHHRCLQLA 53
+ +K PA PL T L +A Y P I + + T+++ ++LA
Sbjct: 5 KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLA 64
Query: 54 SSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSK 113
++ G++ H + V S N + F + N + R + + Q
Sbjct: 65 EAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPT 124
Query: 114 LVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESL 173
+VFV + P K ++I +D Q F + +
Sbjct: 125 VVFVSKKGLQKILNVQKKLPIIQK----IIIMDSK-------------TDYQGFQSMYTF 167
Query: 174 VAKGDP----EFEWIRPRTEWDP---IVLNYTSGTTMSPKGVVHCHRGI---FIVAVNTL 223
V P E++++ + D +++N +SG+T PKGV HR F A + +
Sbjct: 168 VTSHLPPGFNEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVALPHRTACVRFSHARDPI 226
Query: 224 SDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMC 283
+ L +P H G G + + +F+ + ++ + +
Sbjct: 227 FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ--- 283
Query: 284 GAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFK---VSHGYGLT 340
A +V + S + +H + +G P + + + F + GYGLT
Sbjct: 284 SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 343
Query: 341 ETGGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400
ET ++ + K E V+D +G + + GE
Sbjct: 344 ETTSAILITPEGDDKPGAVG------------KVVPFFEAKVVDLDTGKTLGVNQR--GE 389
Query: 401 IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXX 460
+ +RG IM GY+ +P T + DGW ++GD+ D + I DR K +I
Sbjct: 390 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449
Query: 461 XXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL- 519
P + +A V PD+ GE P A V L+ G TEKE+++Y ++
Sbjct: 450 APAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM--TEKEIVDYVASQVT 507
Query: 520 PHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
+ VVF+DE+PK TGK+ +REI
Sbjct: 508 TAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 124/571 (21%), Positives = 215/571 (37%), Gaps = 59/571 (10%)
Query: 2 EQLKPSPANSTPL---TPLVFLERAATVYGDSPSII-----YNNITYTWSDTHHRCLQLA 53
+ +K PA PL T L +A Y P I + + T+++ ++LA
Sbjct: 5 KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLA 64
Query: 54 SSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSK 113
++ G++ H + V S N + F + N + R + + Q
Sbjct: 65 EAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPT 124
Query: 114 LVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESL 173
+VFV + P K ++I +D Q F + +
Sbjct: 125 VVFVSKKGLQKILNVQKKLPIIQK----IIIMDSK-------------TDYQGFQSMYTF 167
Query: 174 VAKGDP----EFEWIRPRTEWDP---IVLNYTSGTTMSPKGVVHCHRGI---FIVAVNTL 223
V P E++++ + D +++N +SG+T PKGV HR F A + +
Sbjct: 168 VTSHLPPGFNEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVALPHRTACVRFSHARDPI 226
Query: 224 SDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMC 283
+ L +P H G G + + +F+ + ++ + +
Sbjct: 227 FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ--- 283
Query: 284 GAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFK---VSHGYGLT 340
A +V + S + +H + +G P + + + F + GYGLT
Sbjct: 284 SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 343
Query: 341 ETGGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400
ET ++ + K E V+D +G + + GE
Sbjct: 344 ETTSAILITPEGDDKPGAVG------------KVVPFFEAKVVDLDTGKTLGVNQR--GE 389
Query: 401 IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXX 460
+ +RG IM GY+ +P T + DGW ++GD+ D + I DR K +I
Sbjct: 390 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449
Query: 461 XXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL- 519
P + +A V PD+ GE P A V L+ G TEKE+++Y ++
Sbjct: 450 APAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM--TEKEIVDYVASQVT 507
Query: 520 PHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
+ VVF+DE+PK TGK+ +REI
Sbjct: 508 TAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 127/523 (24%), Positives = 208/523 (39%), Gaps = 72/523 (13%)
Query: 51 QLASSLLS--IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQ 108
Q A+++LS G+ RG V+VV P VP + + A + ++ + + LQ
Sbjct: 84 QQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQ 143
Query: 109 HCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFS 168
++K + V + V+ P L+ LV S D + +
Sbjct: 144 MSKAKAIVAGDEVIQEV-DTVASECPSLRIKLLV----------------SEKSCDGWLN 186
Query: 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV 228
++ L+ + + ++ + + +TSGT+ PK H + + + A + W+
Sbjct: 187 -FKKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKA-KMDAGWTG 243
Query: 229 PTQPVYLWTLPMFHSNGWCF--------PWAMAAVGGTNICIRKFDASIIFDLIRRHGVT 280
+WT+ GW PWA+ A ++ + KFD +I + + +
Sbjct: 244 LQASDIMWTI---SDTGWILNILCSLMEPWALGACTFVHL-LPKFDPLVILKTLSSYPIK 299
Query: 281 HMCGAPVVLNML-----SNYRXXXXXXXXXXXXVHLVTAGAP--PPAAVLLRTESLGFKV 333
M GAP+V ML S+Y+ + VT G P R ++ G +
Sbjct: 300 SMMGAPIVYRMLLQQDLSSYKFPHLQ--------NCVTVGESLLPETLENWRAQT-GLDI 350
Query: 334 SHGYGLTETGGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALT--EVDVLDPKSGVSA 391
YG TETG ++C + + G TA + +V ++D K V
Sbjct: 351 RESYGQTETG---LTCMVSKT-----------MKIKPGYMGTAASCYDVQIIDDKGNVLP 396
Query: 392 KRDGSTLGEIV--LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS 449
+G V +R I GY+ +P T + D W GD G+ DGY + R+
Sbjct: 397 PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRA 455
Query: 450 KDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE- 508
D+I PAV E AV++ PD GE AFV L S E
Sbjct: 456 DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQ 515
Query: 509 --KEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
KE+ ++ + Y P+ + F+ LPKT TGKIQ+ LR+
Sbjct: 516 LTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 127/523 (24%), Positives = 208/523 (39%), Gaps = 72/523 (13%)
Query: 51 QLASSLLS--IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQ 108
Q A+++LS G+ RG V+VV P VP + + A + ++ + + LQ
Sbjct: 84 QQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQ 143
Query: 109 HCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFS 168
++K + V + V+ P L+ LV S D + +
Sbjct: 144 MSKAKAIVAGDEVIQEV-DTVASECPSLRIKLLV----------------SEKSCDGWLN 186
Query: 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV 228
++ L+ + + ++ + + +TSGT+ PK H + + + A + W+
Sbjct: 187 -FKKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKA-KMDAGWTG 243
Query: 229 PTQPVYLWTLPMFHSNGWCF--------PWAMAAVGGTNICIRKFDASIIFDLIRRHGVT 280
+WT+ GW PWA+ A ++ + KFD +I + + +
Sbjct: 244 LQASDIMWTI---SDTGWILNILCSLMEPWALGACTFVHL-LPKFDPLVILKTLSSYPIK 299
Query: 281 HMCGAPVVLNML-----SNYRXXXXXXXXXXXXVHLVTAGAP--PPAAVLLRTESLGFKV 333
M GAP+V ML S+Y+ + VT G P R ++ G +
Sbjct: 300 SMMGAPIVYRMLLQQDLSSYKFPHLQ--------NCVTVGESLLPETLENWRAQT-GLDI 350
Query: 334 SHGYGLTETGGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALT--EVDVLDPKSGVSA 391
YG TETG ++C + + G TA + +V ++D K V
Sbjct: 351 RESYGQTETG---LTCMVSKT-----------MKIKPGYMGTAASCYDVQIIDDKGNVLP 396
Query: 392 KRDGSTLGEIV--LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS 449
+G V +R I GY+ +P T + D W GD G+ DGY + R+
Sbjct: 397 PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRA 455
Query: 450 KDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE- 508
D+I PAV E AV++ PD GE AFV L S E
Sbjct: 456 DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQ 515
Query: 509 --KEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
KE+ ++ + Y P+ + F+ LPKT TGKIQ+ LR+
Sbjct: 516 LTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 155/369 (42%), Gaps = 30/369 (8%)
Query: 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD-WSVPTQPVYLWTLPMFHSNGWC 247
+ DP ++ YTSGTT PKG V R + ++ L+D W + V + LP+FH +G
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRAL-ATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212
Query: 248 FP-WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXXX 306
GG+ + +F + G T + G P + + ++
Sbjct: 213 LGILGPLRRGGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHRIAETLPADPELAKAL 271
Query: 307 XXVHLVTAGAPPPAAVLLR-----TESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXX 361
L+ +G+ AA+ + + G +V YG+TET +++ + + +
Sbjct: 272 AGARLLVSGS---AALPVHDHERIAAATGRRVIERYGMTET---LMNTSVRADGEP---- 321
Query: 362 XXXXXXXRQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
R G L E+ +++ A DG ++GEI +RG + YL P T
Sbjct: 322 -------RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDR-SKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T+DG+F TGD+ V DGY+ I R + D+I P V EA
Sbjct: 375 AAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREA 434
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AV PD GE A++ + + P + ++ RL + P+ V ++D +P+
Sbjct: 435 AVTGEPDPDLGERIVAWI-VPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRND 493
Query: 539 TGKIQKFVL 547
GKI K L
Sbjct: 494 MGKIMKRAL 502
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXX 458
G ++ RG + GY K T+DG++ TGD+ + DGY+ ++ R+KD I
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 459 XXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR 518
PAV++AA V+ PD+F GE C F+ ++ P E+ + R R
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRD---EAPKAAELKAFLRER 495
Query: 519 -LPHYMVPKTVVFMDELPKTSTGKIQKFVLRE-IAENM 554
L Y +P V F++ P+T GK+ K LRE I+E +
Sbjct: 496 GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 27/131 (20%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L A YGD +I N +++ + R +LA+ +GI + V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV----------------DFHSR 122
E+ FA+ RL A V L H S++ + F R
Sbjct: 90 EVIFAL-----------FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR 138
Query: 123 ALVREAVSLFP 133
+L R+ S P
Sbjct: 139 SLARQVQSKLP 149
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 119/560 (21%), Positives = 201/560 (35%), Gaps = 80/560 (14%)
Query: 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSP 72
PLT ++ A+ DS ++I ++ + + LA SL GI G V
Sbjct: 28 PLTDILTRHAAS----DSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLG 83
Query: 73 NVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLF 132
NV LY FA+ +L V L H +S+L + +
Sbjct: 84 NVAELYITFFAL-----------LKLGVAPVLALFSHQRSEL---------------NAY 117
Query: 133 PPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTY----------ESLVAKGD---- 178
++P L+ H S D F +T+ + L G+
Sbjct: 118 ASQIEPALLI-----------ADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQ 166
Query: 179 -----PEFEWIRPRTEWDPIV-LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP 232
P ++ + D + + GTT +PK + H + ++ Q
Sbjct: 167 DAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQT 226
Query: 233 VYLWTLPMFHSNGWCFPWAMAA--VGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLN 290
YL +P H+ P ++ GGT + A++ F LI +H V P ++
Sbjct: 227 RYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVS 286
Query: 291 MLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRT-ESLGFKVSHGYGLTETGGIVVSC 349
+ L GA A + R +G ++ +G+ E G+V
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE--GLV--- 341
Query: 350 AWKRNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIM 409
N+ QG EV V D + + +G ++ RG
Sbjct: 342 ----NYTRLDDSAEKIIHT-QGYPMCPDDEVWVADAEGNPLPQ---GEVGRLMTRGPYTF 393
Query: 410 LGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXX 469
GY K P +G++ +GD+ + +GY+ ++ R KD I
Sbjct: 394 RGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLL 453
Query: 470 XXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVV 529
PAV AA+V+ DE GE CA++ +KE ++ + + E + + +P V
Sbjct: 454 LRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQG---IAEFKLPDRVE 510
Query: 530 FMDELPKTSTGKIQKFVLRE 549
+D LP T+ GK+ K LR+
Sbjct: 511 CVDSLPLTAVGKVDKKQLRQ 530
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/367 (25%), Positives = 144/367 (39%), Gaps = 30/367 (8%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244
R P + YTSGTT PK + R ++ ++T V L +P++H
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209
Query: 245 GW-CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXX 303
G+ A A+ GT + + +F L+++ VT + P L+ L+
Sbjct: 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL 269
Query: 304 XXXXXVHLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXX 361
H+ AGA P AVL + G KV +GYG TE ++ + R
Sbjct: 270 KLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEA----MNSLYMRQ------- 317
Query: 362 XXXXXXXRQGVKTTA--LTEVDVLDPKSGVSAKRDGSTLGE-IVLRGGCIMLGYLKDPIG 418
+ G + +EV ++ GV GE IV +GYL P
Sbjct: 318 ------PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T + + DGW+ T DV V +G + I R D+II P V E
Sbjct: 372 TAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV 430
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKT 537
V+ D+ WG++ A V + G + + +CR L + PK +D+LPK
Sbjct: 431 VVIGLADQRWGQSVTACVVPRLGETL--SADALDTFCRSSELADFKRPKRYFILDQLPKN 488
Query: 538 STGKIQK 544
+ K+ +
Sbjct: 489 ALNKVLR 495
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 125/565 (22%), Positives = 208/565 (36%), Gaps = 63/565 (11%)
Query: 21 ERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSL-LSIGISRGHVVSVVSPNVPALYE 79
++A GD P Y + T+ + Q+A L S+G+ +G V+V P VP
Sbjct: 98 KKAIIFEGDEPGQGY---SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154
Query: 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR--ALVREAVSLFPPDLK 137
A+ A+ + + + ++ + SK+V S V E + L+
Sbjct: 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR 214
Query: 138 PPPLV--LIXXXXXXXXXXXXHHPN----ISDDQFFSTYESLVAKGDPEFEWIRPRTEWD 191
P V ++ H P ++ + + TY P D
Sbjct: 215 ETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCT-----------PVDSED 263
Query: 192 PIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS-DWSVPTQPVYLWTLPMFHSNGWCFPW 250
P+ L YTSG+T +PKGV H G + A+ T+ + + V+ + G +
Sbjct: 264 PLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVV 323
Query: 251 AMAAVGGTNICIRKF-----DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXX 305
+ G + + + S +D+I H VT AP L +L
Sbjct: 324 YGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSL 383
Query: 306 XXXVHLVTAGAPPPAAVL-LRTESLG---FKVSHGYGLTETGGIVVSCAWKRNWNXXXXX 361
L + G P A V +E +G + Y TE+G +V+
Sbjct: 384 KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT-----------PL 432
Query: 362 XXXXXXXRQGVKTTALTEVD--VLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
+ G + +D VLDP +G + ++ E VL + +
Sbjct: 433 AGGVTPMKPGSASFPFFGIDAVVLDPNTG---EELNTSHAEGVLAVKAAWPSFARTIWKN 489
Query: 420 RKCMTDD------GWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXP 473
D G+++TGD DGY+ I R DV+ P
Sbjct: 490 HDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDP 549
Query: 474 AVNEAAVVARPDEFWGETPCAFVSLKEGS--------KSKPTEKEMIEYCRGRLPHYMVP 525
V E AVV D+ G+ AFV LK S + + +K ++ R + + P
Sbjct: 550 IVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAP 609
Query: 526 KTVVFMDELPKTSTGKIQKFVLREI 550
K ++ +D+LPKT +GKI + +LR+I
Sbjct: 610 KLIILVDDLPKTRSGKIMRRILRKI 634
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 143/367 (38%), Gaps = 30/367 (8%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244
R P + YTSGTT PK + R ++ ++T V L +P++H
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209
Query: 245 GW-CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXX 303
G+ A A+ GT + + +F L+++ VT + P L+ L+
Sbjct: 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL 269
Query: 304 XXXXXVHLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXX 361
H+ AGA P AVL + G KV + YG TE ++ + R
Sbjct: 270 KLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEA----MNSLYMRQ------- 317
Query: 362 XXXXXXXRQGVKTTA--LTEVDVLDPKSGVSAKRDGSTLGE-IVLRGGCIMLGYLKDPIG 418
+ G + +EV ++ GV GE IV +GYL P
Sbjct: 318 ------PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T + + DGW+ T DV V +G + I R D+II P V E
Sbjct: 372 TAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV 430
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKT 537
V+ D+ WG++ A V + G + + +CR L + PK +D+LPK
Sbjct: 431 VVIGLADQRWGQSVTACVVPRLGETL--SADALDTFCRSSELADFKRPKRYFILDQLPKN 488
Query: 538 STGKIQK 544
+ K+ +
Sbjct: 489 ALNKVLR 495
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/367 (25%), Positives = 143/367 (38%), Gaps = 30/367 (8%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244
R P + YTSGTT PK + R ++ ++T V L +P++H
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209
Query: 245 GW-CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXX 303
G+ A A+ GT + I +F L+++ VT + P L+ L+
Sbjct: 210 GFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL 269
Query: 304 XXXXXVHLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXX 361
H+ AGA P AVL + G KV+ YG TE ++ + R
Sbjct: 270 KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEA----MNSLYMRQ------- 317
Query: 362 XXXXXXXRQGVKTTA--LTEVDVLDPKSGVSAKRDGSTLGE-IVLRGGCIMLGYLKDPIG 418
+ G + +EV ++ GV GE IV +GYL P
Sbjct: 318 ------PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEA 371
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T + + DGW+ T DV V +G + I R D+II P V E
Sbjct: 372 TAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV 430
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKT 537
V+ D+ WG++ A V + G + + +CR L + PK +D+LPK
Sbjct: 431 VVIGLADQRWGQSVTACVVPRLGETL--SADALDTFCRSSELADFKRPKRYFILDQLPKN 488
Query: 538 STGKIQK 544
+ K+ +
Sbjct: 489 ALNKVLR 495
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 143/367 (38%), Gaps = 30/367 (8%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244
R P + YTSGTT PK + R ++ ++T V L +P++H
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209
Query: 245 GW-CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXX 303
G+ A A+ GT + + +F L+++ VT + P L+ L+
Sbjct: 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL 269
Query: 304 XXXXXVHLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXX 361
H+ AGA P AVL + G KV+ YG TE ++ + R
Sbjct: 270 KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEA----MNSLYMRQ------- 317
Query: 362 XXXXXXXRQGVKTTA--LTEVDVLDPKSGVSAKRDGSTLGE-IVLRGGCIMLGYLKDPIG 418
+ G + +EV ++ GV GE IV +GYL P
Sbjct: 318 ------PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T + + DGW+ T DV V +G + I R D+II P V E
Sbjct: 372 TAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV 430
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKT 537
V+ D+ WG++ A V + G + + +CR L + PK +D+LPK
Sbjct: 431 VVIGLADQRWGQSVTACVVPRLGETL--SADALDTFCRSSELADFKRPKRYFILDQLPKN 488
Query: 538 STGKIQK 544
+ K+ +
Sbjct: 489 ALNKVLR 495
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 143/367 (38%), Gaps = 30/367 (8%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244
R P + YTSGTT PK + R ++ ++T V L +P++H
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209
Query: 245 GW-CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXX 303
G+ A A+ GT + + +F L+++ VT + P L+ L+
Sbjct: 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL 269
Query: 304 XXXXXVHLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXX 361
H+ AGA P AVL + G KV+ YG TE ++ + R
Sbjct: 270 KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEA----MNSLYMRQ------- 317
Query: 362 XXXXXXXRQGVKTTA--LTEVDVLDPKSGVSAKRDGSTLGE-IVLRGGCIMLGYLKDPIG 418
+ G + +EV ++ GV GE IV +GYL P
Sbjct: 318 ------PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T + + DGW+ T DV V +G + I R D+II P V E
Sbjct: 372 TAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEV 430
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKT 537
V+ D+ WG++ A V + G + + +CR L + PK +D+LPK
Sbjct: 431 VVIGLADQRWGQSVTACVVPRLGETL--SADALDTFCRSSELADFKRPKRYFILDQLPKN 488
Query: 538 STGKIQK 544
+ K+ +
Sbjct: 489 ALNKVLR 495
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 127/305 (41%), Gaps = 50/305 (16%)
Query: 264 KFDASIIFDLIRRHGVTHMCGAPVVLNML-----SNYRXXXXXXXXXXXXVHLVTAGAPP 318
+F+A + + ++GVT C P + L S+Y + V AG P
Sbjct: 302 RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLK--------YAVVAGEPL 353
Query: 319 PAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXXXXXXXRQGV--KTT 375
V R E G K+ G+G TET + + W + G K T
Sbjct: 354 NPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWME--------------PKPGSIGKPT 399
Query: 376 ALTEVDVLDPKSGVSAKRDG-----STLGEIVL-----RGGCIMLGYLKDPIGTRKCMTD 425
+++++D RDG GEIV+ + + + Y KDP T + D
Sbjct: 400 PGYKIELMD--------RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD 451
Query: 426 DGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPD 485
G+++TGD+ M DGYL R+ D+I PAV E A+ PD
Sbjct: 452 -GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPD 510
Query: 486 EFWGETPCAFVSL-KEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
G+ A + L K+ + S + E+ ++ + Y P+ + F+ ELPKT +GKI++
Sbjct: 511 PVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRR 570
Query: 545 FVLRE 549
+R+
Sbjct: 571 VEIRD 575
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 129/562 (22%), Positives = 206/562 (36%), Gaps = 54/562 (9%)
Query: 20 LERAATVYGDSPSIIYN--------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
L+R GD +II+ +I+Y + H + A++LL +GI +G VV++
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 72 PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSL 131
P VP A AV + I V+ + S+LV + VR S+
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT---ADEGVRAGRSI 196
Query: 132 -----FPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIRP 186
LK P + + D + + L+ K PE +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW---WRDLIEKASPEHQPEAM 253
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTLPMFHSN 244
E DP+ + YTSG+T PKGV+H G ++V T + P +Y T +
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 245 GWCFP-WAMAAVGGTNICIRKF----DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXX 299
G + + A G T + + + ++ +H V + AP + L
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 300 XXXXXXXXXVHLVTAGAP-PPAAVLLRTESLGFK---VSHGYGLTETGGIVVSCAWKRNW 355
L +AG P P A + +G + V + TETGG +++
Sbjct: 372 IEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT------- 424
Query: 356 NXXXXXXXXXXXXRQGVKTTALTEVD-VLDPKSGVSAKRDGSTLGEIVLR----GGCIML 410
+ G T V L G ++G+T G +V+ G L
Sbjct: 425 -----PLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQARTL 477
Query: 411 GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXX 470
+ T +++GD DGY I R DV+
Sbjct: 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 471 XXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVV 529
P + EAAVV P G+ A+V+L G + P E+ + R + P +
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLH 597
Query: 530 FMDELPKTSTGKIQKFVLREIA 551
+ D LPKT +GKI + +LR+IA
Sbjct: 598 WTDSLPKTRSGKIMRRILRKIA 619
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 138/365 (37%), Gaps = 30/365 (8%)
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244
R P + YTSGTT PK + R ++ +T V L P++H
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVV 209
Query: 245 GW-CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXX 303
G+ A A+ GT + + +F L+++ VT + P L+ L+
Sbjct: 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL 269
Query: 304 XXXXXVHLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXX 361
H+ AGA P AVL + G KV+ YG TE + + R
Sbjct: 270 KLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI-YGTTEA----XNSLYXRQ------- 317
Query: 362 XXXXXXXRQGVKTTA--LTEVDVLDPKSGVSAKRDGSTLGE-IVLRGGCIMLGYLKDPIG 418
+ G + +EV ++ GV GE IV +GYL P
Sbjct: 318 ------PKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T + + DGW+ T DV V +G + I R D II P V E
Sbjct: 372 TAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEV 430
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKT 537
V+ D+ WG++ A V + G + + +CR L + PK +D+LPK
Sbjct: 431 VVIGLADQRWGQSVTACVVPRLGETL--SADALDTFCRSSELADFKRPKRYFILDQLPKN 488
Query: 538 STGKI 542
+ K+
Sbjct: 489 ALNKV 493
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 109/276 (39%), Gaps = 27/276 (9%)
Query: 22 RAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELH 81
R A ++ D + + + + T D R +LAS LL G+ G V+++S N + EL
Sbjct: 14 RNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73
Query: 82 FAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPL 141
AV A+L +N RL+A ++ +L +V R +V + P L
Sbjct: 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL---------PSL 124
Query: 142 VLIXXXXXXXXXXXXHHP--NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTS 199
+ P +++ D FS PEF D V+ +T+
Sbjct: 125 GGVKKAYAIGDGSGPFAPFKDLASDTPFSA---------PEF------GAADGFVIIHTA 169
Query: 200 GTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTN 259
P+G + + I + + W + V L LP+FH G + GG +
Sbjct: 170 AVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGAS 229
Query: 260 ICIRKFDASIIFDLIRRHGVTHMCG-APVVLNMLSN 294
+ KFD + I H VT M AP++ N+L
Sbjct: 230 VIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ 265
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 5/153 (3%)
Query: 398 LGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS--KDVIIX 455
+GEIVLRG + GY + T+ + GW +TGD+G +DGYL R+ K++I
Sbjct: 347 VGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDMGRFDADGYLFYAGRAPEKELIKT 405
Query: 456 XXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYC 515
PA+ +A V+ PD W E A K G + E+
Sbjct: 406 GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI--AADALAEFV 463
Query: 516 RGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548
+ Y PK VVF++ LPK + G I + ++
Sbjct: 464 ASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 128/570 (22%), Positives = 208/570 (36%), Gaps = 67/570 (11%)
Query: 1 MEQLKPSPANSTPLTPLVF-----LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASS 55
+E+ PA + P +F L R + I + + T+ + R + AS+
Sbjct: 5 LEKAANPPAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASA 64
Query: 56 LLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115
L ++G+ + +V + AL +A V NT L +L H ++ V
Sbjct: 65 LRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124
Query: 116 FVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVA 175
S ALV+ +++ P S+ + +E L+
Sbjct: 125 IA---SGALVQNVTQALESAEHDGCQLIVS------------QPRESEPRLAPLFEELI- 168
Query: 176 KGDPEFEWIRPRTEWDPIVL-NYTSGTTMSPKGVVHCHRGIFIVA-VNTLSDWSVPTQPV 233
T D I Y+SG+T PKG VH H ++ A + + V
Sbjct: 169 -DAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDV 227
Query: 234 YLWTLPMFHS----NGWCFPWAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVV 288
+F + NG FP + VG T I + + A IF + H T G P
Sbjct: 228 VFSAAKLFFAYGLGNGLTFPLS---VGATAILMAERPTADAIFARLVEHRPTVFYGVP-- 282
Query: 289 LNMLSNYRXXXXXXXXXXXXVHLVT-AGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIV 346
+ +N + + T AG P + R T G ++ G G TE I
Sbjct: 283 -TLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIF 341
Query: 347 VSCAWKRNWNXXXXXXXXXXXXRQGVKTTALT-------EVDVLDPKSGVSAKRDGSTLG 399
+S R G T E+++ D A DG +G
Sbjct: 342 LS-------------------NRAGAVEYGTTGRPVPGYEIELRDEAG--HAVPDGE-VG 379
Query: 400 EIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXX 459
++ ++G + Y + +R + W +GD +G RS D++
Sbjct: 380 DLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQY 438
Query: 460 XXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL 519
AV EAAVV +T V +E + S+ +E+ + + RL
Sbjct: 439 VSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRL 498
Query: 520 PHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
+ P+ +VF+D+LPKT+TGKIQ+F LRE
Sbjct: 499 APHKYPRDIVFVDDLPKTATGKIQRFKLRE 528
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 142/370 (38%), Gaps = 32/370 (8%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250
D + +TSG+T PKGV+ HR + + P + V+L P+ + +
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDE-VFLQCSPV-SWDAFGLEL 272
Query: 251 AMAAVGGTNICIRKF---DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXXXX 307
A + G ++ D I +L+ RHGVT + + + N L +
Sbjct: 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVD-----EVPEAFEG 327
Query: 308 XVHLVTAGAPP--PAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXXXX 365
+ +T G P P R + ++ +GYG E+ G A
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVV--AGDLSGTALPI 385
Query: 366 XXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD 425
G + L D L P + LGE+ + G + GY+ P T +
Sbjct: 386 GVPLAGKRAYVLD--DDLKPAAN-------GALGELYVAGAGLAHGYVSRPALTAERFVA 436
Query: 426 DGW--------FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNE 477
D + + TGD+ +DG LE R+ D + PAV +
Sbjct: 437 DPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQ 496
Query: 478 AAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKT 537
AAV+A+ + A+V + E + + P E+ + LP YMVP V +DELP+T
Sbjct: 497 AAVLAQDSRLGDKQLVAYV-VAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRT 555
Query: 538 STGKIQKFVL 547
GK+ + L
Sbjct: 556 PNGKLDRRAL 565
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 114/531 (21%), Positives = 188/531 (35%), Gaps = 49/531 (9%)
Query: 30 SPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89
S +II ++ + LA+ L G+ +G V PNV Y + FA+ A
Sbjct: 46 SLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105
Query: 90 VLNTINTRLDARTVSL--LLQHCQSKLVFVDFHSRALVREAV--SLFPPDLKPPPLVLIX 145
V+ +N R L ++ Q KL+ SL +L P ++++
Sbjct: 106 VV--LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN 163
Query: 146 XXXXXXXXXX-XHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMS 204
P + F ST VA + G+T +
Sbjct: 164 HQATDFGLLDWIETPAETFVDFSSTPADEVA------------------FFQLSGGSTGT 205
Query: 205 PKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAV--GGTNICI 262
PK + H + + + L LP H+ P A+ + GG +
Sbjct: 206 PKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265
Query: 263 RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXXXXXXXXXVHLVTAGAPPPAAV 322
+ F +I+RH V P + M + + L+ G
Sbjct: 266 PNPEPLNCFSIIQRHQVNMASLVPSAVIM---WLEKAAQYKDQIQSLKLLQVGGASFPES 322
Query: 323 LLRT--ESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXXXXXXXXXXRQGVKTTALTEV 380
L R E L K+ +G+ E G+V N+ QG ++ E+
Sbjct: 323 LARQVPEVLNCKLQQVFGMAE--GLV-------NYTRLDDSDEQIFTT-QGRPISSDDEI 372
Query: 381 DVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD 440
++D + + + +G + RG GY + P + +D ++Y+GD+ D
Sbjct: 373 KIVDEQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPD 429
Query: 441 GYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAF-VSLK 499
G L + R KD I P V AA+VA DE +GE CAF VS
Sbjct: 430 GNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN 489
Query: 500 EGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
K+ + ++E + Y +P + ++ LP T+ GK+ K LR I
Sbjct: 490 PELKAVVLRRHLMELG---IAQYKLPDQIKLIESLPLTAVGKVDKKQLRSI 537
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 115/560 (20%), Positives = 200/560 (35%), Gaps = 82/560 (14%)
Query: 8 PANSTPLTPLVF-LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHV 66
PA + PL + + A D+P++ Y+ T ++ + ++A L G +G V
Sbjct: 457 PAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSV 516
Query: 67 VSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVR 126
V++ + L V A A ++ +L +S +L + + +
Sbjct: 517 VALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA 576
Query: 127 E----AVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKG-DPEF 181
E +LF I D F S A DP
Sbjct: 577 ELPYTGTTLF----------------------------IDDQTRFEEQASDPATAIDPN- 607
Query: 182 EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMF 241
DP + YTSGTT PKG + H I + V + + Q +L ++ +
Sbjct: 608 ---------DPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFL-SVSNY 656
Query: 242 HSNGWCFPWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRX 297
+ + F + + + + I D + DLI + V M + N+L++
Sbjct: 657 AFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTD--- 713
Query: 298 XXXXXXXXXXXVHLVTAGAP----PPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKR 353
+ + G P LR G K+ + YG TE G V + A
Sbjct: 714 ---AGEDWMKGLRCILFGGERASVPHVRKALRIMGPG-KLINCYGPTE--GTVFATAHVV 767
Query: 354 NWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413
+ L E L P V GE+ + G + GY+
Sbjct: 768 HDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV---------GELCISGMGVSKGYV 818
Query: 414 KDPIGTRKCMTDDGW------FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXX 467
T++ ++ + + TGD+ DG +E R D +
Sbjct: 819 NRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEK 878
Query: 468 XXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKT 527
P V +A VVA E + A++ ++++ + +++ + + +LP YMVP+T
Sbjct: 879 QLQEYPGVKDAVVVADRHESGDASINAYLV----NRTQLSAEDVKAHLKKQLPAYMVPQT 934
Query: 528 VVFMDELPKTSTGKIQKFVL 547
F+DELP T+ GK+ K +L
Sbjct: 935 FTFLDELPLTTNGKVNKRLL 954
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Query: 429 FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFW 488
+++GD DGY I R DV+ P + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 489 GETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547
G+ A+V+L G + P E+ + R + P + + D LPKT +GKI + +L
Sbjct: 556 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
Query: 548 REIA 551
R+IA
Sbjct: 616 RKIA 619
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 22/217 (10%)
Query: 20 LERAATVYGDSPSIIYN--------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
L+R GD +II+ +I+Y + H + A++LL +GI +G VV++
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 72 PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSL 131
P VP A AV + I V+ + S+LV + VR S+
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT---ADEGVRAGASI 196
Query: 132 -----FPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIRP 186
LK P + + D + + L+ K PE +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW---WRDLIEKASPEHQPEAM 253
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL 223
E DP+ + YTSG+T PKGV+H G + A T
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF 289
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Query: 429 FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFW 488
+++GD DGY I R DV+ P + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 489 GETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547
G+ A+V+L G + P E+ + R + P + + D LPKT +GKI + +L
Sbjct: 556 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
Query: 548 REIA 551
R+IA
Sbjct: 616 RKIA 619
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 22/217 (10%)
Query: 20 LERAATVYGDSPSIIYN--------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
L+R GD +II+ +I+Y + H + A++LL +GI +G VV++
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 72 PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSL 131
P VP A AV + I V+ + S+LV + VR S+
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT---ADEGVRAGRSI 196
Query: 132 -----FPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIRP 186
LK P + + D + + L+ K PE +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW---WRDLIEKASPEHQPEAM 253
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL 223
E DP+ + YTSG+T PKGV+H G + A T
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF 289
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Query: 429 FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFW 488
+++GD DGY I R DV+ P + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 489 GETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547
G+ A+V+L G + P E+ + R + P + + D LPKT +GKI + +L
Sbjct: 556 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
Query: 548 REIA 551
R+IA
Sbjct: 616 RKIA 619
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 22/217 (10%)
Query: 20 LERAATVYGDSPSIIYN--------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
L+R GD +II+ +I+Y + H + A++LL +GI +G VV++
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 72 PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSL 131
P VP A AV + I V+ + S+LV + VR S+
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVIT---ADEGVRAGRSI 196
Query: 132 -----FPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIRP 186
LK P + + D + + L+ K PE +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW---WRDLIEKASPEHQPEAM 253
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL 223
E DP+ + YTSG+T PKGV+H G + A T
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF 289
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 429 FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFW 488
+++GD DGY I R DV+ P + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 489 GETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547
G+ A+V+L G + P E+ + R + P + + D LPKT +G I + +L
Sbjct: 556 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRIL 615
Query: 548 REIA 551
R+IA
Sbjct: 616 RKIA 619
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 22/217 (10%)
Query: 20 LERAATVYGDSPSIIYN--------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
L+R GD +II+ +I+Y + H + A++LL +GI +G VV++
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 72 PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSL 131
P VP A AV + I V+ + S+LV + VR S+
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT---ADEGVRAGRSI 196
Query: 132 -----FPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIRP 186
LK P + + D + + L+ K PE +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW---WRDLIEKASPEHQPEAM 253
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL 223
E DP+ + YTSG+T PKGV+H G + A T
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF 289
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 429 FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFW 488
+++GD DGY I R DV+ P + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 489 GETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547
G+ A+V+L G + P E+ + + P + + D LPKT +GKI + +L
Sbjct: 556 GQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
Query: 548 REIA 551
R+IA
Sbjct: 616 RKIA 619
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 22/217 (10%)
Query: 20 LERAATVYGDSPSIIYN--------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
L+R GD +II+ +I+Y + H + A++LL +GI +G VV++
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 72 PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSL 131
P VP A AV + I V+ + S+LV + VR S+
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT---ADEGVRAGRSI 196
Query: 132 -----FPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIRP 186
LK P + + D + + L+ K PE +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW---WRDLIEKASPEHQPEAM 253
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL 223
E DP+ + YTSG+T PKGV+H G + A T
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF 289
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 429 FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFW 488
+++GD DGY I R DV+ P + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 489 GETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547
G+ A+V+L G + P E+ + + P + + D LPKT +GKI + +L
Sbjct: 556 GQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
Query: 548 REIA 551
R+IA
Sbjct: 616 RKIA 619
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 22/217 (10%)
Query: 20 LERAATVYGDSPSIIYN--------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
L+R GD +II+ +I+Y + H + A++LL +GI +G VV++
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 72 PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSL 131
P VP A AV + I V+ + S+LV + VR S+
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT---ADEGVRAGRSI 196
Query: 132 -----FPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDPEFEWIRP 186
LK P + + D + + L+ K PE +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW---WRDLIEKASPEHQPEAM 253
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL 223
E DP+ + YTSG+T PKGV+H G + A T
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF 289
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 141/376 (37%), Gaps = 40/376 (10%)
Query: 186 PRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245
P D + YTSGTT +PKG + H+GI + V + +V T+ + +
Sbjct: 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNV-TEKDRIGQFASISFDA 236
Query: 246 WCFPWAMAAVGGTNICIRKFDASIIF----DLIRRHGVTHMCGAPVVLNMLSNYRXXXXX 301
+ MA + G ++ I D F I + +T + P + L R
Sbjct: 237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQ 296
Query: 302 XXXXXXXVHLVTAG-APPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXXX 360
L+TAG A P+ V E + + + YG TET CA W
Sbjct: 297 T--------LITAGSATSPSLVNKWKEKVTY--INAYGPTET----TICA--TTWVATKE 340
Query: 361 XXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
++ T + VD + K G GE+ + G + GY K P T
Sbjct: 341 TIGHSVPIGAPIQNTQIYIVD-----ENLQLKSVGEA-GELCIGGEGLARGYWKRPELTS 394
Query: 421 KCMTDDGW------FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPA 474
+ D+ + + TGD SDG +E R + +
Sbjct: 395 QKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMY 454
Query: 475 VNEAAVVARPDEFWGETPCA-FVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDE 533
++E AV D CA FVS K P E ++ ++ LP YM+P + +D+
Sbjct: 455 ISETAVSVHKDHQEQPYLCAYFVS----EKHIPLE-QLRQFSSEELPTYMIPSYFIQLDK 509
Query: 534 LPKTSTGKIQKFVLRE 549
+P TS GKI + L E
Sbjct: 510 MPLTSNGKIDRKQLPE 525
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 393 RDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCM-TDDGW--FYTGDVGVMHSDGYLE 444
DG L GEI++ G + GYL +P T + T G ++TGD+G + D L
Sbjct: 338 EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILL 397
Query: 445 IKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPD-EFWGETPCAFVSLKEGSK 503
R I P V A V R + E + A++ +K+G K
Sbjct: 398 YGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVK 457
Query: 504 SK-PTEKEMIEYCRGRLPH----YMVPKTVVFMDELPKTSTGKIQ-KFVLREIAENMG 555
+ E E+ + + + YM+P ++ D LP T GKI K ++ E+ G
Sbjct: 458 ERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSD--WSVPTQPVYLWTLPMFHSNGWCFPWA-MA 253
+TSGTT PKGV H + + D + VP QP L P + + WA
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQ-PPYSFDLSVMYWAPTL 210
Query: 254 AVGGTNICIRK 264
A+GGT + K
Sbjct: 211 ALGGTLFALPK 221
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 131/383 (34%), Gaps = 42/383 (10%)
Query: 185 RPRTEWDPIV-LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHS 243
RP D I +N++SGTT PK + H GI + + S + Q +L P+
Sbjct: 158 RPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQ-SFLAFAPQMRFLVNSPLSFD 216
Query: 244 NGWCFPWAMAAVGGTNIC--IRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXXXX 301
W GG + + D ++ LI G + N L +
Sbjct: 217 AATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLG 276
Query: 302 XXXXXXXVHLVTAG----APPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNX 357
L+T G P LLR L + +GYG TE +C +
Sbjct: 277 GLR-----QLLTGGDILSVPHVRRALLRHPRL--HLVNGYGPTEN--TTFTCCHVVTDDD 327
Query: 358 XXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417
K A T V +LD A+ D + GEIV G + GY D
Sbjct: 328 LEEDDIPIG------KAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRNDAA 379
Query: 418 GTRKCMTDDGW-------FYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXX 470
TR + + + TGD G L R +
Sbjct: 380 RTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR 439
Query: 471 XXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVF 530
P + + A++ R + CA+ K+ + + ++ +LP + P V
Sbjct: 440 RQPGILDCALLVRERNGVKQLLCAWTG-----KADASPQALLR----QLPTWQRPHACVR 490
Query: 531 MDELPKTSTGKIQK-FVLREIAE 552
++ LP T+ GK+ + +LR + E
Sbjct: 491 VEALPLTAHGKLDRAALLRRLEE 513
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 385 PKSGVSAKRDGS------TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMH 438
P+ G+ + + +G I + G + GY D + ++ + GW TGD+G +
Sbjct: 391 PEHGIEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQV-SQDEIAATGWLDTGDLGYL- 448
Query: 439 SDGYLEIKDRSKDVII 454
DGYL + R KD+II
Sbjct: 449 LDGYLYVTGRIKDLII 464
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP---VYLWTLPMFHSNG 245
D L YTSG+T P+GV+ HR + + +S + +P W LP +H G
Sbjct: 176 DIAYLQYTSGSTRFPRGVIITHREV-XANLRAISHDGIKLRPGDRCVSW-LPFYHDXG 231
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 392 KRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMT---DDGWFYTGDVGVMHSDGYL 443
K DG+ GEIV+ G + +GYL P T K T + + TGD G + +G L
Sbjct: 334 KEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLL 392
Query: 444 EIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVA--RPDEFWGE-----TPCAFV 496
R D I + E AV+ + E + P
Sbjct: 393 FYNGRL-DFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS 451
Query: 497 SLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI-QKFVLREI 550
KE + +KE+ E RLP+YM+P+ ++ +P T GK+ +K +L E+
Sbjct: 452 FEKEFKLTSAIKKELNE----RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEV 502
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 392 KRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMT---DDGWFYTGDVGVMHSDGYL 443
K DG+ GEIV+ G + +GYL P T K T + + TGD G + +G L
Sbjct: 334 KEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLL 392
Query: 444 EIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVA--RPDEFWGE-----TPCAFV 496
R D I + E AV+ + E + P
Sbjct: 393 FYNGRL-DFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS 451
Query: 497 SLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI-QKFVLREI 550
KE + +KE+ E RLP+YM+P+ ++ +P T GK+ +K +L E+
Sbjct: 452 FEKEFKLTSAIKKELNE----RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEV 502
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 80/383 (20%), Positives = 128/383 (33%), Gaps = 46/383 (12%)
Query: 182 EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPV-----YLW 236
+W++ E + + YTSG+T +PKGV I + + +DW PV +L
Sbjct: 138 QWVK---EHETFYIIYTSGSTGNPKGV-----QISAANLQSFTDWICADFPVSGGKIFLN 189
Query: 237 TLPMFHSNGWCFPWAMAAVGGTNICIRKFDA----SIIFDLIRRHGVTHMCGAPVVLNML 292
P + GGT C+ K DA ++F+ +++ G+ P + M
Sbjct: 190 QAPFSFDLSVMDLYPCLQSGGTLHCVTK-DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248
Query: 293 SNYRXXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWK 352
P A L K+ + YG TE V S
Sbjct: 249 LMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEIT 308
Query: 353 RNWNXXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVS-AKRDGSTLGE-----IVLRGG 406
+ + + V P + +G L E IV+ G
Sbjct: 309 NDV----------------ISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP 352
Query: 407 CIMLGYLKDPIGTRKCM--TDDGWFY-TGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXX 463
+ GYL +P T K + W Y TGD G + DG + + R I
Sbjct: 353 SVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELE 411
Query: 464 XXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE--KEMIEYCRGRLPH 521
V A V+ E A + +E K + + + LP
Sbjct: 412 EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPA 471
Query: 522 YMVPKTVVFMDELPKTSTGKIQK 544
YM+P+ ++ D + T+ GKI +
Sbjct: 472 YMIPRKFIYQDHIQMTANGKIDR 494
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 493 CAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
CA+V+ +EGS + T +E+ + + LP YM P + + LP+T GK+ +
Sbjct: 482 CAYVA-REGSAT--TARELRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|3F0L|A Chain A, Crystal Structure Of Oxidized D105n Synechocystis Sp. Pcya
pdb|3F0M|A Chain A, Crystal Structure Of Radical D105n Synechocystis Sp. Pcya
Length = 248
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 159 PNISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYT-----SGTTMSPKGV---- 208
P SD Q + Y+ SL G PEFE R W I Y S T + V
Sbjct: 122 PTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWGEIFSEYCLFIRPSNVTEEERFVQRVV 181
Query: 209 ----VHCHRGI 215
+HCH+ I
Sbjct: 182 DFLQIHCHQSI 192
>pdb|4EOE|A Chain A, Crystal Structure Of H74a Synechocystis Sp. Pcya
Length = 248
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 159 PNISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYT-----SGTTMSPKGV---- 208
P SD Q + Y+ SL G PEFE R W I Y S T + V
Sbjct: 122 PTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWGEIFSEYCLFIRPSNVTEEERFVQRVV 181
Query: 209 ----VHCHRGI 215
+HCH+ I
Sbjct: 182 DFLQIHCHQSI 192
>pdb|3I95|A Chain A, Crystal Structure Of E76q Mutant Pcya-Biliverdin Complex
Length = 248
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 159 PNISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYT-----SGTTMSPKGV---- 208
P SD Q + Y+ SL G PEFE R W I Y S T + V
Sbjct: 122 PTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWGEIFSEYCLFIRPSNVTEEERFVQRVV 181
Query: 209 ----VHCHRGI 215
+HCH+ I
Sbjct: 182 DFLQIHCHQSI 192
>pdb|2D1E|A Chain A, Crystal Structure Of Pcya-Biliverdin Complex
pdb|2DKE|A Chain A, Crystal Structure Of Substrate-Free Form Of Pcya
pdb|3I8U|X Chain X, Crystal Structure Of Pcya-181,182-Dihydrobiliverdin
Complex
pdb|3I94|A Chain A, Crystal Structure Of Pcya-Biliverdin Xiii Alpha Complex
Length = 248
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 159 PNISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYT-----SGTTMSPKGV---- 208
P SD Q + Y+ SL G PEFE R W I Y S T + V
Sbjct: 122 PTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWGEIFSEYCLFIRPSNVTEEERFVQRVV 181
Query: 209 ----VHCHRGI 215
+HCH+ I
Sbjct: 182 DFLQIHCHQSI 192
>pdb|3NB8|A Chain A, Crystal Structure Of Oxidized H88q Synechocystis Sp. Pcya
pdb|3NB9|A Chain A, Crystal Structure Of Radical H88q Synechocystis Sp. Pcya
Length = 248
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 159 PNISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYT-----SGTTMSPKGV---- 208
P SD Q + Y+ SL G PEFE R W I Y S T + V
Sbjct: 122 PTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWGEIFSEYCLFIRPSNVTEEERFVQRVV 181
Query: 209 ----VHCHRGI 215
+HCH+ I
Sbjct: 182 DFLQIHCHQSI 192
>pdb|4EOD|A Chain A, Crystal Structure Of H74e Synechocystis Sp. Pcya Sp. Pcya
Length = 248
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 159 PNISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYT-----SGTTMSPKGV---- 208
P SD Q + Y+ SL G PEFE R W I Y S T + V
Sbjct: 122 PTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWGEIFSEYCLFIRPSNVTEEERFVQRVV 181
Query: 209 ----VHCHRGI 215
+HCH+ I
Sbjct: 182 DFLQIHCHQSI 192
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 195 LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV-------PTQPVYLWTLPMFHSNGWC 247
L YTSG+T +P GVV H+ + + +S + P + W LP +H G
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW-LPFYHDMGLV 246
Query: 248 FPWAMAAVGG 257
+GG
Sbjct: 247 IGICAPILGG 256
>pdb|3AJG|A Chain A, Crystal Structure Of Pcya V225d-Biliverdin Ix Alpha
Complex
pdb|3AJG|B Chain B, Crystal Structure Of Pcya V225d-Biliverdin Ix Alpha
Complex
pdb|3AJH|A Chain A, Crystal Structure Of Pcya V225d-Biliverdin Xiii Alpha
Complex
pdb|3AJH|B Chain B, Crystal Structure Of Pcya V225d-Biliverdin Xiii Alpha
Complex
Length = 248
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 159 PNISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYT-----SGTTMSPKGV---- 208
P SD Q + Y+ SL G PEFE R W I Y S T + V
Sbjct: 122 PTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWGEIFSEYCLFIRPSNVTEEERFVQRVV 181
Query: 209 ----VHCHRGI 215
+HCH+ I
Sbjct: 182 DFLQIHCHQSI 192
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 195 LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV-------PTQPVYLWTLPMFHSNGWC 247
L YTSG+T +P GVV H+ + + S + P + W LP +H G
Sbjct: 188 LQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSW-LPFYHDXGLV 246
Query: 248 FPWAMAAVGG 257
+GG
Sbjct: 247 IGICAPILGG 256
>pdb|1WMY|A Chain A, Crystal Structure Of C-Type Lectin Cel-I From Cucumaria
Echinata
pdb|1WMY|B Chain B, Crystal Structure Of C-Type Lectin Cel-I From Cucumaria
Echinata
pdb|1WMZ|A Chain A, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|B Chain B, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|C Chain C, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|D Chain D, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
Length = 140
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 28 GDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
GD +N +T TW + HH C+ + S L++ R +VSV S
Sbjct: 11 GDHCYRFFNTLT-TWENAHHECVSYSCSTLNV---RSDLVSVHS 50
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245
D L YTSG+T PKGV H + + + + + LP H G
Sbjct: 168 DIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXG 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,805,002
Number of Sequences: 62578
Number of extensions: 606426
Number of successful extensions: 1322
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 123
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)