BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044927
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 151/293 (51%), Gaps = 13/293 (4%)
Query: 181 NLSNNIV----SVERIRQFMHLPPEPPAIIEETKPPASWPS-HGRIELEDLKVRYRPNTP 235
N+ N IV S +R+ + ++ E PAI EE + P+ G + E+++ RY NT
Sbjct: 301 NILNFIVRASASAKRVLEVLN---EKPAI-EEADNALALPNVEGSVSFENVEFRYFENTD 356
Query: 236 LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLR 295
VL G+ + K L++ + RL++PE GR+ +D LD+ ++ LKDLR
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 296 TKLSIIPQEPTLFRGSVRTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
+S +PQE LF G+++ NL +D+EI EA + Q+ I LP DS V
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
G N+S GQ+Q + R L+K+ ++L+LD+ T+S+D T+ + ++ G T +
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 415 RVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD 467
++PT +D +VL G++ + +L+E + ++ Y S + M D
Sbjct: 537 KIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREI---YESQFGNGVMND 586
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 3/249 (1%)
Query: 215 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEP 274
WPS G++ ++DL +Y +L+ I+ + L+SA RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 275 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKC 334
E G I IDG+ S+ L+ R +IPQ+ +F G+ R NLDP +SD EIW+ ++
Sbjct: 74 E-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
L++ I + P LD + D G S G +QL CL R +L + +IL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454
I++R +++ F TVI R+ + + D F+V+ ++ +YD S L + + VA
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYD--SILELYHYPADRFVA 250
Query: 455 EYRSSYKRN 463
+ S K N
Sbjct: 251 GFIGSPKMN 259
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 204/450 (45%), Gaps = 37/450 (8%)
Query: 17 SAISLSAAATTDVFIIISVMASVTWPVL-IVAIPTVIVAKYIQGYYLSSARELMRMNGTT 75
S I A A +F + +++ VT ++ + + T IV+ + Y+ + R L ++NG
Sbjct: 160 SGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGII 219
Query: 76 KAPIVNFAAETSQGVVSIRAF----KMMDMF--FENYLKLVDTDARLFFHSNAATEWLVL 129
+ I G+ I+ F K M+ F L+ V T A++F +V
Sbjct: 220 EEDI--------SGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVN 271
Query: 130 RIEXXXXXXXXXXXXXXXXXPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSV 189
+ + F+G S + L+ ++ + + + S
Sbjct: 272 NLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNE----LSNQFNMIQMALASA 327
Query: 190 ERIRQFMHLPPE---PPAI-IEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTF 245
ERI + + L E P A+ + E + G IE +++ Y P VLK IT
Sbjct: 328 ERIFEILDLEEEKDDPDAVELREVR--------GEIEFKNVWFSYDKKKP-VLKDITFHI 378
Query: 246 KEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 305
K +++ L R + + G+IL+DG+DI + LR+ + I+ Q+
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438
Query: 306 TLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362
LF +V+ NL +P +D EI EA + I LP ++ ++D GE+ S GQ
Sbjct: 439 ILFSTTVKENLKYGNPGA--TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496
Query: 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDS 422
RQL + R L +IL+LDEAT+++D+ T+ +Q + + G T I +AHR+ TI ++
Sbjct: 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA 556
Query: 423 DMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
D+ +VL GE+VE +L++ + +L
Sbjct: 557 DLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 22/267 (8%)
Query: 205 IIEETKPPASWPSHG--------RIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXX 254
IIE+T S+ + G ++ + Y RP+ P VL+G++ K+
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALV 1065
Query: 255 XXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314
++ L R +P G + +DG +I + ++ LR +L I+ QEP LF S+
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 315 NLDPLGMYSDN-------EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367
N+ Y DN EI A ++ + I LP ++ V D+G S GQ+Q
Sbjct: 1126 NI----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV 427
+ R L+++ IL+LDEAT+++D+ ++ ++Q + + G T I +AHR+ TI ++D+ +V
Sbjct: 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241
Query: 428 LSYGELVEYDLPSKLMETNSAFSKLVA 454
+ G++ E+ +L+ + +V+
Sbjct: 1242 IQNGKVKEHGTHQQLLAQKGIYFSMVS 1268
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 8/241 (3%)
Query: 218 HGRIELEDLKVRYRPNTPL-VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
G +E +++ Y + +LKG+ K + + RL +P +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNEIWEAME 332
G + IDG DI ++ ++ LR + ++ QEP LF ++ N+ + + M +EI +A++
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM---DEIEKAVK 501
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
+ I +LP D+ V + G S GQ+Q + R L++ +IL+LDEAT+++D+ +
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 393 DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
+A++Q + + G T I +AHR+ T+ ++D+ G +VE +LM + KL
Sbjct: 562 EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKL 621
Query: 453 V 453
V
Sbjct: 622 V 622
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 22/267 (8%)
Query: 205 IIEETKPPASWPSHG--------RIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXX 254
IIE+T S+ + G ++ + Y RP+ P VL+G++ K+
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALV 1065
Query: 255 XXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314
++ L R +P G + +DG +I + ++ LR +L I+ QEP LF S+
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 315 NLDPLGMYSDN-------EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367
N+ Y DN EI A ++ + I LP ++ V D+G S GQ+Q
Sbjct: 1126 NI----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV 427
+ R L+++ IL+LDEAT+++D+ ++ ++Q + + G T I +AHR+ TI ++D+ +V
Sbjct: 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241
Query: 428 LSYGELVEYDLPSKLMETNSAFSKLVA 454
+ G++ E+ +L+ + +V+
Sbjct: 1242 IQNGKVKEHGTHQQLLAQKGIYFSMVS 1268
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 8/241 (3%)
Query: 218 HGRIELEDLKVRYRPNTPL-VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
G +E +++ Y + +LKG+ K + + RL +P +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNEIWEAME 332
G + IDG DI ++ ++ LR + ++ QEP LF ++ N+ + + M +EI +A++
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM---DEIEKAVK 501
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
+ I +LP D+ V + G S GQ+Q + R L++ +IL+LDEAT+++D+ +
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 393 DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
+A++Q + + G T I +AHR+ T+ ++D+ G +VE +LM + KL
Sbjct: 562 EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKL 621
Query: 453 V 453
V
Sbjct: 622 V 622
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 223 LEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILID 282
L D+ +PN+ + G + K + S L R +P G I ID
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGK---------------STIFSLLERFYQPTAGEITID 62
Query: 283 GLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL--DPLGMYSDNEIWEAMEKCQLKATI 340
G I ++ L++ R+++ + Q+ + G++R NL G Y+D ++W+ ++ ++ +
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400
+P L++ V + G S GQRQ + R L+ +IL+LDEATAS+DS +++++Q+ +
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 401 REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455
G T + +AHR+ TI D+D + G++ ++L+ T+ ++K V+E
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 113/460 (24%), Positives = 194/460 (42%), Gaps = 38/460 (8%)
Query: 14 DLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNG 73
+L + A A+ + ++ V ++ VL V P I+A I G YL R+L ++
Sbjct: 139 NLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIA-VIYGRYL---RKLTKVTQ 194
Query: 74 TTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVD-----------TDARLFFHSNA 122
+ A A E V ++RAF E Y VD A F +
Sbjct: 195 DSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGL 254
Query: 123 ATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPGF-VGLSLSYALTLSSIQVIMTRWYCN 181
+ +VL + + F VG+S+ ++ +Y
Sbjct: 255 SGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGG----------LSSFYSE 304
Query: 182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY--RPNTPLVLK 239
L + + R+ + + P+ P E G +E +++ Y RP P + +
Sbjct: 305 LMKGLGAGGRLWELLEREPKLP--FNEGVILNEKSFQGALEFKNVHFAYPARPEVP-IFQ 361
Query: 240 GITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
+ + ++S L RL +P +G I +DG DI + LR+K+
Sbjct: 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421
Query: 300 IIPQEPTLFRGSVRTNL-----DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
+ QEP LF S+ N+ DP + ++ EI E A I P ++ V ++
Sbjct: 422 TVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQGFNTVVGEK 480
Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
G S GQ+Q + R LLK +IL+LDEAT+++D+ + ++Q + G TV+ +AH
Sbjct: 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH 540
Query: 415 RVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLV 453
R+ TI +++M VL G++ EY +L+ N + KL+
Sbjct: 541 RLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 131/250 (52%), Gaps = 8/250 (3%)
Query: 218 HGRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE 275
+G++ ++++ Y RP +LKG++ + + +++ L R +
Sbjct: 1074 YGKVIFKNVRFAYPERPEIE-ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132
Query: 276 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWEAM 331
G I IDG +I ++ + R++++I+ QEPTLF S+ N LDP + + ++ EA
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV-TMAQVEEAA 1191
Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
+ I+ LP ++ V D G S GQ+Q + R L++ +IL+LDEAT+++D+
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 1251
Query: 392 TDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451
++ ++Q + G T I +AHR+ T+ ++D V+S G ++E ++LM A+ K
Sbjct: 1252 SEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYK 1311
Query: 452 LVAEYRSSYK 461
L + + K
Sbjct: 1312 LTQKQMTEKK 1321
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 6/239 (2%)
Query: 219 GRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
G I +E++ Y RP+ P +L+G+ +IS L R +
Sbjct: 414 GDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--YSDNEIWEAMEKC 334
G+I IDG+D+ + L+ LR ++++ QEP LF ++ N+ LG + E+ A +
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENI-SLGKEGITREEMVAACKMA 531
Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
+ I LP ++ V D G S GQ+Q + R L++ +IL+LDEAT+++D+ ++
Sbjct: 532 NAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG 591
Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453
I+Q+ + + G T I +AHR+ TI ++D+ + G++VE LM + LV
Sbjct: 592 IVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLV 650
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 113/463 (24%), Positives = 196/463 (42%), Gaps = 44/463 (9%)
Query: 14 DLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNG 73
+L + A A+ + ++ V ++ VL V P I+A I G YL R+L ++
Sbjct: 170 NLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIA-VIYGRYL---RKLTKVTQ 225
Query: 74 TTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVD-----------TDARLFFHSNA 122
+ A A E V ++RAF E Y VD A F +
Sbjct: 226 DSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGL 285
Query: 123 ATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPGF-VGLSLSYALTLSSIQVIMTRWYCN 181
+ +VL + + F VG+S+ ++ +Y
Sbjct: 286 SGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGG----------LSSFYSE 335
Query: 182 LSNNIVSVERIRQFMHLPPEPP---AIIEETKPPASWPSHGRIELEDLKVRY--RPNTPL 236
L + + R+ + + P+ P +I K G +E +++ Y RP P
Sbjct: 336 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKS-----FQGALEFKNVHFAYPARPEVP- 389
Query: 237 VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
+ + + + ++S L RL +P +G I +DG DI + LR+
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 297 KLSIIPQEPTLFRGSVRTNL-----DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351
K+ + QEP LF S+ N+ DP + ++ EI E A I P ++ V
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVIT 411
++G S GQ+Q + R LLK +IL+LDEAT+++D+ + ++Q + G TV+
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 568
Query: 412 VAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKLV 453
+AH + TI +++M VL G++ EY +L+ + N + KL+
Sbjct: 569 IAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 131/276 (47%), Gaps = 6/276 (2%)
Query: 179 YCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238
+ L+ + S++R+ Q L E I GRI+++ + +Y N +L
Sbjct: 301 FTTLTQSFASMDRVFQ---LIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPIL 357
Query: 239 KGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298
K I + ++ LI+ + R + +G+ILIDG +I LR ++
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417
Query: 299 SIIPQEPTLFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 356
++ Q+ LF +V+ N+ LG +D E+ EA + I LP D+ V + G
Sbjct: 418 GLVQQDNILFSDTVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476
Query: 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRV 416
S GQ+Q + R+ L IL+LDEAT+++D +++I+Q + T + VAHR+
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 536
Query: 417 PTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
TIT +D +V+ G +VE +L+ A+ L
Sbjct: 537 STITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 6/239 (2%)
Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 277
H I +++ RY+P++P++L I + K+ L + R PENG
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKC 334
++LIDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLA 118
Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
IS L ++ V ++G S GQRQ + R L+ +IL+ DEAT+++D ++
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
++ R + + G TVI +AHR+ T+ ++D +V+ G++VE +L+ E S +S L
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 6/239 (2%)
Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 277
H I +++ RY+P++P++L I + K+ L + R PENG
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKC 334
++LIDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLA 118
Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
IS L ++ V ++G S GQRQ + R L+ +IL+ DEAT+++D ++
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
++ R + + G TVI +AHR+ T+ ++D +V+ G++VE +L+ E S +S L
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 119
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
IS L ++ V ++G S GQRQ + R L+ +IL+ DEAT+++D ++ ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
R + + G TVI +AHR+ T+ ++D +V+ G++VE +L+ E S +S L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
IS L ++ V ++G S GQRQ + R L+ +IL+ DEAT+++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
R + + G TVI +AHR+ T+ ++D +V+ G++VE +L+ E S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 118/237 (49%), Gaps = 2/237 (0%)
Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 277
+G ++++D+ Y+ L ++ + + + + R + ++G
Sbjct: 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYSDNEIWEAMEKCQ 335
I +DG D+ L +LR +++ Q LF ++ N+ G Y+ +I +A +
Sbjct: 399 SICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAH 458
Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
I +P LD+ + + G + S GQRQ + R LL+ +L+LDEAT+++D+ ++
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
+Q + E TV+ +AHR+ TI +D +V+ GE++E + L+ + A+++L
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
IS L ++ V ++G S GQRQ + R L+ +IL+ D+AT+++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
R + + G TVI +AHR+ T+ ++D +V+ G++VE +L+ E S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 119
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
IS L ++ V ++G S GQRQ + R L+ +IL+ DEAT+++D ++ ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
R + + G TVI +A R+ T+ ++D +V+ G++VE +L+ E S +S L
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
I +++ RY+P++P++L I + K+ L + R PENG++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
IDG D+ LR ++ ++ Q+ L S+ N+ +P GM + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
IS L ++ V ++G S GQRQ + R L+ +IL+ DEAT+++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
R + + G TVI +A R+ T+ ++D +V+ G++VE +L+ E S +S L
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 268 LFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY----- 322
L+R + E G I I G ++ +R+ + I+PQ+ LF +++ N+ +Y
Sbjct: 66 LYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDA 120
Query: 323 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382
+D E+ +A + QL I LP D+ V ++G S G+RQ + R LLK +I++ D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 383 EATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL 442
EAT+S+DS T+ + Q+ + + T+I +AHR+ TI+ ++ ++L+ G++VE L
Sbjct: 181 EATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDL 240
Query: 443 METNSAFSKL 452
++ N ++++
Sbjct: 241 LKLNGEYAEM 250
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 11/243 (4%)
Query: 219 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 332
G++L+DG + L T+++ + QEP LF S R N+ G+ + E AME
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
IS P D+ V + G S GQRQ L R L+++ R+L+LD+AT+++D+
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
+QR++ E E+ TV+ + H++ + + L G + E +LME +
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 451 KLV 453
+V
Sbjct: 252 SMV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 11/243 (4%)
Query: 219 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 332
G++L+DG + L T+++ + QEP LF S R N+ G+ + E AME
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
IS P D+ V + G +VGQRQ L R L+++ R+L+LD AT+++D+
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
+QR++ E E+ TV+ + ++ + + L G + E +LME +
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 451 KLV 453
+V
Sbjct: 252 SMV 254
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 266 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYS 323
S + R + + G IL+DG D+ L LR +++++ Q LF +V N+ YS
Sbjct: 387 SLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYS 446
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
+I EA I+++ LD+ + + G S GQRQ + R LL+ + IL+LDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 384 ATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443
AT+++D+ ++ +Q + E T + +AHR+ TI +D +V+ G +VE + L+
Sbjct: 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL 566
Query: 444 ETNSAFSKL 452
E +++L
Sbjct: 567 EHRGVYAQL 575
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 5/245 (2%)
Query: 212 PASWP---SHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISAL 268
P + P GRIE E++ Y + L+ ++ T ++ L
Sbjct: 42 PGAGPLRFQKGRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
Query: 269 FRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN-EI 327
FR + +G I IDG DI + LR+ + ++PQ+ LF ++ N+ + + N E+
Sbjct: 101 FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160
Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
A + + I P + V + G S G++Q + R +LK I++LDEAT++
Sbjct: 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSA 220
Query: 388 IDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNS 447
+D++ + +Q + + T I VAHR+ T+ ++D +V+ G +VE L+
Sbjct: 221 LDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGG 280
Query: 448 AFSKL 452
++ +
Sbjct: 281 VYADM 285
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 266 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--YS 323
S + R + + G IL+DG D+ L LR +++++ Q LF +V N+ YS
Sbjct: 387 SLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYS 446
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
+I EA I+++ LD+ + + G S GQRQ + R LL+ + IL+LDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 384 ATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443
AT+++D+ ++ +Q + E T + +AHR+ TI +D +V+ G +VE S+L+
Sbjct: 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Query: 444 ETNSAFSKL 452
+ +++L
Sbjct: 567 AQHGVYAQL 575
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 11/243 (4%)
Query: 219 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
G ++ +D+ Y PN P VL+G+T T + + L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 332
G++L+DG + L T+++ + QEP LF S R N+ G+ + E AME
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
IS P D+ V + G S GQRQ L R L+++ R+L+LD AT+++D+
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
+QR++ E E+ TV+ + ++ + + L G + E +LME +
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 451 KLV 453
+V
Sbjct: 252 SMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 13/254 (5%)
Query: 211 PPASW--PSH--GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXL 264
PP+ P H G ++ +D+ Y PN P LVL+G+T T + +
Sbjct: 1 PPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 265 ISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSD 324
+ L L +P G++L+DG + + L +++ + QEP +F S++ N+ G+
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIA-YGLTQK 118
Query: 325 ---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381
EI A K + IS LP D+ V + G S GQRQ L R L+++ +L+L
Sbjct: 119 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 178
Query: 382 DEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP 439
D+AT+++D+ + +++++ E E +V+ + + + +D + L G + E
Sbjct: 179 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTH 238
Query: 440 SKLMETNSAFSKLV 453
+LME + +V
Sbjct: 239 QQLMEKKGCYWAMV 252
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 16/227 (7%)
Query: 235 PLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDL 294
P L GIT + E L+SAL ++ G + I G
Sbjct: 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----------- 66
Query: 295 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
++ +PQ+ + S+R N+ + ++ C L + LP + + ++
Sbjct: 67 --SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEK 124
Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA-ILQRII--REEFPGSTVIT 411
G N S GQ+Q L R + I + D+ +++D+ I + +I + T I
Sbjct: 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184
Query: 412 VAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS 458
V H + + D+ +V+S G++ E +L+ + AF++ + Y S
Sbjct: 185 VTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYAS 231
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 264 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 320
LI + L P G +L+DG ++ ++ +L R ++ +I Q L L
Sbjct: 47 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106
Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 376
+ DN K ++K ++ L L+ + D+ + N S GQ+Q + R L
Sbjct: 107 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 159
Query: 377 RILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
++L+ DEAT+++D AT + ++++ G T++ + H + + D V+S GEL
Sbjct: 160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
Query: 434 VEYDLPSKL 442
+E D S++
Sbjct: 220 IEQDTVSEV 228
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 264 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 320
LI + L P G +L+DG ++ ++ +L R ++ +I Q L L
Sbjct: 70 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129
Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 376
+ DN K ++K ++ L L+ + D+ + N S GQ+Q + R L
Sbjct: 130 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 182
Query: 377 RILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
++L+ D+AT+++D AT + ++++ G T++ + H + + D V+S GEL
Sbjct: 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
Query: 434 VEYDLPSKL 442
+E D S++
Sbjct: 243 IEQDTVSEV 251
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 17/190 (8%)
Query: 264 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 320
LI + L P G +L+DG ++ ++ +L R ++ I Q L L
Sbjct: 70 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALP 129
Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 376
+ DN K ++K ++ L L+ + D+ + N S GQ+Q + R L
Sbjct: 130 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 182
Query: 377 RILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
++L+ D+AT+++D AT + ++++ G T++ + H + D V+S GEL
Sbjct: 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
Query: 434 VEYDLPSKLM 443
+E D S++
Sbjct: 243 IEQDTVSEVF 252
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 20/243 (8%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
+++E+L Y T LKGI K L +++P +GRIL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 281 IDG--LDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLGMYS----DNEIWEAME 332
D +D G+ LR + I+ Q+P LF SV ++ G + ++EI + ++
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDV-SFGAVNMKLPEDEIRKRVD 125
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
+ I L S GQ++ + VL+ ++L+LDE TA +D
Sbjct: 126 NALKRTGIEHLK-------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTI-TDSDMFMVLSYGELVEYDLPSKLMETNSAF 449
+ + +++ E + G T+I H + + D V+ G ++ P ++
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI 238
Query: 450 SKL 452
K+
Sbjct: 239 RKV 241
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 17/194 (8%)
Query: 271 LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWE 329
+V+P+ G + ++G DI L R + +PQ+ LF SV N+ G+ + +
Sbjct: 47 IVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPHLSVYRNI-AYGLRNVERVER 103
Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
++ + + LLD + S G+RQ L R L+ + R+L+LDE +++D
Sbjct: 104 DRRVREMAEKLG-IAHLLDRKPA----RLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
Query: 390 SATDAILQ---RIIREEFPGSTVITVAHR-VPTITDSDMFMVLSYGELVEYDLPSKLMET 445
T +L R ++ EF ++ V H + +D V+ G +VE KL E
Sbjct: 159 LKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVE---KGKLKEL 214
Query: 446 NSAFSKLVAEYRSS 459
SA + VAE+ S+
Sbjct: 215 FSAKNGEVAEFLSA 228
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEA 330
+EP G+I G ++S Q + G+++ N+ +G+ Y +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
++ CQL+ IS+ + + + G S GQR L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 391 ATDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS------YGELVEY-----DL 438
T+ I + + + T I V ++ + +D ++L YG E D
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Query: 439 PSKLMETNSAFSKLVAEYRSS 459
SKLM +S F + AE R+S
Sbjct: 253 SSKLMGCDS-FDQFSAERRNS 272
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAM 331
+EP G+I G ++S Q + G+++ N+ Y + +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVI 134
Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
+ CQL+ IS+ + + + G S GQR L R + K + +LD +D
Sbjct: 135 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 194
Query: 392 TDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS------YGELVEY-----DLP 439
T+ I + + + T I V ++ + +D ++L YG E D
Sbjct: 195 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 254
Query: 440 SKLMETNSAFSKLVAEYRSS 459
SKLM +S F + AE R+S
Sbjct: 255 SKLMGCDS-FDQFSAERRNS 273
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEA 330
+EP G+I G ++S Q + G+++ N+ +G+ Y +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
++ CQL+ IS+ + + + G S GQR L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 391 ATDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS------YGELVEY-----DL 438
T+ I + + + T I V ++ + +D ++L YG E D
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Query: 439 PSKLMETNSAFSKLVAEYRSS 459
SKLM +S F + AE R+S
Sbjct: 253 SSKLMGCDS-FDQFSAERRNS 272
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR--E 402
+L+D+ + + S GQ+Q L R L+K+ ++L+ DE +++D+ I++ I+ +
Sbjct: 121 LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180
Query: 403 EFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYK 461
+ G T + V H + +T + V + G+LV+Y P ++ +S + VA + +
Sbjct: 181 QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY--DSPKNMFVASFIGNPP 238
Query: 462 RNSMQD 467
N ++D
Sbjct: 239 TNFLRD 244
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
D + E E L ++R P L S GQRQ LGR +++R ++ + DE
Sbjct: 120 DKRVREVAEXLGLTELLNRKPREL-----------SGGQRQRVALGRAIIRRPKVFLXDE 168
Query: 384 ATASIDS----ATDAILQRIIREEFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDL 438
+++D+ A L+++ R+ G T I V H +V T D V + GEL +
Sbjct: 169 PLSNLDAKLRVKXRAELKKLQRQ--LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
Query: 439 PSKL 442
P ++
Sbjct: 227 PDEV 230
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 46/248 (18%)
Query: 221 IELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE--- 275
I +EDL+ Y R T GI+ E +I A+ + + P
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 276 -NGRILIDGLDICSMGLKDLR----TKLSIIPQ------EPTL-----FRGSVRTNLDPL 319
+GR+L G D+ +M ++LR +++++PQ PT+ F+ +V +
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAH---- 120
Query: 320 GM-YSDNEIWE-AMEKCQL-----KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372
G+ +S +E+ E A EK ++ +A ++ P+ L S G +Q + L
Sbjct: 121 GVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQL-----------SGGMKQRVLIALAL 169
Query: 373 LKRNRILVLDEATASIDSATDA-ILQRIIREEFPGS-TVITVAHRVPTITD-SDMFMVLS 429
L +L+LDE T+++D T A I+Q + + T+I V H + + +D V+
Sbjct: 170 LLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIY 229
Query: 430 YGELVEYD 437
G LVEY+
Sbjct: 230 GGNLVEYN 237
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
+LI G S G+ ++S Q + G+++ N+ Y + ++ CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQ 141
Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQ 397
I++ ++ + + G S GQR L R + K + +LD +D T + + +
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEY-----------DLPSKLMETN 446
+ + T I V ++ + +D ++L G Y D SKLM +
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 447 SAFSKLVAEYRSS 459
+ F + E RSS
Sbjct: 262 T-FDQFTEERRSS 273
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 288 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEK-CQLKATISRLPML 346
S G+ ++S Q + G+++ N+ +G+ D ++++ K CQL+ I++
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENI--IGVSYDEYRYKSVVKACQLQQDITKFAEQ 148
Query: 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQRIIREEFP 405
++ + + G S GQR L R + K + +LD +D T + + + + +
Sbjct: 149 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 208
Query: 406 GSTVITVAHRVPTITDSDMFMVLSYGELVEY-----------DLPSKLMETNSAFSKLVA 454
T I V ++ + +D ++L G Y D SKLM ++ F +
Sbjct: 209 NKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDT-FDQFTE 267
Query: 455 EYRSS 459
E RSS
Sbjct: 268 ERRSS 272
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
+LI G S G+ ++S Q + G+++ N+ Y + ++ CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQ 141
Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQ 397
I++ ++ + + G S GQR L R + K + +LD +D T + + +
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEY-----------DLPSKLMETN 446
+ + T I V ++ + +D ++L G Y D SKLM +
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 447 SAFSKLVAEYRSS 459
+ F + E RSS
Sbjct: 262 T-FDQFTEERRSS 273
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Query: 274 PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGM-----YSDNEI 327
P++GRIL+DG D+ + + + ++ + Q +LF +V+ NL+ GM +
Sbjct: 52 PDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLE-FGMRMKKIKDPKRV 108
Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
+ +++ + R P+ L S G++Q L R L+ +IL+LDE ++
Sbjct: 109 LDTARDLKIEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSA 157
Query: 388 IDSATDAILQRIIREEFPGSTVITVAHRVPTITD----SDMFMVLSYGELVEYDLPSKLM 443
+D T + ++ +TV H T+ +D V+ G+L++ P ++
Sbjct: 158 LDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216
Query: 444 E 444
E
Sbjct: 217 E 217
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAM 331
+EP G+I G ++S Q + G+++ N+ Y + +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVI 134
Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
+ CQL+ IS+ + + + G S GQ+ L R + K + +LD +D
Sbjct: 135 KACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVL 194
Query: 392 TDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS------YGELVEY-----DLP 439
T+ I + + + T I V ++ + +D ++L YG E D
Sbjct: 195 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 254
Query: 440 SKLMETNSAFSKLVAEYRSS 459
SKLM +S F + AE R+S
Sbjct: 255 SKLMGCDS-FDQFSAERRNS 273
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEA 330
+EP G+I G ++S Q + G+++ N+ +G+ Y +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
++ CQL+ IS+ + + + G S GQ+ L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 192
Query: 391 ATDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS------YGELVEY-----DL 438
T+ I + + + T I V ++ + +D ++L YG E D
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 252
Query: 439 PSKLMETNSAFSKLVAEYRSS 459
SKLM +S F + AE R+S
Sbjct: 253 SSKLMGCDS-FDQFSAERRNS 272
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 13/184 (7%)
Query: 288 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLL 347
S G+ ++S Q + G+++ N+ Y + ++ CQL+ I++
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 348 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQRIIREEFPG 406
++ + + G S GQR L R + K + +LD +D T + + + + +
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 407 STVITVAHRVPTITDSDMFMVLSYGELVEY-----------DLPSKLMETNSAFSKLVAE 455
T I V ++ + +D ++L G Y D SKLM ++ F + E
Sbjct: 211 KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDT-FDQFTEE 269
Query: 456 YRSS 459
RSS
Sbjct: 270 RRSS 273
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 24/224 (10%)
Query: 232 PNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGL 291
P ++G++ +E ++ + L P G + I G + L
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD--L 82
Query: 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS--------DNEIWEAMEKCQLKATISRL 343
+ + ++ Q LF+ + G+ D + E + +L++ +R
Sbjct: 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 344 PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE- 402
P L S GQ+Q L R L R ++L+ DE A+ID+ L+ +R+
Sbjct: 143 PHEL-----------SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191
Query: 403 -EFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPSKLME 444
+ G T + V H + + +D +VL G + ++ P ++ E
Sbjct: 192 HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 29/239 (12%)
Query: 213 ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLV 272
A W G L+D+ + L + G T K L+ + +
Sbjct: 14 AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGK---------------TSLLMMIMGEL 58
Query: 273 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAME 332
EP G+I G ++S Q + G+++ N+ Y + ++
Sbjct: 59 EPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIK 105
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
CQL+ IS+ + + + G S GQR L R + K + +LD +D T
Sbjct: 106 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 393 DA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
+ I + + + T I V ++ + +D ++L G Y S+L FS
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 29/239 (12%)
Query: 213 ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLV 272
A W G L+D+ + L + G T K L+ + +
Sbjct: 26 AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGK---------------TSLLMMIMGEL 70
Query: 273 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAME 332
EP G+I G ++S Q + G+++ N+ Y + ++
Sbjct: 71 EPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIK 117
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
CQL+ IS+ + + + G S GQR L R + K + +LD +D T
Sbjct: 118 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
Query: 393 DA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
+ I + + + T I V ++ + +D ++L G Y S+L FS
Sbjct: 178 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 236
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 90/240 (37%), Gaps = 32/240 (13%)
Query: 213 ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLV 272
A W G L+D+ + L + G T K L+ + +
Sbjct: 14 AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGK---------------TSLLMMIMGEL 58
Query: 273 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEAM 331
EP G+I G ++S Q + G+++ N+ +G+ Y + +
Sbjct: 59 EPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENI--IGVSYDEYRYRSVI 103
Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
+ CQL+ IS+ + + + G S GQR L R + K + +LD +D
Sbjct: 104 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 163
Query: 392 TDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
T+ I + + + T I V ++ + +D ++L G Y S+L FS
Sbjct: 164 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
+ + + E QL + R P L S GQRQ +GR L+ + +LDE
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 384 ATASIDSATDAILQ-RIIR-EEFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPS 440
+++D+A ++ I R + G T+I V H +V +T +D +VL G + + P
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 441 KLMETNSAFSKLVAEYRSSYKRN 463
+L + + VA + S K N
Sbjct: 220 ELYHYPA--DRFVAGFIGSPKMN 240
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
+ + + E QL + R P L S GQRQ +GR L+ + +LDE
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 384 ATASIDSATDAILQ-RIIR-EEFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPS 440
+++D+A ++ I R + G T+I V H +V +T +D +VL G + + P
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 441 KLMETNSAFSKLVAEYRSSYKRN 463
+L + + VA + S K N
Sbjct: 220 ELYHYPA--DRFVAGFIGSPKMN 240
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 29/231 (12%)
Query: 219 GRIELEDLKVRYRPNTPL---VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE 275
GRIE+ ++ + TPL L+ ++ E L+ + L+EP
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 276 NGRILIDGLDICSMGLKDLRTKLSIIPQEP--TLFRGSV--RTNLDPLGMYSDNE----I 327
+G +L DG ++R + I Q P F V Y D + +
Sbjct: 63 SGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 328 WEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
+AME L + R+P L S G+++ + V++ IL+LDE
Sbjct: 120 KKAMEFVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPL 168
Query: 386 ASIDSATDAILQRIIRE-EFPGSTVITVAHRVPTITDS-DMFMVLSYGELV 434
+D L RI+ + + G TVI ++H + T+ + D +VL G+ V
Sbjct: 169 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV 219
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 28/192 (14%)
Query: 264 LISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGM 321
L+ + + +P +G+I D D+ + KD + ++ Q L+ +V N+ PL +
Sbjct: 45 LLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLEL 102
Query: 322 YS------DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375
D ++ E + + ++R P L S GQ+Q + R L+K
Sbjct: 103 RKAPREEIDKKVREVAKMLHIDKLLNRYPWQL-----------SGGQQQRVAIARALVKE 151
Query: 376 NRILVLDEATASIDS----ATDAILQRIIREEFPGSTVITVAH-RVPTITDSDMFMVLSY 430
+L+LDE +++D+ A L+R+ +E G T + V H + + +D V+
Sbjct: 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIRE 209
Query: 431 GELVEYDLPSKL 442
GE+++ P ++
Sbjct: 210 GEILQVGTPDEV 221
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
D + E E L ++R P L S GQRQ LGR ++++ ++ ++DE
Sbjct: 117 DQRVREVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMDE 165
Query: 384 ATASIDSA----TDAILQRIIREEFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDL 438
+++D+ A L+++ R+ G T I V H +V +T D V++ G L +
Sbjct: 166 PLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
Query: 439 PSKLME 444
P ++ +
Sbjct: 224 PDEVYD 229
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 1/170 (0%)
Query: 288 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLL 347
S G+ ++S Q + G+++ N+ Y + ++ CQL+ I++
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 348 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQRIIREEFPG 406
++ + + G S GQR L R + K + +LD +D T + + + + +
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 407 STVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
T I V ++ + +D ++L G Y S+L FS + Y
Sbjct: 211 KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 88/191 (46%), Gaps = 25/191 (13%)
Query: 271 LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGMYS----- 323
L EP GRI D+ + KD +S++ Q ++ +V N+ PL +
Sbjct: 61 LEEPTEGRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 118
Query: 324 -DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382
D + A E Q++ ++R P L S GQRQ + R ++ +L++D
Sbjct: 119 IDKRVRWAAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMD 167
Query: 383 EATASIDSATDAILQ---RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP 439
E +++D+ ++ + ++++ +T+ +V +T D V++ G+L++ P
Sbjct: 168 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSP 227
Query: 440 SKL-METNSAF 449
+++ + NS F
Sbjct: 228 TEVYLRPNSVF 238
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 88/191 (46%), Gaps = 25/191 (13%)
Query: 271 LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGMYS----- 323
L EP GRI D+ + KD +S++ Q ++ +V N+ PL +
Sbjct: 60 LEEPTEGRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117
Query: 324 -DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382
D + A E Q++ ++R P L S GQRQ + R ++ +L++D
Sbjct: 118 IDKRVRWAAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMD 166
Query: 383 EATASIDSATDAILQ---RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP 439
E +++D+ ++ + ++++ +T+ +V +T D V++ G+L++ P
Sbjct: 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSP 226
Query: 440 SKL-METNSAF 449
+++ + NS F
Sbjct: 227 TEVYLRPNSVF 237
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
+ + + E QL + R P L S GQRQ +GR L+ + +LD+
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDQ 159
Query: 384 ATASIDSATDAILQ-RIIR-EEFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPS 440
+++D+A ++ I R + G T+I V H +V +T +D +VL G + + P
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 441 KLMETNSAFSKLVAEYRSSYKRN 463
+L + + VA + S K N
Sbjct: 220 ELYHYPA--DRFVAGFIGSPKMN 240
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRV 416
S GQ+Q + R L I++ DE T ++DS T + +++++ E G TV+ V H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDI 206
Query: 417 PTITDSDMFMVLSYGEL 433
+ + L GE+
Sbjct: 207 NVARFGERIIYLKDGEV 223
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 29/230 (12%)
Query: 220 RIELEDLKVRYRPNTPL---VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
RIE+ ++ + TPL L+ ++ E L+ + L+EP +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEP--TLFRGSV--RTNLDPLGMYSDNE----IW 328
G +L DG ++R + I Q P F V Y D + +
Sbjct: 62 GDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 329 EAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386
+AME L + R+P L S G+++ + V++ IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 387 SIDSATDAILQRIIRE-EFPGSTVITVAHRVPTITDS-DMFMVLSYGELV 434
+D L RI+ + + G TVI ++H + T+ + D +VL G+ V
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV 217
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRV 416
S GQ+Q + R L I++ D+ T ++DS T + +++++ E G TV+ V H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206
Query: 417 PTITDSDMFMVLSYGEL 433
+ + L GE+
Sbjct: 207 NVARFGERIIYLKDGEV 223
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD-AILQRIIREEFPGSTVITVAHR 415
N S GQ+Q + +L + R L LDE + +D + I Q + + G +I V H
Sbjct: 140 NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
Query: 416 VPTITDSDMFMVLSYG 431
+ + D D + +S G
Sbjct: 200 LEYLDDMDFILHISNG 215
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 331 MEKCQLKATISRLPMLLD--SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
M K +++ + + +LD ++ S GQ+Q L R L+K +L+LDE +++
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 389 DSATDAILQRIIRE--EFPGSTVITVAHRVPTI-TDSDMFMVLSYGELVEYDLPSKLMET 445
D+ + +++E G T++ V+H I +D VL G+LV+ P L +
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRV 416
S GQ+Q + R L I++ D+ T ++DS T + +++++ E G TV+ V H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206
Query: 417 PTITDSDMFMVLSYGEL 433
+ + L GE+
Sbjct: 207 NVARFGERIIYLKDGEV 223
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
E +EK +L L D + S GQ +L +GR L+ +++V+DE A +
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 389 DSA-TDAILQRIIREEFPGSTVITVAHRVPTITDS-DMFMVLSYGELV 434
I ++ + G T + + HR+ + + D V+ G+++
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
E +EK +L L D + S GQ +L +GR L+ +++V+DE A +
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 389 DSA-TDAILQRIIREEFPGSTVITVAHRVPTITDS-DMFMVLSYGELV 434
I ++ + G T + + HR+ + + D V+ G+++
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 331 MEKCQLKATISRLPMLLD--SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
M K +++ + + +LD ++ S Q+Q L R L+K +L+LDE +++
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 389 DSATDAILQRIIRE--EFPGSTVITVAHRVPTI-TDSDMFMVLSYGELVEYDLPSKLMET 445
D+ + +++E G T++ V+H I +D VL G+LV+ P L +
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
E +EK +L L D + S GQ +L +GR L+ +++V+D+ A +
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
Query: 389 DSA-TDAILQRIIREEFPGSTVITVAHRVPTITDS-DMFMVLSYGELV 434
I ++ + G T + + HR+ + + D V+ G+++
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQRIIR-EEFPGSTVIT 411
E + S GQRQL + R + ++++LDE T+++D A D +L +I + TV+
Sbjct: 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184
Query: 412 VAHR 415
H+
Sbjct: 185 TTHQ 188
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 30/247 (12%)
Query: 217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
S ++ + DL RY + VLKG++ + + + L +P
Sbjct: 3 SENKLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE 60
Query: 277 GRILIDGLDICSMGLKD-------------LRTKLSIIPQE------PTLFRGSVRTNLD 317
G I+++G +I + KD LRT+L+++ Q T+ + +
Sbjct: 61 GAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 120
Query: 318 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377
LG+ S ++ E K K I + + + S GQ+Q + R L
Sbjct: 121 VLGL-SKHDARERALKYLAKVGID------ERAQGKYPVHLSGGQQQRVSIARALAMEPD 173
Query: 378 ILVLDEATASIDSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
+L+ DE T+++D + RI+++ G T++ V H + S + L G++ E
Sbjct: 174 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233
Query: 436 YDLPSKL 442
P ++
Sbjct: 234 EGDPEQV 240
>pdb|1UP7|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
pdb|1UP7|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.4 Anstrom Resolution In The
Tetragonal Form With Nad And Glucose-6-Phosphate
Length = 417
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMYS--DNEIWEAMEK 333
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + ++++ +
Sbjct: 200 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKIST 259
Query: 334 CQLKA 338
+L+A
Sbjct: 260 HELRA 264
>pdb|1UP6|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
pdb|1UP6|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.55 Angstrom Resolution In The
Tetragonal Form With Manganese, Nad+ And
Glucose-6-Phosphate
Length = 416
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMY--SDNEIWEAMEK 333
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + + ++ +
Sbjct: 199 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLXEKKXFKKIST 258
Query: 334 CQLKA 338
+L+A
Sbjct: 259 HELRA 263
>pdb|1UP4|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
pdb|1UP4|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
Thermotoga Maritima At 2.85 Anstrom Resolution In The
Monoclinic Form
Length = 415
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQE--PTLFRGSVRTNLDPLGMY--SDNEIWEAMEK 333
++ + G D+ ++L+ KLS IP E PT F SVR ++P Y + + ++ +
Sbjct: 198 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLXEKKXFKKIST 257
Query: 334 CQLKA 338
+L+A
Sbjct: 258 HELRA 262
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 359 SVGQRQLFCLGRVLLKRNR---ILVLDEATASIDSATDAILQR-IIREEFPGSTVITVAH 414
S G+ Q L L + R + VLDE T + A LQR +++ G+TVI V H
Sbjct: 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH 791
Query: 415 RVPTITDSDMFMVLSYG 431
++ + SD + + G
Sbjct: 792 KMQVVAASDWVLDIGPG 808
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
+ G D+ LK R S P P V PLG N + AM + L AT
Sbjct: 80 LTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATY 139
Query: 341 SRLPMLLDSS-----VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
++ L + + D + G + L N I + D+ +ID AT
Sbjct: 140 NKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG-NLIAIYDDNKITIDGAT 195
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
+ G D+ LK R S P P V PLG N + AM + L AT
Sbjct: 80 LTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATY 139
Query: 341 SRLPMLLDSS-----VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
++ L + + D + G + L N I + D+ +ID AT
Sbjct: 140 NKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG-NLIAIYDDNKITIDGAT 195
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EFPGSTVITVAHRVP 417
S G+ Q + LL++ DE ++ +D + R+IR G V+ V H +
Sbjct: 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289
Query: 418 TITD-SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
+ SD+ V+ YGE Y + SK T + ++ + Y
Sbjct: 290 VLDYLSDVIHVV-YGEPGVYGIFSKPKGTRNGINEFLQGY 328
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
+ G D+ LK R S P P V PLG N + AM + L AT
Sbjct: 78 LTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATY 137
Query: 341 SRLPMLLDSS-----VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
++ L + + D + G + L N I + D+ +ID AT
Sbjct: 138 NKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG-NLIAIYDDNKITIDGAT 193
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EFPGSTVITVAHRVP 417
S G+ Q + LL++ DE ++ +D + R+IR G V+ V H +
Sbjct: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 275
Query: 418 TITD-SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
+ SD+ V+ YGE Y + SK T + ++ + Y
Sbjct: 276 VLDYLSDVIHVV-YGEPGVYGIFSKPKGTRNGINEFLQGY 314
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 74/198 (37%), Gaps = 38/198 (19%)
Query: 237 VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDL-- 294
+LKGI+ + K+ L+ L L P G++ ++G ++ K+L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 295 --RTKLSIIPQ---------------EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLK 337
KL + Q P L G + G Y +E+ L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELG-------LG 131
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA-TDAIL 396
+SR P L S G++Q + R L +L DE T ++DSA T ++
Sbjct: 132 DKLSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 397 QRIIREEFPGSTVITVAH 414
++ G++++ V H
Sbjct: 181 DIFLKINEGGTSIVMVTH 198
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 311 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370
++ +L +G+ ++N++WEA K L ++ WS Q L
Sbjct: 167 AIAEHLSGIGV-NENDVWEAXHKLNLPEDPTK---------------WS--QDDLLAFAS 208
Query: 371 VLLKRNRILVLDEATASIDSATDAILQRIIREE 403
+ + N+ V+ A D+A+D ++R++REE
Sbjct: 209 EIRRVNKPXVI--AANKADAASDEQIKRLVREE 239
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF 404
+ L++ + + E S G+ Q F +G ++ + + DE ++ +D +IIR
Sbjct: 209 LQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL 268
Query: 405 -PGSTVITVAHRVPTITDSDMFMVLSYG 431
P VI V H + + F+ + YG
Sbjct: 269 APTKYVICVEHDLSVLDYLSDFVCIIYG 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,526,415
Number of Sequences: 62578
Number of extensions: 413665
Number of successful extensions: 1181
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 95
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)