Query 044926
Match_columns 569
No_of_seqs 186 out of 2247
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:08:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 9.7E-82 3.3E-86 662.4 49.5 514 8-557 13-546 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 3.3E-81 1.1E-85 656.4 50.3 506 13-553 21-535 (536)
3 1v25_A Long-chain-fatty-acid-C 100.0 4.4E-81 1.5E-85 655.7 46.9 517 9-554 13-537 (541)
4 1mdb_A 2,3-dihydroxybenzoate-A 100.0 9.9E-80 3.4E-84 645.2 50.9 503 11-555 22-533 (539)
5 4fuq_A Malonyl COA synthetase; 100.0 7.5E-80 2.6E-84 640.5 47.4 493 18-554 4-501 (503)
6 3r44_A Fatty acyl COA syntheta 100.0 1.3E-79 4.4E-84 641.0 49.3 502 10-555 12-515 (517)
7 3o83_A Peptide arylation enzym 100.0 2.2E-80 7.6E-85 650.8 40.6 509 10-556 26-543 (544)
8 2d1s_A Luciferase, luciferin 4 100.0 2.2E-78 7.4E-83 635.9 51.4 506 14-555 25-545 (548)
9 3rix_A Luciferase, luciferin 4 100.0 5.4E-80 1.8E-84 649.2 39.3 513 8-555 14-543 (550)
10 3ivr_A Putative long-chain-fat 100.0 9E-80 3.1E-84 642.1 39.5 500 9-556 1-504 (509)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 7.2E-78 2.5E-82 626.6 52.2 485 14-552 2-503 (504)
12 3fce_A D-alanine--poly(phospho 100.0 8.6E-78 2.9E-82 627.7 49.3 499 14-559 1-510 (512)
13 3e7w_A D-alanine--poly(phospho 100.0 4.6E-77 1.6E-81 621.6 52.3 496 14-557 1-507 (511)
14 3etc_A AMP-binding protein; ad 100.0 3.5E-77 1.2E-81 629.4 50.7 505 13-553 54-579 (580)
15 3rg2_A Enterobactin synthase c 100.0 1.5E-76 5.1E-81 630.8 52.5 505 10-555 23-536 (617)
16 1pg4_A Acetyl-COA synthetase; 100.0 1.5E-76 5E-81 633.4 49.9 516 15-554 77-622 (652)
17 3c5e_A Acyl-coenzyme A synthet 100.0 4.9E-76 1.7E-80 620.0 52.3 501 15-555 39-564 (570)
18 3ipl_A 2-succinylbenzoate--COA 100.0 4.3E-77 1.5E-81 621.0 42.8 497 14-553 1-497 (501)
19 1amu_A GRSA, gramicidin synthe 100.0 8.7E-77 3E-81 624.7 43.8 481 13-551 38-527 (563)
20 3l8c_A D-alanine--poly(phospho 100.0 3E-76 1E-80 617.7 47.4 499 12-557 2-516 (521)
21 1ry2_A Acetyl-coenzyme A synth 100.0 4.4E-76 1.5E-80 629.7 47.7 518 14-554 82-638 (663)
22 2v7b_A Benzoate-coenzyme A lig 100.0 1.5E-75 5.1E-80 613.2 48.3 498 15-549 25-528 (529)
23 4gr5_A Non-ribosomal peptide s 100.0 2.6E-77 8.9E-82 631.1 34.2 484 12-550 73-568 (570)
24 4dg8_A PA1221; ANL superfamily 100.0 1.6E-75 5.3E-80 620.0 42.1 481 11-555 24-515 (620)
25 3tsy_A Fusion protein 4-coumar 100.0 4.5E-76 1.5E-80 659.1 37.8 517 13-558 60-587 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 7.4E-75 2.5E-79 602.9 30.8 479 12-549 20-504 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 9E-74 3.1E-78 608.8 33.3 520 10-564 7-578 (590)
28 3ite_A SIDN siderophore synthe 100.0 3.1E-73 1.1E-77 600.1 34.4 499 7-556 13-546 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 7.1E-71 2.4E-75 585.3 42.3 513 11-564 18-574 (576)
30 2vsq_A Surfactin synthetase su 100.0 4.8E-71 1.6E-75 633.3 43.1 495 4-552 454-959 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.4E-58 4.8E-63 479.8 29.9 405 7-448 17-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.4E-53 1.2E-57 419.0 22.5 316 189-554 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.6E-48 1.2E-52 395.7 25.5 326 187-545 82-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.1E-47 3.8E-52 392.8 25.9 334 187-548 89-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.4E-47 4.8E-52 391.4 23.5 331 187-546 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.2E-29 7.5E-34 250.8 19.5 236 187-458 88-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.5 1.8E-14 6.2E-19 114.7 6.5 97 447-545 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 6E-14 2.1E-18 112.0 7.2 97 447-544 1-101 (109)
39 4eql_A 4-substituted benzoates 98.8 4.3E-08 1.5E-12 100.0 13.0 71 396-483 384-466 (581)
40 4b2g_A GH3-1 auxin conjugating 98.8 7.1E-08 2.4E-12 98.5 13.9 85 397-499 397-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.7 3E-07 1E-11 93.6 15.8 86 396-499 391-488 (581)
42 2y27_A Phenylacetate-coenzyme 92.3 1.6 5.6E-05 43.2 13.4 91 38-129 108-200 (437)
43 3qov_A Phenylacetate-coenzyme 92.1 1.6 5.5E-05 43.2 13.1 92 38-130 104-197 (436)
44 2y4o_A Phenylacetate-coenzyme 92.0 1.8 6.1E-05 43.0 13.3 91 38-129 110-202 (443)
45 3ipl_A 2-succinylbenzoate--COA 80.4 21 0.00071 35.8 13.5 99 27-129 161-269 (501)
46 1mdb_A 2,3-dihydroxybenzoate-A 80.0 31 0.001 35.0 14.7 99 27-129 180-290 (539)
47 3hgu_A EHPF; phenazine, antibi 75.3 8.6 0.00029 36.8 8.5 86 38-125 109-219 (369)
48 3rix_A Luciferase, luciferin 4 75.2 9.8 0.00033 38.9 9.3 97 191-292 36-136 (550)
49 3o83_A Peptide arylation enzym 73.3 22 0.00076 36.1 11.4 97 28-128 190-298 (544)
50 3r44_A Fatty acyl COA syntheta 72.6 27 0.00093 35.1 11.8 85 38-127 188-274 (517)
51 2d1s_A Luciferase, luciferin 4 71.0 20 0.00068 36.5 10.4 97 29-127 192-299 (548)
52 3g7s_A Long-chain-fatty-acid-- 70.7 25 0.00086 35.7 11.1 102 189-292 33-138 (549)
53 1v25_A Long-chain-fatty-acid-C 69.2 32 0.0011 34.8 11.5 85 207-292 45-133 (541)
54 3ni2_A 4-coumarate:COA ligase; 69.1 19 0.00064 36.5 9.7 96 188-291 35-134 (536)
55 3ivr_A Putative long-chain-fat 69.0 20 0.0007 36.0 9.9 93 189-291 20-116 (509)
56 3rg2_A Enterobactin synthase c 66.0 1.1E+02 0.0039 31.3 15.1 88 38-129 202-292 (617)
57 1t5h_X 4-chlorobenzoyl COA lig 65.6 41 0.0014 33.7 11.3 84 208-292 28-117 (504)
58 4gs5_A Acyl-COA synthetase (AM 64.6 21 0.00071 34.0 8.4 94 27-126 35-138 (358)
59 3fce_A D-alanine--poly(phospho 63.5 26 0.00089 35.2 9.4 85 38-125 162-249 (512)
60 3c5e_A Acyl-coenzyme A synthet 63.5 51 0.0017 33.6 11.7 100 188-292 56-160 (570)
61 3e7w_A D-alanine--poly(phospho 63.3 36 0.0012 34.2 10.4 86 38-126 161-249 (511)
62 3t5a_A Long-chain-fatty-acid-- 62.3 44 0.0015 33.0 10.8 106 188-295 37-149 (480)
63 1amu_A GRSA, gramicidin synthe 62.3 43 0.0015 34.1 10.8 84 208-292 63-150 (563)
64 4fuq_A Malonyl COA synthetase; 59.8 43 0.0015 33.5 10.2 78 209-287 28-109 (503)
65 2v7b_A Benzoate-coenzyme A lig 59.3 30 0.001 34.9 9.0 81 209-290 48-132 (529)
66 3kxw_A Saframycin MX1 syntheta 58.8 70 0.0024 32.6 11.9 99 27-128 165-277 (590)
67 3etc_A AMP-binding protein; ad 58.5 46 0.0016 34.1 10.3 94 188-286 69-166 (580)
68 1pg4_A Acetyl-COA synthetase; 57.6 63 0.0021 33.6 11.3 94 189-286 90-187 (652)
69 3tbh_A O-acetyl serine sulfhyd 55.0 69 0.0024 30.0 10.0 80 39-120 47-127 (334)
70 1ry2_A Acetyl-coenzyme A synth 53.6 92 0.0032 32.4 11.8 96 188-287 95-195 (663)
71 4gr5_A Non-ribosomal peptide s 52.9 64 0.0022 32.8 10.3 79 209-288 100-182 (570)
72 3ezx_A MMCP 1, monomethylamine 48.7 62 0.0021 28.0 8.0 90 232-325 93-194 (215)
73 2cvi_A 75AA long hypothetical 47.9 51 0.0017 23.2 6.2 48 462-521 15-62 (83)
74 3tsy_A Fusion protein 4-coumar 47.8 64 0.0022 35.6 9.9 94 188-289 74-171 (979)
75 3nyq_A Malonyl-COA ligase; A/B 46.4 91 0.0031 31.1 10.1 96 27-127 153-259 (505)
76 3vc3_A Beta-cyanoalnine syntha 39.3 1.1E+02 0.0039 28.6 8.8 81 38-120 61-142 (344)
77 4dg8_A PA1221; ANL superfamily 38.7 1.4E+02 0.0047 30.8 10.2 97 27-127 162-269 (620)
78 3l8c_A D-alanine--poly(phospho 38.3 74 0.0025 31.8 7.9 78 208-286 28-109 (521)
79 3gqw_A Fatty acid AMP ligase; 37.5 1.2E+02 0.004 30.7 9.4 85 207-292 47-142 (576)
80 2zbc_A 83AA long hypothetical 36.2 67 0.0023 22.4 5.3 47 462-520 15-61 (83)
81 4eez_A Alcohol dehydrogenase 1 35.4 1.1E+02 0.0038 28.5 8.2 78 39-119 136-216 (348)
82 3ite_A SIDN siderophore synthe 34.9 2E+02 0.0067 29.0 10.6 96 188-286 33-134 (562)
83 2djw_A Probable transcriptiona 32.0 75 0.0026 22.8 5.0 49 462-522 15-63 (92)
84 1z7w_A Cysteine synthase; tran 28.7 2.2E+02 0.0074 26.3 8.8 65 56-120 57-122 (322)
85 4aec_A Cysteine synthase, mito 28.6 2.1E+02 0.0071 27.9 8.8 64 56-119 165-229 (430)
86 4h1h_A LMO1638 protein; MCCF-l 28.3 1.6E+02 0.0056 27.3 7.8 59 60-118 8-85 (327)
87 2q3b_A Cysteine synthase A; py 28.3 2.4E+02 0.0082 25.8 9.0 80 38-120 42-122 (313)
88 3ju7_A Putative PLP-dependent 27.8 1.2E+02 0.0042 28.7 7.2 58 58-118 72-136 (377)
89 2egu_A Cysteine synthase; O-ac 27.2 2.5E+02 0.0086 25.6 9.0 79 39-120 41-120 (308)
90 1vjk_A Molybdopterin convertin 26.8 1.2E+02 0.0042 22.1 5.4 46 12-72 35-94 (98)
91 3sr3_A Microcin immunity prote 26.3 1.9E+02 0.0065 27.0 7.8 59 60-118 9-86 (336)
92 2pqm_A Cysteine synthase; OASS 25.6 2.5E+02 0.0087 26.1 8.8 80 38-120 53-133 (343)
93 1h2b_A Alcohol dehydrogenase; 25.6 2.3E+02 0.0079 26.5 8.6 63 55-120 176-240 (359)
94 1eg5_A Aminotransferase; PLP-d 25.3 2.2E+02 0.0076 26.5 8.6 8 207-214 211-218 (384)
95 1toa_A Tromp-1, protein (perip 24.8 1.6E+02 0.0056 27.1 7.1 88 42-129 172-264 (313)
96 1ve1_A O-acetylserine sulfhydr 24.6 4E+02 0.014 24.2 10.4 65 55-120 50-117 (304)
97 3mfq_A TROA, high-affinity zin 24.5 1.2E+02 0.0042 27.4 6.1 87 41-127 137-228 (282)
98 3tqh_A Quinone oxidoreductase; 24.5 1.9E+02 0.0063 26.6 7.6 76 39-119 125-204 (321)
99 3tla_A MCCF; serine protease, 24.4 2.1E+02 0.007 27.2 7.7 60 59-118 38-116 (371)
100 3two_A Mannitol dehydrogenase; 24.0 2E+02 0.0069 26.7 7.8 74 39-116 149-225 (348)
101 1y80_A Predicted cobalamin bin 23.8 2.2E+02 0.0076 24.2 7.4 55 66-120 90-148 (210)
102 3l6b_A Serine racemase; pyrido 23.6 1.6E+02 0.0054 27.6 6.9 59 64-123 76-134 (346)
103 1zsy_A Mitochondrial 2-enoyl t 23.3 2.4E+02 0.0083 26.3 8.2 79 39-118 139-223 (357)
104 3hh8_A Metal ABC transporter s 22.9 1.2E+02 0.0041 27.7 5.7 82 42-125 158-246 (294)
105 4e5s_A MCCFLIKE protein (BA_56 22.7 2.2E+02 0.0075 26.5 7.5 59 60-118 8-85 (331)
106 2jwk_A Protein TOLR; periplasm 22.7 1.5E+02 0.0053 19.9 5.0 27 20-46 36-62 (74)
107 3s2e_A Zinc-containing alcohol 21.5 2.3E+02 0.0078 26.2 7.6 77 39-119 139-218 (340)
108 3ujp_A Mn transporter subunit; 21.4 1.6E+02 0.0055 27.1 6.2 85 42-128 165-256 (307)
109 1o69_A Aminotransferase; struc 21.4 3.1E+02 0.011 25.8 8.7 56 60-118 68-129 (394)
110 1xvl_A Mn transporter, MNTC pr 21.0 1.9E+02 0.0064 26.8 6.6 86 42-129 179-271 (321)
111 3fpc_A NADP-dependent alcohol 21.0 2.2E+02 0.0075 26.6 7.4 76 39-118 139-218 (352)
112 2v03_A Cysteine synthase B; py 20.8 4.2E+02 0.014 24.0 9.1 78 39-119 37-115 (303)
113 3ri6_A O-acetylhomoserine sulf 20.7 2.9E+02 0.0099 26.7 8.3 61 68-128 100-163 (430)
114 2jtq_A Phage shock protein E; 20.5 1.9E+02 0.0064 20.0 5.3 46 38-90 22-67 (85)
115 4ej6_A Putative zinc-binding d 20.1 2.6E+02 0.0088 26.3 7.7 59 55-117 174-233 (370)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=9.7e-82 Score=662.37 Aligned_cols=514 Identities=25% Similarity=0.373 Sum_probs=408.4
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEEeCC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSIIYNN--------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~--------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~ 79 (569)
....+.+|+.++|+++++.+||++|+++.+ +++||+||.++++++|.+|.+.|+++||+|+|+++|++++++
T Consensus 13 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 92 (549)
T 3g7s_A 13 SLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92 (549)
T ss_dssp CCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 445688999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 80 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
++|||+++|++++|++|.++.+++.+++++++++++|++....+.+........ ...++..+..
T Consensus 93 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------ 156 (549)
T 3g7s_A 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG----VERVFVVGGE------------ 156 (549)
T ss_dssp HHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC----CCEEEEETCS------------
T ss_pred HHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC----CcEEEEeCCC------------
Confidence 999999999999999999999999999999999999999988887777665433 3445544322
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecC
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p 239 (569)
...+.+++..............++|+++|+|||||||.||||.++|+++...+......+++..+|++++..|
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSC
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCc
Confidence 2445555554433322222233489999999999999999999999999999988888899999999999999
Q ss_pred chhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCc
Q 044926 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPP 319 (569)
Q Consensus 240 l~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~ 319 (569)
++|.+++...+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++..........++++|.+++||++++
T Consensus 230 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 230 MFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVA 309 (549)
T ss_dssp TTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCC
Confidence 99999998878888999999999999999999999999999999999999999887544442233449999999999999
Q ss_pred HHHHHHHHh-----cC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCccc
Q 044926 320 AAVLLRTES-----LG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSA 391 (569)
Q Consensus 320 ~~~~~~~~~-----~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~ 391 (569)
+++.+++.+ ++ +++++.||+||++++++.+... ......++|.|.+++ +++|+|++++.++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~ 378 (549)
T 3g7s_A 310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDGREL 378 (549)
T ss_dssp HHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEE
T ss_pred HHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCCcCC
Confidence 999998874 45 8999999999998877654321 113456889999998 9999998899999
Q ss_pred CCCCCceeEEEEecCcccccccCCccccccccC--CCC--eeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHH
Q 044926 392 KRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT--DDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVES 467 (569)
Q Consensus 392 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~ 467 (569)
+.| +.|||+|+|++++.||+++++.+...|. .+| ||+|||+|++++||.+++.||.||+||++|++|+|.+||+
T Consensus 379 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~ 456 (549)
T 3g7s_A 379 GVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEA 456 (549)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHH
T ss_pred CCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHH
Confidence 988 8999999999999999999999999883 366 9999999999999999999999999999999999999999
Q ss_pred HHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHH
Q 044926 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547 (569)
Q Consensus 468 ~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l 547 (569)
+|.++|+|.+++|++.+++..|+.++++|++.++.....+.++|+++++++|+.|++|..++++++||+|++||++|++|
T Consensus 457 ~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L 536 (549)
T 3g7s_A 457 LLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLL 536 (549)
T ss_dssp HHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC------------
T ss_pred HHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHH
Confidence 99999999999999999998899999999998774334788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC
Q 044926 548 REIAENMGSS 557 (569)
Q Consensus 548 ~~~~~~~~~~ 557 (569)
++++.+..+.
T Consensus 537 ~~~~~~~~~~ 546 (549)
T 3g7s_A 537 REKEAEGHHH 546 (549)
T ss_dssp ----------
T ss_pred HHHhhccccc
Confidence 9988765543
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.3e-81 Score=656.37 Aligned_cols=506 Identities=26% Similarity=0.393 Sum_probs=438.0
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.+|+.++|.++++.+|+++|+++. ++.+||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 589999999999999999999985 589999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++....+.+.+...... ..++.++.... ....+
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------------~~~~~ 159 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD-----VKVMCVDSAPD----------------GCLHF 159 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT-----CEEEESSCCCT----------------TCEET
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC-----ceEEEecCCCC----------------CccCH
Confidence 9999999999999999999999999999887776666543321 23343332110 02344
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc----cCCCCCCCEEEEecCchhhhhh
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS----DWSVPTQPVYLWTLPMFHSNGW 246 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~~~~g~ 246 (569)
+++....... .+.....++|+++|+|||||||.||||.++|+++...+..... .+++..+|++++..|++|.+++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (536)
T 3ni2_A 160 SELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYAL 238 (536)
T ss_dssp HHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHH
T ss_pred HHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHH
Confidence 4544433221 1223356789999999999999999999999999887765543 4568899999999999999998
Q ss_pred hH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 247 CF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 247 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........++ ++|.+++||+++++++.++
T Consensus 239 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~gGe~l~~~~~~~ 316 (536)
T 3ni2_A 239 NSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS--SLRMIKSGGAPLGKELEDT 316 (536)
T ss_dssp HHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCT--TCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCc--cceEEEECCCCCCHHHHHH
Confidence 65 57778899999999999999999999999999999999999999988765555555 9999999999999999999
Q ss_pred HH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEE
Q 044926 326 TE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403 (569)
Q Consensus 326 ~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 403 (569)
++ .+ ++++++.||+||++++++.+...... .......++|.|.++. +++|+|++++..++.| +.|||++
T Consensus 317 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v 387 (536)
T 3ni2_A 317 VRAKFPQARLGQGYGMTEAGPVLAMCLAFAKE------PFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICI 387 (536)
T ss_dssp HHHHCTTSEEEEEEECGGGSSEEEECGGGSSS------CCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCCccccccccccchhhhcccccCCc------cccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEE
Confidence 98 55 89999999999998777665322110 0112345789999999 9999999899999988 8999999
Q ss_pred ecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEec
Q 044926 404 RGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483 (569)
Q Consensus 404 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 483 (569)
+|+.++.||+++++.+...|..++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus 388 ~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~ 467 (536)
T 3ni2_A 388 RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGL 467 (536)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred eCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEee
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 484 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
+++..|+.++++|+..++.. .+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 468 ~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 468 KDEDAGEVPVAFVVKSEKSQ--ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EETTTEEEEEEEEEECTTCC--CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ecCCCCceeEEEEEecCCCC--CCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99888899999999887765 788999999999999999999999999999999999999999998865
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.4e-81 Score=655.71 Aligned_cols=517 Identities=34% Similarity=0.534 Sum_probs=402.3
Q ss_pred CCCCCCchHHHHHHHHHHcCCCCeEEe----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 9 ANSTPLTPLVFLERAATVYGDSPSIIY----NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~al~~----~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
+...++|+.++|+++++.+|+++|+++ .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||
T Consensus 13 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 345678999999999999999999994 4579999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+++|++++|++|.++.+++.+++++++++++|++.+..+.+......... ...++.++.....
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------- 155 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT---VQHFVVMDEKAPE-------------- 155 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSS---CCEEEESSSCCCT--------------
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCC---ccEEEEecCCCCc--------------
Confidence 99999999999999999999999999999999999887766665543321 2344444332100
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhh--hhccCCCCCCCEEEEecCchh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN--TLSDWSVPTQPVYLWTLPMFH 242 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~--~~~~~~~~~~d~~~~~~pl~~ 242 (569)
....+++++...... ....++++++|+|||||||.||||.++|+++...... ....++++++|++++..|++|
T Consensus 156 -~~~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 156 -GYLAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230 (541)
T ss_dssp -TCEEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTS
T ss_pred -ccccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchh
Confidence 023455554433221 2345689999999999999999999999999876655 334567889999999999999
Q ss_pred hhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHH
Q 044926 243 SNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAA 321 (569)
Q Consensus 243 ~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~ 321 (569)
.+++...+.+++.|+++++.+. +++..+++.++++++|++.++|+++..|++........++ ++|.+++||++++++
T Consensus 231 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~gG~~l~~~ 308 (541)
T 1v25_A 231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLK--TLRRLVVGGSAAPRS 308 (541)
T ss_dssp HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCS--SCCEEEECSSCCCHH
T ss_pred hhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcch--hccEEEECCCCCCHH
Confidence 9999777888999999998864 7999999999999999999999999999876543334444 999999999999999
Q ss_pred HHHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 322 VLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 322 ~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
+.++++.+++++++.||+||++++++.+.....+..++.........++|.|.+++ +++|+|+ ++..++.++++.|||
T Consensus 309 ~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl 386 (541)
T 1v25_A 309 LIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEV 386 (541)
T ss_dssp HHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEE
T ss_pred HHHHHHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEE
Confidence 99999778999999999999988777654333332233232334567899999998 9999997 677777543368999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++||+++.||+++++.+...|..+|||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.+||+|.+++|+
T Consensus 387 ~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv 466 (541)
T 1v25_A 387 QLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466 (541)
T ss_dssp EEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEE
T ss_pred EEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+.+++.+++.++++|+.. +.. .+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++.+.
T Consensus 467 ~~~~~~~~~~~~a~vv~~-~~~--~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 467 AIPHPKWQERPLAVVVPR-GEK--PTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp EEECSSSSEEEEECC----------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EecCCCcCceEEEEEEEC-CCC--CCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 999998889999998876 322 566889999999 8999999999999999999999999999999987654
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=9.9e-80 Score=645.17 Aligned_cols=503 Identities=24% Similarity=0.334 Sum_probs=429.6
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
+++.|+.++|+++++.+|+++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
++|++|.++.+++.++++.++++++|++++.. ..........+. ...++..++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------- 161 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT---LKNIIVAGEAE----------------- 161 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTT---CCCEEEESCCT-----------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCC---ccEEEEcCCcc-----------------
Confidence 99999999999999999999999999987632 222333322221 34444433211
Q ss_pred ccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhh
Q 044926 166 FFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g 245 (569)
.+.++....... .......++|+++++|||||||.||||.++|+++...+......++++.+|++++..|++|.++
T Consensus 162 ---~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (539)
T 1mdb_A 162 ---EFLPLEDLHTEP-VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYP 237 (539)
T ss_dssp ---TSEEGGGCCCCC-CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred ---chhhhhhccccc-cccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccch
Confidence 011111111111 1112356789999999999999999999999999998888888889999999999999999999
Q ss_pred hhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 246 WCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 246 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
+.. .+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..+++.......+++ ++|.+++||+++++++.
T Consensus 238 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~~~~gG~~l~~~~~ 315 (539)
T 1mdb_A 238 LSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLS--SLQVLQVGGAKFSAEAA 315 (539)
T ss_dssp HHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCT--TCCEEEEESSCCCHHHH
T ss_pred hhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCcc--ceeEEEEcCCCCCHHHH
Confidence 874 77888999999999889999999999999999999999999999876543444555 99999999999999999
Q ss_pred HHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEE
Q 044926 324 LRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIV 402 (569)
Q Consensus 324 ~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 402 (569)
+++. .+++++++.||+||++..+. ... ........++|.|.++..+++|+|+ ++.+++.| +.|||+
T Consensus 316 ~~~~~~~~~~~~~~YG~TE~~~~~~-~~~---------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~ 382 (539)
T 1mdb_A 316 RRVKAVFGCTLQQVFGMAEGLVNYT-RLD---------DPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLL 382 (539)
T ss_dssp TTHHHHTCSEEEEEEECTTSCEEEC-CTT---------SCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEE
T ss_pred HHHHHHhCCcEEEEEcCCCCccccc-CCC---------CcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEE
Confidence 9987 57999999999999643222 110 0111234678999977658999997 78888887 899999
Q ss_pred EecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 403 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
|+||+++.||+++++.+...|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 383 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 462 (539)
T 1mdb_A 383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462 (539)
T ss_dssp EECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred eeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence 99999999999999999999987999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
.+++.+|+.++++|+..+. . .+.++++++++++ |+.|++|+.++++++||+|++||++|++|++++.+..
T Consensus 463 ~~~~~~g~~~~a~vv~~~~-~--~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 463 MPDQFLGERSCVFIIPRDE-A--PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp EEETTTEEEEEEEEEESSS-C--CCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred ccccccCceEEEEEEECCC-C--CCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 9998888889999988742 2 5789999999998 9999999999999999999999999999999887653
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=7.5e-80 Score=640.54 Aligned_cols=493 Identities=25% Similarity=0.373 Sum_probs=426.3
Q ss_pred HHHHHHHHHcCCCCeEE---eCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeec
Q 044926 18 VFLERAATVYGDSPSII---YNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI 94 (569)
Q Consensus 18 ~~l~~~a~~~p~~~al~---~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (569)
++|.++++.+|++.++. ..++++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 57899999999999988 466899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhh
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
+|.++.+++.+++++++++++|++.+..+.+........ ..+..+..... ..+.+..
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------------~~~~~~~ 140 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-----ATVETLGPDGR------------------GSLTDAA 140 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-----CEEEECCTTSC------------------SHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-----ceEEEecCCcc------------------cccchhh
Confidence 999999999999999999999999876554444333221 12333322110 1122222
Q ss_pred hcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHHHH
Q 044926 175 AKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWAMA 253 (569)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~~~ 253 (569)
..... ........++|+++|+|||||||.||||.++|+++...+......++++++|++++..|++|.+++.. .+.++
T Consensus 141 ~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l 219 (503)
T 4fuq_A 141 AGASE-AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219 (503)
T ss_dssp HTSCS-CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHH
T ss_pred hcCCC-CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHH
Confidence 11111 11122356789999999999999999999999999999998888899999999999999999999765 66788
Q ss_pred HhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCe
Q 044926 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFK 332 (569)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~ 332 (569)
+.|+++++.+.+++..+++.++ ++|++.++|+++..+++........+. ++|.+++||+++++++.+.+. .++++
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gg~~l~~~~~~~~~~~~~~~ 295 (503)
T 4fuq_A 220 FARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTG--HMRLFISGSAPLLADTHREWSAKTGHA 295 (503)
T ss_dssp HTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTT--TCCEEEECSSCCCHHHHHHHHHHHSCC
T ss_pred HhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchh--hcEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999998 899999999999999998765555555 999999999999999999988 56999
Q ss_pred eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccc
Q 044926 333 VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGY 412 (569)
Q Consensus 333 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 412 (569)
+++.||+||++..+.... . ......++|.|.+++ +++|+|++++.+++.| +.|||+|+|++++.||
T Consensus 296 ~~~~YG~TE~~~~~~~~~-~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY 361 (503)
T 4fuq_A 296 VLERYGMTETNMNTSNPY-D----------GDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGY 361 (503)
T ss_dssp EEECCEETTTEECBCCCS-S----------SCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCB
T ss_pred ccceEcccccCcccccCC-C----------CCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhh
Confidence 999999999976543221 1 112335789999998 9999998899999988 8999999999999999
Q ss_pred cCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCcee
Q 044926 413 LKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492 (569)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~ 492 (569)
+++++.+...|..++||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.+
T Consensus 362 ~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~ 441 (503)
T 4fuq_A 362 WRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGV 441 (503)
T ss_dssp TTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCcee
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 493 CAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 493 ~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+++|+..++.. .+.++++++++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus 442 ~a~v~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 442 TAVVVRDKGAT--IDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEEEECTTCC--CCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEEEeCCCCC--CCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 99999887765 7889999999999999999999999999999999999999999998765
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.3e-79 Score=641.00 Aligned_cols=502 Identities=30% Similarity=0.430 Sum_probs=433.2
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCe--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNI--TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFA 87 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~--~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 87 (569)
.....|+.++|+++++.+|+++|+++.++ ++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 35778999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCccc
Q 044926 88 AAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFF 167 (569)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (569)
|++++|++|.++.+++.+++++++++++|++......+.......... ..++.+.. .
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------------~ 148 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPP---GTVTDWIG--------------------A 148 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCC---TTCCEEEE--------------------H
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCc---cEEEEccC--------------------c
Confidence 999999999999999999999999999999998887776665543321 12221111 1
Q ss_pred chhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhh
Q 044926 168 STYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWC 247 (569)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~ 247 (569)
..+.+.+....... ......++|+++|+|||||||.||||.++|+++...+......+++..+|++++..|++|..++.
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 149 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH
T ss_pred ccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH
Confidence 22333333322211 22335678999999999999999999999999999999888889999999999999999999998
Q ss_pred HHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH
Q 044926 248 FPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE 327 (569)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~ 327 (569)
..+..++.|+++++.+.+++..+++.++++++|++.++|+++..+.+........++ ++|.+++||+++++++.+.+.
T Consensus 228 ~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~i~~gGe~l~~~~~~~~~ 305 (517)
T 3r44_A 228 TVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAP--DFRYFITGGAPMPEALIKIYA 305 (517)
T ss_dssp HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCT--TCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCC--cccEEEECCCCCCHHHHHHHH
Confidence 867777799999999999999999999999999999999999999887544444444 899999999999999999998
Q ss_pred hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 328 SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 328 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+.++++++.||+||+++.++..... .......++|.|.++. +++|+|+ ++..++.| .|||+++|+.
T Consensus 306 ~~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~ 371 (517)
T 3r44_A 306 AKNIEVVQGYALTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDI 371 (517)
T ss_dssp HTTCEEEEEEECGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETT
T ss_pred hcCCcEEEeecccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcc
Confidence 7799999999999998776654321 1123456789999988 9999997 67666654 6999999999
Q ss_pred ccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCC
Q 044926 408 IMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEF 487 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 487 (569)
++.||+++++.+...|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++.
T Consensus 372 v~~GY~~~p~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~ 450 (517)
T 3r44_A 372 LLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEK 450 (517)
T ss_dssp SCSEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred hhhhhCCChhhhHhhhc-CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccc
Confidence 99999999999999997 89999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 488 WGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 488 ~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+|+.++++| ..++.. .+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus 451 ~g~~~~a~v-~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 451 WGEIAAAIV-VADQNE--VSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp TEEEEEEEE-EECTTT--CCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred cCceEEEEE-ECCCCC--CCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 888888887 555444 68899999999999999999999999999999999999999999997653
No 7
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.2e-80 Score=650.83 Aligned_cols=509 Identities=20% Similarity=0.274 Sum_probs=340.5
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
.+.++|+.++|+++++.+|+++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+++|+++.++.+++.+++++++++++|++.... ............ ...++.......
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------- 167 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLS---PEIILMLNHQAT--------------- 167 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCC---CSEEEEETCCTT---------------
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccC---cceEEEecCCcc---------------
Confidence 999999999999999999999999999987653 333333332221 233443332211
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~ 244 (569)
...+.++...............++++++|+|||||||.||||.++|+++...+......+++.++|++++.+|++|.+
T Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 245 (544)
T 3o83_A 168 --DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNF 245 (544)
T ss_dssp --SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHH
T ss_pred --ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEe
Confidence 022334443333222222345678999999999999999999999999999999988899999999999999999999
Q ss_pred hhhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHH
Q 044926 245 GWCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 245 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........++ ++|.+++||+++++++
T Consensus 246 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~i~~gG~~l~~~~ 323 (544)
T 3o83_A 246 MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQ--SLKLLQVGGASFPESL 323 (544)
T ss_dssp HHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHT--TCCEEEEESSCCCHHH
T ss_pred ecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCC--cceEEEEcCCCCCHHH
Confidence 8864 67888899999999999999999999999999999999999999887655544555 9999999999999999
Q ss_pred HHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 323 LLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 323 ~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
.+++. .+++++++.||+||++..+.... ........++|.|+.+..+++|+|+ ++.+++.| +.|||
T Consensus 324 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl 390 (544)
T 3o83_A 324 ARQVPEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDDEIKIVDE-QYREVPEG--EIGML 390 (544)
T ss_dssp HTHHHHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEE
T ss_pred HHHHHHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCcEEEEECC-CCCCCCCC--CeeEE
Confidence 99998 56999999999999874443221 1112334678999643339999995 78888888 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++||+++.||+++++.+...|..++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 391 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv 470 (544)
T 3o83_A 391 ATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALV 470 (544)
T ss_dssp EEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-------------------------------
T ss_pred EEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
+.+++..|+.++++|+..+. . .+.+++++++++ +|+.|++|..++++++||+|++||++|++|++++.+.+.
T Consensus 471 ~~~~~~~g~~~~a~vv~~~~-~--~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 543 (544)
T 3o83_A 471 AIVDEQFGEKSCAFIVSRNP-E--LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTSTT 543 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred eccCCCCCceEEEEEEeCCC-C--CCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhccC
Confidence 99999889999999987763 2 566789999998 799999999999999999999999999999999876544
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.2e-78 Score=635.87 Aligned_cols=506 Identities=22% Similarity=0.318 Sum_probs=432.9
Q ss_pred CchHH-HHHHHHHHcCCCCeEEe--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 14 LTPLV-FLERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 14 ~tl~~-~l~~~a~~~p~~~al~~--~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
+|+.+ +|.++++.+ +++|+++ .++++||+||.++++++|..|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 58999 899999999 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++.+..+.+.......+. ...++.++..... .....+
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------~~~~~~ 166 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTT---IKTIVILDSKVDY--------------RGYQCL 166 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTT---CCEEEETTCSSCB--------------TTBCBH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCC---CCEEEEeCCcccc--------------cccccH
Confidence 99999999999999999999999999999887766655443321 2344443321100 012345
Q ss_pred hHhhhcCCCC-cccCCCC-----CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCEEEEecCch
Q 044926 171 ESLVAKGDPE-FEWIRPR-----TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMF 241 (569)
Q Consensus 171 ~~~~~~~~~~-~~~~~~~-----~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~ 241 (569)
++++...... ....... .++++++++|||||||.||+|.++|+++...+...... ++++++|++++..|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 246 (548)
T 2d1s_A 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFH 246 (548)
T ss_dssp HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHH
Confidence 5555443211 1110111 23899999999999999999999999999888777666 6788999999999999
Q ss_pred hhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHH
Q 044926 242 HSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAA 321 (569)
Q Consensus 242 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~ 321 (569)
|.+++...+...+.|+++++.+.+++..+++.|+++++|+++++|+++..|.+........++ ++|.+++||++++++
T Consensus 247 h~~g~~~~~~~~l~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~gG~~l~~~ 324 (548)
T 2d1s_A 247 HGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLS--NLVEIASGGAPLSKE 324 (548)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCT--TCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccccc--ceeEEEEcCccCCHH
Confidence 999987744444499999998889999999999999999999999999999987654444444 999999999999999
Q ss_pred HHHHHH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCcee
Q 044926 322 VLLRTE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLG 399 (569)
Q Consensus 322 ~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~G 399 (569)
+.+++. .+ ++.+++.||+||+++.++.+... .....++|.|.++. +++|+|++++..++.| +.|
T Consensus 325 ~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~G 390 (548)
T 2d1s_A 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRG 390 (548)
T ss_dssp HHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCE
T ss_pred HHHHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCe
Confidence 999998 55 68899999999998776653211 12345789999998 9999998789999887 899
Q ss_pred EEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 400 EIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 400 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
||+++|++++.||+++++.+...|..+|||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.+||+|.+++
T Consensus 391 El~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 470 (548)
T 2d1s_A 391 EVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470 (548)
T ss_dssp EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEE
T ss_pred EEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEE
Confidence 99999999999999999999999977999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCcccc-EEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPK-TVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 480 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
|++.+++.+|+.++++|++.++.. .+.++|+++++++|+.+++|. .++++++||+|++||++|++|++++.+..
T Consensus 471 V~~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 471 VAGVPDPVAGELPGAVVVLESGKN--MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCC--CCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred EEEEEcCCCCeeeEEEEEEcCCCC--CCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 999999888888999999877654 678999999999999999999 99999999999999999999999987643
No 9
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5.4e-80 Score=649.24 Aligned_cols=513 Identities=23% Similarity=0.322 Sum_probs=339.4
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEE---e--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSII---Y--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~---~--~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 82 (569)
..+.++.|+.++|.++++++|+++|++ + .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 14 FYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp SSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred CCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 345678899999999999999999976 3 45799999999999999999999999999999999999999999999
Q ss_pred HhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCC
Q 044926 83 AVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNIS 162 (569)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (569)
||+++|++++|++|.++.+++.++++.++++++|++.+..+.+......... ...++.++.....
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------ 158 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPI---IQKIIIMDSKTDY------------ 158 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTT---CCEEEETTCSSCB------------
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCC---cceEEEEcCCccc------------
Confidence 9999999999999999999999999999999999999988877776655443 3445544332110
Q ss_pred CCcccchhhHhhhcCCCC------cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCE
Q 044926 163 DDQFFSTYESLVAKGDPE------FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPV 233 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~ 233 (569)
.....+.+++...... ..+.....++++++|+|||||||.||+|.++|+++...+...... +++.++|+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~ 236 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence 0123444444322211 111122345789999999999999999999999998877766654 57889999
Q ss_pred EEEecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 234 YLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 234 ~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
+++..|++|.+++...+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..+++.......+++ ++|.+++
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~ 314 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS--NLHEIAS 314 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCT--TCCEEEE
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcc--cccEEEE
Confidence 99999999999998888899999999999999999999999999999999999999999988655555555 9999999
Q ss_pred eCCCCcHHHHHHHH-hcCCe-eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCccc
Q 044926 314 AGAPPPAAVLLRTE-SLGFK-VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSA 391 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~ 391 (569)
||+++++++.+++. .++.. +++.||+||+++.++.+... .....++|.|.+++ +++|+|++++..+
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~ 382 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTL 382 (550)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBC
T ss_pred ecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCC
Confidence 99999999999998 56765 99999999998777654322 12345789999998 9999999899999
Q ss_pred CCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHc
Q 044926 392 KRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYS 471 (569)
Q Consensus 392 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~ 471 (569)
+.| +.|||+|+|++++.||+++++.+...|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+
T Consensus 383 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 383 GVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------
T ss_pred CCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 988 899999999999999999999999999779999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCcc-ccEEEEecccCCCCCCcccHHHHHHH
Q 044926 472 NPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMV-PKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 472 ~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~-p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
+|+|.+++|++.+++.+|+.++++|+..++.. .+.++++++++++++.++. |..++++++||+|++||++|++|+++
T Consensus 461 ~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT--MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEeecCCCCceEEEEEEecCCCC--CCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHH
Confidence 99999999999999988999999999887755 6778999999999988865 45799999999999999999999999
Q ss_pred HHhcC
Q 044926 551 AENMG 555 (569)
Q Consensus 551 ~~~~~ 555 (569)
+.+..
T Consensus 539 ~~~~~ 543 (550)
T 3rix_A 539 LIKAK 543 (550)
T ss_dssp -----
T ss_pred HHhhc
Confidence 87654
No 10
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=9e-80 Score=642.13 Aligned_cols=500 Identities=25% Similarity=0.383 Sum_probs=334.9
Q ss_pred CCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 9 ANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
+.++++|+.++|+++++.+||++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 1 ms~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 80 (509)
T 3ivr_A 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIG 80 (509)
T ss_dssp -CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred CCCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccc
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (569)
++++|++|.++.+++.+++++++++++|++.+....+......... ...++.+++.. .
T Consensus 81 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------------------~ 138 (509)
T 3ivr_A 81 AILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG---VKKAYAIGDGS-------------------G 138 (509)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSS---CCEEEESSCCC-------------------S
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCC---ceEEEEcCCCC-------------------c
Confidence 9999999999999999999999999999999887765555443332 34444444321 1
Q ss_pred hhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH
Q 044926 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF 248 (569)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~ 248 (569)
.+.++...............++|+++|+|||||||.||+|.++|+++...+......++++++|++++..|++|.+++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~ 218 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL 218 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH
Confidence 11222221111111223456789999999999999999999999999999998888999999999999999999999988
Q ss_pred HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-
Q 044926 249 PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE- 327 (569)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~- 327 (569)
.+..++.|++.++...+++..+++.++++++|++.++|+++..+++.. ....+. ++|.++.+|++ ...+++.
T Consensus 219 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~--~lr~~~~~g~~---~~~~~~~~ 291 (509)
T 3ivr_A 219 MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLA--SLRAVTGLDTP---ETIERFEA 291 (509)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGT--TCCEEEEECCH---HHHHHHHH
T ss_pred HHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchh--hhheecccCCh---HHHHHHHH
Confidence 888888888888888899999999999999999999999999998875 233344 89999999987 6666666
Q ss_pred hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 328 SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 328 ~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
.+ ++++++.||+||++++++.+.... ....+|.|.++. +++|+|+ ++.+++.| +.|||+|+|+
T Consensus 292 ~~~~~~~~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~ 355 (509)
T 3ivr_A 292 TCPNATFWATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGP 355 (509)
T ss_dssp HCTTCEEEEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEEST
T ss_pred hcCCCeEEcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecC
Confidence 45 899999999999987776543221 123489999998 9999997 58888888 8999999999
Q ss_pred cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccC--CCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecC
Q 044926 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS--KDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~--~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 484 (569)
+++.||+++++.+...|. ++||+|||+|++++||++++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 356 ~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~ 434 (509)
T 3ivr_A 356 TVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVP 434 (509)
T ss_dssp TSCCEETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC-------------------------------------
T ss_pred CccccccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecc
Confidence 999999999999999998 899999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 485 DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 485 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
++.+++.++++|+..++.. .+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+...
T Consensus 435 ~~~~~~~~~a~v~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 435 DPQWSEAIKAVCVCKPGES--IAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccCcEEEEEEEeCCCCC--CCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 9988899999999887655 677899999999999999999999999999999999999999999987654
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=7.2e-78 Score=626.62 Aligned_cols=485 Identities=26% Similarity=0.355 Sum_probs=411.4
Q ss_pred CchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 14 LTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
+|+.++|+++++.+||++|+++. ++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999988 8899999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEE--ccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFV--DFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+|++|.++.+++.+++++++++++|+ +.+..+.+.. ... ...++.+
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~----~~~~~~~------------------------- 129 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGS----GARIIFL------------------------- 129 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCC----CCEEEEG-------------------------
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccc----cceeEEe-------------------------
Confidence 99999999999999999999999999 7665443311 111 0112211
Q ss_pred hhHhhhcC-----CCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCC--CCCCEEEEecCchh
Q 044926 170 YESLVAKG-----DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV--PTQPVYLWTLPMFH 242 (569)
Q Consensus 170 ~~~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~--~~~d~~~~~~pl~~ 242 (569)
.+++... .... ......++++++|+|||||||.||||.++|+++...+......+++ +.+|++++..|++|
T Consensus 130 -~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 207 (504)
T 1t5h_X 130 -GDLVRDGEPYSYGPPI-EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYH 207 (504)
T ss_dssp -GGTEETTEECCCSCCC-CCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTS
T ss_pred -cchhhcCcccccCCcc-CCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhh
Confidence 1111110 0000 1123457899999999999999999999999999888887777888 88999999999999
Q ss_pred hhhhh-HHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHH
Q 044926 243 SNGWC-FPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAA 321 (569)
Q Consensus 243 ~~g~~-~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~ 321 (569)
.+++. ..+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++..........+.++|.+++||++++++
T Consensus 208 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~ 287 (504)
T 1t5h_X 208 VVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDA 287 (504)
T ss_dssp HHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHH
T ss_pred cchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHH
Confidence 99984 47788899999999999999999999999999999999999999987653211222234999999999999999
Q ss_pred HHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCC--cccCCCCCce
Q 044926 322 VLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSG--VSAKRDGSTL 398 (569)
Q Consensus 322 ~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~--~~~~~~~~~~ 398 (569)
+.+++. .+++.+++.||+||++ ...... ......+|.|.++. +++|+|.+.+ ..++.| +.
T Consensus 288 ~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~ 350 (504)
T 1t5h_X 288 VLETVHQHLPGEKVNIYGTTEAM-NSLYMR-------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EE 350 (504)
T ss_dssp HHHHHHHHCCSEEEEEEEETTTE-EEEEEE-------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CC
T ss_pred HHHHHHHhcCcceeeeecccccc-cccccc-------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--Cc
Confidence 999998 5699999999999983 222111 11234678888888 9999997442 677777 89
Q ss_pred eEEEEe-cCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcce
Q 044926 399 GEIVLR-GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477 (569)
Q Consensus 399 Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~ 477 (569)
|||+++ |+.++.||+++++.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+
T Consensus 351 GEl~v~gg~~~~~GY~~~~~~t~~~f~-~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 429 (504)
T 1t5h_X 351 GELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTE 429 (504)
T ss_dssp EEEEEECCTTSCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEE
T ss_pred ceEEEeCCceeeceecCCchhhhhhhc-CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcce
Confidence 999999 99999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHH
Q 044926 478 AAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 478 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~ 552 (569)
++|++.+++.+|+.++++|++.++.. .+.+++++++++ +|+.|++|+.++++++||+|++||++|++|+++++
T Consensus 430 a~Vv~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 430 VVVIGLADQRWGQSVTACVVPRLGET--LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEEEECSSSSEEEEEEEEECTTCC--CCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEEEeecCCCCcEEEEEEEecCCcC--cCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 99999999988999999999887654 678999999998 99999999999999999999999999999999873
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=8.6e-78 Score=627.66 Aligned_cols=499 Identities=19% Similarity=0.198 Sum_probs=420.6
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
||+.++|+++++.+|+++|+++.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++.++.+++.++++.++++++|++..... .. ... ..... ..+.++
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~----------~~--~~~-~~~~~---------------------~~~~~~ 126 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTV----------TD--LPV-RIVSE---------------------DNLKDI 126 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCS----------SC--CSS-EEEET---------------------HHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCcccc----------cc--ccc-ceech---------------------hhhhhh
Confidence 999999999999999999999999754210 00 111 11111 112222
Q ss_pred hhcC-CCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 174 VAKG-DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
.... ...........++|+++++|||||||.||+|.++|+++...+......+++..+|++++..|++|..++...+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 206 (512)
T 3fce_A 127 FFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPS 206 (512)
T ss_dssp HHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHH
T ss_pred cccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHH
Confidence 1111 111112233567899999999999999999999999999999888888999999999999999999999888899
Q ss_pred HHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 253 AAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 253 ~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
++.|+++++.+. +++..+++.++++++|++.++|+++..++.........++ ++|.+++||+++++++.+++. .
T Consensus 207 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~~G~~l~~~~~~~~~~~ 284 (512)
T 3fce_A 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLP--NMKTFLFCGEVLPNEVARKLIER 284 (512)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTST--TCCEEEECSSCCCHHHHHHHHHH
T ss_pred HhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCc--cccEEEEecCcCCHHHHHHHHHH
Confidence 999999999876 7899999999999999999999999999887765555555 999999999999999999998 5
Q ss_pred c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++++++.||+||+++.++...... .........++|.|.+++ +++|+|+ +|..++.| +.|||+++||+
T Consensus 285 ~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~ 354 (512)
T 3fce_A 285 FPKATIMNTYGPTEATVAVTGIHVTE------EVLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPS 354 (512)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEECCH------HHHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTT
T ss_pred CCCCEEEeCcccChhhhheeeEEecc------ccccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccc
Confidence 5 899999999999987766543211 111223445789999998 9999996 78888887 89999999999
Q ss_pred ccccccCCcccccccc---CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecC
Q 044926 408 IMLGYLKDPIGTRKCM---TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 484 (569)
++.||+++++.+...| ++++||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 355 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 433 (512)
T 3fce_A 355 VSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIK 433 (512)
T ss_dssp SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEE
T ss_pred cChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEe
Confidence 9999999999998887 34679999999999 7999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEecCCCCCC--CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCCCC
Q 044926 485 DEFWGETPCAFVSLKEGSKSK--PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSSSS 559 (569)
Q Consensus 485 ~~~~~~~~~~~v~~~~~~~~~--~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~~ 559 (569)
++..++.++++|+..++.... ...++++++++++|+.|++|..++++++||+|++||++|++|++.+.+.....+
T Consensus 434 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 434 KGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp ETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred cCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 887788889999887654311 123679999999999999999999999999999999999999999998876543
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.6e-77 Score=621.61 Aligned_cols=496 Identities=18% Similarity=0.214 Sum_probs=426.1
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
||+.++|+++|+.+|+++|+++.++++||+||.++++++|.+|.+. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999985 888999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|+++.++.+++.+++++++++++|++..... .... ..+ ....+.+
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~-----~~~------------------------~~~~~~~ 125 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVG-----QQI------------------------QTVSAEE 125 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCC-----CSS------------------------CEEEHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccc------hhcc-----ccc------------------------ceecHhh
Confidence 9999999999999999999999999754210 0000 000 0123344
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
+...............++++++|+|||||||.||+|.++|+++...+.+....+++..+|++++..|++|..++...+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 205 (511)
T 3e7w_A 126 LLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPC 205 (511)
T ss_dssp HHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHH
T ss_pred hhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHH
Confidence 44333222222233567899999999999999999999999999999988888999999999999999999998888889
Q ss_pred HHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 253 AAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 253 ~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
++.|+++++.+. +++..+++.++++++|++.++|+++..+++........++ ++|.+++||+++++++.+++. .
T Consensus 206 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~l~~~~~~G~~l~~~~~~~~~~~ 283 (511)
T 3e7w_A 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLP--HADTFMFCGEVLPVSVAKALLER 283 (511)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCT--TCCEEEECSSCCCHHHHHHHHHH
T ss_pred HhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCC--cccEEEEecCCCCHHHHHHHHHH
Confidence 999999998876 6899999999999999999999999999988765555555 999999999999999999998 4
Q ss_pred c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++++++.||+||+++.++.+.... .........++|.|.+++ +++|+|+ +|.+++.| +.|||+|+||+
T Consensus 284 ~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~ 353 (511)
T 3e7w_A 284 FPKAKIFNTYGPTEATVAVTSVEITN------DVISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPS 353 (511)
T ss_dssp CTTCEEEECCCCGGGSSCSEEEEECH------HHHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTT
T ss_pred CCCcEEEeCcccchheeeeeEEeccc------cccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCc
Confidence 5 899999999999987776543221 111122345689999998 9999997 68888888 89999999999
Q ss_pred ccccccCCccccccccC-CCC--eeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecC
Q 044926 408 IMLGYLKDPIGTRKCMT-DDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~-~~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 484 (569)
++.||+++++.+...|. .++ ||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 354 v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 432 (511)
T 3e7w_A 354 VSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQ 432 (511)
T ss_dssp SCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEC
T ss_pred cChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEc
Confidence 99999999999998883 123 7999999999 5999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCCCC--CHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 485 DEFWGETPCAFVSLKEGSKSKP--TEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 485 ~~~~~~~~~~~v~~~~~~~~~~--~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
++..++.++++|+..++..... ..++++++++++|+.|++|..++++++||+|++||++|++|++.+.+....
T Consensus 433 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 507 (511)
T 3e7w_A 433 PNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH 507 (511)
T ss_dssp SSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTC
T ss_pred CCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccc
Confidence 8888889999999877654111 136799999999999999999999999999999999999999999876543
No 14
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=3.5e-77 Score=629.45 Aligned_cols=505 Identities=21% Similarity=0.273 Sum_probs=408.7
Q ss_pred CCchH-HHHHHHHHHcCCCCeEEeC-----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 13 PLTPL-VFLERAATVYGDSPSIIYN-----NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 13 ~~tl~-~~l~~~a~~~p~~~al~~~-----~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
..++. ++|+++|+.+||++|+++. ++.+||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 34555 9999999999999999972 36899999999999999999999999999999999999999999999999
Q ss_pred ccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccH--HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR--ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+|++++|+++.++.+++.+++++++++++|++.+.. ..+.+........ ...++.++.....
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------- 197 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDI--PLKKAKVGGDVLE-------------- 197 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSC--CCEEEEESSSCCT--------------
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCc--ceEEEEeCCcccc--------------
Confidence 999999999999999999999999999999987754 5555554433221 1334444332110
Q ss_pred cccchhhHhhhcCCCCcccC---CCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCch
Q 044926 165 QFFSTYESLVAKGDPEFEWI---RPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
....+.+.+.......... ....++|+++|+|||||||.||+|.++|.+++..+......+++..++++++..|+.
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (580)
T 3etc_A 198 -GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSG 276 (580)
T ss_dssp -TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTT
T ss_pred -ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChH
Confidence 0245555554443322211 235678999999999999999999999999888777766677889999999999999
Q ss_pred hhhhhhH-HHHHHHhCceEEEe--ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCC
Q 044926 242 HSNGWCF-PWAMAAVGGTNICI--RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPP 318 (569)
Q Consensus 242 ~~~g~~~-~~~~~~~g~~~~~~--~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l 318 (569)
|..+... .+.+++.|+++++. ..+++..+++.|+++++|++.++|+++..|.+.. ....+++ ++|.+++||+++
T Consensus 277 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~--~lr~i~~gGe~l 353 (580)
T 3etc_A 277 WGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFS--TLKYAVVAGEPL 353 (580)
T ss_dssp STHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCT--TCCEEEECSSCC
T ss_pred HHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCc--cceEEEEccCCC
Confidence 9887765 56777888888877 4689999999999999999999999999998863 2333444 999999999999
Q ss_pred cHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCc
Q 044926 319 PAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST 397 (569)
Q Consensus 319 ~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~ 397 (569)
++++.+++. .+++++++.||+||++..+...... .....++|.|.+++ +++|+|+ +|.+++.| +
T Consensus 354 ~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~ 418 (580)
T 3etc_A 354 NPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--E 418 (580)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECT-TSCBCCTT--C
T ss_pred CHHHHHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECC-CCCCCCCC--C
Confidence 999999998 5699999999999997766544321 12345789999999 9999998 68888888 8
Q ss_pred eeEEEEec-----CcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 398 LGEIVLRG-----GCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 398 ~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
.|||+++| +.++.||+++++.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||.+|.++
T Consensus 419 ~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~ 497 (580)
T 3etc_A 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQH 497 (580)
T ss_dssp CEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTS
T ss_pred ceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 99999997 7899999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCCCCCceeEEEEEecCCCCC-CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 473 ~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
|+|.+++|++.+++..|+.++++|++.++... +...++|+++++++|+.|++|..++++++||+|++||++|++|++++
T Consensus 498 p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~ 577 (580)
T 3etc_A 498 PAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKD 577 (580)
T ss_dssp TTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC------------------
T ss_pred CCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHh
Confidence 99999999999999889999999999877541 12347899999999999999999999999999999999999999987
Q ss_pred Hh
Q 044926 552 EN 553 (569)
Q Consensus 552 ~~ 553 (569)
.+
T Consensus 578 ~~ 579 (580)
T 3etc_A 578 QS 579 (580)
T ss_dssp --
T ss_pred hc
Confidence 64
No 15
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.5e-76 Score=630.80 Aligned_cols=505 Identities=23% Similarity=0.325 Sum_probs=430.7
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
-++.+|+.++|++++. ||++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 4678999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
++||++|..+.+++.++++++++++++++.... ............ ...+........
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------- 162 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSS---IRVVQLLNDSGE--------------- 162 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTT---CCEEEEETCCST---------------
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCc---cceeeecccccc---------------
Confidence 999999999999999999999999999987653 223333222221 233333332211
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~ 244 (569)
..+.+......... ...+..++++++|+|||||||.||||.++|+++...+......+++..+|++++..|++|.+
T Consensus 163 ---~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 238 (617)
T 3rg2_A 163 ---HNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238 (617)
T ss_dssp ---TBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred ---cchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhh
Confidence 22333333222211 12335678999999999999999999999999999998888889999999999999999998
Q ss_pred hhhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHH
Q 044926 245 GWCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 245 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
++.. .+.+++.|+++++.+..++..+++.++++++|++.++|+++..+++..........+.++|.+++||+++++++
T Consensus 239 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 318 (617)
T 3rg2_A 239 AMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATL 318 (617)
T ss_dssp HHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHH
T ss_pred hhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHH
Confidence 8764 78889999999999889999999999999999999999999998876433333222339999999999999999
Q ss_pred HHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 323 LLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 323 ~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
.+++. .+++++++.||+||++..+.... .........+|.|..+...+.|+|+ ++.+++.| +.|||
T Consensus 319 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~GEl 385 (617)
T 3rg2_A 319 AARIPAEIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRL 385 (617)
T ss_dssp HHHHHHHTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEE
T ss_pred HHHHHHHhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCceEEEECC-CCCCCCCC--CceEE
Confidence 99987 56999999999999875443221 1112234578888755559999996 78889988 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+|+|+.+++||+++++.+...|..++||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 386 ~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv 465 (617)
T 3rg2_A 386 MTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV 465 (617)
T ss_dssp EEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEE
T ss_pred EecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+.+++..++.++++++..+. .+.+++++++++ .|+.|++|..++++++||+|++||++|++|++.+.+..
T Consensus 466 ~~~~~~~~~~~~a~vv~~~~----~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 466 SMEDELMGEKSCAYLVVKEP----LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEETTTEEEEEEEEEESSC----CCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred eccCcccCeeEEEEEEeCCC----CCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 99988888889999988763 578899999998 69999999999999999999999999999999887653
No 16
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.5e-76 Score=633.36 Aligned_cols=516 Identities=22% Similarity=0.304 Sum_probs=427.4
Q ss_pred chHHHHHHHHHHcCCCCeEEe------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 15 TPLVFLERAATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
++.++|+++++.+||++|+++ .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 578899999999999999997 23789999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
++++|+++.++.+++.+++++++++++|+++.. ...+.+....... .....++++.......
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~-------- 227 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNV-TSVEHVIVLKRTGSDI-------- 227 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTC-CSCCEEEEECSSCCCC--------
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCc-CCCCEEEEEeCCCCcc--------
Confidence 999999999999999999999999999998753 2334444432210 1134566554322100
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHh-hhhccCCCCCCCEEEEec
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV-NTLSDWSVPTQPVYLWTL 238 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~~~ 238 (569)
..... ....+.+++....... ......++|+++|+|||||||.||||+++|++++.... .....+++.++|++++..
T Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~ 305 (652)
T 1pg4_A 228 DWQEG-RDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 305 (652)
T ss_dssp CCCBT-TEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred cccCC-CceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEcc
Confidence 00000 1235666665433211 12234578999999999999999999999999876653 445568899999999999
Q ss_pred Cchhhhhhh-HHHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 239 PMFHSNGWC-FPWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 239 pl~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
|++|..++. ..+.+++.|+++++.+. +++..+++.++++++|+++++|+++..|++..........++++|.+++
T Consensus 306 ~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~ 385 (652)
T 1pg4_A 306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGS 385 (652)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEE
T ss_pred CCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEE
Confidence 999999984 47788999999999864 5899999999999999999999999999987543222233449999999
Q ss_pred eCCCCcHHHHHHHH-hcC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCc
Q 044926 314 AGAPPPAAVLLRTE-SLG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGV 389 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~ 389 (569)
||+++++++.+++. .++ +++++.||+||+++.++...... ......++|.|.+++ +++|+|+ +|.
T Consensus 386 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~-~g~ 454 (652)
T 1pg4_A 386 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDN-EGH 454 (652)
T ss_dssp ESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECT-TCC
T ss_pred ecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECC-CCC
Confidence 99999999999988 567 89999999999987665432110 112346889999998 9999997 688
Q ss_pred ccCCCCCceeEEEEec--CcccccccCCccccccccC--CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHH
Q 044926 390 SAKRDGSTLGEIVLRG--GCIMLGYLKDPIGTRKCMT--DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465 (569)
Q Consensus 390 ~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~i 465 (569)
+++.| +.|||+++| |++++|||++++.+...+. .+|||+|||+|++++||+++++||.||+||++|++|++.+|
T Consensus 455 ~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 455 PQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp BCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred CcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 88877 899999999 7899999999987766652 37899999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCC-CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccH
Q 044926 466 ESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK-PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544 (569)
Q Consensus 466 E~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r 544 (569)
|++|.+||+|.+++|++.+++..|+.++++|++.++.... ...++|+++++++|+.|++|+.++++++||+|++||++|
T Consensus 533 E~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R 612 (652)
T 1pg4_A 533 ESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612 (652)
T ss_dssp HHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCH
T ss_pred HHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchH
Confidence 9999999999999999999888889999999998765410 125789999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 044926 545 FVLREIAENM 554 (569)
Q Consensus 545 ~~l~~~~~~~ 554 (569)
++|++++.+.
T Consensus 613 ~~L~~~~~~~ 622 (652)
T 1pg4_A 613 RILRKIAAGD 622 (652)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhCC
Confidence 9999999875
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.9e-76 Score=619.99 Aligned_cols=501 Identities=23% Similarity=0.300 Sum_probs=423.3
Q ss_pred chHHHHHHHHHH-----cCCCCeEEeC-----CeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHH
Q 044926 15 TPLVFLERAATV-----YGDSPSIIYN-----NITYTWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 15 tl~~~l~~~a~~-----~p~~~al~~~-----~~~~Ty~el~~~v~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
++.++|+++++. +||++|+++. ++.+||+||.++++++|.+|.+. |+++||+|+|+++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 457999999999 9999999973 37899999999999999999999 999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|++++|++|.++.+++.+++++++++++|++.+..+.+.......+. .+.++.++.....
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------- 182 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD------------- 182 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTT---CCEEEEESSSCCT-------------
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCc---eeEEEEecccCcc-------------
Confidence 999999999999999999999999999999999999887776665544332 3345555432100
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHH--HHhhhhccCCCCCCCEEEEecCch
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFI--VAVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~--~~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
....+.+++........ .....++|+++|+|||||||.||||.++|+ ++. ..... ..++++.+|++++..|++
T Consensus 183 --~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~ 257 (570)
T 3c5e_A 183 --GWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTG 257 (570)
T ss_dssp --TSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTT
T ss_pred --ccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchH
Confidence 02345555544332211 123567899999999999999999999999 544 33433 667889999999999999
Q ss_pred hhhhhh-HHHHHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCC
Q 044926 242 HSNGWC-FPWAMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPP 318 (569)
Q Consensus 242 ~~~g~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l 318 (569)
|..++. ..+.++..|+++++.+ .+++..+++.|+++++|+++++|+++..+.+.. ....+++ ++|.+++||+++
T Consensus 258 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~--~lr~i~~gGe~l 334 (570)
T 3c5e_A 258 WILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFP--HLQNCVTVGESL 334 (570)
T ss_dssp SHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCT--TCCEEEEESSCC
T ss_pred HHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccc--cceEEEEcCCcC
Confidence 999987 4677888999998886 689999999999999999999999999999763 2222334 999999999999
Q ss_pred cHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCc
Q 044926 319 PAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST 397 (569)
Q Consensus 319 ~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~ 397 (569)
++++.+++. .+++++++.||+||++..+...... .....++|.|.+++ +++|+|+ ++.+++.| +
T Consensus 335 ~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~ 399 (570)
T 3c5e_A 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--T 399 (570)
T ss_dssp CHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--C
T ss_pred CHHHHHHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--C
Confidence 999999988 4799999999999998655433211 12345789999998 9999997 68888887 8
Q ss_pred eeEEEEe-----cCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 398 LGEIVLR-----GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 398 ~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
.|||+++ |++++.||+++++.+...|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++
T Consensus 400 ~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~ 478 (570)
T 3c5e_A 400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEH 478 (570)
T ss_dssp CEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTS
T ss_pred CCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 9999999 99999999999999999997 89999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCCCCCceeEEEEEecCCCCC---CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSKS---KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 473 ~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
|+|.+++|++.+++..|+.++++|++.++... +...++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 479 p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 558 (570)
T 3c5e_A 479 PAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558 (570)
T ss_dssp TTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHH
T ss_pred CCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHH
Confidence 99999999999998888889999998765311 123578999999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 044926 550 IAENMG 555 (569)
Q Consensus 550 ~~~~~~ 555 (569)
.+.+..
T Consensus 559 ~~~~~s 564 (570)
T 3c5e_A 559 KEWKMS 564 (570)
T ss_dssp HHTC--
T ss_pred HHHhhh
Confidence 886554
No 18
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.3e-77 Score=620.98 Aligned_cols=497 Identities=24% Similarity=0.340 Sum_probs=392.8
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
||+.++|.++++++||++|+++.++++||+||.++++++|.+|++. +||+|+|+++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5788999999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++.++.+++.+++++++++++|++.+.......... ... ...+.......... ... .... ........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~--~~~--~~~~---~~~~~~~~ 146 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDD---IEFAGRDITTNGLL--DNT--MGIQ---YDTSNETV 146 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC---------------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-ccc---ceeeeeeccccccc--ccc--cccc---cccchhhc
Confidence 9999999999999999999999998764322110000 000 00000000000000 000 0000 00000111
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~ 253 (569)
...............++|+++++|||||||.||+|.++|+++...+......++++++|++++..|++|.+|+...+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp ---CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred cccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 11111111112235678999999999999999999999999999998888889999999999999999999999888899
Q ss_pred HhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCee
Q 044926 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKV 333 (569)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i 333 (569)
+.|+++++.+.+++..+++.++++++|++.++|+++..|++....... ++|.+++||+++++++.+++.++++++
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~lr~i~~gG~~l~~~~~~~~~~~~~~~ 301 (501)
T 3ipl_A 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY-----NLQKILLGGAKLSATMIETALQYNLPI 301 (501)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT-----TCCEEEECSSCCCHHHHHHHHHTTCCE
T ss_pred HcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC-----cccEEEEeCCCCCHHHHHHHHHhCCCE
Confidence 999999999999999999999999999999999999999987543321 789999999999999999998889999
Q ss_pred eecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccccccc
Q 044926 334 SHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413 (569)
Q Consensus 334 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~ 413 (569)
++.||+||+++.+..+. .........++|.|.+++ +++|+|++. + +.|||+++|+.+++||+
T Consensus 302 ~~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~~------~--~~GEl~v~g~~~~~gY~ 363 (501)
T 3ipl_A 302 YNSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPNK------E--GHGELMIKGANVMNGYL 363 (501)
T ss_dssp EEEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCCS------S--CCEEEEEESTTSCSCCS
T ss_pred eccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCCC------C--CccEEEEeccchhhhhC
Confidence 99999999987655432 122233456889999998 999999852 2 67999999999999999
Q ss_pred CCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeE
Q 044926 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPC 493 (569)
Q Consensus 414 ~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~ 493 (569)
++++.+.. |. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++.+|+.++
T Consensus 364 ~~~~~t~~-~~-~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~ 441 (501)
T 3ipl_A 364 YPTDLTGT-FE-NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPK 441 (501)
T ss_dssp BSTTCCCS-EE-TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred cChhhcch-hc-CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEE
Confidence 99998877 65 89999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred EEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 494 AFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 494 ~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
++++.... .+.++|+++++++|+.|++|..++++++||+|++||++|++|++...+
T Consensus 442 a~v~~~~~----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 442 LYFVSESD----ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEEEESSC----CCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred EEEEeCCC----CCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 88886432 678999999999999999999999999999999999999999987654
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8.7e-77 Score=624.73 Aligned_cols=481 Identities=21% Similarity=0.242 Sum_probs=408.7
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
..|+.++|.++++.+|+++|+++.++++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|++|.++.+++.+++++++++++|++.+...... .... ...+..+..... .
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~----~~~~---~~~~~~~~~~~~---------------------~- 168 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIH----NIQF---NGQVEIFEEDTI---------------------K- 168 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHT----TSCC---CSEEEECCCSTT---------------------T-
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhh----hccc---cCceeeecchhh---------------------c-
Confidence 9999999999999999999999999987654322 1111 112222211100 0
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
... ......+..++|+++|+|||||||.||||.++|+++...+......++++++|++++..|++|..++...+.+
T Consensus 169 --~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 244 (563)
T 1amu_A 169 --IRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMA 244 (563)
T ss_dssp --TSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHH
T ss_pred --ccc--CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 000 0011123456799999999999999999999999999888888888899999999999999999998878888
Q ss_pred HHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhc
Q 044926 253 AAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL 329 (569)
Q Consensus 253 ~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~ 329 (569)
++.|+++++.+. +++..+++.++++++|++.++|+++..+... .+. ++|.+++||+++++++.+++.+
T Consensus 245 l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~--~lr~~~~gG~~l~~~~~~~~~~- 315 (563)
T 1amu_A 245 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RIL--SIQTLITAGSATSPSLVNKWKE- 315 (563)
T ss_dssp HTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCC--SCSEEEEESSCCCHHHHHHHTT-
T ss_pred HHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccc--cccEEEEEEecCCHHHHHHHHh-
Confidence 999999998865 6899999999999999999999998877532 233 8999999999999999999876
Q ss_pred CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccc
Q 044926 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIM 409 (569)
Q Consensus 330 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 409 (569)
.+++++.||+||++..++.+...... .....++|.|.++. +++|+|+ ++..++.| +.|||+++|++++
T Consensus 316 ~~~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~ 383 (563)
T 1amu_A 316 KVTYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLA 383 (563)
T ss_dssp TSEEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCC
T ss_pred CCeEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhC
Confidence 48999999999998766654322110 01235789999998 9999996 78888887 8999999999999
Q ss_pred ccccCCccccccccCC------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEec
Q 044926 410 LGYLKDPIGTRKCMTD------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483 (569)
Q Consensus 410 ~gy~~~~~~~~~~~~~------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 483 (569)
.||+++++.+...|.+ ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus 384 ~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~ 463 (563)
T 1amu_A 384 RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVH 463 (563)
T ss_dssp CEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEE
T ss_pred hhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEe
Confidence 9999999998888742 4599999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 484 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
+++..++.++++|+.... .+.++|+++++++|+.|++|..++++++||+|++||++|++|++..
T Consensus 464 ~~~~~~~~~~a~vv~~~~----~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 464 KDHQEQPYLCAYFVSEKH----IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp ECTTSCEEEEEEEEESSC----CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred ecCCCCeEEEEEEEeCCC----CCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 998888889999887542 5788999999999999999999999999999999999999998754
No 20
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3e-76 Score=617.73 Aligned_cols=499 Identities=20% Similarity=0.230 Sum_probs=409.4
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
+..|+.++|+++++.+|+++|+.+.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|+++.++.+++.++++.++++++|++.+.... ...+..+. ...+.
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~-------------~~~~~~~~---------------------~~~~~ 127 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLT-------------IEGISLVS---------------------LSEIE 127 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSC-------------CTTSEEEE---------------------HHHHH
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccc-------------cccCcccc---------------------hhhhh
Confidence 999999999999999999999999998753211 01111110 01111
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc--CCCCCCCEEEEecCchhhhhhhHH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD--WSVPTQPVYLWTLPMFHSNGWCFP 249 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~--~~~~~~d~~~~~~pl~~~~g~~~~ 249 (569)
.......+ ........++|+++|+|||||||.||+|.++|+++...+.+.... +++...+++++..|++|..++...
T Consensus 128 ~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 206 (521)
T 3l8c_A 128 SAKLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206 (521)
T ss_dssp HHHHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHH
T ss_pred hcccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHH
Confidence 11111111 111223567899999999999999999999999998877766655 678899999999999999998888
Q ss_pred HHHHHhCceEEEeccC---CHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHH
Q 044926 250 WAMAAVGGTNICIRKF---DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT 326 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~ 326 (569)
+.++..|+++++.+.. ++..+++.+.++++|++.++|+++..+..........++ ++|.+++||+++++++.+++
T Consensus 207 ~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gG~~l~~~~~~~~ 284 (521)
T 3l8c_A 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMP--ALTHFYFDGEELTVSTARKL 284 (521)
T ss_dssp HHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCT--TCCEEEECSSCCCHHHHHHH
T ss_pred HHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCc--cceEEEEecccCCHHHHHHH
Confidence 8889999999888763 899999999999999999999999999887665555555 99999999999999999998
Q ss_pred H-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEe
Q 044926 327 E-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404 (569)
Q Consensus 327 ~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 404 (569)
. .+ ++++++.||+||+++.++.+.... .........++|.|.+++ +++|+|+ +|..++.| +.|||+|+
T Consensus 285 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~ 354 (521)
T 3l8c_A 285 FERFPSAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVT 354 (521)
T ss_dssp HHHCTTCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEE
T ss_pred HHHCCCceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEec
Confidence 7 55 899999999999987766543221 111222345789999998 9999997 68888888 89999999
Q ss_pred cCcccccccCCcccccccc---CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 405 GGCIMLGYLKDPIGTRKCM---TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 405 ~~~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
||+++.||+++++.+...| ..++||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 355 g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv 434 (521)
T 3l8c_A 355 GPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAV 434 (521)
T ss_dssp STTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEE
T ss_pred ccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEE
Confidence 9999999999999998887 4568999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC-CCceeEEEEEecCCCCCCC-----CHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 482 ARPDEF-WGETPCAFVSLKEGSKSKP-----TEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 482 ~~~~~~-~~~~~~~~v~~~~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+..++. .++.++++|+..++..... ..++|+++++++|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus 435 ~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 435 PRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp CCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred EeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 887543 3577899999887643111 1578999999999999999999999999999999999999999987765
Q ss_pred CC
Q 044926 556 SS 557 (569)
Q Consensus 556 ~~ 557 (569)
..
T Consensus 515 ~~ 516 (521)
T 3l8c_A 515 GH 516 (521)
T ss_dssp --
T ss_pred cc
Confidence 44
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4.4e-76 Score=629.67 Aligned_cols=518 Identities=23% Similarity=0.314 Sum_probs=424.4
Q ss_pred CchHHHHHHHHHHcCCCCeEEe------CCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 14 LTPLVFLERAATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLL-SIGISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~------~~~~~Ty~el~~~v~~~A~~L~-~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
.++.++|+++++.+||++|+++ ..+++||+||.++++++|..|+ +.|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 4688999999999999999998 3478999999999999999999 99999999999999999999999999999
Q ss_pred ccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccH---------HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCC
Q 044926 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR---------ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSH 157 (569)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (569)
+|++++|+++.++.+++.+++++++++++|+++... ..+.+.....+ ....++++.......
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~~~~~~~~~------ 232 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP---GVRHVLVYRKTNNPS------ 232 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT---TCCEEEEECSSCCSS------
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC---CCceEEEEecCCCCc------
Confidence 999999999999999999999999999999987642 23333333222 135566655331100
Q ss_pred CCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHh-hhhccCCCCCCCEEEE
Q 044926 158 HPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV-NTLSDWSVPTQPVYLW 236 (569)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~ 236 (569)
...... ....|.+++...... ....+..++|+++|+|||||||.||||.++|.+++..+. .....+++.++|++++
T Consensus 233 -~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~ 309 (663)
T 1ry2_A 233 -VAFHAP-RDLDWATEKKKYKTY-YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT 309 (663)
T ss_dssp -CCCCSS-SEEEHHHHHTTSCSC-CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEE
T ss_pred -cccCCC-ccccHHHHHhhcCCC-CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 000000 123466665543221 112235678999999999999999999999999876654 3445688999999999
Q ss_pred ecCchhhhhhh-HHHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceE
Q 044926 237 TLPMFHSNGWC-FPWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311 (569)
Q Consensus 237 ~~pl~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~ 311 (569)
..|++|..++. ..+.+++.|+++++.+. +++..+++.|+++++|+++++|+++..|.+..........++++|.+
T Consensus 310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i 389 (663)
T 1ry2_A 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCL 389 (663)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEE
T ss_pred cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEE
Confidence 99999999984 46788999999999864 58999999999999999999999999999876532223334499999
Q ss_pred EEeCCCCcHHHHHHHH-hcC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCC
Q 044926 312 VTAGAPPPAAVLLRTE-SLG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKS 387 (569)
Q Consensus 312 ~~~g~~l~~~~~~~~~-~~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~ 387 (569)
++||+++++++++++. .++ +++++.||+||+++.++.+..... ......++|.|.++. +++|+|+++
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~v~i~d~~~ 460 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNT 460 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSS
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCC--------cccCCCccccCcCCC-eEEEEcCCC
Confidence 9999999999999998 466 899999999999876665421000 012346789999999 999999877
Q ss_pred CcccCC-CCCceeEEEEec--CcccccccCCccccccccC--CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeH
Q 044926 388 GVSAKR-DGSTLGEIVLRG--GCIMLGYLKDPIGTRKCMT--DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSS 462 (569)
Q Consensus 388 ~~~~~~-~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~ 462 (569)
|.+++. | +.|||+++| |++++|||++++.+...+. .+|||+|||+|++++||++++.||.||+||++|++|++
T Consensus 461 g~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~ 538 (663)
T 1ry2_A 461 GEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 538 (663)
T ss_dssp TTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCH
T ss_pred CCcCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCH
Confidence 888876 5 789999999 5899999999988777663 27899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCC-----CC---CCHHHHHHHHhccCCCCccccEEEEeccc
Q 044926 463 VEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-----SK---PTEKEMIEYCRGRLPHYMVPKTVVFMDEL 534 (569)
Q Consensus 463 ~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----~~---~~~~~l~~~l~~~l~~~~~p~~~~~~~~i 534 (569)
.+||++|.++|+|.+++|++.+++..|+.++++|++.++.. .+ ...++|+++++++|+.|++|+.|+++++|
T Consensus 539 ~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~l 618 (663)
T 1ry2_A 539 AEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDL 618 (663)
T ss_dssp HHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCC
T ss_pred HHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCC
Confidence 99999999999999999999999888899999999876542 10 22578999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHhc
Q 044926 535 PKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 535 P~t~~GKi~r~~l~~~~~~~ 554 (569)
|+|++||++|++|++++.+.
T Consensus 619 P~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 619 PKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CBCTTSCBCHHHHHHSCC--
T ss_pred CCCCccCchHHHHHHHHcCC
Confidence 99999999999999987664
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.5e-75 Score=613.24 Aligned_cols=498 Identities=24% Similarity=0.289 Sum_probs=410.1
Q ss_pred chHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeec
Q 044926 15 TPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI 94 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (569)
++.++|+++++ +|+++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 38899999999 99999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCC-CCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP-PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
++.++.+++.+++++++++++|++.+..+.+......... . ..++..+..... ......++++
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~ 167 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH---DGCQLIVSQPRESE-------------PRLAPLFEEL 167 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC------CCEEEEECC-------------------CCCBHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccc---cCceEEEecccccc-------------cccccchhhh
Confidence 9999999999999999999999998877766555432221 2 334433322100 0001245555
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHH-HHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI-FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWA 251 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l-~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~ 251 (569)
........ ......++|+++++|||||||.||+|.++|+++ ..........+++.++|++++..|++|.+++.. .+.
T Consensus 168 ~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 246 (529)
T 2v7b_A 168 IDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTF 246 (529)
T ss_dssp HHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHH
T ss_pred hccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHH
Confidence 54322211 122356789999999999999999999999999 666666666778999999999999999999875 566
Q ss_pred HHHhCceEEEe-ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hc
Q 044926 252 MAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL 329 (569)
Q Consensus 252 ~~~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~ 329 (569)
++..|+++++. +.+++..+++.++++++|++.++|+++..+++.......... ++|.+++||+++++++.+++. .+
T Consensus 247 ~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gGe~l~~~~~~~~~~~~ 324 (529)
T 2v7b_A 247 PLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADV--AIRICTSAGEALPREIGERFTAHF 324 (529)
T ss_dssp HHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGC--CCCEEEECSSCCCHHHHHHHHHHH
T ss_pred HHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCC--ceEEEEEcCCCCCHHHHHHHHHHh
Confidence 78889998887 568999999999999999999999999999886543332122 899999999999999999998 46
Q ss_pred CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccc
Q 044926 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIM 409 (569)
Q Consensus 330 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 409 (569)
++++++.||+||+++++..+.... ....++|.|.+++ +++|+|+ +|.+++.| +.|||+|+|++++
T Consensus 325 g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~ 389 (529)
T 2v7b_A 325 GCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAA 389 (529)
T ss_dssp SCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCC
T ss_pred CCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCcc
Confidence 999999999999976665442111 1235789999998 9999996 78888887 8999999999999
Q ss_pred ccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCC
Q 044926 410 LGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489 (569)
Q Consensus 410 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~ 489 (569)
.||+++++.+...|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..+
T Consensus 390 ~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~ 467 (529)
T 2v7b_A 390 VMYWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGL 467 (529)
T ss_dssp CCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTE
T ss_pred cccCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCc
Confidence 999999999999897 8999999999999999999999999999999999999999999999999999999999 55567
Q ss_pred ceeEEEEEecCCCC-CCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 490 ETPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 490 ~~~~~~v~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
+.++++|+..++.. .+...++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 468 ~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 468 VKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 78889998876542 1113468999999999999999999999999999999999999986
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.6e-77 Score=631.12 Aligned_cols=484 Identities=22% Similarity=0.283 Sum_probs=319.0
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
...|+.++|+++++++||++|+++.++++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|++|.++.+++.+++++++++++|++......+ . ....+.+.+...
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~----~~~~~~~~~~~~---------------------- 199 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------T----GTTTLYVEDEAA---------------------- 199 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------C----SSEEEECCC-------------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------c----CCcceeeecccc----------------------
Confidence 9999999999999999999999999987543211 0 011111111000
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWA 251 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~ 251 (569)
.............++|+++|+|||||||.||||.++|+++...+.. ...++++++|++++..|++|..+....+.
T Consensus 200 ----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 274 (570)
T 4gr5_A 200 ----SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFG 274 (570)
T ss_dssp --------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHH
T ss_pred ----ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHH
Confidence 0000011112356789999999999999999999999999776654 45668899999999999998877777788
Q ss_pred HHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 252 MAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 252 ~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
+++.|+++++.+ .+++..+++.++++++|++.++|+++..|++... ..+. ++|.+++||++++....+++. .
T Consensus 275 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~--~lr~~~~gG~~l~~~~~~~~~~~ 349 (570)
T 4gr5_A 275 ALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFE--GVRYAITGGEPASVPHVAKARRD 349 (570)
T ss_dssp HHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGT--TCSEEEEESSCCCHHHHHHHHHH
T ss_pred HHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCC--CceEEEEecccCCHHHHHHHHHh
Confidence 899999998886 4789999999999999999999999999987542 2344 899999999999999888887 4
Q ss_pred c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++++++.||+||++++++.+.... ........++|.|.++. +++|+|+ ++.+++.| +.|||+|+|++
T Consensus 350 ~~~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~ 418 (570)
T 4gr5_A 350 HPALRLGNGYGPAESMGFTTHHAVVA-------GDLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAG 418 (570)
T ss_dssp CTTCEEEEEECCGGGCSCSEEEECCG-------GGTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETT
T ss_pred CCCcEEEEeechhhheeeeeeeeecc-------cccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecc
Confidence 4 899999999999987766543221 11112234689999998 9999996 68888887 89999999999
Q ss_pred ccccccCCccccccccCC--------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 408 IMLGYLKDPIGTRKCMTD--------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~~--------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
++.||+++++.+...|.. ++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++
T Consensus 419 v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~ 498 (570)
T 4gr5_A 419 LAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAA 498 (570)
T ss_dssp CCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------
T ss_pred cchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEE
Confidence 999999999999888753 379999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 480 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
|++.+++.+++.++++|+..+... ..+.++|+++|+++|+.|++|..++++++||+|++||++|++|++.
T Consensus 499 Vv~~~~~~~~~~~~a~vv~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 499 VLAQDSRLGDKQLVAYVVAERADA-PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEeeCCCCCeEEEEEEEecCCCC-CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 999998888888999988765421 1567899999999999999999999999999999999999999875
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.6e-75 Score=620.02 Aligned_cols=481 Identities=19% Similarity=0.175 Sum_probs=396.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
..+.|+.++|+++|+++||++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++...... .. ......+.
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~-------~~----~~~~~~~~------------------------- 147 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP-------AN----GLPCVPVR------------------------- 147 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC-------CT----TSCEEEGG-------------------------
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCccccc-------cc----CCceeeec-------------------------
Confidence 9999999999999999999999999976542110 00 00011000
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHH
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~ 250 (569)
.... ...........++++++|+|||||||.||||.++|+++...+.. ...+++.++|+++...|++|..++...+
T Consensus 148 -~~~~--~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 148 -HLPA--APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp -GCCC--CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred -cCCc--CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 0000 00011112245789999999999999999999999999877665 4567889999999999999999998889
Q ss_pred HHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-
Q 044926 251 AMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE- 327 (569)
Q Consensus 251 ~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~- 327 (569)
.+++.|+++++.+ .+++..+++.++++++|++.++|+++..+.+.. ...+. ++|.+++||+++++...+++.
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~--~lr~v~~gGe~l~~~~~~~~~~ 298 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLG--GLRQLLTGGDILSVPHVRRALL 298 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGT--TCSEEEEESSCCCHHHHHHHHH
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCC--CccEEEEEeCcCCHHHHHHHHH
Confidence 9999999998864 479999999999999999999999999998642 22344 899999999999988888776
Q ss_pred hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 328 SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 328 ~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
.+ ++++++.||+||++..++.+.... ........++|.|.++. +++|+|++....++.| +.|||+|+|+
T Consensus 299 ~~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~ 368 (620)
T 4dg8_A 299 RHPRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGA 368 (620)
T ss_dssp HCTTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEET
T ss_pred hCCCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEecc
Confidence 44 899999999999987765433221 12223346789999998 9999998555446777 8999999999
Q ss_pred cccccccCCccccccccCCC-------CeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 407 CIMLGYLKDPIGTRKCMTDD-------GWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~-------~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
.+++||+++++.+...|..+ +||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus 369 ~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~ 448 (620)
T 4dg8_A 369 GLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCA 448 (620)
T ss_dssp TCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEE
T ss_pred ccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEE
Confidence 99999999999999988643 79999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 480 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
|++.+++..+. ++++++.... ++++.++++|+.|++|..++++++||+|++||++|++|++.+.+..
T Consensus 449 Vv~~~~~~~~~-lv~~~~~~~~--------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 515 (620)
T 4dg8_A 449 LLVRERNGVKQ-LLCAWTGKAD--------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPL 515 (620)
T ss_dssp EEEEEETTEEE-EEEEEEECTT--------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC
T ss_pred EEEEeCCCceE-EEEEEecChH--------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccccc
Confidence 99988774333 4444443211 2345567789999999999999999999999999999998876544
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.5e-76 Score=659.12 Aligned_cols=517 Identities=25% Similarity=0.377 Sum_probs=345.0
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
++|+.++|.++++++||++|+++. ++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 589999999999999999999986 689999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++.+..+.+....... ...++.++...... .......+
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~~~ 203 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-----GVVIVCIDDNESVP-----------IPEGCLRF 203 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-----CCEEEECCCCTTSC-----------CCTTEEEG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-----CceEEEeCCccccc-----------CCcccccH
Confidence 999999999999999999999999999988766655554322 12334333221100 00112344
Q ss_pred hHhhhcCCCC--cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc----cCCCCCCCEEEEecCchhhh
Q 044926 171 ESLVAKGDPE--FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS----DWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 171 ~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~~~~ 244 (569)
.++....... ........++|+++|+|||||||.||||.++|+++...+..... .+++.++|++++.+|++|.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 4444333221 11222356789999999999999999999999999887765543 45688999999999999999
Q ss_pred hhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 245 GWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 245 g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
++.. .+.++..|+++++.+++++..+++.++++++|++.++|+++..+++.......+++ ++|.+++||+++++++.
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~~~~gg~~l~~~~~ 361 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLS--SIRVVKSGAAPLGKELE 361 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCT--TCCEEEESSCCCCSSHH
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCcc--ceEEEEEcCCCCCHHHH
Confidence 9865 56778899999999999999999999999999999999999999988765555555 99999999999999999
Q ss_pred HHHH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 324 LRTE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 324 ~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
+++. .+ ++++++.||+||++.+++.+..... ........++|.|.++. +++|+|++++.+++.| +.|||
T Consensus 362 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl 432 (979)
T 3tsy_A 362 DAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEI 432 (979)
T ss_dssp HHHHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEE
T ss_pred HHHHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEE
Confidence 9998 45 8999999999999877665432111 00112345789999998 9999999899999988 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+|+|+.+++||+++|+.+...|..++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 433 ~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv 512 (979)
T 3tsy_A 433 CIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVV 512 (979)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------
T ss_pred EEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCCC
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSSS 558 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 558 (569)
+.+++..|+.++++|+..++.. .+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+...+.
T Consensus 513 ~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 587 (979)
T 3tsy_A 513 AMKEEAAGEVPVAFVVKSKDSE--LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSG 587 (979)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EecccCCCcEEEEEEEECCCCC--CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCc
Confidence 9999888889999998877654 67789999999999999999999999999999999999999999998765443
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.4e-75 Score=602.87 Aligned_cols=479 Identities=24% Similarity=0.322 Sum_probs=386.5
Q ss_pred CCCchHHHHHHHHHHcCC-CCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 12 TPLTPLVFLERAATVYGD-SPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~-~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.-+|+.++|.++++.+|+ ++|+++.++++||+||.++++++|.+|. .|++|+++++|++++++++|||+++|++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 346788899999999988 9999999999999999999999999874 3889999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++.+... ..... ....+.+...
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~----~~~~~~~~~~----------------------- 142 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALG----ALERVDVDVR----------------------- 142 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGT----TSEEEECCTT-----------------------
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhc----cccccccccc-----------------------
Confidence 999999999999999999999999999864210 00000 0111111100
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-H
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-P 249 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~ 249 (569)
...........++|+++|+|||||||.||||.++|+++...+......++++.+|++++..|++|..|+.. .
T Consensus 143 -------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 215 (505)
T 3nyq_A 143 -------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215 (505)
T ss_dssp -------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTT
T ss_pred -------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHH
Confidence 00001112356789999999999999999999999999999998888899999999999999999999865 7
Q ss_pred HHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCC-CCCCcCCCceEEEeCCCCcHHHHHHHH-
Q 044926 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK-KPLKLAKPVHLVTAGAPPPAAVLLRTE- 327 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~- 327 (569)
+.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+++...... ....+.++|.+++||+++++.+.+++.
T Consensus 216 ~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~ 294 (505)
T 3nyq_A 216 LGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA 294 (505)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHH
Confidence 8889999999999999999999999 8899999999999999987432211 111233889999999999999999988
Q ss_pred hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCC-CCCceeEEEEecC
Q 044926 328 SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKR-DGSTLGEIVLRGG 406 (569)
Q Consensus 328 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~-~~~~~Gel~v~~~ 406 (569)
.+++++++.||+||++..+...... .....++|.|.+++ +++|+|+ ++.+++. ++++.|||+|+|+
T Consensus 295 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g~ 361 (505)
T 3nyq_A 295 ATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRGP 361 (505)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEEST
T ss_pred hcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEecC
Confidence 5699999999999997655443211 12335789999998 9999997 5676665 2238999999999
Q ss_pred cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccC-CCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCC
Q 044926 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS-KDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~-~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 485 (569)
.++.||+++++.+...|..++||+|||+|++++||.+++.||. |++||++|++|+|.+||++|.++|+|.+++|++.++
T Consensus 362 ~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~ 441 (505)
T 3nyq_A 362 NLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPD 441 (505)
T ss_dssp TSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred chhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeEC
Confidence 9999999999999999988999999999999999999999998 599999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 486 EFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 486 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
+.+|+.++++|+..+... ..+.++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 442 ~~~g~~l~a~vv~~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 442 PDLGERIVAWIVPADPAA-PPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TTTEEEEEEEEEESSTTS-CCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCcEEEEEEEECCCCC-CCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 988999999999876322 267899999999999999999999999999999999999999986
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=9e-74 Score=608.79 Aligned_cols=520 Identities=17% Similarity=0.176 Sum_probs=417.9
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYN----NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVP 85 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~----~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~ 85 (569)
..+++|+.++|+++|+.+||++|+++. ++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~ 86 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL 86 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 347889999999999999999999874 4799999999999999999999999999999999999999999999999
Q ss_pred hccceEeeccCCC---CHHHHHHHHhhcCCeEEEEccccHHHHHHHH-hcCCCCCCCCCEEEEeCCCcccccccCCCCCC
Q 044926 86 FAAAVLNTINTRL---DARTVSLLLQHCQSKLVFVDFHSRALVREAV-SLFPPDLKPPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 86 ~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
++|++++|++|.. +.+++.++++.++++++|++.+....+.... ..... ...+..+....
T Consensus 87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------------- 150 (590)
T 3kxw_A 87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPK---FLKIPAIALES------------- 150 (590)
T ss_dssp HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCE---ETTEEEEEGGG-------------
T ss_pred HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccc---ccccceeechh-------------
Confidence 9999999999988 4578999999999999999877655432211 11100 11122111110
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCch
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
+.... ..........++|+++|+|||||||.||||.++|+++...+......++++++|++++.+|++
T Consensus 151 -----------~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 151 -----------IELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPH 218 (590)
T ss_dssp -----------CCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred -----------ccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCC
Confidence 00000 000111235678999999999999999999999999999999998899999999999999999
Q ss_pred hhhhhhH-HHHHHHhCceEEEeccC----CHHHHHHHHHHhCcceeechhHHHHHHHcCCCCC-CCCCCcCCCceEEEeC
Q 044926 242 HSNGWCF-PWAMAAVGGTNICIRKF----DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD-KKPLKLAKPVHLVTAG 315 (569)
Q Consensus 242 ~~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~-~~~~~~~~l~~~~~~g 315 (569)
|.+|+.. .+.+++.|+++++.+++ ++..+++.++++++|++.++|.++..+.+..... .....++++|.+++||
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 9999876 67788899998888764 8999999999999999999999999887753221 1222344999999999
Q ss_pred CCCcHHHHHHHH-hc------CCeeeecccccccccceeecccccccccC---------------cH-HHHhhhhcccCc
Q 044926 316 APPPAAVLLRTE-SL------GFKVSHGYGLTETGGIVVSCAWKRNWNLL---------------PA-AEKAKLKARQGV 372 (569)
Q Consensus 316 ~~l~~~~~~~~~-~~------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~g~ 372 (569)
+++++++.+++. .+ ++++++.||+||++++++.+.....+... .. ........++|.
T Consensus 299 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 378 (590)
T 3kxw_A 299 EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN 378 (590)
T ss_dssp SCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCE
T ss_pred CCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCC
Confidence 999999999887 33 34799999999998877754332111100 00 011123457788
Q ss_pred ccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCC------CC--eeeecceEEEecCCcEE
Q 044926 373 KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD------DG--WFYTGDVGVMHSDGYLE 444 (569)
Q Consensus 373 ~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~dg~l~ 444 (569)
|.++ ++|+|++++.+++.| +.|||+|+||+++.||+++++.+...|.. +| ||+|||+|+++ ||.++
T Consensus 379 p~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~ 452 (590)
T 3kxw_A 379 PIQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452 (590)
T ss_dssp ESSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEE
T ss_pred CCCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEE
Confidence 8775 889999889999888 89999999999999999999999888863 24 99999999999 99999
Q ss_pred EeccCCCeEEeCceeeeHHHHHHHH-HcCCCcc--eeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCC
Q 044926 445 IKDRSKDVIISGGENLSSVEVESVL-YSNPAVN--EAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH 521 (569)
Q Consensus 445 ~~GR~~~~i~~~G~~v~~~~iE~~l-~~~~~i~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~ 521 (569)
+.||.||+||++|++|+|.+||++| ..+|.|. +++|++.+++. ++.++++++..++.....+.+++.++++++++.
T Consensus 453 ~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~ 531 (590)
T 3kxw_A 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYE 531 (590)
T ss_dssp EEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7889998 79999988775 677888888876643225668899999998874
Q ss_pred -Ccccc-EEEEe--cccCCCCCCcccHHHHHHHHHhcCCCCCcCccc
Q 044926 522 -YMVPK-TVVFM--DELPKTSTGKIQKFVLREIAENMGSSSSPLSRS 564 (569)
Q Consensus 522 -~~~p~-~~~~~--~~iP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~ 564 (569)
+++|. .++++ ++||+|++||++|++|++++.+...+..+.|++
T Consensus 532 ~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~~~~~~~ 578 (590)
T 3kxw_A 532 NHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIVATWQL 578 (590)
T ss_dssp HHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCCSEEEET
T ss_pred HcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCceeeeecc
Confidence 67775 55555 799999999999999999999988776665554
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3.1e-73 Score=600.14 Aligned_cols=499 Identities=18% Similarity=0.189 Sum_probs=314.4
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeCC----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYNN----------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~----------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~ 76 (569)
....++++|+.++|+++|+++||++|+++.+ +++||+||.++++++|..|.+.|+ +||+|+|+++|+++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 3444688999999999999999999998743 789999999999999999999999 79999999999999
Q ss_pred HHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccC
Q 044926 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQS 156 (569)
Q Consensus 77 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (569)
+++++|||+++|++++|++|.++.+++.+++++++++++|++++..... .. ......+....
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~---~~~~~~~~~~~-------- 153 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-------EL---PPETKVLDTKN-------- 153 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-------CC---CTTCEEEETTC--------
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-------cc---Cccceeecccc--------
Confidence 9999999999999999999999999999999999999999986543211 00 01111111110
Q ss_pred CCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc--------CCC
Q 044926 157 HHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD--------WSV 228 (569)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~--------~~~ 228 (569)
..+.+.+...... .......++++++|+|||||||.||||.++|+++...+...... +.+
T Consensus 154 -----------~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~ 221 (562)
T 3ite_A 154 -----------QSFIENLSTQDTS-DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL 221 (562)
T ss_dssp -----------HHHHHHHHHSCCS-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred -----------hhhhhhccccccc-ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhccc
Confidence 1222222222111 11223456788999999999999999999999998776654432 457
Q ss_pred CCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCC-HHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCC
Q 044926 229 PTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFD-ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAK 307 (569)
Q Consensus 229 ~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 307 (569)
...+++++..|++|..++...+.++..|+++++.+.+. +..+++.++++++|++.++|+++..+.... .+++ +
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~--~ 295 (562)
T 3ite_A 222 GGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAP--H 295 (562)
T ss_dssp TTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGST--T
T ss_pred CcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccC--c
Confidence 78899999999999888888888899999988876543 577889999999999999999998875432 2344 8
Q ss_pred CceEEEeCCCCcHHHHHHHHh-cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCC
Q 044926 308 PVHLVTAGAPPPAAVLLRTES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPK 386 (569)
Q Consensus 308 l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~ 386 (569)
+|.+++||+++++++.+++.+ +++++++.||+||++..+........ ....++|.|.++. +++|+|++
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~ 364 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPG 364 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTT
T ss_pred eEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCC
Confidence 999999999999999999984 58999999999999876665432211 1234689999998 99999998
Q ss_pred CCcccCCCCCceeEEEEecCcccccccCCccccccccCCCC--eeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHH
Q 044926 387 SGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVE 464 (569)
Q Consensus 387 ~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~ 464 (569)
++..++.| +.|||+|+|+.++.|||++++.+...+. +| ||+|||+|++++||++++.||.||+||++|++|+|.+
T Consensus 365 ~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~e 441 (562)
T 3ite_A 365 SNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGE 441 (562)
T ss_dssp SSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEEEEEECTTSCEEEEEEC---------------
T ss_pred CCCCCCCC--CceEEEEeccccchhhCCCccccccccC-CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHH
Confidence 89989888 8999999999999999999998887665 45 9999999999999999999999999999999999999
Q ss_pred HHHHHHcC-CCcceeEEEecCCCCCCceeEEEEEecCCCCC-----------CCCHHHHHHHHhccCCCCccccEEEEec
Q 044926 465 VESVLYSN-PAVNEAAVVARPDEFWGETPCAFVSLKEGSKS-----------KPTEKEMIEYCRGRLPHYMVPKTVVFMD 532 (569)
Q Consensus 465 iE~~l~~~-~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~l~~~l~~~l~~~~~p~~~~~~~ 532 (569)
||++|.++ +.+.+++|++.+++..++..++.++...+... ....++|+++|+++|+.|++|+.+++++
T Consensus 442 IE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~ 521 (562)
T 3ite_A 442 VSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPIS 521 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEec
Confidence 99999998 77888888888888777766655554433221 1123589999999999999999999999
Q ss_pred ccCCC-CCCcccHHHHHHHHHhcCC
Q 044926 533 ELPKT-STGKIQKFVLREIAENMGS 556 (569)
Q Consensus 533 ~iP~t-~~GKi~r~~l~~~~~~~~~ 556 (569)
+||+| ++||++|++|++++.++..
T Consensus 522 ~lP~t~~~GKi~r~~L~~~~~~~~~ 546 (562)
T 3ite_A 522 FIPLRDTSAKTDAKALEHMFHTLSL 546 (562)
T ss_dssp -------------------------
T ss_pred cCCCCCCCCcchHHHHHHHHhccCH
Confidence 99998 8999999999999987753
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.1e-71 Score=585.33 Aligned_cols=513 Identities=19% Similarity=0.229 Sum_probs=411.3
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEe---CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIY---NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFA 87 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~---~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 87 (569)
....|+.++|++++..+|+.+++.. .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++
T Consensus 18 ~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (576)
T 3gqw_A 18 ADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYA 97 (576)
T ss_dssp SCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 3456899999999999999888765 3378999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCC-------HHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCC
Q 044926 88 AAVLNTINTRLD-------ARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160 (569)
Q Consensus 88 G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (569)
|++++|+++.++ .+++.++++.++++++|++.+....+........ .+..+..
T Consensus 98 G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~------~~~~~~~-------------- 157 (576)
T 3gqw_A 98 GLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNP------ELHVLSH-------------- 157 (576)
T ss_dssp TCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCT------TCEEEEH--------------
T ss_pred CCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCC------cceecch--------------
Confidence 999999999998 8999999999999999999988777666543322 1111110
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc-CCCCCCCEEEEecC
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD-WSVPTQPVYLWTLP 239 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~-~~~~~~d~~~~~~p 239 (569)
.+.+ .............++++++|+|||||||.||||.++|+++...+...... +++.++|++++..|
T Consensus 158 --------~~~~---~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p 226 (576)
T 3gqw_A 158 --------AWFK---ALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLP 226 (576)
T ss_dssp --------HHHH---TSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCC
T ss_pred --------hhhh---cccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCC
Confidence 0000 00111111123457899999999999999999999999999888776554 78999999999999
Q ss_pred chhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCC-CCCCCcCCCceEEE
Q 044926 240 MFHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD-KKPLKLAKPVHLVT 313 (569)
Q Consensus 240 l~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~-~~~~~~~~l~~~~~ 313 (569)
++|.+|+.. .+..+..|+++++.+. +++..+++.++++++|++.++|+++..+.+..... .....++++|.+++
T Consensus 227 ~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~ 306 (576)
T 3gqw_A 227 FYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGI 306 (576)
T ss_dssp TTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEE
T ss_pred ccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhc
Confidence 999999876 4556677777777653 58899999999999999999999999887664322 11222348999999
Q ss_pred eCCCCcHHHHHHHH-hc------CCeeeecccccccccceeecccccccccCcHHH-----------------Hhhhhcc
Q 044926 314 AGAPPPAAVLLRTE-SL------GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAE-----------------KAKLKAR 369 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 369 (569)
||+++++++.+++. .+ ++++++.||+||++..++.+....+........ ......+
T Consensus 307 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 386 (576)
T 3gqw_A 307 GAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVN 386 (576)
T ss_dssp CSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEB
T ss_pred cCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceee
Confidence 99999999999987 34 688999999999988877654433221110000 0011237
Q ss_pred cCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccC
Q 044926 370 QGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS 449 (569)
Q Consensus 370 ~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~ 449 (569)
+|.|.++. +++|+|+ +|.+++.| +.|||+|+|+.+++||+++++.+...+. +|||+|||+|++ +||.+++.||.
T Consensus 387 ~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGDl~~~-~dG~l~~~GR~ 460 (576)
T 3gqw_A 387 CGKALPEH-GIEIRNE-AGMPVAER--VVGHICISGPSLMSGYFGDQVSQDEIAA-TGWLDTGDLGYL-LDGYLYVTGRI 460 (576)
T ss_dssp CCEECTTC-EEEEECT-TSCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHH-HSCEEEEEEEEE-ETTEEEEEEET
T ss_pred cCCcCCCC-eEEEECC-CCCCCCCC--CeEEEEEeCccccccccCCccccccccC-CCeeeccceEEE-ECCEEEEEecC
Confidence 89999998 9999995 88899888 8999999999999999999987766555 899999999999 69999999999
Q ss_pred CCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccC-CCCccccEE
Q 044926 450 KDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL-PHYMVPKTV 528 (569)
Q Consensus 450 ~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~~ 528 (569)
||+||++|++|+|.+||++|.+||+|.+++|++..++. +..++++....... ...+++++.+++++ +.+++|..+
T Consensus 461 dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~p~~i 536 (576)
T 3gqw_A 461 KDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDE--ERRGQLIHALAARIQSEFGVTAAI 536 (576)
T ss_dssp TTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCch--hHHHHHHHHHHHHHHHHhCCceeE
Confidence 99999999999999999999999999998888877663 34555555543332 45578888998888 688999988
Q ss_pred EEec--ccCCCCCCcccHHHHHHHHHhcCCCCCcCccc
Q 044926 529 VFMD--ELPKTSTGKIQKFVLREIAENMGSSSSPLSRS 564 (569)
Q Consensus 529 ~~~~--~iP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~ 564 (569)
.+++ +||+|++||++|++|++++.+.........++
T Consensus 537 ~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~ 574 (576)
T 3gqw_A 537 DLLPPHSIPRTSSGKPARAEAKKRYQKAYAASLNVQES 574 (576)
T ss_dssp EEECSSCSCBCTTSSBCHHHHHHHHHHHHTCC------
T ss_pred EEECCCCcCcCCCccchHHHHHHHHHHHhhhccchhhh
Confidence 8887 89999999999999999999887666555544
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.8e-71 Score=633.31 Aligned_cols=495 Identities=20% Similarity=0.268 Sum_probs=417.2
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Q 044926 4 LKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 4 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
.|......+..|+.++|.++++++||++|+++.++++||+||+++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 454 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 454 LNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp TSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 34444455668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|+++||++|.++.+++.+++++++++++|++.+...... .... ....+.+.+.
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~---~~~~~~~~~~---------------- 590 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPY---TGTTLFIDDQ---------------- 590 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCC---CSEEEESSCG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCC---CCcEEEeccc----------------
Confidence 9999999999999999999999999999999999876432110 0110 1112221110
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhh
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHS 243 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~ 243 (569)
..+ .. ..........++++++|+|||||||.||||.++|+++.+. .+....++++.+|+++...|++|.
T Consensus 591 ----~~~----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd 659 (1304)
T 2vsq_A 591 ----TRF----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFD 659 (1304)
T ss_dssp ----GGG----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTST
T ss_pred ----ccc----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHH
Confidence 000 00 0011112356789999999999999999999999999865 555667889999999999999999
Q ss_pred hhhhHHHHHHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcH
Q 044926 244 NGWCFPWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPA 320 (569)
Q Consensus 244 ~g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~ 320 (569)
.+....+.+++.|+++++.+. .++..+++.|.++++|++.++|+++..+.+.. ...+ .++|.+++|||+++.
T Consensus 660 ~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~--~~lr~~~~gGe~l~~ 734 (1304)
T 2vsq_A 660 AFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWM--KGLRCILFGGERASV 734 (1304)
T ss_dssp HHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHH--HTCSEEEEESSCCCH
T ss_pred HHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcC--CCccEEEEecCCCCH
Confidence 888888999999999999864 68999999999999999999999999998642 1223 389999999999999
Q ss_pred HHHHHHHh-c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCce
Q 044926 321 AVLLRTES-L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL 398 (569)
Q Consensus 321 ~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~ 398 (569)
...+++.+ + +++++|.||+||++..++.+..... ........+|.|+++. .++|+|+ .+.+++.| +.
T Consensus 735 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~ 803 (1304)
T 2vsq_A 735 PHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AV 803 (1304)
T ss_dssp HHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CC
T ss_pred HHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--Cc
Confidence 99988874 4 5789999999999877665432210 0011235789999998 9999997 68888888 89
Q ss_pred eEEEEecCcccccccCCccccccccC------CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 399 GEIVLRGGCIMLGYLKDPIGTRKCMT------DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 399 Gel~v~~~~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
|||+|+|+.+++||+++|+.|..+|. +++||+|||+|++++||.++++||.||+||++|++|++.+||.+|.++
T Consensus 804 GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~ 883 (1304)
T 2vsq_A 804 GELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEY 883 (1304)
T ss_dssp EEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHS
T ss_pred eEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhC
Confidence 99999999999999999999988884 245999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHH
Q 044926 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 473 ~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~ 552 (569)
|+|.+++|++.+++..+..++++|+.... .+.++++++++++||.|++|..++++++||+|++||++|++|++...
T Consensus 884 p~V~~a~V~~~~~~~~~~~l~a~vv~~~~----~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 884 PGVKDAVVVADRHESGDASINAYLVNRTQ----LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp SSCCEEEEEEECCSSSCCEEEEEEECSSS----SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred CCCceEEEEEEecCCCCEEEEEEEeCCCC----CCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 99999999999888878889999987652 67889999999999999999999999999999999999999976443
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.4e-58 Score=479.76 Aligned_cols=405 Identities=19% Similarity=0.240 Sum_probs=313.9
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeCC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYNN---------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPAL 77 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~---------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~ 77 (569)
...+.+.+|+.++|+++++.+||++|+++.+ +++||+||.++++++|.+|++.|+ +||+|+|+++|++++
T Consensus 17 ~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~ 95 (480)
T 3t5a_A 17 RGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY 95 (480)
T ss_dssp -------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH
T ss_pred ccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH
Confidence 3445688999999999999999999999865 899999999999999999999996 999999999999999
Q ss_pred HHHHHHhhhccceEeeccC---CCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccc
Q 044926 78 YELHFAVPFAAAVLNTINT---RLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSS 154 (569)
Q Consensus 78 ~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (569)
++++|||+++|+++||+++ .++.+++.+++++++++++|++.+....+.+......... ...++.++...
T Consensus 96 ~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------ 168 (480)
T 3t5a_A 96 VVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES-PPSIIEVDLLD------ 168 (480)
T ss_dssp HHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------CCEEEEGGGSC------
T ss_pred HHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccccc-ccceeEecccc------
Confidence 9999999999999999999 7889999999999999999999987766554332211100 11222221110
Q ss_pred cCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCC----
Q 044926 155 QSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT---- 230 (569)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~---- 230 (569)
.............++++++|+|||||||.||||.++|+++..++......+.+..
T Consensus 169 ---------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~ 227 (480)
T 3t5a_A 169 ---------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIP 227 (480)
T ss_dssp ---------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCC
T ss_pred ---------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCC
Confidence 0000111112356779999999999999999999999999998888877777776
Q ss_pred --CCEEEEecCchhhhhhhH-HHHHHHhCceEEEeccC----CHHHHHHHHHHhCcceeechhHHHHHHHcCC----CCC
Q 044926 231 --QPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIRKF----DASIIFDLIRRHGVTHMCGAPVVLNMLSNYR----DPD 299 (569)
Q Consensus 231 --~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~----~~~ 299 (569)
+|++++.+|++|.+|+.. .+.+++.|+++++.++. ++..+++.++++++| +.++|+++..++... ...
T Consensus 228 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~ 306 (480)
T 3t5a_A 228 PPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMA 306 (480)
T ss_dssp CTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGT
T ss_pred CCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccc
Confidence 999999999999999765 67888899999988753 899999999999999 788898888776532 222
Q ss_pred CCCCCcCCCceEEEeCCCCcHHHHHHHH-hc------CCeeeecccccccccceeeccccccccc--CcHHHH-------
Q 044926 300 KKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL------GFKVSHGYGLTETGGIVVSCAWKRNWNL--LPAAEK------- 363 (569)
Q Consensus 300 ~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~------~~~i~~~YG~tE~~~~~~~~~~~~~~~~--~~~~~~------- 363 (569)
..+++ ++|.+++||+++++++.+++. .+ ++.+++.||+||+++.++.......... +.....
T Consensus 307 ~~~l~--~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 384 (480)
T 3t5a_A 307 GRDLG--NILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKP 384 (480)
T ss_dssp TCCCT--TCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCC
T ss_pred ccchh--hhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceee
Confidence 33444 999999999999999999987 44 2479999999999887776543221100 000000
Q ss_pred -----hhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccC-----------CCC
Q 044926 364 -----AKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT-----------DDG 427 (569)
Q Consensus 364 -----~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~ 427 (569)
.....++|.|.+ . +++|+|++++..++.| +.|||+|+|++++.||+++++.+...|. .++
T Consensus 385 ~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~ 460 (480)
T 3t5a_A 385 CAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGP 460 (480)
T ss_dssp CCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCC
T ss_pred cCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCC
Confidence 123457899999 6 9999999889999988 8999999999999999999999988884 467
Q ss_pred eeeecceEEEecCCcEEEecc
Q 044926 428 WFYTGDVGVMHSDGYLEIKDR 448 (569)
Q Consensus 428 ~~~TGD~~~~~~dg~l~~~GR 448 (569)
||+|||+|+++ ||+|++.||
T Consensus 461 w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 461 WLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp BEEEEEEEEEE-TTEEEECC-
T ss_pred eeeccceeeEE-CCEEEEeCC
Confidence 99999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.4e-53 Score=418.96 Aligned_cols=316 Identities=18% Similarity=0.156 Sum_probs=264.4
Q ss_pred CCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCCHH
Q 044926 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDAS 268 (569)
Q Consensus 189 ~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 268 (569)
.+++++|+|||||||.||||.+||+++...+......++++++|++++.+|++|.+|+...+.+++.|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 46899999999999999999999999999999998999999999999999999999999888899999999887542 1
Q ss_pred HHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCeeeecccccccccceee
Q 044926 269 IIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVS 348 (569)
Q Consensus 269 ~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 348 (569)
..+..|+++++|++.++|+++..+++.... ...++ ++|.+++||+++++++.++++++++++++.||+||+++.+..
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~--~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVD--RLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGG--GGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCC--cceEEEEcccCCCchheecccccCceEEeccccccccceeec
Confidence 235678899999999999999999987542 23444 999999999999999999999889999999999999877665
Q ss_pred cccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCe
Q 044926 349 CAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGW 428 (569)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 428 (569)
..... .....+|.+.+++ .+.+. +.|||+++|+.. .++|
T Consensus 191 ~~~~~-----------~~~g~~~~~~pgv-~~~~~-------------~~Gel~~~g~~~----------------~~g~ 229 (358)
T 4gs5_A 191 KALNG-----------PEASELYVFLPGI-QYGVD-------------ERGCLHISGAVT----------------NGQT 229 (358)
T ss_dssp EECSS-----------TTCCSCEEECTTC-EEEEC-------------TTSEEEEESGGG----------------TTCC
T ss_pred ccccc-----------cccceeeccCCCe-EEEec-------------CcCceEEecccc----------------cCcc
Confidence 43221 1123455555555 44432 348999887532 2789
Q ss_pred eeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHH---cCCCcceeEEE-ecCCCCCCceeEEEEEecCCCCC
Q 044926 429 FYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY---SNPAVNEAAVV-ARPDEFWGETPCAFVSLKEGSKS 504 (569)
Q Consensus 429 ~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~---~~~~i~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~ 504 (569)
|+|||+|++++|| +++.||.||+||++|++|+|.+||++|. +||+|.+++|+ +.+++.+|+.++++|+.....
T Consensus 230 ~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-- 306 (358)
T 4gs5_A 230 VQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-- 306 (358)
T ss_dssp EEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH--
T ss_pred eecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC--
Confidence 9999999999888 6667999999999999999999998774 58999998876 567777788888888765432
Q ss_pred CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 505 KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 505 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
...++|+++++++|+.|++|+.++++++||+|++||++|++|++++++.
T Consensus 307 -~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 307 -ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp -HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred -cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 4668899999999999999999999999999999999999999987654
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.6e-48 Score=395.67 Aligned_cols=326 Identities=19% Similarity=0.193 Sum_probs=265.3
Q ss_pred CCC-CCceEEEecCCCCCCCceEEEchHHHHHHHhhhh---ccCCCCCCCEEEEecCchhhhhh-hHHHHHHHhCceEEE
Q 044926 187 RTE-WDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL---SDWSVPTQPVYLWTLPMFHSNGW-CFPWAMAAVGGTNIC 261 (569)
Q Consensus 187 ~~~-~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl~~~~g~-~~~~~~~~~g~~~~~ 261 (569)
..+ +++++++|||||||.||+|.++|+++...+.... ..+++.++|++++..|+.|..+. ...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 344 7899999999999999999999999977665553 34588999999999998655544 456777889999998
Q ss_pred eccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeeccccc
Q 044926 262 IRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLT 340 (569)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~t 340 (569)
.+..++..+++.|+++++|++.++|+++..|++..........+.++|.+++||+++++++.++++ .+++++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 888899999999999999999999999999988754444443344999999999999999999998 4599999999999
Q ss_pred ccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccc
Q 044926 341 ETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420 (569)
Q Consensus 341 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 420 (569)
|+++.++..... .....+.+.++. .++|+|++++.+++.| +.|||+|+|. +.
T Consensus 242 E~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR 293 (436)
T ss_dssp GGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred hhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence 996553332211 011234455566 9999998899999988 8999999983 23
Q ss_pred cccCCCCeeeecceEEEecCC------c---EEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCce
Q 044926 421 KCMTDDGWFYTGDVGVMHSDG------Y---LEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGET 491 (569)
Q Consensus 421 ~~~~~~~~~~TGD~~~~~~dg------~---l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~ 491 (569)
..+. ++||+|||+|+++++| . +++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.
T Consensus 294 ~~~~-~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~ 372 (436)
T 3qov_A 294 EMMP-LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDE 372 (436)
T ss_dssp CSSC-CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEE
T ss_pred CCce-EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcE
Confidence 3343 8899999999999998 5 6999999999999999999999999999999999999999988777888
Q ss_pred eEEEEEecCCCCCCCC----HHHHHHHHhccCCCC-ccccEEEEec--ccCCCCCCcccHH
Q 044926 492 PCAFVSLKEGSKSKPT----EKEMIEYCRGRLPHY-MVPKTVVFMD--ELPKTSTGKIQKF 545 (569)
Q Consensus 492 ~~~~v~~~~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~~~~~~--~iP~t~~GKi~r~ 545 (569)
++++|++. +.. .+ .+++++.++++++.+ ++|..+.+++ +||+|+ ||++|.
T Consensus 373 l~a~v~~~-~~~--~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 373 MIVEVELS-DLS--TDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEC-TTC--CCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEc-Ccc--ccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 99999988 443 33 578999999999888 8999999998 999999 999885
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.1e-47 Score=392.84 Aligned_cols=334 Identities=18% Similarity=0.170 Sum_probs=271.2
Q ss_pred CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCc-hhhhhhhHHHHHHHhCceEEEe
Q 044926 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPM-FHSNGWCFPWAMAAVGGTNICI 262 (569)
Q Consensus 187 ~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 262 (569)
..++++++++|||||||.||+|.++|+++......... .+++.++|++++..|+ +|..++...+.++..|++++..
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 45678999999999999999999999998766544333 5788999999999998 5777777778888999999888
Q ss_pred ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccc
Q 044926 263 RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTE 341 (569)
Q Consensus 263 ~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE 341 (569)
+.+++..+++.|+++++|++.++|+++..|++.......+..+.++|.+++||+++++++.++++ .+|+++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 88899999999999999999999999999987654333333234899999999999999999997 56999999999999
Q ss_pred cccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccc
Q 044926 342 TGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 421 (569)
+++.+........ ....+.+.++. .++|+|++++.+++.| +.|||+++|. +..
T Consensus 249 ~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~~ 301 (443)
T 2y4o_A 249 VMGPGVACECVET------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------TKE 301 (443)
T ss_dssp TTEEEEEEECTTT------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SCS
T ss_pred hcCCeEEeccCCC------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------Ccc
Confidence 8543222111100 00123344555 8999998889999987 8999999982 333
Q ss_pred ccCCCCeeeecceEEEecC-CcE-----EEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEE
Q 044926 422 CMTDDGWFYTGDVGVMHSD-GYL-----EIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAF 495 (569)
Q Consensus 422 ~~~~~~~~~TGD~~~~~~d-g~l-----~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~ 495 (569)
.|+ ++||+|||+|+++++ |++ ++.||.+|+||++|++|+|.+||++|.++|+|.++++++.+++..++.++++
T Consensus 302 ~~p-~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~ 380 (443)
T 2y4o_A 302 AMP-VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA 380 (443)
T ss_dssp SSC-CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred cCh-hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence 444 789999999999999 986 8999999999999999999999999999999999999988776667788888
Q ss_pred EEecC--CCC-CCCCHHHHHHHHhccCCCC-ccccEEEEe--cccCCCCCCcccHHHHH
Q 044926 496 VSLKE--GSK-SKPTEKEMIEYCRGRLPHY-MVPKTVVFM--DELPKTSTGKIQKFVLR 548 (569)
Q Consensus 496 v~~~~--~~~-~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~iP~t~~GKi~r~~l~ 548 (569)
|+..+ +.. ...+.++++++|+++|+.+ .+|..+.++ ++||+|++||++|+..+
T Consensus 381 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 381 VELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 88875 321 1134578999999999876 489888888 59999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.4e-47 Score=391.39 Aligned_cols=331 Identities=15% Similarity=0.106 Sum_probs=270.4
Q ss_pred CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhh---ccCCCCCCCEEEEecCc-hhhhhhhHHHHHHHhCceEEEe
Q 044926 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL---SDWSVPTQPVYLWTLPM-FHSNGWCFPWAMAAVGGTNICI 262 (569)
Q Consensus 187 ~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 262 (569)
..++++++++|||||||.||+|.++|+++........ ..++++++|++++..|+ +|..++...+.++..|++++..
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4567899999999999999999999999876654433 35788999999999998 6788877778888999999888
Q ss_pred ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccc
Q 044926 263 RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTE 341 (569)
Q Consensus 263 ~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE 341 (569)
+.++++.+++.|+++++|++.++|+++..|++.......+....++|.+++||+++++++.++++ .+|+++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 88899999999999999999999999999987653333332234899999999999999999997 56999999999999
Q ss_pred cccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccc
Q 044926 342 TGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 421 (569)
+++.+........ ....+.+.++. .++|+|+++|.+++.| +.|||+++|. +..
T Consensus 247 ~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t~~ 299 (437)
T 2y27_A 247 VMGPGVASECVET------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------TKE 299 (437)
T ss_dssp TTEEEEEECCTTT------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SCS
T ss_pred hcCCeeEEecCCC------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------CcC
Confidence 8443222111100 01233344555 9999998889999987 8999999982 333
Q ss_pred ccCCCCeeeecceEEEec-CCcE-----EEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEE
Q 044926 422 CMTDDGWFYTGDVGVMHS-DGYL-----EIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAF 495 (569)
Q Consensus 422 ~~~~~~~~~TGD~~~~~~-dg~l-----~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~ 495 (569)
.|+ ++||+|||+|++++ +|++ ++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++
T Consensus 300 ~~~-~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~ 378 (437)
T 2y27_A 300 ALP-IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLN 378 (437)
T ss_dssp SSC-CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEE
T ss_pred Cch-hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEE
Confidence 444 78999999999998 6985 8999999999999999999999999999999999999888776667888999
Q ss_pred EEecCCCCCC-CCHHHHHHHHhccCCCC-ccccEEEEe--cccCCCCCCcccHHH
Q 044926 496 VSLKEGSKSK-PTEKEMIEYCRGRLPHY-MVPKTVVFM--DELPKTSTGKIQKFV 546 (569)
Q Consensus 496 v~~~~~~~~~-~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~iP~t~~GKi~r~~ 546 (569)
|++.++.... .+.++++++|+++|+.+ .+|..+.++ ++||+|+ ||++|+.
T Consensus 379 v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 379 VEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp ECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 8887654311 24578999999999887 589888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=2.2e-29 Score=250.82 Aligned_cols=236 Identities=15% Similarity=0.091 Sum_probs=178.5
Q ss_pred CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhh---hccCCCCCCCEEEEecCc-hhhhhhhHHHHHHHhCceEEEe
Q 044926 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNT---LSDWSVPTQPVYLWTLPM-FHSNGWCFPWAMAAVGGTNICI 262 (569)
Q Consensus 187 ~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~---~~~~~~~~~d~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 262 (569)
..++++++++|||||||.||+|.++|+++.....+. ...+++..+|++++..|+ +|..++...+.++..|+ .++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467789999999999999999999999998887743 355678999999999999 99999988888888888 6666
Q ss_pred ccCCHH-----------------------HHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCc
Q 044926 263 RKFDAS-----------------------IIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPP 319 (569)
Q Consensus 263 ~~~~~~-----------------------~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~ 319 (569)
..+++. .+++.|+++++|++.++|+++..|++........ +.++|.+++||++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM--KQSLAQITLGGTELN 244 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH--HHHCSEEEEESSCCC
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc--cCCeeEEEECCccCC
Confidence 667777 8888999999999999999999998874322222 338999999999999
Q ss_pred HHHHHHHH-hc--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcc------cccceeeEEeCCCCCcc
Q 044926 320 AAVLLRTE-SL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVK------TTALTEVDVLDPKSGVS 390 (569)
Q Consensus 320 ~~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~i~d~~~~~~ 390 (569)
+++++++. +. ++++++.||+||+++++..+.. .++|.+ .+++ .++|+|++++++
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~ 307 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQT 307 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSB
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcC
Confidence 99999998 54 8999999999999876654321 136777 7776 999999989999
Q ss_pred cCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecC--C-------cEEEeccCCCeEEeCce
Q 044926 391 AKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD--G-------YLEIKDRSKDVIISGGE 458 (569)
Q Consensus 391 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d--g-------~l~~~GR~~~~i~~~G~ 458 (569)
++.| +.|||+|++.. ...+ -.+|+|||++...+. | .+..++|.++..++.|.
T Consensus 308 vp~G--~~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 308 VEYG--ERGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CCTT--CEEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCCC--CceEEEEEEcC------------cccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9988 89999999732 1111 225999999988654 2 24556777777666653
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.50 E-value=1.8e-14 Score=114.71 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=72.7
Q ss_pred ccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC--CCCHHHHHHHHhccCC-CCc
Q 044926 447 DRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS--KPTEKEMIEYCRGRLP-HYM 523 (569)
Q Consensus 447 GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~l~~~l~~~l~-~~~ 523 (569)
||.+|+|+++|.+++|.+||++|.++|+|.++++++.+++.+++.+++++++ ++... ..+.+++.+.+++++. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777777889999988 55321 0133455555555543 234
Q ss_pred cccEEEEec--ccCCCCCCcccHH
Q 044926 524 VPKTVVFMD--ELPKTSTGKIQKF 545 (569)
Q Consensus 524 ~p~~~~~~~--~iP~t~~GKi~r~ 545 (569)
++..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 455788887 89999 9999873
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.47 E-value=6e-14 Score=111.99 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=72.8
Q ss_pred ccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCC-CCHHHHHHHHhccCCC-Ccc
Q 044926 447 DRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK-PTEKEMIEYCRGRLPH-YMV 524 (569)
Q Consensus 447 GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~l~~~l~~-~~~ 524 (569)
.|.||+|+++|.+|+|.+||++|.+||+|.++++++.+++.+++.+.++|+..++.... ...+++.+.+++++.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 38999999999999999999999999999999999999988888999999888765421 1224455555555432 234
Q ss_pred ccEEEEe--cccCCCCCCcccH
Q 044926 525 PKTVVFM--DELPKTSTGKIQK 544 (569)
Q Consensus 525 p~~~~~~--~~iP~t~~GKi~r 544 (569)
+..+.++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 5556666 489999 799987
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.78 E-value=4.3e-08 Score=100.00 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=53.4
Q ss_pred CceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEec----CCcEEEeccCCCeEEeCceeeeHHHHHHHHHc
Q 044926 396 STLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHS----DGYLEIKDRSKDVIISGGENLSSVEVESVLYS 471 (569)
Q Consensus 396 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~ 471 (569)
|+.+||++++.+ |.| .|++||++++.. .+++.|.||.++++.+.|++++..+||++|.+
T Consensus 384 G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 384 GCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp TCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHH
T ss_pred CceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHH
Confidence 488999999742 222 399999999875 36799999999999999999999999999985
Q ss_pred CC------C--cceeEEEec
Q 044926 472 NP------A--VNEAAVVAR 483 (569)
Q Consensus 472 ~~------~--i~~~~v~~~ 483 (569)
.- + |.+..+...
T Consensus 447 a~~~l~~~g~~l~eft~~~~ 466 (581)
T 4eql_A 447 AKLVLESSGLDLKDFTSYAD 466 (581)
T ss_dssp C--------------CEEEE
T ss_pred HHHhhhhcCCEEEEEEEecC
Confidence 32 2 556665543
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.75 E-value=7.1e-08 Score=98.50 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=62.2
Q ss_pred ceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEec----CCcEEEeccCCCeEEeCceeeeHHHHHHHHHc-
Q 044926 397 TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHS----DGYLEIKDRSKDVIISGGENLSSVEVESVLYS- 471 (569)
Q Consensus 397 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~- 471 (569)
+.+||++++.+ |+| .|++||++++.. .+++.+.||.++++.+.|+++++.+||++|.+
T Consensus 397 ~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a 459 (609)
T 4b2g_A 397 KEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNA 459 (609)
T ss_dssp CEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred CeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHH
Confidence 88999998742 333 399999999874 47899999999999999999999999999884
Q ss_pred -----CC--CcceeEEEecCCCCCCceeEEEEEec
Q 044926 472 -----NP--AVNEAAVVARPDEFWGETPCAFVSLK 499 (569)
Q Consensus 472 -----~~--~i~~~~v~~~~~~~~~~~~~~~v~~~ 499 (569)
.. .|.+..+........+ .-+++.++.
T Consensus 460 ~~~l~~~g~~l~eft~~~d~~~~p~-Hyv~~wEl~ 493 (609)
T 4b2g_A 460 SKLLREVNTSVVEYTSFADTKTIPG-HYVIYWELL 493 (609)
T ss_dssp HHGGGGTTEEEEEEEEEEECSSSSC-EEEEEEEEE
T ss_pred HHhhhccCCeEEEEEEecCCCCCCC-cEEEEEEEe
Confidence 22 3567666544333223 344455554
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.68 E-value=3e-07 Score=93.56 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=62.7
Q ss_pred CceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecC----CcEEEeccCCCeEEeCceeeeHHHHHHHHHc
Q 044926 396 STLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD----GYLEIKDRSKDVIISGGENLSSVEVESVLYS 471 (569)
Q Consensus 396 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d----g~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~ 471 (569)
|+.+||++++.+ |.| .|++||++++... .++.|.||.++++.+.|++++..+||++|.+
T Consensus 391 G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 391 GEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp TCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred CCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 388999999742 222 3999999998742 5789999999999999999999999999885
Q ss_pred ------CC--CcceeEEEecCCCCCCceeEEEEEec
Q 044926 472 ------NP--AVNEAAVVARPDEFWGETPCAFVSLK 499 (569)
Q Consensus 472 ------~~--~i~~~~v~~~~~~~~~~~~~~~v~~~ 499 (569)
.. .|.+..+........+ .-+++.+..
T Consensus 454 a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~wE~~ 488 (581)
T 4epl_A 454 AAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFWEIS 488 (581)
T ss_dssp HHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEEEES
T ss_pred HHHhhcccCCeEEEEEEecCCCCCCC-cEEEEEeec
Confidence 22 4667776654332223 344445654
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.30 E-value=1.6 Score=43.21 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=74.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--chHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN--VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
-.+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+.+++++. .+.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 468999999888888888878899999999988875 34445566888899999887755 478899999999999999
Q ss_pred EEccccHHHHHHHH
Q 044926 116 FVDFHSRALVREAV 129 (569)
Q Consensus 116 i~~~~~~~~~~~~~ 129 (569)
+..+.....+.+..
T Consensus 187 ~~~Ps~~~~l~~~~ 200 (437)
T 2y27_A 187 MVTPSYMLSIADEI 200 (437)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 99988877666554
No 43
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.07 E-value=1.6 Score=43.24 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=75.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--chHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN--VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
-.+|.+.+...+..++..+...++.++|++....+- ....+..+++++..|+.+++.++ ...+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 468999999988888888888899999999998874 34455567888899999887754 477889999999999999
Q ss_pred EEccccHHHHHHHHh
Q 044926 116 FVDFHSRALVREAVS 130 (569)
Q Consensus 116 i~~~~~~~~~~~~~~ 130 (569)
+..+.....+.+...
T Consensus 183 ~~~P~~~~~l~~~~~ 197 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQ 197 (436)
T ss_dssp ECCHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHH
Confidence 999988777666543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.99 E-value=1.8 Score=43.00 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=74.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--chHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN--VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
-.+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+..++++. ...+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 368999999888888888878899999999988875 34445567888889999888765 478889999999999999
Q ss_pred EEccccHHHHHHHH
Q 044926 116 FVDFHSRALVREAV 129 (569)
Q Consensus 116 i~~~~~~~~~~~~~ 129 (569)
+..+.....+.+..
T Consensus 189 ~~~Ps~~~~l~~~~ 202 (443)
T 2y4o_A 189 LVTPSYMLNLIDEM 202 (443)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 99988777665543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=80.42 E-value=21 Score=35.81 Aligned_cols=99 Identities=9% Similarity=0.093 Sum_probs=73.1
Q ss_pred cCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH-HHHHHHHhhhccceEeeccC
Q 044926 27 YGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA-LYELHFAVPFAAAVLNTINT 96 (569)
Q Consensus 27 ~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~ 96 (569)
.++.+|++. ++-.+|.+.+...+..+... .++.++|++...+|-.-. .+..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 356676654 22478999888777665544 478899999888876422 2334677888899888765
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccccHHHHHHHH
Q 044926 97 RLDARTVSLLLQHCQSKLVFVDFHSRALVREAV 129 (569)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (569)
..+.+.+...+++.++..++..+.....+.+..
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 269 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQQG 269 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcC
Confidence 578999999999999999999988777665543
No 46
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=80.04 E-value=31 Score=34.99 Aligned_cols=99 Identities=9% Similarity=-0.032 Sum_probs=72.5
Q ss_pred cCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH--HH-HHHHhhhccceEeec
Q 044926 27 YGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPAL--YE-LHFAVPFAAAVLNTI 94 (569)
Q Consensus 27 ~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~~~v~l 94 (569)
.|+.+|++. ++-.+|.+.+...+...... .++.++|++....|-+-.+ .. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 356666654 22479999888777665543 3778999988888765333 32 478888899988866
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHH
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAV 129 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (569)
+...++.+...+++.++..++..+.....+.+..
T Consensus 257 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 257 -PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp -SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc
Confidence 4578889999999999999999988777665544
No 47
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=75.30 E-value=8.6 Score=36.83 Aligned_cols=86 Identities=8% Similarity=-0.155 Sum_probs=62.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--chHHHHHHHHhhhccceEeeccCCCCHH--------------
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN--VPALYELHFAVPFAAAVLNTINTRLDAR-------------- 101 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 101 (569)
..+|.+.+...+..++..+...|+.++|++..+++- ..--+...+++...|+.+++. ..++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 468999998888877777777899999999998876 222334445558889855543 33444
Q ss_pred ---------HHHHHHhhcCCeEEEEccccHHHH
Q 044926 102 ---------TVSLLLQHCQSKLVFVDFHSRALV 125 (569)
Q Consensus 102 ---------~l~~~l~~~~~~~ii~~~~~~~~~ 125 (569)
.+...+++.++.++++.+.....+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666789999999999987765543
No 48
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=75.16 E-value=9.8 Score=38.86 Aligned_cols=97 Identities=9% Similarity=0.001 Sum_probs=68.4
Q ss_pred CceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CC
Q 044926 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FD 266 (569)
Q Consensus 191 ~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~ 266 (569)
.++++.+..+.++ ..+|.+.+...+..++.. .++.++|++....+-... .+...++++..|+..+.+++ ..
T Consensus 36 ~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~ 110 (550)
T 3rix_A 36 VPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYN 110 (550)
T ss_dssp STTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCC
T ss_pred CceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCC
Confidence 4555533333333 368999987766665554 489999999988885432 22345677778888887754 78
Q ss_pred HHHHHHHHHHhCcceeechhHHHHHH
Q 044926 267 ASIIFDLIRRHGVTHMCGAPVVLNML 292 (569)
Q Consensus 267 ~~~~~~~l~~~~~t~~~~~P~~l~~l 292 (569)
.+.+...++..++..++.....+..+
T Consensus 111 ~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 111 ERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp HHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred HHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 89999999999999999887655544
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=73.28 E-value=22 Score=36.10 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=71.5
Q ss_pred CCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH---HHHHhhhccceEeecc
Q 044926 28 GDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE---LHFAVPFAAAVLNTIN 95 (569)
Q Consensus 28 p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l~ 95 (569)
++.+|++. ++-.+|.+.+...+...+..+ ++.++|++...+|-...+-. .+++++..|+..+..
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~- 265 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA- 265 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC-
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh---CCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC-
Confidence 45666654 224799999888777665543 78899999988776443322 367888889888866
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHHHHH
Q 044926 96 TRLDARTVSLLLQHCQSKLVFVDFHSRALVREA 128 (569)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (569)
+......+...+++.++..+...+.....+.+.
T Consensus 266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 266 PNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence 456888889999999999999988776655444
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=72.62 E-value=27 Score=35.14 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=64.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHH--HHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY--ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
-.+|.+.+...+..++..+ ++.++|++...+|-.-.+- ..+++++ .|+..+.+ +......+...+++.++..+
T Consensus 188 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 4799999887777665554 7889999998888753332 2345555 88887766 56889999999999999999
Q ss_pred EEccccHHHHHH
Q 044926 116 FVDFHSRALVRE 127 (569)
Q Consensus 116 i~~~~~~~~~~~ 127 (569)
...+.....+..
T Consensus 263 ~~~P~~~~~l~~ 274 (517)
T 3r44_A 263 GAVPAILNFMRQ 274 (517)
T ss_dssp EECHHHHHHHHH
T ss_pred EeHHHHHHHHHh
Confidence 999887766544
No 51
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=70.97 E-value=20 Score=36.52 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=70.3
Q ss_pred CCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH--HHHHHHHhhhccceEeeccCC
Q 044926 29 DSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA--LYELHFAVPFAAAVLNTINTR 97 (569)
Q Consensus 29 ~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~ 97 (569)
+.+|++. ++-.+|.+.+...+......+...++.++|++..+.|-.-. +...+++++ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 6667664 22579999888776665544333578899998888776433 233456767 898888775 5
Q ss_pred CCHHHHHHHHhhcCCeEEEEccccHHHHHH
Q 044926 98 LDARTVSLLLQHCQSKLVFVDFHSRALVRE 127 (569)
Q Consensus 98 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (569)
.+.+.+...+++.++..++..+.....+.+
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 788999999999999999998877665544
No 52
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=70.67 E-value=25 Score=35.71 Aligned_cols=102 Identities=10% Similarity=-0.038 Sum_probs=69.5
Q ss_pred CCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-
Q 044926 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK- 264 (569)
Q Consensus 189 ~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~- 264 (569)
++.+|++....+..+ -..-.+|.+.+...+..++. ..++.++|++....+-... .....++++..|+..+.+++
T Consensus 33 p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~ 110 (549)
T 3g7s_A 33 GEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPINPM 110 (549)
T ss_dssp TTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEccCCC
Confidence 446776654322111 11246788888766655554 3589999999988876432 22345677778888887764
Q ss_pred CCHHHHHHHHHHhCcceeechhHHHHHH
Q 044926 265 FDASIIFDLIRRHGVTHMCGAPVVLNML 292 (569)
Q Consensus 265 ~~~~~~~~~l~~~~~t~~~~~P~~l~~l 292 (569)
...+.+...++..++..++..+.....+
T Consensus 111 ~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 111 YKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 7788999999999999999887665544
No 53
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=69.16 E-value=32 Score=34.84 Aligned_cols=85 Identities=8% Similarity=-0.048 Sum_probs=62.7
Q ss_pred eEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCccee
Q 044926 207 GVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHM 282 (569)
Q Consensus 207 ~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~ 282 (569)
...+|.+.+...+..++. ..++.++|++....+....+ ....++++..|+..+.+++ ...+.+...++..++..+
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 123 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEE
Confidence 457899988766655544 45889999999888854322 2334666778888777754 778999999999999999
Q ss_pred echhHHHHHH
Q 044926 283 CGAPVVLNML 292 (569)
Q Consensus 283 ~~~P~~l~~l 292 (569)
+..+.....+
T Consensus 124 i~~~~~~~~~ 133 (541)
T 1v25_A 124 LFDPNLLPLV 133 (541)
T ss_dssp EECGGGHHHH
T ss_pred EEChhHHHHH
Confidence 9887655443
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=69.05 E-value=19 Score=36.54 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=67.6
Q ss_pred CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc
Q 044926 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK 264 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~ 264 (569)
.++.+|++....| -.+|++.+...+..++. ..++.++|++....+-... .....++++..|+..+.+++
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 3556776643222 35899998776655554 3589999999988886432 23345677778888877754
Q ss_pred -CCHHHHHHHHHHhCcceeechhHHHHH
Q 044926 265 -FDASIIFDLIRRHGVTHMCGAPVVLNM 291 (569)
Q Consensus 265 -~~~~~~~~~l~~~~~t~~~~~P~~l~~ 291 (569)
...+.+...++..++..++..+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 788899999999999999887654443
No 55
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=69.02 E-value=20 Score=35.95 Aligned_cols=93 Identities=14% Similarity=-0.003 Sum_probs=67.6
Q ss_pred CCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-
Q 044926 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK- 264 (569)
Q Consensus 189 ~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~- 264 (569)
++.+|++. .+..+|++.+...+..++.. .++.++|++....+-... -....++++..|+..+.+++
T Consensus 20 pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~ 89 (509)
T 3ivr_A 20 PDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVNYR 89 (509)
T ss_dssp TTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecCCC
Confidence 45667654 12568999987766655544 488999999988876432 22345667778888887764
Q ss_pred CCHHHHHHHHHHhCcceeechhHHHHH
Q 044926 265 FDASIIFDLIRRHGVTHMCGAPVVLNM 291 (569)
Q Consensus 265 ~~~~~~~~~l~~~~~t~~~~~P~~l~~ 291 (569)
...+.+...++..++..++..+.....
T Consensus 90 ~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 90 LNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp SCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCHHHHHHHHHhcCceEEEECcchhhh
Confidence 788999999999999999987765544
No 56
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=66.03 E-value=1.1e+02 Score=31.33 Aligned_cols=88 Identities=13% Similarity=0.010 Sum_probs=66.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH--HHH-HHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA--LYE-LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKL 114 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~--~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (569)
..+|.+.+...+......+ ++.++|++..+.+-... +.. .+++++..|+..+..+ ......+...+++.+++.
T Consensus 202 V~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred eehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcE
Confidence 5799998887776655544 77899999988885433 332 4677888888887664 467888889999999999
Q ss_pred EEEccccHHHHHHHH
Q 044926 115 VFVDFHSRALVREAV 129 (569)
Q Consensus 115 ii~~~~~~~~~~~~~ 129 (569)
+...+.....+.+..
T Consensus 278 ~~~~P~~~~~l~~~~ 292 (617)
T 3rg2_A 278 TALVPPAVSLWLQAL 292 (617)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EEcchHHHHHHHHhh
Confidence 999988777665554
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=65.59 E-value=41 Score=33.66 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=60.8
Q ss_pred EEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceee
Q 044926 208 VVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMC 283 (569)
Q Consensus 208 v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~ 283 (569)
..+|++.+...+..++. ..++.++|++....+-...+ ....++++..|+..+.+++ ...+.+...+++.++..++
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 106 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV 106 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEE
Confidence 56899998766655544 35889999999888864332 3345677778888887765 6788999999999999988
Q ss_pred c--hhHHHHHH
Q 044926 284 G--APVVLNML 292 (569)
Q Consensus 284 ~--~P~~l~~l 292 (569)
. .+.....+
T Consensus 107 ~~~~~~~~~~~ 117 (504)
T 1t5h_X 107 IAVGRQVADAI 117 (504)
T ss_dssp ECC--CHHHHH
T ss_pred Eecchhhhhhh
Confidence 8 65554444
No 58
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=64.64 E-value=21 Score=34.01 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=63.0
Q ss_pred cCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch-HHHHHHHHhhhccceEeeccC
Q 044926 27 YGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVP-ALYELHFAVPFAAAVLNTINT 96 (569)
Q Consensus 27 ~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~ 96 (569)
+.|.+|++. ++-.+|.+.+...+..++.. .++.++|++..++|-.- -.+..++..+..|+..+..++
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 456666653 22579999988777666554 37899999998887642 223344555667777776666
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccccHHHHH
Q 044926 97 RLDARTVSLLLQHCQSKLVFVDFHSRALVR 126 (569)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (569)
.... ...+++.++..+...+.....+.
T Consensus 112 ~~~~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 112 TANP---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp CSCT---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred cccH---HHHHHHhCCeEEEcChHHHHHhh
Confidence 5433 44678889999998877655543
No 59
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=63.50 E-value=26 Score=35.21 Aligned_cols=85 Identities=8% Similarity=0.003 Sum_probs=64.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH-HHHHHHHhhhccceEeeccCC--CCHHHHHHHHhhcCCeE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA-LYELHFAVPFAAAVLNTINTR--LDARTVSLLLQHCQSKL 114 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (569)
-.+|.+.+...+...... .++.++|++..+.|-+-. .+..+++++..|+..+.++.. ..+..+...+++.++..
T Consensus 162 v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 468998888766655443 478899999988876432 234577888889988877653 57788999999999999
Q ss_pred EEEccccHHHH
Q 044926 115 VFVDFHSRALV 125 (569)
Q Consensus 115 ii~~~~~~~~~ 125 (569)
++..+.....+
T Consensus 239 ~~~~P~~~~~l 249 (512)
T 3fce_A 239 WTSTPSFAEMC 249 (512)
T ss_dssp EEECHHHHHHH
T ss_pred EEecHHHHHHH
Confidence 99988766543
No 60
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=63.48 E-value=51 Score=33.63 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=69.0
Q ss_pred CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cC-CCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEec
Q 044926 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DW-SVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIR 263 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~-~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~ 263 (569)
.++.+|++.... .| ....+|.+.+...+..++. .. ++.++|++....+-...+ ....++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 445677665421 11 2457899988766655443 33 889999999888864332 233567777888887775
Q ss_pred c-CCHHHHHHHHHHhCcceeechhHHHHHH
Q 044926 264 K-FDASIIFDLIRRHGVTHMCGAPVVLNML 292 (569)
Q Consensus 264 ~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l 292 (569)
. ...+.+...++..++..++..+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 4 6788999999999999998877655544
No 61
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=63.26 E-value=36 Score=34.17 Aligned_cols=86 Identities=6% Similarity=-0.030 Sum_probs=64.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH-HHHHHHHhhhccceEeeccCC--CCHHHHHHHHhhcCCeE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA-LYELHFAVPFAAAVLNTINTR--LDARTVSLLLQHCQSKL 114 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (569)
-.+|.+.+...+..++.. .++.++|++..+.|-+-. .+..+++++..|+..+.++.. ..+..+...+++.++..
T Consensus 161 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 468998887776655443 477899999988876533 334568888899988877553 56788899999999999
Q ss_pred EEEccccHHHHH
Q 044926 115 VFVDFHSRALVR 126 (569)
Q Consensus 115 ii~~~~~~~~~~ 126 (569)
++..+.....+.
T Consensus 238 ~~~~P~~~~~l~ 249 (511)
T 3e7w_A 238 WTSTPSFVQMCL 249 (511)
T ss_dssp EEECHHHHHHHH
T ss_pred EEecHHHHHHHH
Confidence 999887665543
No 62
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=62.29 E-value=44 Score=33.05 Aligned_cols=106 Identities=6% Similarity=-0.019 Sum_probs=71.7
Q ss_pred CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc
Q 044926 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK 264 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~ 264 (569)
.++.+|++.........-....+|.+.+...+..++.. .+. ++|++....+-...+ ....++++..|+..+.++.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCC
Confidence 34567776544211111134678999987766655544 354 899998888754332 2335677778888877753
Q ss_pred ----CCHHHHHHHHHHhCcceeechhHHHHHHHcC
Q 044926 265 ----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNY 295 (569)
Q Consensus 265 ----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~ 295 (569)
...+.+...++..++..++..+.....+.+.
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 4568899999999999999988877776654
No 63
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=62.26 E-value=43 Score=34.14 Aligned_cols=84 Identities=7% Similarity=0.009 Sum_probs=62.1
Q ss_pred EEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceee
Q 044926 208 VVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMC 283 (569)
Q Consensus 208 v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~ 283 (569)
..+|.+.+...+..++. ..++.++|++....+-...+ ....++++..|+..+.+++ ...+.+...++..++..++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 36899988766655544 35889999998888864322 2335667778888877764 6788999999999999999
Q ss_pred chhHHHHHH
Q 044926 284 GAPVVLNML 292 (569)
Q Consensus 284 ~~P~~l~~l 292 (569)
..+.....+
T Consensus 142 ~~~~~~~~~ 150 (563)
T 1amu_A 142 TQKHLVHLI 150 (563)
T ss_dssp ECGGGHHHH
T ss_pred EcCchhhhh
Confidence 887655543
No 64
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=59.78 E-value=43 Score=33.47 Aligned_cols=78 Identities=8% Similarity=-0.047 Sum_probs=58.7
Q ss_pred EEchHHHHHHHhhhhcc---CCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeec
Q 044926 209 VHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCG 284 (569)
Q Consensus 209 ~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~ 284 (569)
.+|.+.+...+..++.. .++.++|++....+-... .....++++..|+..+.++. ...+.+...++..++..+++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 58999987766555543 589999999988886432 22345677778888777764 77889999999999999988
Q ss_pred hhH
Q 044926 285 APV 287 (569)
Q Consensus 285 ~P~ 287 (569)
.+.
T Consensus 107 ~~~ 109 (503)
T 4fuq_A 107 DPS 109 (503)
T ss_dssp CGG
T ss_pred Cch
Confidence 764
No 65
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=59.28 E-value=30 Score=34.90 Aligned_cols=81 Identities=6% Similarity=-0.089 Sum_probs=60.3
Q ss_pred EEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeec
Q 044926 209 VHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCG 284 (569)
Q Consensus 209 ~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~ 284 (569)
.+|++.+...+..++. ..++.++|++....+-...+ ....++++..|+..+.++. ..++.+...+++.++..++.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 126 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA 126 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence 5899988766655554 45889999999888864332 2335677778888877754 77889999999999999988
Q ss_pred hhHHHH
Q 044926 285 APVVLN 290 (569)
Q Consensus 285 ~P~~l~ 290 (569)
.+....
T Consensus 127 ~~~~~~ 132 (529)
T 2v7b_A 127 SGALVQ 132 (529)
T ss_dssp EGGGHH
T ss_pred chhhhh
Confidence 766543
No 66
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=58.80 E-value=70 Score=32.62 Aligned_cols=99 Identities=2% Similarity=-0.044 Sum_probs=71.4
Q ss_pred cCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHH--HHHHHhhhccceEeecc
Q 044926 27 YGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY--ELHFAVPFAAAVLNTIN 95 (569)
Q Consensus 27 ~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~ 95 (569)
.++.+|++. ++-.+|.+.+...+...+.. .++.++|++..++|-.-.+- ..+++++..|+..+.++
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 356666654 22479999998887766554 47889999998888764433 33678888899888776
Q ss_pred CCC---CHHHHHHHHhhcCCeEEEEccccHHHHHHH
Q 044926 96 TRL---DARTVSLLLQHCQSKLVFVDFHSRALVREA 128 (569)
Q Consensus 96 ~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (569)
+.. .+..+...+++.++..+.........+.+.
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 277 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR 277 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHH
Confidence 542 567788889999999998877666555443
No 67
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=58.45 E-value=46 Score=34.10 Aligned_cols=94 Identities=7% Similarity=0.057 Sum_probs=66.4
Q ss_pred CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc
Q 044926 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK 264 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~ 264 (569)
.++.+|++..... | ....+|.+.+...+..++. ..++.++|++...+|-...+ +...++++..|+..+.++.
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 4567777764321 1 2467899998766655554 45899999999888854332 2335666778888777754
Q ss_pred -CCHHHHHHHHHHhCcceeechh
Q 044926 265 -FDASIIFDLIRRHGVTHMCGAP 286 (569)
Q Consensus 265 -~~~~~~~~~l~~~~~t~~~~~P 286 (569)
...+.+...+++.++..+++.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 7889999999999999988754
No 68
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=57.58 E-value=63 Score=33.63 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=66.1
Q ss_pred CCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEec-c
Q 044926 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIR-K 264 (569)
Q Consensus 189 ~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~-~ 264 (569)
++.+|++... ..+| ....+|.+.+...+..++. ..++.++|++...+|....+ ....++++..|+..+.++ .
T Consensus 90 pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCCC
Confidence 4566766432 2122 3457899998776655554 35899999999988865433 233566777888877775 4
Q ss_pred CCHHHHHHHHHHhCcceeechh
Q 044926 265 FDASIIFDLIRRHGVTHMCGAP 286 (569)
Q Consensus 265 ~~~~~~~~~l~~~~~t~~~~~P 286 (569)
+.++.+...++..++..+++..
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 7899999999999999888753
No 69
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=54.98 E-value=69 Score=30.01 Aligned_cols=80 Identities=10% Similarity=-0.009 Sum_probs=50.8
Q ss_pred eeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEE
Q 044926 39 TYTWSDTHHRCLQLASSLLSIG-ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117 (569)
Q Consensus 39 ~~Ty~el~~~v~~~A~~L~~~g-~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 117 (569)
+-+|++-. +..+...+.+.| +++|+.|.+....+-.-..+-++|...|..++.+-|...+......++..+++++++
T Consensus 47 tGSfK~R~--a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~ 124 (334)
T 3tbh_A 47 MASVKDRL--GFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILT 124 (334)
T ss_dssp TSBTHHHH--HHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred ccCcHHHH--HHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEE
Confidence 44565532 222223344455 478887645555555566666777778887766656555555667788999999999
Q ss_pred ccc
Q 044926 118 DFH 120 (569)
Q Consensus 118 ~~~ 120 (569)
+..
T Consensus 125 ~~~ 127 (334)
T 3tbh_A 125 PAA 127 (334)
T ss_dssp CGG
T ss_pred CCC
Confidence 764
No 70
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=53.63 E-value=92 Score=32.43 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=66.4
Q ss_pred CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhh---c-cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEec
Q 044926 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL---S-DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIR 263 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~---~-~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~ 263 (569)
.++.+|++.... .+| ....+|.+.+...+..++ . ..++.++|++...+|..... ....++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 345677765422 122 235689988876554443 3 56889999999999865432 233466677788777765
Q ss_pred -cCCHHHHHHHHHHhCcceeechhH
Q 044926 264 -KFDASIIFDLIRRHGVTHMCGAPV 287 (569)
Q Consensus 264 -~~~~~~~~~~l~~~~~t~~~~~P~ 287 (569)
.+.++.+...|+..++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 588999999999999999887543
No 71
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=52.90 E-value=64 Score=32.82 Aligned_cols=79 Identities=10% Similarity=-0.038 Sum_probs=59.1
Q ss_pred EEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeec
Q 044926 209 VHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCG 284 (569)
Q Consensus 209 ~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~ 284 (569)
.+|.+.+...+..++. ..++.++|++....+-...+ ....++++..|+..+.++. ...+.+...++..++..++.
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~ 178 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVT 178 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEe
Confidence 5899998766655554 45899999999888764332 2335677778888877754 68899999999999999887
Q ss_pred hhHH
Q 044926 285 APVV 288 (569)
Q Consensus 285 ~P~~ 288 (569)
....
T Consensus 179 ~~~~ 182 (570)
T 4gr5_A 179 SRPL 182 (570)
T ss_dssp CTTT
T ss_pred cchh
Confidence 6543
No 72
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=48.69 E-value=62 Score=28.05 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=52.3
Q ss_pred CEEEEec-Cc-hhhhhhhHHHHHH-HhCceEEEec-cCCHHHHHHHHHHhCcceeec------hhHH--HHHHHcCCCCC
Q 044926 232 PVYLWTL-PM-FHSNGWCFPWAMA-AVGGTNICIR-KFDASIIFDLIRRHGVTHMCG------APVV--LNMLSNYRDPD 299 (569)
Q Consensus 232 d~~~~~~-pl-~~~~g~~~~~~~~-~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~------~P~~--l~~l~~~~~~~ 299 (569)
.+++... +- .|..|....-..+ ..|-.++... ...++.+.+.+.+++++.+.. ++.+ +..+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 3444444 33 6777776644444 4555555554 468899999999999997766 2222 23333322222
Q ss_pred CCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 300 KKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 300 ~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
... . . -.+++||..++++..+.
T Consensus 173 ~~~-~--~-v~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 173 KLR-D--S-VKCMFGGAPVSDKWIEE 194 (215)
T ss_dssp TCG-G--G-SEEEEESSSCCHHHHHH
T ss_pred CCC-C--C-CEEEEECCCCCHHHHHH
Confidence 110 0 1 24789999999765543
No 73
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=47.88 E-value=51 Score=23.20 Aligned_cols=48 Identities=25% Similarity=0.229 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCC
Q 044926 462 SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH 521 (569)
Q Consensus 462 ~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~ 521 (569)
..++++.|.++|+|.+|..+..+.+ ..+.|.. .+.+++.+.+.+.+..
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-------~d~~~l~~~i~~~l~~ 62 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-------DTLKDLDQFITEKIRK 62 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-------SSHHHHHHHHHTTGGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-------CCHHHHHHHHHHHhcc
Confidence 4789999999999999998876543 3444444 3567888888766543
No 74
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=47.84 E-value=64 Score=35.56 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc
Q 044926 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK 264 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~ 264 (569)
.++.+|++...+| ..+|.+.+...+..++. ..++.++|++....|-... -+...++++..|+..+.+++
T Consensus 74 ~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 4567777653222 45899988766655554 3589999999988886532 23345677788888888764
Q ss_pred -CCHHHHHHHHHHhCcceeechhHHH
Q 044926 265 -FDASIIFDLIRRHGVTHMCGAPVVL 289 (569)
Q Consensus 265 -~~~~~~~~~l~~~~~t~~~~~P~~l 289 (569)
..++.+...++..++..++..+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 7889999999999999998876543
No 75
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=46.41 E-value=91 Score=31.08 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=68.9
Q ss_pred cCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--HHHHHHHHhhhccceEeecc
Q 044926 27 YGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVP--ALYELHFAVPFAAAVLNTIN 95 (569)
Q Consensus 27 ~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~ 95 (569)
.++.+|++. ++-.+|.+.+...+..++..+ ++.++|++...++-.- .++..+++.+..|+..+..
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~- 228 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL- 228 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence 356666653 124799999988887776655 7788998888777532 2334567888889988866
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHHHH
Q 044926 96 TRLDARTVSLLLQHCQSKLVFVDFHSRALVRE 127 (569)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (569)
+....+.+...+ +.++..++..+.....+.+
T Consensus 229 ~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 229 GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 567777777777 6799999998877665544
No 76
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=39.28 E-value=1.1e+02 Score=28.65 Aligned_cols=81 Identities=9% Similarity=0.055 Sum_probs=53.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIG-ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVF 116 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g-~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (569)
.+=||++=- ....+. .+.+.| +++|.+..+....+-.-..+-++|..+|.-+..+-|...+......++.+++++++
T Consensus 61 ptGSfK~Rg-A~~~i~-~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~ 138 (344)
T 3vc3_A 61 PTASIADRP-AYAMIT-DAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELIL 138 (344)
T ss_dssp TTSBTTHHH-HHHHHH-HHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCCCcHHHH-HHHHHH-HHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEE
Confidence 345665421 122333 334444 57777666666666666667788888898777776766666677889999999999
Q ss_pred Eccc
Q 044926 117 VDFH 120 (569)
Q Consensus 117 ~~~~ 120 (569)
++..
T Consensus 139 v~~~ 142 (344)
T 3vc3_A 139 TDPA 142 (344)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 9754
No 77
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=38.73 E-value=1.4e+02 Score=30.80 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=68.1
Q ss_pred cCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH-HHHHHHHhhhccceEeecc-
Q 044926 27 YGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA-LYELHFAVPFAAAVLNTIN- 95 (569)
Q Consensus 27 ~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~- 95 (569)
.|+.+|++. ++..+|.+.+...+.. ....++.++|++..+.+-+-+ .+..+++.+..|+.++..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 356676654 2246888877543322 223478899999998876433 3344677888888877663
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHHHH
Q 044926 96 TRLDARTVSLLLQHCQSKLVFVDFHSRALVRE 127 (569)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (569)
....++.+...+++.++..++..+.....+.+
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 269 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLVD 269 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHh
Confidence 35688999999999999999998887766554
No 78
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=38.32 E-value=74 Score=31.84 Aligned_cols=78 Identities=8% Similarity=-0.103 Sum_probs=56.9
Q ss_pred EEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceee
Q 044926 208 VVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMC 283 (569)
Q Consensus 208 v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~ 283 (569)
-.+|.+.+...+..++. ..++.++|++....+-... -+...++++..|+..+.++. ...+.+...++..++..++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 35799998776655554 4588999998887775432 22335667778888777754 7889999999999999887
Q ss_pred chh
Q 044926 284 GAP 286 (569)
Q Consensus 284 ~~P 286 (569)
...
T Consensus 107 ~~~ 109 (521)
T 3l8c_A 107 AIE 109 (521)
T ss_dssp ESS
T ss_pred ecC
Confidence 643
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=37.45 E-value=1.2e+02 Score=30.74 Aligned_cols=85 Identities=6% Similarity=-0.117 Sum_probs=61.1
Q ss_pred eEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CC-------HHHHHHHHH
Q 044926 207 GVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FD-------ASIIFDLIR 275 (569)
Q Consensus 207 ~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~l~ 275 (569)
.-.+|.+.+...+..++. ..++.++|++....+-...+ ....++++..|+..+.++. .. .+.+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 357899998776665554 35889999999888864322 2345677778888877754 33 578889999
Q ss_pred HhCcceeechhHHHHHH
Q 044926 276 RHGVTHMCGAPVVLNML 292 (569)
Q Consensus 276 ~~~~t~~~~~P~~l~~l 292 (569)
..++..++........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999998876654443
No 80
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=36.16 E-value=67 Score=22.39 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCC
Q 044926 462 SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLP 520 (569)
Q Consensus 462 ~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~ 520 (569)
..++.+.|.++|+|.+|..+..+.+ +.+.+.. .+.+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~-------~d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA-------DSMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC-------SSHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE-------CCHHHHHHHHHHHhc
Confidence 4789999999999999988866443 3344443 355778777765554
No 81
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=35.38 E-value=1.1e+02 Score=28.52 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=50.7
Q ss_pred eeeHHHHHHHHHHH--H-HHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 39 TYTWSDTHHRCLQL--A-SSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 39 ~~Ty~el~~~v~~~--A-~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
.+++.+........ | ..|...++++|++|+|+...+.-.+++++|....|+.++-++. +.++ ..+..+.+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEE
Confidence 46666643332222 2 3344568999999999998888888888877776776665543 3333 455667888888
Q ss_pred EEcc
Q 044926 116 FVDF 119 (569)
Q Consensus 116 i~~~ 119 (569)
|...
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 7643
No 82
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=34.88 E-value=2e+02 Score=29.00 Aligned_cols=96 Identities=13% Similarity=-0.102 Sum_probs=62.7
Q ss_pred CCCCceEEEecCCCCCCC--ceEEEchHHHHHHHhhhhcc---CCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEe
Q 044926 188 TEWDPIVLNYTSGTTMSP--KGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICI 262 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~p--k~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~ 262 (569)
.++.+|++... +..+.. ..-.+|++.+...+..++.. .++ ++|++....+-...+ +...++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEec
Confidence 34466666543 222222 23578999987666555543 466 699998888864332 23356677788887777
Q ss_pred cc-CCHHHHHHHHHHhCcceeechh
Q 044926 263 RK-FDASIIFDLIRRHGVTHMCGAP 286 (569)
Q Consensus 263 ~~-~~~~~~~~~l~~~~~t~~~~~P 286 (569)
+. ...+.+...++..++..++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 54 7888999999999999877653
No 83
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=32.04 E-value=75 Score=22.83 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCC
Q 044926 462 SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHY 522 (569)
Q Consensus 462 ~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~ 522 (569)
..++.+.|.++|+|.+|..+..+.+ ..+.|..+ +.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~~-------d~~~l~~~l~~~l~~~ 63 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRLK-------DVEELDDVVTQGILSL 63 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEES-------SGGGHHHHCCCCCTTS
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEEC-------CHHHHHHHHHHhcccC
Confidence 5789999999999999999876543 44444442 4456777776666443
No 84
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=28.75 E-value=2.2e+02 Score=26.29 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=41.0
Q ss_pred HHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccc
Q 044926 56 LLSIG-ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120 (569)
Q Consensus 56 L~~~g-~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (569)
+.+.| +++|....+....+-.-..+-++|.+.|..++.+-|...+..-...++..++++++++.+
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34455 355643333344455555555667788887766555544455567788999999999864
No 85
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=28.61 E-value=2.1e+02 Score=27.86 Aligned_cols=64 Identities=20% Similarity=0.088 Sum_probs=43.7
Q ss_pred HHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEcc
Q 044926 56 LLSIGI-SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119 (569)
Q Consensus 56 L~~~g~-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 119 (569)
..+.|. ++|....+....+-.-..+-++|...|.-++.+-|..........++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 345554 6675444444455555666677888898777666665555667788999999999974
No 86
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.33 E-value=1.6e+02 Score=27.29 Aligned_cols=59 Identities=7% Similarity=0.103 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEcCCch------HHHHHHHH-hhhccceEeeccCC------------CCHHHHHHHHhhcCCeEEEEc
Q 044926 60 GISRGHVVSVVSPNVP------ALYELHFA-VPFAAAVLNTINTR------------LDARTVSLLLQHCQSKLVFVD 118 (569)
Q Consensus 60 g~~~gd~V~i~~~n~~------~~~~~~lA-~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~ 118 (569)
-+++||+|+|++|.+. +-+-.-.. +-..|..++.-+.- ..++++...+.+-.+++|+|.
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 5789999999998742 22222122 22347666544321 124556677777778888885
No 87
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=28.30 E-value=2.4e+02 Score=25.83 Aligned_cols=80 Identities=8% Similarity=-0.006 Sum_probs=47.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGI-SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVF 116 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (569)
..-+|++-.. ..+...+.+.|. ++|+.|.. ...+-.-..+-++|...|..++.+-|...+..-...++..++++++
T Consensus 42 ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 118 (313)
T 2q3b_A 42 PANSVKDRIG--VAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELIL 118 (313)
T ss_dssp TTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCCcHHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 3456665332 223333444443 56666655 3334444444556678888766655554444556678899999999
Q ss_pred Eccc
Q 044926 117 VDFH 120 (569)
Q Consensus 117 ~~~~ 120 (569)
++..
T Consensus 119 ~~~~ 122 (313)
T 2q3b_A 119 TPGA 122 (313)
T ss_dssp ECGG
T ss_pred eCCC
Confidence 9863
No 88
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=27.80 E-value=1.2e+02 Score=28.68 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=33.6
Q ss_pred HcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCC-----CCHHHHHHHHhhcC--CeEEEEc
Q 044926 58 SIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTR-----LDARTVSLLLQHCQ--SKLVFVD 118 (569)
Q Consensus 58 ~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~ii~~ 118 (569)
..++++||.|.+-.+....+. -++...|+.++.++.+ .+.+.+...+..-+ .++|+..
T Consensus 72 ~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 72 LKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 335678888777666554433 3345667766655432 36677777663333 5666643
No 89
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=27.17 E-value=2.5e+02 Score=25.58 Aligned_cols=79 Identities=11% Similarity=0.000 Sum_probs=46.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEE
Q 044926 39 TYTWSDTHHRCLQLASSLLSIGI-SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117 (569)
Q Consensus 39 ~~Ty~el~~~v~~~A~~L~~~g~-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 117 (569)
.-+|++-.. ..+...+.+.|. ++|+.|.. ...+-.-..+-++|...|..++.+-|...+..-...++..+++++++
T Consensus 41 tgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~ 117 (308)
T 2egu_A 41 GSSVKDRIA--LAMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLT 117 (308)
T ss_dssp TSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEE
T ss_pred CCChHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence 455664432 222233344453 56665554 44444444555666778887666555444445566788999999999
Q ss_pred ccc
Q 044926 118 DFH 120 (569)
Q Consensus 118 ~~~ 120 (569)
+..
T Consensus 118 ~~~ 120 (308)
T 2egu_A 118 PGA 120 (308)
T ss_dssp CGG
T ss_pred CCC
Confidence 864
No 90
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=26.79 E-value=1.2e+02 Score=22.10 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=33.5
Q ss_pred CCCchHHHHHHHHHHcC--------------CCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 044926 12 TPLTPLVFLERAATVYG--------------DSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSP 72 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p--------------~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~ 72 (569)
...|+.++++.....+| ..+++...++.+.+ +.-++.||.|+++-+
T Consensus 35 ~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~---------------~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 35 EGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW---------------DEELKDGDVVGVFPP 94 (98)
T ss_dssp TTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT---------------TCBCCTTCEEEEESC
T ss_pred CCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC---------------CCCCCCCCEEEEECC
Confidence 35799999999988876 34555556665541 456899999999865
No 91
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.27 E-value=1.9e+02 Score=27.02 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEcCCchH------HHHHHHHhh-hccceEeeccCC------------CCHHHHHHHHhhcCCeEEEEc
Q 044926 60 GISRGHVVSVVSPNVPA------LYELHFAVP-FAAAVLNTINTR------------LDARTVSLLLQHCQSKLVFVD 118 (569)
Q Consensus 60 g~~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~ 118 (569)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-... ..+++|...+.+-++++|+|.
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 47899999999998732 222222222 357776643211 124456666666777788775
No 92
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=25.61 E-value=2.5e+02 Score=26.13 Aligned_cols=80 Identities=9% Similarity=0.026 Sum_probs=46.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIG-ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVF 116 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g-~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (569)
.+-+|++... ..+...+.+.| +++|+.|..... +-.-..+-++|...|..++.+-|...+......++..++++++
T Consensus 53 ptGSfKdR~a--~~~l~~a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~ 129 (343)
T 2pqm_A 53 PMSSVKDRVG--FNIVYQAIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 129 (343)
T ss_dssp TTSBTHHHHH--HHHHHHHHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCCChHHHHH--HHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 3455655422 22223333445 367776666543 3333444455667887766655554445556678889999999
Q ss_pred Eccc
Q 044926 117 VDFH 120 (569)
Q Consensus 117 ~~~~ 120 (569)
++..
T Consensus 130 ~~~~ 133 (343)
T 2pqm_A 130 TEGK 133 (343)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 9863
No 93
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=25.60 E-value=2.3e+02 Score=26.53 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHHH--cCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccc
Q 044926 55 SLLS--IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120 (569)
Q Consensus 55 ~L~~--~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (569)
.|.+ .++++|++|+|......-.+++.+|-...|+.++.++. +.+++ ..+++.+++.++...+
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETTS
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEeccc
Confidence 3455 68899999999998777888888776543876554443 33333 3456788988876543
No 94
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=25.27 E-value=2.2e+02 Score=26.48 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=3.9
Q ss_pred eEEEchHH
Q 044926 207 GVVHCHRG 214 (569)
Q Consensus 207 ~v~~t~~~ 214 (569)
|+++..+.
T Consensus 211 G~~~~~~~ 218 (384)
T 1eg5_A 211 GITYIRKG 218 (384)
T ss_dssp EEEEECTT
T ss_pred EEEEEcCC
Confidence 55555443
No 95
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=24.85 E-value=1.6e+02 Score=27.11 Aligned_cols=88 Identities=8% Similarity=0.092 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHH---HHHHHhhcCCeEEE
Q 044926 42 WSDTHHRCLQLASSLLSI--GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDART---VSLLLQHCQSKLVF 116 (569)
Q Consensus 42 y~el~~~v~~~A~~L~~~--g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~---l~~~l~~~~~~~ii 116 (569)
++++.++...+-..+++. .++...+..+...+...+++--+++-..|..-+--...-++.+ +...+++.++++||
T Consensus 172 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If 251 (313)
T 1toa_A 172 YQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIF 251 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444555555555554442 3333345556677788999999998776643221122344554 45556778999999
Q ss_pred EccccHHHHHHHH
Q 044926 117 VDFHSRALVREAV 129 (569)
Q Consensus 117 ~~~~~~~~~~~~~ 129 (569)
++........+.+
T Consensus 252 ~e~~~~~~~~~~l 264 (313)
T 1toa_A 252 IESSIPHKNVEAL 264 (313)
T ss_dssp EETTSCTHHHHHH
T ss_pred EeCCCChHHHHHH
Confidence 9887655544443
No 96
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=24.57 E-value=4e+02 Score=24.16 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=40.5
Q ss_pred HHHHcC-CCCCC--EEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccc
Q 044926 55 SLLSIG-ISRGH--VVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120 (569)
Q Consensus 55 ~L~~~g-~~~gd--~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (569)
.+.+.| +++|+ .|.. ...+-.-..+-++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 50 ~a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 50 DAEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334444 45666 4444 33344444445666788987666555444455566788899999999865
No 97
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=24.54 E-value=1.2e+02 Score=27.41 Aligned_cols=87 Identities=8% Similarity=0.024 Sum_probs=54.3
Q ss_pred eHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHH---HHHHHhhcCCeEE
Q 044926 41 TWSDTHHRCLQLASSLLSI--GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDART---VSLLLQHCQSKLV 115 (569)
Q Consensus 41 Ty~el~~~v~~~A~~L~~~--g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~---l~~~l~~~~~~~i 115 (569)
.++.+.++...+-..+++. .+..+.++.+...+...+++--+++-..|..-+.-...-++.+ +...+++.+.++|
T Consensus 137 N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~i 216 (282)
T 3mfq_A 137 NTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAI 216 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3455556666666666543 3334567777778888888888888777643221111234554 4556677899999
Q ss_pred EEccccHHHHHH
Q 044926 116 FVDFHSRALVRE 127 (569)
Q Consensus 116 i~~~~~~~~~~~ 127 (569)
|++....+...+
T Consensus 217 f~e~~~~~~~~~ 228 (282)
T 3mfq_A 217 FTESTTNPERMK 228 (282)
T ss_dssp ECBTTSCTHHHH
T ss_pred EEeCCCChHHHH
Confidence 998766554433
No 98
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=24.51 E-value=1.9e+02 Score=26.62 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=48.8
Q ss_pred eeeHHHHHHHHHH--HH-HHHHHcCCCCCCEEEEEc-CCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeE
Q 044926 39 TYTWSDTHHRCLQ--LA-SSLLSIGISRGHVVSVVS-PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKL 114 (569)
Q Consensus 39 ~~Ty~el~~~v~~--~A-~~L~~~g~~~gd~V~i~~-~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (569)
.+++.+..-.... .| ..|...++++|++|+|.. ....-.+++.+|- ..|+.++.+. +.++ ...+++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4677665433222 12 334456899999999996 6677777777775 5688665443 4444 55677788887
Q ss_pred EEEcc
Q 044926 115 VFVDF 119 (569)
Q Consensus 115 ii~~~ 119 (569)
++...
T Consensus 200 ~i~~~ 204 (321)
T 3tqh_A 200 CINYH 204 (321)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77543
No 99
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=24.42 E-value=2.1e+02 Score=27.23 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=35.5
Q ss_pred cCCCCCCEEEEEcCCchH------HHHHHHHhh-hccceEeeccCC------------CCHHHHHHHHhhcCCeEEEEc
Q 044926 59 IGISRGHVVSVVSPNVPA------LYELHFAVP-FAAAVLNTINTR------------LDARTVSLLLQHCQSKLVFVD 118 (569)
Q Consensus 59 ~g~~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~ 118 (569)
.-+++||+|+|++|.+.- -+-.-...+ ..|..++.-+.. ..+++|...+.+-++++|+|.
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 367999999999998632 222222222 357776644221 124455666666677777775
No 100
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=24.00 E-value=2e+02 Score=26.73 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=47.0
Q ss_pred eeeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 39 TYTWSDTHHRCLQ---LASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 39 ~~Ty~el~~~v~~---~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
.+++.+..-.... .-..|.+.++++|++|+|......-.+++.+|- ..|+.++.+..+.... ..+.+.+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~~~---~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEHKK---QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSSTTH---HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHH---HHHHhcCCCee
Confidence 4666665421111 123455568999999999988777777777775 4688766655444332 24456788887
Q ss_pred E
Q 044926 116 F 116 (569)
Q Consensus 116 i 116 (569)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 101
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.75 E-value=2.2e+02 Score=24.18 Aligned_cols=55 Identities=4% Similarity=-0.016 Sum_probs=40.9
Q ss_pred EEEEEcCC----chHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccc
Q 044926 66 VVSVVSPN----VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120 (569)
Q Consensus 66 ~V~i~~~n----~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (569)
+|.+.+.. .+-..+.-..+-..|.-++.+..+.+.+++...+.+.++++|..+..
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 55555443 23344444445577999999999999999999999999999998753
No 102
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=23.60 E-value=1.6e+02 Score=27.65 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=38.7
Q ss_pred CCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHH
Q 044926 64 GHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA 123 (569)
Q Consensus 64 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 123 (569)
.+.|.-. ..+-.-..+-++|.+.|.-++.+-|...+......++..++++++++....+
T Consensus 76 ~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~~ 134 (346)
T 3l6b_A 76 PKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDES 134 (346)
T ss_dssp CSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHHH
T ss_pred CCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 3444333 3344445555677888887666656555556677889999999999876543
No 103
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=23.29 E-value=2.4e+02 Score=26.32 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=50.3
Q ss_pred eeeHHHHHHHH--HHHHH-HHHH-cCCCCCCEEEEEcC-CchHHHHHHHHhhhccce-EeeccCCCCHHHHHHHHhhcCC
Q 044926 39 TYTWSDTHHRC--LQLAS-SLLS-IGISRGHVVSVVSP-NVPALYELHFAVPFAAAV-LNTINTRLDARTVSLLLQHCQS 112 (569)
Q Consensus 39 ~~Ty~el~~~v--~~~A~-~L~~-~g~~~gd~V~i~~~-n~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~ 112 (569)
.+++.+..... -..|. .|.+ .++++|++|+|... ...-.+++.+|- ..|+. ++..+.....++....+++.++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46776643321 12232 3434 48899999999987 667777777775 46874 4444454445555566778899
Q ss_pred eEEEEc
Q 044926 113 KLVFVD 118 (569)
Q Consensus 113 ~~ii~~ 118 (569)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 888754
No 104
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=22.86 E-value=1.2e+02 Score=27.69 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccC--CCCHHH---HHHHHhhcCCeE
Q 044926 42 WSDTHHRCLQLASSLLSI--GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINT--RLDART---VSLLLQHCQSKL 114 (569)
Q Consensus 42 y~el~~~v~~~A~~L~~~--g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~---l~~~l~~~~~~~ 114 (569)
++++.++...+-..+++. .+..+.+..+...+...+++--+++-..+.. -+++ .-++.+ +...+++.+.++
T Consensus 158 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 235 (294)
T 3hh8_A 158 LKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYIW--EINTEEEGTPDQISSLIEKLKVIKPSA 235 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEEEEE--SSCCSCCCCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCceeecc--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 455555555665555553 3332335556667788999999998766532 2233 234444 556667789999
Q ss_pred EEEccccHHHH
Q 044926 115 VFVDFHSRALV 125 (569)
Q Consensus 115 ii~~~~~~~~~ 125 (569)
||++.......
T Consensus 236 if~e~~~~~~~ 246 (294)
T 3hh8_A 236 LFVESSVDRRP 246 (294)
T ss_dssp EEEETTSCSHH
T ss_pred EEEeCCCCcHH
Confidence 99987665443
No 105
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=22.67 E-value=2.2e+02 Score=26.50 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEcCCch------HHHHHHHHhh-hccceEeeccCC------------CCHHHHHHHHhhcCCeEEEEc
Q 044926 60 GISRGHVVSVVSPNVP------ALYELHFAVP-FAAAVLNTINTR------------LDARTVSLLLQHCQSKLVFVD 118 (569)
Q Consensus 60 g~~~gd~V~i~~~n~~------~~~~~~lA~~-~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~ 118 (569)
-+++||+|+|++|.+. +-+-.-...+ ..|..++.-+.. ..+++|...+.+-++++|+|.
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 85 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTT 85 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 4789999999998854 2222222223 357766644321 124456666666777888875
No 106
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=22.65 E-value=1.5e+02 Score=19.89 Aligned_cols=27 Identities=0% Similarity=-0.052 Sum_probs=11.7
Q ss_pred HHHHHHHcCCCCeEEeCCeeeeHHHHH
Q 044926 20 LERAATVYGDSPSIIYNNITYTWSDTH 46 (569)
Q Consensus 20 l~~~a~~~p~~~al~~~~~~~Ty~el~ 46 (569)
|......+|+...++..++..+|+.+.
T Consensus 36 l~~~~~~~~~~~V~I~aD~~~~y~~vv 62 (74)
T 2jwk_A 36 SRQEFDKDNNTLFLVGGAKEVPYEEVI 62 (74)
T ss_dssp HHHHHHHCTTCCEEEEECTTSCHHHHH
T ss_pred HHHHHhhCCCceEEEEcCCCCCHHHHH
Confidence 333333444444444444444444443
No 107
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=21.47 E-value=2.3e+02 Score=26.25 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=49.1
Q ss_pred eeeHHHHHHHHH---HHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 39 TYTWSDTHHRCL---QLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 39 ~~Ty~el~~~v~---~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
.+++.+...... -.-..|...++++|++|+|......-.+++.+|- ..|+.++.++. +.+++ ..+++.+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEE
Confidence 467766442211 1123445558899999999988777777777775 45886655533 34443 35677888888
Q ss_pred EEcc
Q 044926 116 FVDF 119 (569)
Q Consensus 116 i~~~ 119 (569)
+...
T Consensus 215 i~~~ 218 (340)
T 3s2e_A 215 VNAR 218 (340)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7643
No 108
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=21.44 E-value=1.6e+02 Score=27.06 Aligned_cols=85 Identities=8% Similarity=0.010 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccC--CCCHH---HHHHHHhhcCCeE
Q 044926 42 WSDTHHRCLQLASSLLSI--GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINT--RLDAR---TVSLLLQHCQSKL 114 (569)
Q Consensus 42 y~el~~~v~~~A~~L~~~--g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~---~l~~~l~~~~~~~ 114 (569)
++.+.++...+-..+++. .+....+..+...+...+++--+++-..+.. .+.+ .-++. ++...+++.+.++
T Consensus 165 a~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~~~--~i~~~~ePs~~~l~~l~~~ik~~~v~~ 242 (307)
T 3ujp_A 165 AAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYMW--PINAEQQFTPKQVQTVIEEVKTNNVPT 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEEEE--SSCCSSCCCHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEEee--ccCCCCCCCHHHHHHHHHHHHhcCCcE
Confidence 455555666666666553 3333445666677788888888888766432 3333 33444 4556677889999
Q ss_pred EEEccccHHHHHHH
Q 044926 115 VFVDFHSRALVREA 128 (569)
Q Consensus 115 ii~~~~~~~~~~~~ 128 (569)
||+.........+.
T Consensus 243 If~e~~~~~k~~~~ 256 (307)
T 3ujp_A 243 IFCESTVSDKGQKQ 256 (307)
T ss_dssp EEEETTSCSHHHHH
T ss_pred EEEeCCCChHHHHH
Confidence 99987765544333
No 109
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=21.35 E-value=3.1e+02 Score=25.84 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCC----CCHHHHHHHHhhc--CCeEEEEc
Q 044926 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTR----LDARTVSLLLQHC--QSKLVFVD 118 (569)
Q Consensus 60 g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~ 118 (569)
++++||.|.+..+....+.. ++...|+.++.++.+ ...+.+...+... ++++|++.
T Consensus 68 ~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 68 GVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred CCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 45678877777666554432 223356665555432 4567777777653 46666654
No 110
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=20.99 E-value=1.9e+02 Score=26.85 Aligned_cols=86 Identities=8% Similarity=0.009 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccC--CCCHHH---HHHHHhhcCCeE
Q 044926 42 WSDTHHRCLQLASSLLSI--GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINT--RLDART---VSLLLQHCQSKL 114 (569)
Q Consensus 42 y~el~~~v~~~A~~L~~~--g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~---l~~~l~~~~~~~ 114 (569)
++++.++...+-..+++. .+....+..+...+...++.--|++-..|. ..+++ .-++.+ +...+++.+.++
T Consensus 179 a~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~~yGL~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~ 256 (321)
T 1xvl_A 179 AAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYM--WPINAEQQFTPKQVQTVIEEVKTNNVPT 256 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHHHTTCEEEEE--ESSSSSCSCCHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHHHCCCeEEEe--eccCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 445555555555555542 332234455666778888888888877663 23333 334444 455567789999
Q ss_pred EEEccccHHHHHHHH
Q 044926 115 VFVDFHSRALVREAV 129 (569)
Q Consensus 115 ii~~~~~~~~~~~~~ 129 (569)
||++........+.+
T Consensus 257 If~e~~~~~~~~~~i 271 (321)
T 1xvl_A 257 IFCESTVSDKGQKQV 271 (321)
T ss_dssp EEEETTSCSHHHHHH
T ss_pred EEEeCCCChHHHHHH
Confidence 999887765544444
No 111
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=20.96 E-value=2.2e+02 Score=26.56 Aligned_cols=76 Identities=9% Similarity=-0.046 Sum_probs=47.6
Q ss_pred eeeHHHHHHHHH--HHH-HHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc-eEeeccCCCCHHHHHHHHhhcCCeE
Q 044926 39 TYTWSDTHHRCL--QLA-SSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA-VLNTINTRLDARTVSLLLQHCQSKL 114 (569)
Q Consensus 39 ~~Ty~el~~~v~--~~A-~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (569)
.+++.+..--.. ..| ..|...++++|++|+|+..-.+-.+++.+|- ..|+ .++.++. +.++ ..++++.+++.
T Consensus 139 ~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~ 214 (352)
T 3fpc_A 139 EIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGS--RKHC-CDIALEYGATD 214 (352)
T ss_dssp TSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECC--CHHH-HHHHHHHTCCE
T ss_pred CCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECC--CHHH-HHHHHHhCCce
Confidence 466666532211 112 2345568999999999987777777777774 5687 4554543 3333 34566788888
Q ss_pred EEEc
Q 044926 115 VFVD 118 (569)
Q Consensus 115 ii~~ 118 (569)
++..
T Consensus 215 vi~~ 218 (352)
T 3fpc_A 215 IINY 218 (352)
T ss_dssp EECG
T ss_pred EEcC
Confidence 7754
No 112
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=20.80 E-value=4.2e+02 Score=24.02 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=46.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEE
Q 044926 39 TYTWSDTHHRCLQLASSLLSIG-ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117 (569)
Q Consensus 39 ~~Ty~el~~~v~~~A~~L~~~g-~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 117 (569)
+-+|++... ..+...+.+.| +++|+.|..... +-.-..+-++|.+.|..++.+-|...+......++..+++++++
T Consensus 37 tGSfK~R~a--~~~i~~a~~~g~~~~g~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 113 (303)
T 2v03_A 37 AGSVKDRAA--LSMIVEAEKRGEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV 113 (303)
T ss_dssp TSBTHHHHH--HHHHHHHHHTTCCCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred CCCcHHHHH--HHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence 455555322 22223334444 356776666653 33334444556788887766656544455567788999999999
Q ss_pred cc
Q 044926 118 DF 119 (569)
Q Consensus 118 ~~ 119 (569)
+.
T Consensus 114 ~~ 115 (303)
T 2v03_A 114 TK 115 (303)
T ss_dssp CT
T ss_pred CC
Confidence 86
No 113
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.69 E-value=2.9e+02 Score=26.74 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=35.6
Q ss_pred EEEcCCchHHHH-HHHHhhhccceEeeccCCCCHH--HHHHHHhhcCCeEEEEccccHHHHHHH
Q 044926 68 SVVSPNVPALYE-LHFAVPFAAAVLNTINTRLDAR--TVSLLLQHCQSKLVFVDFHSRALVREA 128 (569)
Q Consensus 68 ~i~~~n~~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (569)
++++.++.+.+. ++.++...|-.++..++.+... .+...+...+.+.++++....+.+.+.
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~a 163 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHA 163 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHh
Confidence 455556555544 4455666676656556666432 222366778888888876644444444
No 114
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=20.48 E-value=1.9e+02 Score=20.04 Aligned_cols=46 Identities=7% Similarity=-0.043 Sum_probs=30.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
..+.+.+|.+ .+.+.+..+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4566766654 334445677888888888877776666666677753
No 115
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=20.07 E-value=2.6e+02 Score=26.33 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=39.9
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc-eEeeccCCCCHHHHHHHHhhcCCeEEEE
Q 044926 55 SLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA-VLNTINTRLDARTVSLLLQHCQSKLVFV 117 (569)
Q Consensus 55 ~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 117 (569)
.|...++++|++|+|......-.+++.+|- ..|+ .++.++. +.+. ..++++.+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 345558999999999988667777777765 5687 5554443 3333 34566678887765
Done!