Query 044927
Match_columns 467
No_of_seqs 487 out of 2729
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:08:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 6.4E-92 1.4E-96 731.8 49.8 455 1-459 248-707 (716)
2 KOG0054 Multidrug resistance-a 100.0 2.7E-88 5.8E-93 755.9 52.1 457 1-457 918-1376(1381)
3 COG2274 SunT ABC-type bacterio 100.0 1.3E-86 2.9E-91 716.2 53.6 448 6-456 258-708 (709)
4 TIGR00957 MRP_assoc_pro multi 100.0 8.8E-84 1.9E-88 753.2 59.5 455 1-455 1065-1519(1522)
5 KOG0055 Multidrug/pheromone ex 100.0 1E-83 2.2E-88 704.2 51.4 454 2-457 769-1226(1228)
6 PRK11174 cysteine/glutathione 100.0 8.5E-83 1.8E-87 689.0 56.2 453 1-458 123-586 (588)
7 PLN03130 ABC transporter C fam 100.0 2.8E-82 6.2E-87 740.2 60.3 456 1-456 1013-1474(1622)
8 COG1132 MdlB ABC-type multidru 100.0 6.1E-82 1.3E-86 679.3 55.6 451 1-457 112-565 (567)
9 PLN03232 ABC transporter C fam 100.0 3.1E-81 6.7E-86 730.9 59.6 456 1-456 1010-1471(1495)
10 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.2E-80 2.6E-85 682.9 58.3 446 2-455 237-684 (686)
11 PTZ00243 ABC transporter; Prov 100.0 3.6E-80 7.7E-85 721.6 60.1 456 1-456 1058-1546(1560)
12 PRK11176 lipid transporter ATP 100.0 5.1E-80 1.1E-84 666.7 57.0 451 1-456 125-579 (582)
13 TIGR00958 3a01208 Conjugate Tr 100.0 4.5E-80 9.8E-85 679.1 55.3 446 1-452 261-710 (711)
14 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.1E-80 1.3E-84 680.0 55.9 450 1-453 254-709 (710)
15 PRK11160 cysteine/glutathione 100.0 1.3E-79 2.9E-84 661.0 56.8 450 1-455 120-573 (574)
16 TIGR01193 bacteriocin_ABC ABC- 100.0 1E-79 2.2E-84 677.8 55.6 448 1-454 256-707 (708)
17 PRK10790 putative multidrug tr 100.0 6.4E-79 1.4E-83 659.1 57.8 452 1-459 125-578 (592)
18 TIGR01271 CFTR_protein cystic 100.0 2.5E-79 5.4E-84 713.9 58.5 455 1-457 985-1453(1490)
19 TIGR03375 type_I_sec_LssB type 100.0 6.3E-79 1.4E-83 670.1 56.1 440 2-445 247-689 (694)
20 COG4987 CydC ABC-type transpor 100.0 3.1E-79 6.6E-84 616.8 47.5 449 1-454 118-571 (573)
21 COG4988 CydD ABC-type transpor 100.0 1.5E-78 3.2E-83 621.2 53.1 449 3-458 102-557 (559)
22 KOG0055 Multidrug/pheromone ex 100.0 5.2E-80 1.1E-84 675.0 43.3 453 2-456 132-588 (1228)
23 TIGR02203 MsbA_lipidA lipid A 100.0 6.3E-78 1.4E-82 649.2 56.2 451 1-456 114-568 (571)
24 PTZ00265 multidrug resistance 100.0 4.4E-78 9.5E-83 699.1 56.2 456 1-456 928-1465(1466)
25 TIGR01846 type_I_sec_HlyB type 100.0 2.2E-77 4.7E-82 657.6 57.5 451 1-456 239-692 (694)
26 PRK13657 cyclic beta-1,2-gluca 100.0 8.7E-77 1.9E-81 641.9 57.7 452 1-456 116-570 (588)
27 PRK10789 putative multidrug tr 100.0 3.5E-76 7.6E-81 634.1 56.8 451 1-456 96-550 (569)
28 TIGR02204 MsbA_rel ABC transpo 100.0 7.6E-76 1.7E-80 633.6 56.3 454 1-456 118-575 (576)
29 TIGR01192 chvA glucan exporter 100.0 2.2E-75 4.8E-80 629.3 57.6 452 1-456 116-570 (585)
30 KOG0056 Heavy metal exporter H 100.0 4.3E-78 9.4E-83 597.3 32.8 412 36-459 354-777 (790)
31 TIGR02868 CydC thiol reductant 100.0 1.8E-75 4E-80 624.4 51.4 413 1-416 113-529 (529)
32 TIGR01842 type_I_sec_PrtD type 100.0 5E-74 1.1E-78 614.8 55.6 436 2-444 102-542 (544)
33 KOG0057 Mitochondrial Fe/S clu 100.0 1.2E-74 2.5E-79 584.0 46.0 372 75-457 209-587 (591)
34 TIGR02857 CydD thiol reductant 100.0 7.3E-74 1.6E-78 612.0 53.6 423 1-428 104-529 (529)
35 COG5265 ATM1 ABC-type transpor 100.0 1.3E-74 2.8E-79 566.7 37.2 440 11-454 52-496 (497)
36 PTZ00265 multidrug resistance 100.0 5.1E-71 1.1E-75 640.2 55.0 451 2-456 158-728 (1466)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.1E-69 1.5E-73 575.6 52.7 427 1-436 113-551 (555)
38 PLN03232 ABC transporter C fam 100.0 8.3E-68 1.8E-72 618.1 54.1 438 1-456 401-840 (1495)
39 PLN03130 ABC transporter C fam 100.0 1.9E-67 4.1E-72 615.6 54.7 437 1-456 401-840 (1622)
40 COG4618 ArpD ABC-type protease 100.0 2.7E-68 5.8E-73 532.9 40.1 434 5-444 123-560 (580)
41 PRK10522 multidrug transporter 100.0 1.6E-64 3.5E-69 541.5 52.1 417 1-437 108-531 (547)
42 KOG0054 Multidrug resistance-a 100.0 1.7E-62 3.7E-67 548.9 51.9 437 1-454 302-741 (1381)
43 TIGR00957 MRP_assoc_pro multi 100.0 6.3E-62 1.4E-66 569.5 55.7 440 1-456 418-862 (1522)
44 TIGR00954 3a01203 Peroxysomal 100.0 9.5E-61 2.1E-65 520.5 48.8 414 1-430 198-653 (659)
45 TIGR01271 CFTR_protein cystic 100.0 1.5E-59 3.2E-64 548.1 54.4 430 1-453 182-645 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 6.9E-58 1.5E-62 534.6 52.4 440 1-455 347-880 (1560)
47 COG1126 GlnQ ABC-type polar am 100.0 5.6E-57 1.2E-61 409.4 24.3 214 220-446 2-227 (240)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-56 2.8E-61 438.5 28.0 237 219-456 1-237 (275)
49 COG1125 OpuBA ABC-type proline 100.0 1.6E-54 3.4E-59 401.0 20.5 213 221-446 2-227 (309)
50 COG1135 AbcC ABC-type metal io 100.0 3.5E-54 7.6E-59 409.9 22.9 215 221-446 2-233 (339)
51 cd03252 ABCC_Hemolysin The ABC 100.0 3.1E-52 6.6E-57 400.6 27.4 234 221-454 1-235 (237)
52 COG1117 PstB ABC-type phosphat 100.0 4.7E-53 1E-57 382.1 18.9 218 220-446 7-239 (253)
53 COG1120 FepC ABC-type cobalami 100.0 1.2E-52 2.7E-57 398.9 22.3 213 220-445 2-229 (258)
54 PRK14257 phosphate ABC transpo 100.0 3.4E-52 7.3E-57 417.3 26.1 225 215-446 75-315 (329)
55 COG1127 Ttg2A ABC-type transpo 100.0 6E-52 1.3E-56 382.1 23.0 217 219-448 7-239 (263)
56 cd03288 ABCC_SUR2 The SUR doma 100.0 3.7E-51 8E-56 397.8 29.2 238 217-454 16-254 (257)
57 cd03244 ABCC_MRP_domain2 Domai 100.0 4.4E-51 9.6E-56 388.4 27.0 219 220-438 2-220 (221)
58 cd03251 ABCC_MsbA MsbA is an e 100.0 9.1E-51 2E-55 389.6 27.3 231 221-451 1-232 (234)
59 COG3839 MalK ABC-type sugar tr 100.0 4.8E-51 1E-55 402.2 23.2 212 220-446 3-225 (338)
60 cd03253 ABCC_ATM1_transporter 100.0 2.6E-50 5.5E-55 387.0 27.7 232 221-453 1-233 (236)
61 cd03254 ABCC_Glucan_exporter_l 100.0 1.8E-50 3.9E-55 386.3 26.4 225 220-445 2-227 (229)
62 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.6E-51 1.6E-55 384.8 22.2 209 220-445 4-228 (254)
63 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.8E-50 1.7E-54 384.2 27.2 231 221-451 1-233 (238)
64 COG1136 SalX ABC-type antimicr 100.0 4.2E-50 9E-55 374.6 24.4 203 221-434 2-221 (226)
65 TIGR02314 ABC_MetN D-methionin 100.0 3.2E-50 7E-55 404.0 24.4 214 221-445 2-231 (343)
66 COG1116 TauB ABC-type nitrate/ 100.0 4.4E-50 9.5E-55 374.7 23.3 222 220-459 3-240 (248)
67 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-49 3.2E-54 377.7 26.5 218 220-437 2-220 (220)
68 COG1122 CbiO ABC-type cobalt t 100.0 3.3E-50 7.2E-55 381.8 21.8 214 220-445 3-229 (235)
69 COG3842 PotA ABC-type spermidi 100.0 1.7E-50 3.7E-55 400.3 20.6 212 220-446 5-228 (352)
70 cd03261 ABC_Org_Solvent_Resist 100.0 7.8E-50 1.7E-54 383.5 23.5 216 221-449 1-231 (235)
71 COG1124 DppF ABC-type dipeptid 100.0 1.3E-49 2.8E-54 368.3 22.8 215 220-445 3-232 (252)
72 COG2884 FtsE Predicted ATPase 100.0 7.5E-50 1.6E-54 355.1 19.0 207 221-439 2-221 (223)
73 COG3638 ABC-type phosphate/pho 100.0 1.4E-49 3.1E-54 365.4 20.6 212 220-443 3-236 (258)
74 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.3E-48 2.9E-53 367.8 25.8 206 216-439 2-207 (207)
75 PRK13631 cbiO cobalt transport 100.0 9.8E-49 2.1E-53 391.1 25.8 220 219-445 20-266 (320)
76 COG3840 ThiQ ABC-type thiamine 100.0 4.8E-49 1E-53 347.4 20.7 210 221-447 2-222 (231)
77 PRK13650 cbiO cobalt transport 100.0 1.2E-48 2.6E-53 384.4 25.6 215 220-445 4-230 (279)
78 cd03260 ABC_PstB_phosphate_tra 100.0 5.9E-49 1.3E-53 375.4 22.6 211 221-442 1-227 (227)
79 PRK11650 ugpC glycerol-3-phosp 100.0 1E-48 2.2E-53 396.0 25.4 212 220-445 3-225 (356)
80 cd03263 ABC_subfamily_A The AB 100.0 2E-48 4.2E-53 370.0 22.9 210 221-442 1-219 (220)
81 TIGR00960 3a0501s02 Type II (G 100.0 9.9E-49 2.1E-53 371.0 20.7 202 221-433 2-216 (216)
82 PRK11153 metN DL-methionine tr 100.0 2.6E-48 5.5E-53 392.2 24.9 214 221-445 2-231 (343)
83 PRK14250 phosphate ABC transpo 100.0 5.5E-48 1.2E-52 372.0 26.1 213 220-445 3-222 (241)
84 PRK11432 fbpC ferric transport 100.0 2.5E-48 5.3E-53 392.2 24.7 211 220-445 6-227 (351)
85 PRK13647 cbiO cobalt transport 100.0 2.3E-48 4.9E-53 381.5 23.7 212 220-443 4-226 (274)
86 PRK13635 cbiO cobalt transport 100.0 2.7E-48 5.8E-53 381.8 24.1 215 220-445 5-230 (279)
87 PRK13637 cbiO cobalt transport 100.0 2.6E-48 5.6E-53 383.5 23.6 215 221-444 3-234 (287)
88 cd03219 ABC_Mj1267_LivG_branch 100.0 2.8E-48 6E-53 372.9 22.7 215 221-444 1-232 (236)
89 PRK13537 nodulation ABC transp 100.0 2.6E-48 5.6E-53 386.4 23.1 212 220-445 7-228 (306)
90 cd03256 ABC_PhnC_transporter A 100.0 3.4E-48 7.5E-53 373.3 23.0 211 221-443 1-233 (241)
91 cd03248 ABCC_TAP TAP, the Tran 100.0 5.4E-48 1.2E-52 368.5 24.0 216 218-433 9-226 (226)
92 cd03296 ABC_CysA_sulfate_impor 100.0 6E-48 1.3E-52 371.3 24.2 211 220-445 2-227 (239)
93 PRK13643 cbiO cobalt transport 100.0 5E-48 1.1E-52 381.6 24.1 213 221-444 2-233 (288)
94 TIGR03265 PhnT2 putative 2-ami 100.0 3.2E-48 7E-53 391.9 23.2 211 220-445 4-225 (353)
95 TIGR02315 ABC_phnC phosphonate 100.0 5.4E-48 1.2E-52 372.5 23.1 211 221-443 2-234 (243)
96 cd03259 ABC_Carb_Solutes_like 100.0 3.9E-48 8.6E-53 366.1 21.5 202 221-437 1-213 (213)
97 cd03258 ABC_MetN_methionine_tr 100.0 6.4E-48 1.4E-52 369.7 23.1 213 221-444 2-230 (233)
98 PRK09536 btuD corrinoid ABC tr 100.0 7.1E-48 1.5E-52 393.8 24.3 213 220-445 3-229 (402)
99 PRK13646 cbiO cobalt transport 100.0 8.8E-48 1.9E-52 379.6 24.2 215 220-445 2-236 (286)
100 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.7E-48 8E-53 367.6 20.6 202 221-433 1-218 (218)
101 TIGR00972 3a0107s01c2 phosphat 100.0 1.1E-47 2.4E-52 371.2 24.1 215 221-444 2-232 (247)
102 PRK13636 cbiO cobalt transport 100.0 1E-47 2.2E-52 378.6 24.2 214 220-445 5-232 (283)
103 PRK10851 sulfate/thiosulfate t 100.0 1E-47 2.3E-52 388.2 24.7 211 220-445 2-227 (353)
104 PRK13634 cbiO cobalt transport 100.0 9E-48 1.9E-52 380.1 23.7 214 221-445 3-236 (290)
105 PRK14269 phosphate ABC transpo 100.0 1.1E-47 2.4E-52 371.1 23.8 217 220-445 2-231 (246)
106 TIGR03258 PhnT 2-aminoethylpho 100.0 7.6E-48 1.6E-52 389.9 23.1 213 218-445 3-229 (362)
107 COG1118 CysA ABC-type sulfate/ 100.0 2.9E-48 6.3E-53 368.6 18.7 211 220-445 2-228 (345)
108 PRK11629 lolD lipoprotein tran 100.0 1.3E-47 2.9E-52 367.5 23.5 208 220-438 5-228 (233)
109 cd03224 ABC_TM1139_LivF_branch 100.0 1.4E-47 3E-52 364.6 23.3 211 221-443 1-220 (222)
110 PRK09452 potA putrescine/sperm 100.0 1.6E-47 3.5E-52 388.9 25.1 211 220-445 14-235 (375)
111 PRK13651 cobalt transporter AT 100.0 1.3E-47 2.9E-52 380.7 24.0 215 220-445 2-255 (305)
112 TIGR01186 proV glycine betaine 100.0 5E-48 1.1E-52 390.3 20.9 200 235-445 6-220 (363)
113 COG1131 CcmA ABC-type multidru 100.0 6.9E-48 1.5E-52 380.2 21.4 212 220-444 4-226 (293)
114 PRK14242 phosphate transporter 100.0 2E-47 4.3E-52 370.8 24.2 217 220-445 6-238 (253)
115 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-47 2.7E-52 369.8 22.6 215 221-445 1-226 (242)
116 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.5E-46 3.2E-51 368.8 30.4 217 218-451 37-254 (282)
117 cd03226 ABC_cobalt_CbiO_domain 100.0 1.2E-47 2.6E-52 360.7 21.8 198 222-434 1-205 (205)
118 cd03250 ABCC_MRP_domain1 Domai 100.0 2.7E-47 6E-52 358.0 24.1 199 221-432 1-204 (204)
119 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-47 2.5E-52 364.8 21.7 208 221-442 1-219 (220)
120 cd03264 ABC_drug_resistance_li 100.0 1.4E-47 2.9E-52 361.9 22.0 202 221-437 1-211 (211)
121 PRK13632 cbiO cobalt transport 100.0 3.7E-47 8E-52 372.5 25.8 215 220-445 7-232 (271)
122 PRK13652 cbiO cobalt transport 100.0 2.7E-47 5.8E-52 374.6 24.7 214 220-445 3-228 (277)
123 PRK13640 cbiO cobalt transport 100.0 2.5E-47 5.4E-52 375.6 24.3 214 220-444 5-232 (282)
124 cd03266 ABC_NatA_sodium_export 100.0 2E-47 4.3E-52 362.5 22.7 205 221-437 2-218 (218)
125 PRK13644 cbiO cobalt transport 100.0 2.9E-47 6.4E-52 373.6 24.6 212 221-444 2-224 (274)
126 PRK11000 maltose/maltodextrin 100.0 1.9E-47 4.1E-52 389.0 23.9 211 220-445 3-224 (369)
127 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3E-47 6.6E-52 365.8 24.0 211 221-445 2-222 (236)
128 PRK14273 phosphate ABC transpo 100.0 4.2E-47 9E-52 368.8 25.2 217 220-445 7-239 (254)
129 cd03268 ABC_BcrA_bacitracin_re 100.0 2.2E-47 4.9E-52 359.7 22.2 202 221-437 1-208 (208)
130 PRK13536 nodulation factor exp 100.0 2E-47 4.4E-52 384.2 23.2 211 220-444 41-261 (340)
131 PRK13642 cbiO cobalt transport 100.0 4.2E-47 9.2E-52 373.1 24.8 216 220-446 4-231 (277)
132 cd03218 ABC_YhbG The ABC trans 100.0 2.6E-47 5.7E-52 365.2 22.6 211 221-444 1-222 (232)
133 TIGR01288 nodI ATP-binding ABC 100.0 3.1E-47 6.7E-52 378.7 23.7 211 220-444 4-224 (303)
134 PRK10744 pstB phosphate transp 100.0 7.7E-47 1.7E-51 368.1 26.0 219 218-445 11-245 (260)
135 PRK13648 cbiO cobalt transport 100.0 4.1E-47 8.9E-52 371.8 24.2 215 220-445 7-232 (269)
136 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.4E-47 5.1E-52 362.7 21.6 204 221-440 1-219 (220)
137 TIGR03522 GldA_ABC_ATP gliding 100.0 3.2E-47 6.9E-52 378.2 23.3 210 221-444 3-221 (301)
138 TIGR02211 LolD_lipo_ex lipopro 100.0 4.8E-47 1E-51 360.7 23.5 203 221-434 2-220 (221)
139 cd03225 ABC_cobalt_CbiO_domain 100.0 2.5E-47 5.4E-52 360.1 21.2 200 222-432 1-211 (211)
140 PRK13633 cobalt transporter AT 100.0 5.9E-47 1.3E-51 372.7 24.7 215 220-445 4-234 (280)
141 PRK10575 iron-hydroxamate tran 100.0 4.4E-47 9.6E-52 370.8 23.4 212 220-444 11-237 (265)
142 TIGR03411 urea_trans_UrtD urea 100.0 5.2E-47 1.1E-51 365.4 23.6 212 220-444 2-231 (242)
143 PRK15079 oligopeptide ABC tran 100.0 5.7E-47 1.2E-51 379.9 24.6 215 220-445 8-252 (331)
144 PRK09493 glnQ glutamine ABC tr 100.0 6.2E-47 1.3E-51 364.5 23.6 212 221-445 2-226 (240)
145 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.6E-47 5.7E-52 373.0 21.0 211 222-445 26-251 (269)
146 PRK11231 fecE iron-dicitrate t 100.0 6.4E-47 1.4E-51 367.7 23.4 211 221-444 3-227 (255)
147 cd03301 ABC_MalK_N The N-termi 100.0 3.8E-47 8.3E-52 359.3 21.2 202 221-437 1-213 (213)
148 PRK13641 cbiO cobalt transport 100.0 7.6E-47 1.7E-51 373.1 24.2 215 220-445 2-235 (287)
149 PRK14259 phosphate ABC transpo 100.0 1.3E-46 2.8E-51 368.2 25.6 218 219-445 12-254 (269)
150 TIGR02769 nickel_nikE nickel i 100.0 1.1E-46 2.4E-51 368.0 24.9 216 220-445 2-241 (265)
151 COG4555 NatA ABC-type Na+ tran 100.0 1.2E-47 2.5E-52 344.0 16.3 212 221-445 2-223 (245)
152 cd03247 ABCC_cytochrome_bd The 100.0 5.9E-47 1.3E-51 348.2 21.4 178 221-437 1-178 (178)
153 PRK11831 putative ABC transpor 100.0 8.3E-47 1.8E-51 369.6 23.6 213 220-445 7-234 (269)
154 PRK14235 phosphate transporter 100.0 1.1E-46 2.3E-51 368.4 24.4 218 218-444 17-251 (267)
155 TIGR03005 ectoine_ehuA ectoine 100.0 8.5E-47 1.8E-51 366.2 23.4 212 221-445 1-237 (252)
156 TIGR02673 FtsE cell division A 100.0 4.1E-47 8.8E-52 359.4 20.7 200 221-432 2-214 (214)
157 PRK14267 phosphate ABC transpo 100.0 1.3E-46 2.8E-51 365.1 24.5 217 220-445 4-238 (253)
158 PRK14247 phosphate ABC transpo 100.0 1.3E-46 2.9E-51 364.4 24.5 217 220-445 3-235 (250)
159 PRK13548 hmuV hemin importer A 100.0 1.9E-46 4.1E-51 364.9 25.7 212 220-444 2-230 (258)
160 PRK11607 potG putrescine trans 100.0 7.9E-47 1.7E-51 384.4 23.9 212 219-445 18-240 (377)
161 PRK13649 cbiO cobalt transport 100.0 8.2E-47 1.8E-51 371.8 23.3 215 221-445 3-235 (280)
162 COG0410 LivF ABC-type branched 100.0 9.1E-47 2E-51 347.1 21.9 221 220-446 3-228 (237)
163 PRK11124 artP arginine transpo 100.0 1.1E-46 2.5E-51 363.1 23.8 212 220-444 2-230 (242)
164 PRK11264 putative amino-acid A 100.0 2.4E-46 5.3E-51 362.5 26.0 213 220-445 3-234 (250)
165 PRK13638 cbiO cobalt transport 100.0 1.1E-46 2.4E-51 369.2 23.8 212 221-445 2-226 (271)
166 cd03292 ABC_FtsE_transporter F 100.0 6.5E-47 1.4E-51 358.0 21.3 201 221-433 1-214 (214)
167 PRK10253 iron-enterobactin tra 100.0 1.1E-46 2.4E-51 368.0 23.4 213 219-444 6-233 (265)
168 PRK10584 putative ABC transpor 100.0 1.5E-46 3.3E-51 359.0 23.8 206 220-436 6-227 (228)
169 PRK11614 livF leucine/isoleuci 100.0 1.9E-46 4.1E-51 360.5 24.4 212 220-444 5-226 (237)
170 PRK13645 cbiO cobalt transport 100.0 1.2E-46 2.7E-51 372.1 23.7 216 219-444 5-240 (289)
171 PRK10895 lipopolysaccharide AB 100.0 2E-46 4.3E-51 361.2 24.4 216 220-444 3-226 (241)
172 PRK14274 phosphate ABC transpo 100.0 1.8E-46 4E-51 365.3 24.4 217 220-445 12-244 (259)
173 TIGR03410 urea_trans_UrtE urea 100.0 1.8E-46 4E-51 358.9 24.0 210 221-442 1-219 (230)
174 PRK11308 dppF dipeptide transp 100.0 2.8E-46 6E-51 374.5 26.2 215 220-445 5-245 (327)
175 PRK13639 cbiO cobalt transport 100.0 1.3E-46 2.8E-51 369.3 23.3 213 221-445 2-227 (275)
176 PRK11247 ssuB aliphatic sulfon 100.0 2.5E-46 5.5E-51 363.2 24.5 203 220-440 12-219 (257)
177 PRK14268 phosphate ABC transpo 100.0 1.8E-46 3.9E-51 365.1 23.5 216 220-444 12-242 (258)
178 cd03235 ABC_Metallic_Cations A 100.0 7.9E-47 1.7E-51 357.3 20.3 197 222-437 1-213 (213)
179 PRK10619 histidine/lysine/argi 100.0 2E-46 4.3E-51 364.6 23.6 215 219-445 4-242 (257)
180 COG1137 YhbG ABC-type (unclass 100.0 5.3E-48 1.2E-52 345.7 11.2 214 220-446 4-230 (243)
181 cd03290 ABCC_SUR1_N The SUR do 100.0 2.9E-46 6.4E-51 354.6 23.9 210 222-432 2-218 (218)
182 PRK14240 phosphate transporter 100.0 3.3E-46 7.2E-51 361.6 24.7 217 219-444 2-234 (250)
183 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.6E-46 5.5E-51 353.2 23.2 200 221-437 1-211 (211)
184 PRK14239 phosphate transporter 100.0 2.7E-46 5.9E-51 362.6 24.0 217 220-445 5-237 (252)
185 PRK14245 phosphate ABC transpo 100.0 1.8E-46 3.8E-51 363.5 22.6 217 220-445 3-235 (250)
186 PRK14237 phosphate transporter 100.0 3.8E-46 8.2E-51 364.6 25.0 218 219-445 19-252 (267)
187 PRK14248 phosphate ABC transpo 100.0 4.4E-46 9.4E-51 364.4 25.5 217 220-445 21-253 (268)
188 PRK10070 glycine betaine trans 100.0 1.9E-46 4.2E-51 383.0 23.8 199 236-445 42-255 (400)
189 cd03257 ABC_NikE_OppD_transpor 100.0 3.8E-46 8.3E-51 356.0 24.3 207 221-437 2-228 (228)
190 PRK10908 cell division protein 100.0 3.2E-46 7E-51 355.3 23.7 203 221-435 2-217 (222)
191 PRK11022 dppD dipeptide transp 100.0 4E-46 8.7E-51 373.4 25.5 218 220-445 3-244 (326)
192 PRK11300 livG leucine/isoleuci 100.0 3.3E-46 7.2E-51 362.6 24.1 212 220-444 5-243 (255)
193 PRK10771 thiQ thiamine transpo 100.0 8.2E-46 1.8E-50 354.9 26.3 208 221-445 2-220 (232)
194 TIGR03873 F420-0_ABC_ATP propo 100.0 3.1E-46 6.7E-51 363.1 23.6 211 221-444 2-226 (256)
195 cd03246 ABCC_Protease_Secretio 100.0 2.3E-46 4.9E-51 342.8 21.3 172 221-433 1-173 (173)
196 PRK14251 phosphate ABC transpo 100.0 3.2E-46 7E-51 361.9 23.4 217 220-445 4-236 (251)
197 PRK15112 antimicrobial peptide 100.0 4.1E-46 9E-51 364.3 24.3 224 220-454 4-251 (267)
198 TIGR01188 drrA daunorubicin re 100.0 1.5E-46 3.3E-51 373.6 21.5 202 229-444 2-213 (302)
199 PRK14249 phosphate ABC transpo 100.0 5.2E-46 1.1E-50 360.4 24.8 217 220-445 4-236 (251)
200 PRK10247 putative ABC transpor 100.0 2.4E-46 5.2E-51 356.9 21.8 209 220-440 7-223 (225)
201 PRK14256 phosphate ABC transpo 100.0 7.1E-46 1.5E-50 359.7 25.2 218 219-445 3-237 (252)
202 cd03269 ABC_putative_ATPase Th 100.0 1.8E-46 3.8E-51 354.1 20.3 200 221-437 1-210 (210)
203 cd03262 ABC_HisP_GlnQ_permease 100.0 2.1E-46 4.6E-51 354.2 20.7 200 221-433 1-213 (213)
204 PRK14244 phosphate ABC transpo 100.0 2.6E-46 5.6E-51 362.6 20.8 216 221-445 6-238 (251)
205 PRK14236 phosphate transporter 100.0 8.3E-46 1.8E-50 363.1 24.5 218 219-445 24-257 (272)
206 PRK14243 phosphate transporter 100.0 1.1E-45 2.4E-50 360.7 25.0 217 220-445 10-249 (264)
207 PRK14253 phosphate ABC transpo 100.0 8.9E-46 1.9E-50 358.4 24.0 216 220-444 3-233 (249)
208 PRK14238 phosphate transporter 100.0 1.2E-45 2.6E-50 361.7 24.9 218 219-445 23-256 (271)
209 PRK14270 phosphate ABC transpo 100.0 1.3E-45 2.7E-50 357.8 24.9 217 220-445 4-236 (251)
210 PRK14262 phosphate ABC transpo 100.0 6.4E-46 1.4E-50 359.6 22.5 217 220-445 3-235 (250)
211 TIGR01978 sufC FeS assembly AT 100.0 5.9E-46 1.3E-50 358.2 21.9 211 221-443 1-233 (243)
212 PRK09984 phosphonate/organopho 100.0 1.3E-45 2.9E-50 359.9 24.6 210 220-442 4-240 (262)
213 PRK09473 oppD oligopeptide tra 100.0 1.1E-45 2.4E-50 370.7 24.6 218 220-445 12-252 (330)
214 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-45 2.5E-50 355.1 23.7 209 221-444 1-220 (237)
215 PRK14254 phosphate ABC transpo 100.0 1.6E-45 3.5E-50 363.0 25.4 219 218-445 37-270 (285)
216 PRK14261 phosphate ABC transpo 100.0 9.7E-46 2.1E-50 359.0 23.4 217 220-445 6-238 (253)
217 cd03300 ABC_PotA_N PotA is an 100.0 5.7E-46 1.2E-50 356.0 21.4 210 221-445 1-221 (232)
218 COG0411 LivG ABC-type branched 100.0 7.6E-47 1.7E-51 350.2 14.7 214 220-446 4-241 (250)
219 PRK15093 antimicrobial peptide 100.0 1.1E-45 2.4E-50 371.2 24.4 221 220-451 3-256 (330)
220 TIGR03415 ABC_choXWV_ATP choli 100.0 9.7E-46 2.1E-50 375.3 23.8 207 226-445 30-255 (382)
221 TIGR01277 thiQ thiamine ABC tr 100.0 1.3E-45 2.9E-50 348.9 22.8 201 221-438 1-212 (213)
222 PRK13547 hmuV hemin importer A 100.0 1.9E-45 4E-50 360.0 24.5 211 221-444 2-244 (272)
223 PRK14241 phosphate transporter 100.0 1.9E-45 4.1E-50 358.0 23.9 216 220-444 4-242 (258)
224 PRK11144 modC molybdate transp 100.0 1.5E-45 3.2E-50 373.3 24.1 210 221-446 2-220 (352)
225 PRK14271 phosphate ABC transpo 100.0 2.5E-45 5.5E-50 360.2 25.0 217 220-445 21-252 (276)
226 PRK14265 phosphate ABC transpo 100.0 3.2E-45 6.9E-50 359.2 25.3 218 219-445 19-259 (274)
227 COG4175 ProV ABC-type proline/ 100.0 9.1E-46 2E-50 352.0 20.6 216 220-446 4-256 (386)
228 PRK14260 phosphate ABC transpo 100.0 2.1E-45 4.6E-50 357.8 23.8 218 219-445 6-244 (259)
229 PRK14275 phosphate ABC transpo 100.0 2.7E-45 5.8E-50 361.8 24.0 218 219-445 38-271 (286)
230 PRK14252 phosphate ABC transpo 100.0 2.6E-45 5.7E-50 358.3 23.6 218 218-444 14-249 (265)
231 PRK14263 phosphate ABC transpo 100.0 3E-45 6.6E-50 356.9 24.0 217 220-445 8-246 (261)
232 PRK14266 phosphate ABC transpo 100.0 2.9E-45 6.3E-50 355.0 23.3 217 220-445 3-235 (250)
233 TIGR03740 galliderm_ABC gallid 100.0 6.1E-45 1.3E-49 346.8 24.6 204 221-441 1-210 (223)
234 PRK14264 phosphate ABC transpo 100.0 5E-45 1.1E-49 363.0 25.0 218 218-444 43-289 (305)
235 PRK11248 tauB taurine transpor 100.0 4E-45 8.8E-50 354.8 23.5 201 221-439 2-215 (255)
236 cd03299 ABC_ModC_like Archeal 100.0 3.7E-45 7.9E-50 351.1 22.8 209 221-445 1-220 (235)
237 PRK14272 phosphate ABC transpo 100.0 4E-45 8.7E-50 354.4 23.3 217 220-445 4-237 (252)
238 PRK11701 phnK phosphonate C-P 100.0 3.7E-45 8E-50 355.9 23.0 217 220-445 6-242 (258)
239 PRK10418 nikD nickel transport 100.0 7.7E-45 1.7E-49 352.9 24.8 228 220-460 4-248 (254)
240 PRK14258 phosphate ABC transpo 100.0 5.2E-45 1.1E-49 355.4 23.6 218 219-445 6-246 (261)
241 cd03228 ABCC_MRP_Like The MRP 100.0 4.2E-45 9.2E-50 333.7 21.1 171 221-432 1-171 (171)
242 TIGR02982 heterocyst_DevA ABC 100.0 3E-45 6.5E-50 348.2 20.7 202 221-433 2-219 (220)
243 PRK14255 phosphate ABC transpo 100.0 1E-44 2.3E-49 351.5 24.4 217 220-445 5-237 (252)
244 TIGR02142 modC_ABC molybdenum 100.0 5.5E-45 1.2E-49 369.6 23.3 206 225-445 4-222 (354)
245 PRK10419 nikE nickel transport 100.0 1E-44 2.3E-49 354.5 24.4 224 220-450 3-247 (268)
246 PRK14246 phosphate ABC transpo 100.0 1.9E-44 4.1E-49 350.5 24.2 217 220-445 10-242 (257)
247 cd03297 ABC_ModC_molybdenum_tr 100.0 1.1E-44 2.4E-49 342.9 21.4 197 225-437 5-214 (214)
248 PRK09544 znuC high-affinity zi 100.0 3.4E-44 7.3E-49 347.3 24.5 208 220-453 4-217 (251)
249 PRK15056 manganese/iron transp 100.0 2.6E-44 5.5E-49 352.6 23.9 209 220-444 6-230 (272)
250 COG4178 ABC-type uncharacteriz 100.0 8.6E-42 1.9E-46 355.9 44.0 409 2-429 152-587 (604)
251 COG1123 ATPase components of v 100.0 1.7E-44 3.7E-49 371.8 22.8 223 219-452 279-528 (539)
252 cd03229 ABC_Class3 This class 100.0 2.2E-44 4.7E-49 331.2 21.2 172 221-432 1-178 (178)
253 cd03230 ABC_DR_subfamily_A Thi 100.0 1.9E-44 4.1E-49 330.1 20.7 170 221-433 1-173 (173)
254 TIGR02323 CP_lyasePhnK phospho 100.0 4.5E-44 9.7E-49 347.3 24.4 216 220-444 3-238 (253)
255 COG4615 PvdE ABC-type sideroph 100.0 1.7E-42 3.8E-47 337.2 35.3 417 1-437 108-530 (546)
256 cd03234 ABCG_White The White s 100.0 2.2E-44 4.7E-49 343.7 21.6 203 221-437 4-226 (226)
257 COG4559 ABC-type hemin transpo 100.0 1.5E-44 3.4E-49 326.3 19.1 212 221-445 2-231 (259)
258 COG0444 DppD ABC-type dipeptid 100.0 2.6E-44 5.6E-49 347.0 21.3 223 221-454 2-255 (316)
259 cd03233 ABC_PDR_domain1 The pl 100.0 3.7E-44 7.9E-49 336.3 21.2 190 220-437 3-202 (202)
260 TIGR03608 L_ocin_972_ABC putat 100.0 2.3E-44 5E-49 338.5 19.1 193 223-428 1-206 (206)
261 PRK15439 autoinducer 2 ABC tra 100.0 6.7E-44 1.4E-48 378.9 24.9 212 220-444 11-229 (510)
262 cd03214 ABC_Iron-Siderophores_ 100.0 3.8E-44 8.2E-49 330.2 20.0 177 222-437 1-180 (180)
263 CHL00131 ycf16 sulfate ABC tra 100.0 8.8E-44 1.9E-48 345.0 23.3 211 220-442 7-239 (252)
264 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.9E-44 1.7E-48 333.5 22.1 185 221-443 1-192 (200)
265 cd03213 ABCG_EPDR ABCG transpo 100.0 4.8E-44 1E-48 333.4 19.7 182 220-437 3-194 (194)
266 PRK03695 vitamin B12-transport 100.0 1.4E-43 2.9E-48 342.9 23.0 205 222-444 2-222 (248)
267 PRK10762 D-ribose transporter 100.0 6.9E-44 1.5E-48 378.3 22.8 211 220-443 4-229 (501)
268 PRK13549 xylose transporter AT 100.0 8.4E-44 1.8E-48 378.1 23.5 211 220-443 5-231 (506)
269 PRK09700 D-allose transporter 100.0 6.2E-44 1.3E-48 379.6 22.2 211 220-443 5-233 (510)
270 PRK10261 glutathione transport 100.0 1.8E-43 3.9E-48 383.3 25.6 215 220-445 313-554 (623)
271 cd03215 ABC_Carb_Monos_II This 100.0 8.3E-44 1.8E-48 328.5 19.6 172 220-433 4-182 (182)
272 cd03232 ABC_PDR_domain2 The pl 100.0 7E-44 1.5E-48 331.7 19.1 181 220-437 3-192 (192)
273 cd03223 ABCD_peroxisomal_ALDP 100.0 1.9E-43 4.2E-48 321.2 20.5 164 221-432 1-164 (166)
274 PRK09580 sufC cysteine desulfu 100.0 5.2E-43 1.1E-47 338.7 24.4 210 221-442 2-233 (248)
275 cd03267 ABC_NatA_like Similar 100.0 1.6E-43 3.5E-48 339.9 20.5 191 235-437 34-236 (236)
276 cd03231 ABC_CcmA_heme_exporter 100.0 3.4E-43 7.3E-48 329.5 21.9 194 221-428 1-198 (201)
277 PRK10938 putative molybdenum t 100.0 2.7E-43 5.8E-48 373.0 23.6 211 220-444 3-224 (490)
278 TIGR01184 ntrCD nitrate transp 100.0 2.3E-43 5E-48 337.5 20.7 190 238-443 1-203 (230)
279 COG1123 ATPase components of v 100.0 2.4E-43 5.3E-48 363.2 22.1 217 220-445 5-245 (539)
280 PRK13538 cytochrome c biogenes 100.0 4.8E-43 1E-47 329.3 21.0 194 221-428 2-202 (204)
281 TIGR02770 nickel_nikD nickel i 100.0 4.4E-43 9.5E-48 335.6 20.9 199 237-445 1-216 (230)
282 cd03216 ABC_Carb_Monos_I This 100.0 9.8E-43 2.1E-47 315.6 22.0 159 221-435 1-162 (163)
283 PRK10982 galactose/methyl gala 100.0 5E-43 1.1E-47 370.9 21.9 212 223-443 1-222 (491)
284 PRK13540 cytochrome c biogenes 100.0 6.2E-43 1.4E-47 327.5 20.0 193 221-427 2-198 (200)
285 PRK11288 araG L-arabinose tran 100.0 8.5E-43 1.9E-47 369.9 23.0 207 220-439 4-224 (501)
286 COG4598 HisP ABC-type histidin 100.0 1.3E-43 2.9E-48 312.1 13.6 213 220-445 6-242 (256)
287 COG4619 ABC-type uncharacteriz 100.0 3.3E-43 7.1E-48 306.5 15.8 194 230-433 11-212 (223)
288 PRK15134 microcin C ABC transp 100.0 1.2E-42 2.6E-47 371.2 23.6 217 220-444 5-246 (529)
289 PRK15134 microcin C ABC transp 100.0 6.6E-43 1.4E-47 373.1 21.6 214 220-445 275-516 (529)
290 COG4181 Predicted ABC-type tra 100.0 6.8E-43 1.5E-47 305.4 17.5 206 220-436 6-227 (228)
291 PRK13543 cytochrome c biogenes 100.0 1.4E-42 3.1E-47 328.4 21.3 195 220-430 11-212 (214)
292 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-42 2.5E-47 369.1 22.6 210 221-443 2-229 (500)
293 PRK10261 glutathione transport 100.0 1.5E-42 3.2E-47 376.2 22.7 217 220-444 12-258 (623)
294 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-42 2.6E-47 370.5 21.3 219 220-444 279-517 (520)
295 PRK13539 cytochrome c biogenes 100.0 3E-42 6.6E-47 324.5 21.6 194 220-430 2-200 (207)
296 TIGR01189 ccmA heme ABC export 100.0 2.7E-42 5.8E-47 322.7 19.0 192 221-427 1-197 (198)
297 PRK13549 xylose transporter AT 100.0 2.1E-42 4.5E-47 367.4 20.5 217 220-443 259-493 (506)
298 TIGR01257 rim_protein retinal- 100.0 4.2E-42 9.1E-47 400.2 24.4 215 219-445 927-1150(2272)
299 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-42 6.8E-47 367.3 21.0 211 221-444 1-258 (520)
300 COG4608 AppF ABC-type oligopep 100.0 3.8E-42 8.2E-47 325.4 19.1 185 220-444 4-199 (268)
301 COG4604 CeuD ABC-type enteroch 100.0 8E-43 1.7E-47 311.7 13.3 212 221-445 2-226 (252)
302 PRK13546 teichoic acids export 100.0 1.6E-41 3.5E-46 330.6 23.3 209 220-452 4-240 (264)
303 COG4172 ABC-type uncharacteriz 100.0 1.5E-41 3.3E-46 331.8 22.7 216 218-445 274-517 (534)
304 TIGR02324 CP_lyasePhnL phospho 100.0 9.1E-42 2E-46 325.1 20.8 198 221-428 2-222 (224)
305 PRK09700 D-allose transporter 100.0 4.8E-42 1E-46 365.1 20.8 211 220-441 265-495 (510)
306 PRK10535 macrolide transporter 100.0 2E-41 4.3E-46 368.7 25.7 213 220-443 4-231 (648)
307 COG4161 ArtP ABC-type arginine 100.0 4.8E-42 1E-46 297.3 15.6 212 220-444 2-230 (242)
308 COG1129 MglA ABC-type sugar tr 100.0 2.6E-41 5.6E-46 346.1 23.8 211 220-439 8-229 (500)
309 TIGR01257 rim_protein retinal- 100.0 1.6E-41 3.5E-46 395.4 24.9 215 219-445 1936-2160(2272)
310 TIGR01166 cbiO cobalt transpor 100.0 5.4E-42 1.2E-46 318.5 16.9 173 235-418 5-189 (190)
311 TIGR03771 anch_rpt_ABC anchore 100.0 9.7E-42 2.1E-46 324.8 18.6 186 243-445 1-202 (223)
312 TIGR02633 xylG D-xylose ABC tr 100.0 1.4E-41 3E-46 360.8 20.3 216 220-442 257-490 (500)
313 COG4152 ABC-type uncharacteriz 100.0 7.2E-42 1.6E-46 314.9 15.5 214 220-446 2-221 (300)
314 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.6E-41 5.7E-46 322.0 19.7 193 221-437 23-224 (224)
315 PRK13545 tagH teichoic acids e 100.0 9.1E-41 2E-45 345.5 24.4 206 220-449 21-237 (549)
316 PLN03211 ABC transporter G-25; 100.0 1.2E-40 2.6E-45 361.3 25.5 198 235-443 81-295 (659)
317 COG4525 TauB ABC-type taurine 100.0 1.9E-41 4E-46 302.4 15.4 205 220-440 3-220 (259)
318 PRK13541 cytochrome c biogenes 100.0 4.7E-41 1E-45 313.5 18.8 188 221-426 2-193 (195)
319 PRK10762 D-ribose transporter 100.0 3.2E-41 7E-46 357.9 20.0 210 220-443 257-483 (501)
320 PRK11288 araG L-arabinose tran 100.0 4.4E-41 9.5E-46 356.9 20.6 211 220-443 257-484 (501)
321 COG4148 ModC ABC-type molybdat 100.0 2.8E-41 6.1E-46 316.3 16.7 195 240-445 16-219 (352)
322 PRK15064 ABC transporter ATP-b 100.0 1.8E-40 3.8E-45 354.6 23.5 201 219-445 318-526 (530)
323 PRK15064 ABC transporter ATP-b 100.0 2.5E-40 5.4E-45 353.4 23.3 207 221-444 2-242 (530)
324 COG3845 ABC-type uncharacteriz 100.0 2E-40 4.4E-45 333.1 20.3 210 220-438 4-223 (501)
325 PRK15439 autoinducer 2 ABC tra 100.0 1.5E-40 3.2E-45 353.4 19.3 210 220-443 268-491 (510)
326 TIGR01187 potA spermidine/putr 100.0 1.8E-40 3.8E-45 332.9 18.4 180 253-445 1-191 (325)
327 PRK11819 putative ABC transpor 100.0 5.7E-40 1.2E-44 352.2 21.6 208 220-444 6-250 (556)
328 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.9E-40 1.5E-44 316.1 19.7 192 228-443 1-206 (246)
329 TIGR00956 3a01205 Pleiotropic 100.0 7.6E-40 1.6E-44 380.0 23.5 211 220-441 759-990 (1394)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.9E-40 1.9E-44 350.5 21.6 208 220-444 4-248 (552)
331 PRK10982 galactose/methyl gala 100.0 9.2E-40 2E-44 346.0 20.7 212 220-442 250-478 (491)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.9E-39 4E-44 288.0 19.2 143 221-432 1-144 (144)
333 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.2E-40 9.1E-45 318.9 15.8 200 224-437 4-220 (255)
334 PRK15177 Vi polysaccharide exp 100.0 1.2E-39 2.5E-44 308.2 18.4 185 237-445 2-193 (213)
335 TIGR00955 3a01204 The Eye Pigm 100.0 6.8E-40 1.5E-44 355.0 18.4 202 234-443 37-255 (617)
336 PRK10938 putative molybdenum t 100.0 8.3E-40 1.8E-44 346.4 18.7 206 219-437 259-485 (490)
337 COG1119 ModF ABC-type molybden 100.0 1.3E-38 2.9E-43 295.3 20.4 207 219-438 30-256 (257)
338 PRK10636 putative ABC transpor 100.0 4.1E-38 8.8E-43 341.9 23.5 199 219-443 311-516 (638)
339 PRK11819 putative ABC transpor 100.0 4.4E-38 9.5E-43 337.6 23.1 201 219-444 323-533 (556)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.1E-38 1.1E-42 336.9 23.5 200 219-443 321-530 (552)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 2.6E-38 5.7E-43 289.0 17.3 151 224-440 4-159 (177)
342 COG1101 PhnK ABC-type uncharac 100.0 2.2E-38 4.8E-43 287.0 16.4 217 222-440 3-234 (263)
343 PLN03073 ABC transporter F fam 100.0 6.3E-38 1.4E-42 342.0 23.3 198 219-442 507-712 (718)
344 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.7E-38 1.7E-42 281.7 19.8 154 223-432 2-157 (157)
345 COG4172 ABC-type uncharacteriz 100.0 4.8E-38 1E-42 307.3 19.3 224 220-451 6-255 (534)
346 COG4674 Uncharacterized ABC-ty 100.0 2.7E-38 5.9E-43 282.1 15.6 213 220-445 5-236 (249)
347 PRK11147 ABC transporter ATPas 100.0 1.4E-37 3.1E-42 338.2 24.0 198 220-443 319-527 (635)
348 PRK13409 putative ATPase RIL; 100.0 7.9E-38 1.7E-42 335.5 21.7 191 220-438 340-536 (590)
349 COG4167 SapF ABC-type antimicr 100.0 4E-38 8.6E-43 278.2 15.7 227 221-457 5-254 (267)
350 PRK10636 putative ABC transpor 100.0 2.7E-37 5.9E-42 335.5 23.9 207 221-444 2-236 (638)
351 KOG0060 Long-chain acyl-CoA tr 100.0 1.3E-35 2.7E-40 301.8 32.7 414 2-430 186-641 (659)
352 PLN03140 ABC transporter G fam 100.0 1.6E-36 3.4E-41 351.5 24.6 211 220-440 867-1106(1470)
353 cd03238 ABC_UvrA The excision 100.0 9.9E-37 2.1E-41 278.4 17.1 155 235-432 8-165 (176)
354 PRK11147 ABC transporter ATPas 100.0 3.1E-36 6.6E-41 327.7 23.7 206 220-444 3-243 (635)
355 COG0396 sufC Cysteine desulfur 100.0 7.8E-36 1.7E-40 273.7 21.1 213 220-444 3-233 (251)
356 PRK13409 putative ATPase RIL; 100.0 4.3E-37 9.4E-42 329.8 14.3 193 224-431 77-287 (590)
357 COG4136 ABC-type uncharacteriz 100.0 4.1E-36 8.9E-41 257.5 14.5 194 220-428 2-207 (213)
358 TIGR00956 3a01205 Pleiotropic 100.0 3.3E-36 7.2E-41 349.7 18.5 200 235-442 74-298 (1394)
359 COG1134 TagH ABC-type polysacc 100.0 2.3E-35 4.9E-40 274.1 18.2 188 235-444 40-236 (249)
360 COG4586 ABC-type uncharacteriz 100.0 5.3E-36 1.2E-40 280.3 12.7 207 236-450 38-252 (325)
361 PLN03073 ABC transporter F fam 100.0 4.1E-35 9E-40 320.0 19.9 220 219-444 176-431 (718)
362 COG0488 Uup ATPase components 100.0 1.2E-34 2.6E-39 304.1 21.8 207 220-444 3-240 (530)
363 PLN03140 ABC transporter G fam 100.0 2.3E-35 4.9E-40 341.9 16.9 206 235-443 178-426 (1470)
364 COG4107 PhnK ABC-type phosphon 100.0 2.9E-34 6.2E-39 251.9 17.2 226 220-453 6-251 (258)
365 KOG0061 Transporter, ABC super 100.0 2.3E-34 5.1E-39 309.4 17.1 215 219-443 24-259 (613)
366 PF00005 ABC_tran: ABC transpo 100.0 1.6E-34 3.6E-39 253.6 11.7 136 238-386 1-137 (137)
367 COG0488 Uup ATPase components 100.0 1.9E-32 4.1E-37 287.4 23.9 202 218-444 319-525 (530)
368 COG4133 CcmA ABC-type transpor 100.0 1.6E-33 3.5E-38 250.8 12.8 186 221-420 3-194 (209)
369 cd03270 ABC_UvrA_I The excisio 100.0 1.2E-32 2.6E-37 262.5 17.5 190 235-437 8-226 (226)
370 KOG0059 Lipid exporter ABCA1 a 100.0 4.3E-33 9.3E-38 311.6 15.6 215 219-445 563-788 (885)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 2.7E-32 5.9E-37 254.5 12.2 164 239-430 14-190 (197)
372 KOG0064 Peroxisomal long-chain 100.0 1.2E-29 2.6E-34 255.0 30.8 411 2-428 221-681 (728)
373 cd03271 ABC_UvrA_II The excisi 100.0 3.3E-31 7.2E-36 256.1 15.5 192 237-439 10-261 (261)
374 COG4778 PhnL ABC-type phosphon 100.0 1.3E-31 2.8E-36 234.4 10.9 201 220-430 4-227 (235)
375 COG4138 BtuD ABC-type cobalami 100.0 6.5E-32 1.4E-36 237.2 5.7 207 221-445 4-222 (248)
376 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.1E-30 4.6E-35 249.9 13.7 192 220-429 3-234 (243)
377 cd03279 ABC_sbcCD SbcCD and ot 100.0 3.8E-30 8.3E-35 243.3 13.5 190 220-432 5-210 (213)
378 COG1129 MglA ABC-type sugar tr 100.0 2.7E-28 5.8E-33 250.4 19.0 215 220-441 263-487 (500)
379 cd03273 ABC_SMC2_euk Eukaryoti 100.0 9.1E-29 2E-33 239.7 14.1 181 248-429 25-242 (251)
380 cd03240 ABC_Rad50 The catalyti 100.0 2.3E-28 5E-33 229.3 13.4 163 241-430 16-197 (204)
381 KOG0927 Predicted transporter 100.0 7.1E-29 1.5E-33 251.1 9.6 197 219-439 388-591 (614)
382 cd03274 ABC_SMC4_euk Eukaryoti 100.0 4.6E-29 1E-33 235.3 6.6 181 220-430 5-204 (212)
383 PRK00349 uvrA excinuclease ABC 99.9 7.1E-27 1.5E-31 259.4 17.9 101 346-446 818-929 (943)
384 PRK00635 excinuclease ABC subu 99.9 2.2E-26 4.8E-31 265.3 21.4 211 220-445 600-907 (1809)
385 KOG0065 Pleiotropic drug resis 99.9 2.3E-27 5E-32 261.4 11.1 199 233-441 802-1018(1391)
386 COG3845 ABC-type uncharacteriz 99.9 1.7E-25 3.6E-30 225.6 20.3 214 218-441 255-489 (501)
387 COG4170 SapD ABC-type antimicr 99.9 1.2E-25 2.6E-30 203.2 14.6 217 221-445 4-249 (330)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.6E-26 5.7E-31 221.9 10.9 202 220-430 3-233 (247)
389 KOG0062 ATPase component of AB 99.9 3.5E-25 7.6E-30 223.2 15.1 195 218-435 360-559 (582)
390 KOG0927 Predicted transporter 99.9 4.2E-25 9.2E-30 223.8 15.2 222 219-444 74-309 (614)
391 TIGR00630 uvra excinuclease AB 99.9 1.7E-24 3.8E-29 240.0 19.3 97 346-442 816-923 (924)
392 KOG0066 eIF2-interacting prote 99.9 9.7E-25 2.1E-29 215.4 14.1 191 219-433 585-779 (807)
393 KOG0062 ATPase component of AB 99.9 4.9E-25 1.1E-29 222.2 11.6 200 218-444 78-285 (582)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.3E-25 9.3E-30 206.2 10.2 172 238-432 12-192 (198)
395 COG1245 Predicted ATPase, RNas 99.9 3.5E-24 7.6E-29 213.0 14.3 168 238-430 352-531 (591)
396 KOG2355 Predicted ABC-type tra 99.9 3.7E-22 8.1E-27 180.1 17.3 211 218-442 11-235 (291)
397 cd03239 ABC_SMC_head The struc 99.9 2.8E-22 6E-27 184.0 13.3 85 340-430 83-172 (178)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 5.4E-22 1.2E-26 185.7 11.4 145 238-437 17-172 (200)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1E-21 2.3E-26 185.3 11.3 181 238-432 14-211 (213)
400 cd03241 ABC_RecN RecN ATPase i 99.9 3.2E-21 6.9E-26 189.4 13.2 77 357-433 170-250 (276)
401 KOG0065 Pleiotropic drug resis 99.9 1.3E-21 2.9E-26 216.2 10.9 199 235-443 128-350 (1391)
402 COG1245 Predicted ATPase, RNas 99.8 1.4E-21 3E-26 194.7 8.7 185 225-429 79-287 (591)
403 COG0178 UvrA Excinuclease ATPa 99.8 1.4E-19 3.1E-24 191.2 17.7 104 346-449 810-924 (935)
404 cd03227 ABC_Class2 ABC-type Cl 99.8 2.1E-20 4.6E-25 169.1 9.8 136 241-430 14-155 (162)
405 cd01128 rho_factor Transcripti 99.8 2.1E-20 4.6E-25 179.7 9.9 198 243-454 11-227 (249)
406 COG2401 ABC-type ATPase fused 99.8 7E-20 1.5E-24 180.6 13.6 177 236-434 397-588 (593)
407 PRK00635 excinuclease ABC subu 99.8 1.4E-19 3.1E-24 209.4 15.7 209 237-446 1505-1798(1809)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.8 6.8E-20 1.5E-24 174.0 10.1 152 235-438 17-175 (222)
409 cd03243 ABC_MutS_homologs The 99.8 2.3E-19 5E-24 168.2 7.7 154 240-442 21-177 (202)
410 cd03242 ABC_RecF RecF is a rec 99.8 1.4E-18 3E-23 170.2 13.2 75 356-433 182-269 (270)
411 cd03283 ABC_MutS-like MutS-lik 99.8 1.9E-18 4E-23 161.5 10.4 143 236-428 15-163 (199)
412 KOG0066 eIF2-interacting prote 99.8 6.8E-19 1.5E-23 174.3 6.2 206 220-439 264-494 (807)
413 TIGR00630 uvra excinuclease AB 99.7 1.6E-17 3.4E-22 184.8 11.6 99 346-444 475-583 (924)
414 TIGR02858 spore_III_AA stage I 99.7 3.7E-17 8.1E-22 158.9 12.6 142 249-443 112-268 (270)
415 PRK00349 uvrA excinuclease ABC 99.7 1.7E-17 3.6E-22 184.9 11.1 100 346-445 477-586 (943)
416 KOG0063 RNAse L inhibitor, ABC 99.7 7.8E-17 1.7E-21 159.6 11.8 192 228-444 343-548 (592)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.4E-16 3E-21 149.3 11.1 138 235-421 16-156 (204)
418 cd00820 PEPCK_HprK Phosphoenol 99.7 4E-17 8.8E-22 135.5 6.1 75 236-318 3-77 (107)
419 cd03284 ABC_MutS1 MutS1 homolo 99.7 2.7E-16 5.9E-21 148.8 9.8 156 235-443 18-180 (216)
420 TIGR00606 rad50 rad50. This fa 99.6 3.9E-15 8.5E-20 174.1 14.4 119 307-429 1153-1289(1311)
421 PF00664 ABC_membrane: ABC tra 99.6 1.2E-13 2.6E-18 132.4 22.4 171 1-171 101-274 (275)
422 PF02463 SMC_N: RecF/RecN/SMC 99.6 3.7E-15 8E-20 141.5 10.8 73 357-429 136-212 (220)
423 PRK00064 recF recombination pr 99.6 3.3E-14 7.1E-19 144.8 15.1 76 356-433 272-359 (361)
424 cd03281 ABC_MSH5_euk MutS5 hom 99.5 3.9E-14 8.4E-19 133.8 11.6 134 237-422 18-160 (213)
425 PRK07721 fliI flagellum-specif 99.5 2.2E-13 4.8E-18 140.8 16.3 174 236-441 147-340 (438)
426 PHA02562 46 endonuclease subun 99.5 1.6E-14 3.4E-19 156.0 7.4 91 342-433 447-555 (562)
427 smart00534 MUTSac ATPase domai 99.5 2.8E-14 6.2E-19 131.9 6.6 68 356-424 60-130 (185)
428 TIGR01069 mutS2 MutS2 family p 99.5 7.3E-14 1.6E-18 154.1 9.5 145 220-420 295-449 (771)
429 TIGR00634 recN DNA repair prot 99.4 2.6E-13 5.6E-18 146.1 9.5 77 356-432 439-519 (563)
430 PTZ00132 GTP-binding nuclear p 99.4 1.2E-13 2.7E-18 130.5 6.2 43 361-403 156-203 (215)
431 KOG0063 RNAse L inhibitor, ABC 99.4 1.1E-13 2.5E-18 137.4 5.6 173 246-429 98-287 (592)
432 PRK10869 recombination and rep 99.4 9E-13 2E-17 141.0 10.2 76 357-432 430-509 (553)
433 cd03287 ABC_MSH3_euk MutS3 hom 99.4 4E-12 8.6E-17 120.5 11.2 138 235-421 18-159 (222)
434 PRK13695 putative NTPase; Prov 99.3 2.2E-12 4.8E-17 117.9 5.6 78 356-436 77-156 (174)
435 PRK00409 recombination and DNA 99.3 7.9E-12 1.7E-16 138.4 10.6 77 356-434 389-468 (782)
436 COG0178 UvrA Excinuclease ATPa 99.3 1.8E-11 3.9E-16 130.5 11.7 96 351-446 475-579 (935)
437 PRK08533 flagellar accessory p 99.3 3.1E-11 6.7E-16 115.4 12.3 158 221-429 8-184 (230)
438 TIGR02788 VirB11 P-type DNA tr 99.3 8.4E-12 1.8E-16 124.5 7.4 143 241-443 137-280 (308)
439 TIGR00618 sbcc exonuclease Sbc 99.2 1.8E-11 4E-16 140.8 10.1 78 354-431 947-1036(1042)
440 cd01124 KaiC KaiC is a circadi 99.2 6.6E-11 1.4E-15 109.0 10.2 80 351-430 65-164 (187)
441 PRK06793 fliI flagellum-specif 99.2 1.1E-10 2.3E-15 120.1 12.2 168 219-437 129-304 (432)
442 PRK01156 chromosome segregatio 99.2 4.2E-11 9.1E-16 136.2 10.0 76 354-429 798-883 (895)
443 PRK03918 chromosome segregatio 99.2 4.1E-11 8.9E-16 136.1 9.6 76 355-430 786-868 (880)
444 TIGR03238 dnd_assoc_3 dnd syst 99.2 1.2E-11 2.7E-16 126.7 4.8 67 236-305 20-87 (504)
445 TIGR02168 SMC_prok_B chromosom 99.1 6.5E-11 1.4E-15 138.1 8.3 77 353-429 1085-1165(1179)
446 cd03286 ABC_MSH6_euk MutS6 hom 99.1 4.2E-10 9.1E-15 106.4 11.8 138 235-421 17-158 (218)
447 cd01120 RecA-like_NTPases RecA 99.1 5.6E-10 1.2E-14 99.6 10.6 129 250-419 1-140 (165)
448 PF13304 AAA_21: AAA domain; P 99.1 1.7E-10 3.7E-15 109.9 7.6 64 356-419 235-302 (303)
449 PRK13830 conjugal transfer pro 99.1 1.1E-09 2.3E-14 122.7 14.5 68 372-439 649-728 (818)
450 TIGR02169 SMC_prok_A chromosom 99.1 3E-10 6.5E-15 132.7 9.4 75 356-430 1073-1151(1164)
451 cd01131 PilT Pilus retraction 99.0 4.2E-10 9.1E-15 105.2 7.7 118 250-428 3-121 (198)
452 PRK10246 exonuclease subunit S 99.0 7.8E-10 1.7E-14 127.0 9.7 78 353-430 945-1032(1047)
453 smart00382 AAA ATPases associa 99.0 2E-08 4.2E-13 86.4 14.7 117 247-415 1-125 (148)
454 COG3910 Predicted ATPase [Gene 98.9 3.9E-09 8.5E-14 95.0 9.2 77 356-433 128-206 (233)
455 PRK02224 chromosome segregatio 98.9 1.6E-09 3.6E-14 123.1 8.7 76 356-431 780-869 (880)
456 PRK06067 flagellar accessory p 98.9 1.6E-08 3.4E-13 97.0 13.8 74 357-430 100-187 (234)
457 PRK00300 gmk guanylate kinase; 98.9 3.7E-09 8E-14 99.1 8.4 66 246-316 3-80 (205)
458 PRK06002 fliI flagellum-specif 98.9 2.9E-09 6.3E-14 109.7 7.5 86 218-305 137-229 (450)
459 TIGR00767 rho transcription te 98.8 1.3E-08 2.8E-13 103.2 9.9 82 185-275 103-195 (415)
460 TIGR02655 circ_KaiC circadian 98.8 8.2E-10 1.8E-14 116.9 -0.7 156 244-429 17-190 (484)
461 PF09818 ABC_ATPase: Predicted 98.8 5.4E-08 1.2E-12 98.8 11.7 171 226-433 227-416 (448)
462 PRK06995 flhF flagellar biosyn 98.7 9.6E-09 2.1E-13 107.2 4.4 61 238-317 246-306 (484)
463 PRK07196 fliI flagellum-specif 98.7 1.3E-08 2.9E-13 104.8 4.5 81 236-317 144-234 (434)
464 PRK13891 conjugal transfer pro 98.7 4.9E-07 1.1E-11 101.9 16.9 54 368-421 680-735 (852)
465 TIGR00611 recf recF protein. A 98.7 2.9E-08 6.4E-13 101.2 6.5 62 357-420 275-345 (365)
466 TIGR01026 fliI_yscN ATPase Fli 98.6 3.1E-07 6.8E-12 95.4 12.9 176 236-442 152-346 (440)
467 cd01130 VirB11-like_ATPase Typ 98.6 2.5E-08 5.4E-13 92.2 4.1 66 237-305 14-79 (186)
468 cd01125 repA Hexameric Replica 98.6 7.5E-08 1.6E-12 92.6 7.0 44 372-416 108-159 (239)
469 TIGR01420 pilT_fam pilus retra 98.6 1.5E-07 3.3E-12 95.4 8.6 119 245-424 119-238 (343)
470 TIGR02524 dot_icm_DotB Dot/Icm 98.6 8.2E-08 1.8E-12 97.5 6.4 87 246-333 132-233 (358)
471 PRK14079 recF recombination pr 98.6 1.3E-07 2.8E-12 96.0 7.8 77 357-438 263-348 (349)
472 PRK01889 GTPase RsgA; Reviewed 98.5 5.8E-08 1.3E-12 98.8 4.4 79 237-318 184-262 (356)
473 PRK10733 hflB ATP-dependent me 98.5 8.5E-09 1.9E-13 112.6 -1.9 28 244-273 183-210 (644)
474 cd02023 UMPK Uridine monophosp 98.5 4.7E-08 1E-12 91.2 3.2 111 250-390 1-113 (198)
475 PRK10078 ribose 1,5-bisphospho 98.5 1.2E-07 2.5E-12 87.7 5.0 55 248-305 2-56 (186)
476 PRK08149 ATP synthase SpaL; Va 98.5 1.4E-07 2.9E-12 97.3 5.4 68 236-304 140-214 (428)
477 TIGR02680 conserved hypothetic 98.4 3.1E-07 6.6E-12 108.0 7.8 62 354-417 1244-1317(1353)
478 COG0419 SbcC ATPase involved i 98.4 7.6E-07 1.6E-11 101.5 9.5 78 354-431 812-898 (908)
479 PRK05399 DNA mismatch repair p 98.4 2E-06 4.4E-11 96.8 12.1 66 358-424 667-738 (854)
480 PRK13898 type IV secretion sys 98.4 8.4E-06 1.8E-10 91.8 16.7 49 371-419 638-688 (800)
481 PLN03210 Resistant to P. syrin 98.4 1.7E-06 3.6E-11 101.1 10.9 43 241-283 200-243 (1153)
482 PRK09825 idnK D-gluconate kina 98.3 4.5E-07 9.7E-12 83.1 4.3 53 247-305 2-55 (176)
483 TIGR00235 udk uridine kinase. 98.3 2.9E-07 6.3E-12 86.5 2.9 29 246-274 4-32 (207)
484 TIGR02322 phosphon_PhnN phosph 98.3 1E-06 2.2E-11 80.7 6.4 62 248-310 1-78 (179)
485 PLN02796 D-glycerate 3-kinase 98.3 2.8E-07 6.1E-12 92.1 2.3 61 236-296 80-151 (347)
486 COG3044 Predicted ATPase of th 98.3 4.6E-06 9.9E-11 83.5 10.3 159 243-434 238-412 (554)
487 TIGR02903 spore_lon_C ATP-depe 98.3 2.5E-06 5.4E-11 92.8 9.2 110 247-402 174-291 (615)
488 PRK07594 type III secretion sy 98.3 1E-06 2.2E-11 91.0 5.6 65 219-285 128-192 (433)
489 TIGR03881 KaiC_arch_4 KaiC dom 98.3 1.7E-06 3.7E-11 82.5 6.8 57 244-304 16-76 (229)
490 TIGR00101 ureG urease accessor 98.3 1.7E-06 3.7E-11 80.9 6.4 57 250-307 3-59 (199)
491 cd00009 AAA The AAA+ (ATPases 98.2 5.2E-06 1.1E-10 71.8 9.0 54 363-417 72-131 (151)
492 cd01123 Rad51_DMC1_radA Rad51_ 98.2 7.7E-06 1.7E-10 78.2 10.5 41 245-285 16-63 (235)
493 PRK10416 signal recognition pa 98.2 1E-06 2.2E-11 88.2 4.4 60 246-305 112-177 (318)
494 PRK09862 putative ATP-dependen 98.2 1.2E-06 2.7E-11 92.3 4.9 63 223-287 187-249 (506)
495 PTZ00035 Rad51 protein; Provis 98.2 5.2E-06 1.1E-10 83.8 9.1 78 244-327 114-198 (337)
496 PRK06315 type III secretion sy 98.2 1.2E-06 2.6E-11 90.7 4.1 70 236-306 153-234 (442)
497 cd01136 ATPase_flagellum-secre 98.2 2.7E-06 5.8E-11 85.0 6.1 59 225-285 48-106 (326)
498 TIGR00152 dephospho-CoA kinase 98.2 4.7E-06 1E-10 77.1 7.0 70 360-431 60-133 (188)
499 PRK14722 flhF flagellar biosyn 98.2 6.1E-06 1.3E-10 83.9 8.4 36 237-272 126-161 (374)
500 PF13555 AAA_29: P-loop contai 98.1 1.5E-06 3.1E-11 64.9 2.8 39 238-276 12-51 (62)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-92 Score=731.84 Aligned_cols=455 Identities=27% Similarity=0.418 Sum_probs=402.5
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+||+++|+..+...++..+...+.+.+..++.+++|+++||.++++++..+|+...+.++|.+..+++.+..+++.++.+
T Consensus 248 ~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~ 327 (716)
T KOG0058|consen 248 ISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARAN 327 (716)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998888888888888899999999999999999999
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 158 (467)
+...|.+++++|||+|+.|+.+.++|.+..+...+...+.......+.....+...+....+.++. +...|.++.|.+
T Consensus 328 ~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L 407 (716)
T KOG0058|consen 328 QVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGAL 407 (716)
T ss_pred HHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHH
Confidence 999999999999999999999999999988877666544333222222222233333332222221 223489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV 237 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~ 237 (467)
..|+.|...+...+..++..+..+.++..|.+|++|+++.+|.-+.. +...| . ...|.|+|+||+|+||.. +.++
T Consensus 408 ~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p-~-~~~G~IeF~~VsFaYP~Rp~~~V 483 (716)
T KOG0058|consen 408 SSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAP-D-HLQGVIEFEDVSFAYPTRPDVPV 483 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Ccccc-c-cccceEEEEEeeeecCCCCCchh
Confidence 99999999999999999999999999999999999999976543321 11111 1 356789999999999754 3469
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||+|+|||++|+|||||+||||++++|.++|+|++|+|.+||+||++++...+|++||+|.|||.||++||+|||.
T Consensus 484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIA 563 (716)
T ss_pred hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
++. ..+++++..++++++.++||..+|+||||.|||+|.+|||||||||||||||++||+||||||+||+||.++|..+
T Consensus 564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV 643 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV 643 (716)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH
Confidence 754 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC-chHHHHHHHHHhh
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN-SAFSKLVAEYRSS 459 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~-~~~~~l~~~~~~~ 459 (467)
+++|.+..+++|||+|+|||++++.||+|+|+++|+++|.|+|+||++.+ |.|++|.+++...
T Consensus 644 q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 644 QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 99999988899999999999999999999999999999999999999966 8999999987543
No 2
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-88 Score=755.88 Aligned_cols=457 Identities=52% Similarity=0.857 Sum_probs=434.6
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+||+++|++.+|..+|..+..++..++.+++.++++.+..|+++++++|+.+++++++++|.+..|++++.+..+++|++
T Consensus 918 LNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~ 997 (1381)
T KOG0054|consen 918 LNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIY 997 (1381)
T ss_pred hhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGK-HLPGFVG 159 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 159 (467)
+|+.|+++|+.|||+|+.+++|.+++.+..|.+.+..+.....++|+..+++++.++++..++++.++.... .++|.++
T Consensus 998 sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vG 1077 (1381)
T KOG0054|consen 998 SHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVG 1077 (1381)
T ss_pred HhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHH
Confidence 999999999999999999999999999999999999999999999999999999998887777665554433 7799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceec
Q 044927 160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239 (467)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~ 239 (467)
+.++|+..+...+.++.+....+++.+.|+||+.|+.+.|+|++...+...+++.||..|.|+|+|++.+|+++.++||+
T Consensus 1078 Lslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk 1157 (1381)
T KOG0054|consen 1078 LSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLK 1157 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhc
Confidence 99999999999999999999999999999999999999888855544444477889999999999999999988888999
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL 319 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~ 319 (467)
|+||+|+|||++||||++|||||||+++|.|+.+|.+|+|.|||+|++++.++++|++++++||||.||+||+|.|++|+
T Consensus 1158 ~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf 1237 (1381)
T KOG0054|consen 1158 GISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF 1237 (1381)
T ss_pred CceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH
Q 044927 320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~ 399 (467)
..++|+++|+++++|++.+.+.++|.|+|+.+.|+|.|+|-||||.+||||||+++++||+|||+|+++|++|+..|++.
T Consensus 1238 ~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~t 1317 (1381)
T KOG0054|consen 1238 DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 1317 (1381)
T ss_pred cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHHHHH
Q 044927 400 IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAEYR 457 (467)
Q Consensus 400 l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~~~ 457 (467)
|++.+++||||.|+||++++.+||||+|||+|+|+|.|+|++|+++ ++.|+++..++.
T Consensus 1318 IR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1318 IREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred HHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999974 677766666554
No 3
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.3e-86 Score=716.18 Aligned_cols=448 Identities=28% Similarity=0.412 Sum_probs=401.5
Q ss_pred ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Q 044927 6 SDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAE 85 (467)
Q Consensus 6 ~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 85 (467)
+|.+.+.++++..+...+..++.+++++++|++++|+++++++..++++..+...+.+..++..+...+..+..++++.|
T Consensus 258 ~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE 337 (709)
T COG2274 258 RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVE 337 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 57889999999999999999999999999999999999998776666665555555555555555555566778889999
Q ss_pred HHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCccHHHHHHHHH
Q 044927 86 TSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV--LLPGKHLPGFVGLSLS 163 (467)
Q Consensus 86 ~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~ 163 (467)
+++|+++||+.+.|+++..+|++...+..+..++......+......+++.+..++++++.. ...+.++.|.+.++.+
T Consensus 338 ~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~ 417 (709)
T COG2274 338 TIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNM 417 (709)
T ss_pred HHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 99999999999999999999999999998888888887777777777777766665555532 3458999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceecceeE
Q 044927 164 YALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITC 243 (467)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl 243 (467)
+...+..|+..+.+.+..+++...+.+|+.++++.|+|.+.. ..+...++..+.|+++||+|+|+.+.+++|+|+|+
T Consensus 418 l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL 494 (709)
T COG2274 418 LAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSL 494 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cccccccccCceEEEEEEEEEeCCCCcchhhceeE
Confidence 999999999999999999999999999999999988775321 11112234567899999999998876789999999
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC-CC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MY 322 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~-~~ 322 (467)
+|++||++||||+||||||||+|+|+|+|+|++|+|++||.|++++++..+|++||||+||+.+|+|||+||+++.. ..
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~ 574 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEA 574 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754 57
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 044927 323 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE 402 (467)
Q Consensus 323 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 402 (467)
+++++.++|+.+++++++.++|.||+|.+||+|.+||||||||++|||||+++|+|||||||||+||+++|+.+.+.|.+
T Consensus 575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 403 EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 403 ~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
...++|+|+||||+++++.||||+||++|+|+++|+|+|+++.+|.|+++++.+
T Consensus 655 ~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 655 ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999998754
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.8e-84 Score=753.22 Aligned_cols=455 Identities=40% Similarity=0.676 Sum_probs=411.7
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+||+++|++.++..++..+..++..++.+++.++++++.+|+++++++|++++++++.+++.+..++..+.....+++++
T Consensus 1065 lnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~ 1144 (1522)
T TIGR00957 1065 VNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVY 1144 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 48999999999999999999999999999999999999999888877887777778888888888888888888999999
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL 160 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (467)
+++.|+++|+++||+|+.+++|.+++.+..+...+..+.......|+..+++++..++..+++.+.+...+.+++|.+++
T Consensus 1145 ~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ 1224 (1522)
T TIGR00957 1145 SHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGL 1224 (1522)
T ss_pred HHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999999999998888877777778888877777655544333333332347789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceecc
Q 044927 161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKG 240 (467)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~ 240 (467)
++.|+..+..++..+...+..++.+++|++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+++|+|
T Consensus 1225 ~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~ 1304 (1522)
T TIGR00957 1225 SVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRH 1304 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccc
Confidence 99999999999999999999999999999999999987765432112222333466678899999999997655579999
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 320 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~ 320 (467)
+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||++|+||||+||++++
T Consensus 1305 is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~ 1384 (1522)
T TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS 1384 (1522)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHH
Q 044927 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l 400 (467)
.+++++++++++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|
T Consensus 1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957 1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927 401 REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455 (467)
Q Consensus 401 ~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~ 455 (467)
++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||++++|.|++++++
T Consensus 1465 ~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1465 RTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 9988999999999999999999999999999999999999999988999999875
No 5
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-83 Score=704.19 Aligned_cols=454 Identities=24% Similarity=0.320 Sum_probs=369.6
Q ss_pred chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927 2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN 81 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (467)
+|+.+|...++..+...+..+++++.++++.+++.|+++|+++++++.+.|+.......+.+..........+...+...
T Consensus 769 ~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~ 848 (1228)
T KOG0055|consen 769 SRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASK 848 (1228)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998765554444433222222222222223334455667
Q ss_pred HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hCCCccHHHHH
Q 044927 82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI-VL-LPGKHLPGFVG 159 (467)
Q Consensus 82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~g~~~ 159 (467)
...|++++++||++|+.|+++.+.|.+..++..+...+............+++..++..++..+. .+ ..+.+++..+.
T Consensus 849 iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~ 928 (1228)
T KOG0055|consen 849 IAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVF 928 (1228)
T ss_pred HHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHH
Confidence 89999999999999999999999999988887776555444333332233333333333333332 12 23777776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCcee
Q 044927 160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLVL 238 (467)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~L 238 (467)
..+.....-...+.........+..+..|+.+++++++.++..+...+.. ....+..|.|+++||+|+||.. +.++|
T Consensus 929 ~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il 1006 (1228)
T KOG0055|consen 929 RVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVL 1006 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhh
Confidence 43322222222334455566788899999999999999765322211111 1112346889999999999743 23589
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++|+.+||||||||||||++.+|.|+|+|++|.|.+||+|+++++++++|++||.|.|+|.||++||+|||.+
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~Y 1086 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAY 1086 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
+ ...+.+|+.+|++.+++++|+..+|+||||.+||+|.+||||||||||||||++|||+||||||+||+||.++|+.++
T Consensus 1087 G~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQ 1166 (1228)
T KOG0055|consen 1087 GSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQ 1166 (1228)
T ss_pred cCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHH
Confidence 7 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR 457 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~ 457 (467)
++|++...|+|+|+|+|||+++++||.|+|+++|+|+|+|+|++|++.+|.|.+|++.+.
T Consensus 1167 eALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1167 EALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred HHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999998764
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.5e-83 Score=689.04 Aligned_cols=453 Identities=21% Similarity=0.272 Sum_probs=374.8
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++...+..++.+++.+++.++++++++|+++++++.++++..++...+.+..++..+...+..+++.
T Consensus 123 ~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (588)
T PRK11174 123 ATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLS 202 (588)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999998877666666555555565555555555666778889
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHH-
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL-IVLLPGKHLPGFV- 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~- 158 (467)
+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+......+......++..+...+++++ .....|.++.|.+
T Consensus 203 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~ 282 (588)
T PRK11174 203 GHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYLGELNFGHYG 282 (588)
T ss_pred HHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999888777666554443333333333333332222121111 1122255555432
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEe
Q 044927 159 --------GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY 230 (467)
Q Consensus 159 --------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y 230 (467)
.+++.+...+..|+..+...+..++++.++.+|+.++++.+++.+. ...... +.+..+.|+++||+|.|
T Consensus 283 ~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~~~~~-~~~~~~~i~~~~vsf~~ 359 (588)
T PRK11174 283 TGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QGEKEL-ASNDPVTIEAEDLEILS 359 (588)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCcccc-CCCCCceEEEEeeEEec
Confidence 2222455567788888999999999999999999999987654221 111000 10123469999999877
Q ss_pred CCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc
Q 044927 231 RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 310 (467)
Q Consensus 231 ~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 310 (467)
+++ +++|+|+||+|++||++||+||||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+||||+|++|++
T Consensus 360 ~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~ 437 (588)
T PRK11174 360 PDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG 437 (588)
T ss_pred cCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc
Confidence 544 46999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cHHHhcCcC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCC
Q 044927 311 SVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389 (467)
Q Consensus 311 tv~enl~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD 389 (467)
||+|||.++ +++++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||
T Consensus 438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD 517 (588)
T PRK11174 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517 (588)
T ss_pred CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 999999876 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927 390 SATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS 458 (467)
Q Consensus 390 ~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~ 458 (467)
+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++++.+.+
T Consensus 518 ~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~ 586 (588)
T PRK11174 518 AHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQE 586 (588)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhc
Confidence 999999999999988899999999999999999999999999999999999999999999999887654
No 7
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-82 Score=740.19 Aligned_cols=456 Identities=40% Similarity=0.692 Sum_probs=397.8
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+||+++|++.++..++..+..++..++.+++.++++++++|...++++|++++++++..++.+..++..+.....+++++
T Consensus 1013 lnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~ 1092 (1622)
T PLN03130 1013 INRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVY 1092 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 48999999999999999999999999999999999988888776667777666666677787888888888888899999
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----cH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKH-----LP 155 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 155 (467)
+++.|+++|+++||+|+.+++|.+.+.+..+...+..+.......|+..+..++..++..+++.+.+...+.. ..
T Consensus 1093 ~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 1172 (1622)
T PLN03130 1093 AQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFA 1172 (1622)
T ss_pred HHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhh
Confidence 9999999999999999999999999888888877776666666778776666665544433332222222211 14
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCC
Q 044927 156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTP 235 (467)
Q Consensus 156 g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~ 235 (467)
+.++.++.|+..+..++..+......++..+++++|+.++++.|+|.+...+...++..||..+.|+|+||+|+|+++.+
T Consensus 1173 ~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~ 1252 (1622)
T PLN03130 1173 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP 1252 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC
Confidence 55666777777888888888888888999999999999999987765432122223334566778999999999976656
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||.+|+||||||
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927 316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395 (467)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~ 395 (467)
|+++..+++++++++++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.
T Consensus 1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~ 1412 (1622)
T PLN03130 1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412 (1622)
T ss_pred hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 99877889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHHHH
Q 044927 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAEY 456 (467)
Q Consensus 396 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~~ 456 (467)
|++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||++. +|.|++|++..
T Consensus 1413 Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred HHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 99999999889999999999999999999999999999999999999986 68999998754
No 8
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.1e-82 Score=679.26 Aligned_cols=451 Identities=26% Similarity=0.414 Sum_probs=383.9
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++..+.+....+..+++.+++.+++++..+|.++++++...++..+....+.++.++..+..++..+++.
T Consensus 112 ~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (567)
T COG1132 112 ISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELN 191 (567)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999876677688999999999999999998887666665555555555444566666666778899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.++...+++.+..+...+...+..............+..+......++ .....+.++.|.+
T Consensus 192 ~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 271 (567)
T COG1132 192 ARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGAL 271 (567)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHH
Confidence 99999999999999999999888888776666555543333333333333333333333222222 1223477899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.+++.|...+..++..+...+..++.+..+.+|+.++++.+++... .... .....+.|+++||+|+|+++ +++|
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~y~~~-~~vl 345 (567)
T COG1132 272 AAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFSYPGK-KPVL 345 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEEcCCC-Cccc
Confidence 9999999999999999999999999999999999999987543221 1111 11234679999999999753 4599
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||++||||||||||||++++|+|+|+|++|+|++||+|+++++..++|++|++|||||+||++||+|||.+
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~ 425 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIAL 425 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
+. ++++++++++++.+++++++.++|+||||.+||+|.+||||||||++||||+++||||||||||||+||+++|+.++
T Consensus 426 g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~ 505 (567)
T COG1132 426 GRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505 (567)
T ss_pred CCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHH
Confidence 75 47999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR 457 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~ 457 (467)
+.+.+..+++|+|+|+||++++++||+|+||++|+|+|.|+|+||++.+|.|+++++.+.
T Consensus 506 ~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 506 DALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred HHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 999987788999999999999999999999999999999999999999999999998764
No 9
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-81 Score=730.89 Aligned_cols=456 Identities=40% Similarity=0.689 Sum_probs=391.3
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+||+++|++.++..++..+..++..++.+++.++++++++|...++++|+.++++++..++.+..++..+.....+++++
T Consensus 1010 lnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~ 1089 (1495)
T PLN03232 1010 INRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIY 1089 (1495)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 48999999999999999999999999888888888888887666666676666666666777777788888888999999
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----cH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKH-----LP 155 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 155 (467)
+++.|+++|+++||+|+.++++.+++.+..+...+..+.......|+......+..++..+++.+.+...+.. ..
T Consensus 1090 ~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 1169 (1495)
T PLN03232 1090 AQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFA 1169 (1495)
T ss_pred HHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch
Confidence 9999999999999999999999998888888777766655555667666555444333332222222222321 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCC
Q 044927 156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTP 235 (467)
Q Consensus 156 g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~ 235 (467)
+.++.++.|...+..++..+...+..++.++++++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+
T Consensus 1170 ~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~ 1249 (1495)
T PLN03232 1170 STMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP 1249 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC
Confidence 44556677778888888888999999999999999999999887664421111122334566678999999999976556
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||++|+||||||
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927 316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395 (467)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~ 395 (467)
|+++..+++++++++++.+++++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.
T Consensus 1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~ 1409 (1495)
T PLN03232 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 99877889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC-chHHHHHHHH
Q 044927 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN-SAFSKLVAEY 456 (467)
Q Consensus 396 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~-~~~~~l~~~~ 456 (467)
|++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||++++ +.|++|++..
T Consensus 1410 Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1410 IQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred HHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999988899999999999999999999999999999999999999875 5899998754
No 10
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.2e-80 Score=682.95 Aligned_cols=446 Identities=24% Similarity=0.335 Sum_probs=381.0
Q ss_pred chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927 2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN 81 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (467)
+|++ |++.+++++...+...+..++.++++++++++++|+++++++.++++.+++...+.+..++..+...+..++..+
T Consensus 237 ~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (686)
T TIGR03797 237 SRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISG 315 (686)
T ss_pred HHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6776 789999998888888888888888888999999999988776665555555444544444444455556677889
Q ss_pred HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHHH
Q 044927 82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFVG 159 (467)
Q Consensus 82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~ 159 (467)
.+.|.++|+++||+++.|+++.++|.+..++..+...+......+......++..+...++.++. ....|.++.|.+.
T Consensus 316 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lv 395 (686)
T TIGR03797 316 LTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFL 395 (686)
T ss_pred HHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999888877776666555555554444444333333222222 2245889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceec
Q 044927 160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239 (467)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~ 239 (467)
++..+...+..|+..+...+..++.+..+.+|+.++++.++|.+. ....+ .+..+.|+++||+|+|+++.+++|+
T Consensus 396 a~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvsf~Y~~~~~~vL~ 470 (686)
T TIGR03797 396 AFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVTFRYRPDGPLILD 470 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEEEEcCCCCcccee
Confidence 999999999999999999999999999999999999987654321 11111 1124579999999999755567999
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL 319 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~ 319 (467)
|+||+|++||++||+||||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++||||||+|++|++|++|||.++
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~ 550 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGG 550 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH
Q 044927 320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~ 399 (467)
...++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|++||||||||+||+++|+.+.+.
T Consensus 551 ~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~ 630 (686)
T TIGR03797 551 APLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES 630 (686)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 55889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927 400 IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455 (467)
Q Consensus 400 l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~ 455 (467)
|++. ++|+|+||||+++++.||+|++|++|+|++.|+|+|++++++.|+++++.
T Consensus 631 L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 631 LERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR 684 (686)
T ss_pred HHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 9886 58999999999999999999999999999999999999999999998864
No 11
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.6e-80 Score=721.56 Aligned_cols=456 Identities=32% Similarity=0.530 Sum_probs=401.0
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+||+++|++.++..++..+..++..++.+++.++++++.+|.++++++|++++++.+..++.+..++.++......++++
T Consensus 1058 lnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~ 1137 (1560)
T PTZ00243 1058 LNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVF 1137 (1560)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 48999999999999999999999999999999999999999777777777767777778888888888888888999999
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-CCCccHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV---LL-PGKHLPG 156 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~g 156 (467)
+++.|+++|+++||+|+.++.+.+++.+..+...+..+.......|+..+..++..++..+++++.+ .. .+.+++|
T Consensus 1138 s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 1217 (1560)
T PTZ00243 1138 TLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIG 1217 (1560)
T ss_pred HHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 9999999999999999999999999999998888877777777888887777766554433322211 11 2446789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCC-c----------------------cCCCCC
Q 044927 157 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL-PPEPPAI-I----------------------EETKPP 212 (467)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~-~~~~~~~-~----------------------~~~~~~ 212 (467)
.++++++|+..+..++..+...+..++.++.+++|+.++++. ++|.... . +...++
T Consensus 1218 ~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1297 (1560)
T PTZ00243 1218 LVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPT 1297 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCc
Confidence 888889999999999999999999999999999999999963 3221000 0 000011
Q ss_pred ---CCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC
Q 044927 213 ---ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 289 (467)
Q Consensus 213 ---~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~ 289 (467)
+.++..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 1298 ~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i 1377 (1560)
T PTZ00243 1298 SAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY 1377 (1560)
T ss_pred ccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC
Confidence 11223467999999999986656799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 290 GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 290 ~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+.+++|++|+||||||+||+|||++||+++..+++++++++++++++++++.++|+||||.+|++|.+||||||||+|||
T Consensus 1378 ~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1378 GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred CHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHH
Confidence 99999999999999999999999999998778899999999999999999999999999999999999999999999999
Q ss_pred HHhcCC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc-cCc
Q 044927 370 RVLLKR-NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME-TNS 447 (467)
Q Consensus 370 Ral~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~-~~~ 447 (467)
|||+++ |+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||++ .++
T Consensus 1458 RALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~ 1537 (1560)
T PTZ00243 1458 RALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQS 1537 (1560)
T ss_pred HHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence 999996 899999999999999999999999999888999999999999999999999999999999999999997 489
Q ss_pred hHHHHHHHH
Q 044927 448 AFSKLVAEY 456 (467)
Q Consensus 448 ~~~~l~~~~ 456 (467)
.|+++++..
T Consensus 1538 ~f~~l~~~~ 1546 (1560)
T PTZ00243 1538 IFHSMVEAL 1546 (1560)
T ss_pred HHHHHHHHh
Confidence 999998754
No 12
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.1e-80 Score=666.73 Aligned_cols=451 Identities=21% Similarity=0.300 Sum_probs=388.4
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++..+...+..++..++.++++++++++++|+++++++.++++.+++...+.+..++..+...+..+.+.
T Consensus 125 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (582)
T PRK11176 125 LSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVT 204 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999998877766666555555565555555555566677888
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.|+.+.++|.+..+...+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 205 ~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~ 284 (582)
T PRK11176 205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTI 284 (582)
T ss_pred HHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999988888777665555544444444444433333222222 1234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
++++.+...+..|+..+...+..++.+..+.+|+.++++.+++.+. ..... .+..+.|+++||+|+|+++.+++|
T Consensus 285 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~--~~~~~~i~~~~vsf~y~~~~~~il 359 (582)
T PRK11176 285 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GKRVI--ERAKGDIEFRNVTFTYPGKEVPAL 359 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CCcCC--CCCCCeEEEEEEEEecCCCCCccc
Confidence 8888888889999999999999999999999999999986544221 11111 122346999999999976556799
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++|++|++|||.+
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~ 439 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 319 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 319 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
+. .+++++++++++.++++++++++|+|+||.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+
T Consensus 440 ~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i 519 (582)
T PRK11176 440 ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 53 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
.+.|.+..+++|+|+||||++.++.||+|++|++|+|++.|+|+++++.++.|+++++.+
T Consensus 520 ~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred HHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence 999999878899999999999999999999999999999999999999999999998765
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.5e-80 Score=679.10 Aligned_cols=446 Identities=25% Similarity=0.362 Sum_probs=378.4
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++..+...+..++.+++.++++++++++++|+++++++..+++..++...+.+..++..+...+..++..
T Consensus 261 ~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (711)
T TIGR00958 261 TSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKAN 340 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999998877766666666666666666666666667777889
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.|+++.++|.+..++..+...+..............+..+...++..+ .....|.+++|.+
T Consensus 341 ~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~l 420 (711)
T TIGR00958 341 QVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL 420 (711)
T ss_pred HHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999988877666544333322222211222222222111111 1234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV 237 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~ 237 (467)
.+++.|...+..++..+...+..++++..+.+|+.++++.+++.+.. .... +.+..+.|+++||+|+|++. ++++
T Consensus 421 va~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~--~~~~~~~I~~~nVsf~Y~~~~~~~v 496 (711)
T TIGR00958 421 VSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GTLA--PLNLEGLIEFQDVSFSYPNRPDVPV 496 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCC--CCCCCCeEEEEEEEEECCCCCCCcc
Confidence 99999999999999999999999999999999999999875543211 1101 11234579999999999753 3569
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++|++|++|||.
T Consensus 497 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~ 576 (711)
T TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIA 576 (711)
T ss_pred ccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 318 PL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 318 ~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
++ +..++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.+
T Consensus 577 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i 656 (711)
T TIGR00958 577 YGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL 656 (711)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHH
Confidence 65 35788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l 452 (467)
.+ ....+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++
T Consensus 657 ~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 657 QE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred HH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 98 3334689999999999999999999999999999999999999988988876
No 14
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.1e-80 Score=679.97 Aligned_cols=450 Identities=22% Similarity=0.296 Sum_probs=383.9
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++| +.+.+++...+..++..++.++++++++++++|+++++++.++++..++...+.+..++..+...+..++..
T Consensus 254 ~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (710)
T TIGR03796 254 ASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLT 332 (710)
T ss_pred HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688887 689999998999999999999999999999999999887776666666666666655555555556677889
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+++.|+.+.++|.+...+..+...+......+......++..+...++.++. ....|.+++|.+
T Consensus 333 ~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~l 412 (710)
T TIGR03796 333 GVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGML 412 (710)
T ss_pred HHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999998887777666555555444444444444333333222221 224588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccC--CCCCCC-CCCcccEEEEeEEEEeCCCCC
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--TKPPAS-WPSHGRIELEDLKVRYRPNTP 235 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~~vs~~y~~~~~ 235 (467)
.++..+...+..|+..+...+..++++..+++|+.++++.++|.+..... ...... .+..+.|+++||+|+|++..+
T Consensus 413 va~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~ 492 (710)
T TIGR03796 413 VAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEP 492 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCC
Confidence 99999999999999999999999999999999999999876554221100 000001 123457999999999986556
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++|++|++||
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN 572 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN 572 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927 316 LDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394 (467)
Q Consensus 316 l~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~ 394 (467)
|.++. ..++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|++||||||||+||+++|+
T Consensus 573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~ 652 (710)
T TIGR03796 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652 (710)
T ss_pred hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHH
Confidence 98653 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453 (467)
Q Consensus 395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~ 453 (467)
.+.+.+++ .++|+|+||||++++..||||++|++|+|++.|+|+|+++.++.|++++
T Consensus 653 ~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 653 IIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred HHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999987 4899999999999999999999999999999999999999999998876
No 15
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-79 Score=660.96 Aligned_cols=450 Identities=20% Similarity=0.276 Sum_probs=376.3
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAK-YIQGYYLSSARELMRMNGTTKAPI 79 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (467)
++|+++|++.++.++.+.+..++.+++.++++++++++++|+++++++.++++.. .+...+.+..++..+...+..+++
T Consensus 120 ~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (574)
T PRK11160 120 LNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQY 199 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999887644443332 233444444444455555677888
Q ss_pred HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCccHHHH
Q 044927 80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI-VLLPGKHLPGFV 158 (467)
Q Consensus 80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~ 158 (467)
.+.+.|.++|+++||+|+.|+++.+++.+..++..+...+......+......++..+...++.++. ....|.++.|.+
T Consensus 200 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l 279 (574)
T PRK11160 200 RVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGAL 279 (574)
T ss_pred HHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 9999999999999999999999999999988877776665555444444444433333322222221 223577888887
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCce
Q 044927 159 GLSLSYAL-TLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLV 237 (467)
Q Consensus 159 ~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~ 237 (467)
.+++.|.. ....++..+...+..++++.++.+|+.++++.+++.+.. ... .. .+..+.|+++||+|+|+++.+++
T Consensus 280 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~-~~~-~~--~~~~~~i~~~~v~f~y~~~~~~i 355 (574)
T PRK11160 280 IALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP-TTS-TA--AADQVSLTLNNVSFTYPDQPQPV 355 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-ccc-CC--CCCCCeEEEEEEEEECCCCCCcc
Confidence 77776653 345577777888889999999999999999876542211 011 11 12245799999999997654569
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||++++||++||+||||||||||+++|+|+|+|++|+|++||+++++++..++|++|+||||+|++|++|++||+.
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 435 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLL 435 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
+.. ..++++++++++.+++++++++ |+||||.+||+|.+||||||||++||||++++|++||||||||+||+++++.+
T Consensus 436 ~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i 514 (574)
T PRK11160 436 LAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI 514 (574)
T ss_pred cCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 653 5789999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~ 455 (467)
.+.+++..+++|+|+||||++++..||+|++|++|++++.|+|+|+++.+|.|+++++.
T Consensus 515 ~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 515 LELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred HHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 99999988899999999999999999999999999999999999999999999998763
No 16
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1e-79 Score=677.80 Aligned_cols=448 Identities=22% Similarity=0.278 Sum_probs=380.0
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|++ |++.+.+++...+..++..++.++++++++++++|+++++++..+++..++...+.+..++..+...+..+...
T Consensus 256 ~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (708)
T TIGR01193 256 VSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLN 334 (708)
T ss_pred HHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36887 89999998888888888888888888888999999998887666666655555666666666666666778889
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|+++|+++||+|+.|+++.++|.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 335 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~l 414 (708)
T TIGR01193 335 SSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQL 414 (708)
T ss_pred HHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999888777666555444433333332223222222222222 2224589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.++..+...+..|+..+...+..++.+..+.+|+.++++.++|.+... ......+..+.|+++||+|+|+++ +++|
T Consensus 415 va~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL 490 (708)
T TIGR01193 415 ITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELNNLNGDIVINDVSYSYGYG-SNIL 490 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCCCCCCcEEEEEEEEEcCCC-Ccce
Confidence 999999999999999999999999999999999999998766543211 001111234679999999999743 4699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||+|++|++||+|||.+
T Consensus 491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l 570 (708)
T TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL 570 (708)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C--CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 319 L--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 319 ~--~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
+ +.+++++++++++.+++++++.++|+||||.+|++|.+||||||||++||||++++|++||||||||+||+++++.+
T Consensus 571 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i 650 (708)
T TIGR01193 571 GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650 (708)
T ss_pred cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 5 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~ 454 (467)
.+.|++. +++|+|+||||+++++.||+|++|++|++++.|+|+|+++.+|.|+++++
T Consensus 651 ~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 651 VNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred HHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 9999885 68999999999999999999999999999999999999999999998864
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.4e-79 Score=659.14 Aligned_cols=452 Identities=25% Similarity=0.339 Sum_probs=378.1
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++..+...+..++..++.++++++++++++|+++++++..+++.+.+...+.+..++..+...+..++..
T Consensus 125 ~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (592)
T PRK10790 125 ISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADIN 204 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999998765544444333333344444444444445567788
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWL-VLRIEALQNLIILTA-ALLIVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 158 (467)
+++.|.++|+++||+|+.|+.+.+++.+..++..+...+......+. .....++..+...++ .+......|.+++|.+
T Consensus 205 ~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l 284 (592)
T PRK10790 205 DGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVL 284 (592)
T ss_pred HHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 89999999999999999999999999887776655544333322221 112222222221111 1111224588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.++..|...+..|+..+...+..++++..+.+|+.++++.++++.. .... ....+.|+++||+|+|+++ +++|
T Consensus 285 ~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~~---~~~~~~i~~~~v~f~y~~~-~~il 357 (592)
T PRK10790 285 YAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---NDDR---PLQSGRIDIDNVSFAYRDD-NLVL 357 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CCcc---CCCCCeEEEEEEEEEeCCC-Ccee
Confidence 9999999999999999999999999999999999999986543211 1111 1123569999999999754 4699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||++||+|+||||||||+++|+|+|+|++|+|++||.|+++++.+.+|++|+||||+|++|++|++|||.+
T Consensus 358 ~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~ 437 (592)
T PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTL 437 (592)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927 319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~ 398 (467)
+..+++++++++++.++++++++++|+|+||.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+.+
T Consensus 438 ~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~ 517 (592)
T PRK10790 438 GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517 (592)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 76788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHhh
Q 044927 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSS 459 (467)
Q Consensus 399 ~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~~ 459 (467)
.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.++.|+++++.+...
T Consensus 518 ~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 518 ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAG 578 (592)
T ss_pred HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhhh
Confidence 9999878899999999999999999999999999999999999999999999999876443
No 18
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-79 Score=713.87 Aligned_cols=455 Identities=29% Similarity=0.514 Sum_probs=401.5
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+||+++|++.++..++..+..++..++.+++.++++++++|+++++++|++++++++.+++.+..++..+.....+++++
T Consensus 985 lnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~ 1064 (1490)
T TIGR01271 985 LNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIF 1064 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 48999999999999999999999999999999999999999988888887777777888888888888888888999999
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL 160 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (467)
+++.|+++|+.+||+|+.++++.+++.+..+...+..+.......|+..+..++..+....+.++.+ .......|.++.
T Consensus 1065 ~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~-~~~~~~~g~~g~ 1143 (1490)
T TIGR01271 1065 SHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAI-GTNQDGEGEVGI 1143 (1490)
T ss_pred HHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCccHHHH
Confidence 9999999999999999999999999999988777766666666778877766654433322222211 112345666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccC--------------CCCCCCCCCcccEEEEeE
Q 044927 161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--------------TKPPASWPSHGRIELEDL 226 (467)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~~v 226 (467)
+++|+..+..++..+...+..++..+.|++|+.++++.++|.+...+. ..++..||..+.|+|+||
T Consensus 1144 ~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nV 1223 (1490)
T TIGR01271 1144 ILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGL 1223 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEE
Confidence 778888888888888888899999999999999999877654321110 112234666788999999
Q ss_pred EEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCc
Q 044927 227 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 306 (467)
Q Consensus 227 s~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 306 (467)
+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+++ ++|+|++||+|+++++.+++|++|+||||+|+
T Consensus 1224 s~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~ 1302 (1490)
T TIGR01271 1224 TAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF 1302 (1490)
T ss_pred EEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc
Confidence 99998666679999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred cccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC
Q 044927 307 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386 (467)
Q Consensus 307 lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts 386 (467)
+|+||||+||++...+++++++++++.+++.+++.++|+|+||.++++|.+||||||||+||||||+++|+|||||||||
T Consensus 1303 LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS 1382 (1490)
T TIGR01271 1303 IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSA 1382 (1490)
T ss_pred cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 99999999999877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927 387 SIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR 457 (467)
Q Consensus 387 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~ 457 (467)
+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|++|++.++.|++|+++..
T Consensus 1383 ~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1383 HLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999999889999999999999999999999999999999999999988899999987653
No 19
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.3e-79 Score=670.09 Aligned_cols=440 Identities=23% Similarity=0.326 Sum_probs=376.2
Q ss_pred chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927 2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN 81 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (467)
+|+ +|++.+++++...+...+..++.++++++++++++|+++++++..+++.+.+...+.+..++..+...+..++..+
T Consensus 247 ~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (694)
T TIGR03375 247 NQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNA 325 (694)
T ss_pred HHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677 7999999999888888888888888888899999999988776666665555555555555555556667788899
Q ss_pred HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHHH
Q 044927 82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFVG 159 (467)
Q Consensus 82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~ 159 (467)
.+.|+++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++ ..+..|.+++|.+.
T Consensus 326 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~ 405 (694)
T TIGR03375 326 VLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLI 405 (694)
T ss_pred HHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999988887766665555544444433333333322222222 12345889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceec
Q 044927 160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239 (467)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~ 239 (467)
++..+...+..|+..+...+..++.+..+.+|+.++++.++|.+.. .. .....+..+.|+++||+|+|+++.+++|+
T Consensus 406 a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~ 482 (694)
T TIGR03375 406 ACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--TR-FLHRPRLQGEIEFRNVSFAYPGQETPALD 482 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CC-CCCCCCccceEEEEEEEEEeCCCCcccee
Confidence 9999999999999999999999999999999999999876553211 11 01011234579999999999765567999
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL 319 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~ 319 (467)
|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+||+|+++++..++|++|+||||+|++|++|++|||.+.
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~ 562 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG 562 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927 320 G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398 (467)
Q Consensus 320 ~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~ 398 (467)
. .+++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|+++|||||||+||+++++.+++
T Consensus 563 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~ 642 (694)
T TIGR03375 563 APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4 478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 399 ~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
.|.+..+++|+|+||||+++++.||+|++|++|+|++.|+|+||++.
T Consensus 643 ~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 643 RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99998889999999999999999999999999999999999999863
No 20
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-79 Score=616.80 Aligned_cols=449 Identities=21% Similarity=0.324 Sum_probs=375.8
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccccH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTV-IVAKYIQGYYLSSARELMRMNGTTKAPI 79 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (467)
++|++.|++.+++.+-..+.+.+.+++...+..+.+.+++|++++.+...+ ++.+.++..+.+..++..+.-...++.+
T Consensus 118 L~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~l 197 (573)
T COG4987 118 LNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAAL 197 (573)
T ss_pred HHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999987654333 3333445555555555555556677889
Q ss_pred HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-CCCccHHH
Q 044927 80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL-L-PGKHLPGF 157 (467)
Q Consensus 80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~ 157 (467)
.+++.|.+.|..+.+.||+++.+.+.+.+..+...+...+......|..+.+.++..+.+....++... . .|..+...
T Consensus 198 r~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~ 277 (573)
T COG4987 198 RSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPG 277 (573)
T ss_pred HHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhH
Confidence 999999999999999999999999999888877777766666666666665555544443322222221 1 15555333
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCc
Q 044927 158 VGLSLSYALTLSSIQVIMT-RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPL 236 (467)
Q Consensus 158 ~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~ 236 (467)
..+++...+....++..+. ..+..+.+...|..|+.++.+.+++.... ...... ....++++||||+|+++.++
T Consensus 278 aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~---~~~~~~--~~~~l~~~~vsF~y~~~~~~ 352 (573)
T COG4987 278 AALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP---DEQTAT--TGQALELRNVSFTYPGQQTK 352 (573)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC---ccccCC--ccceeeeccceeecCCCccc
Confidence 3333333345555555555 66788899999999999998866543221 111111 11269999999999988878
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
+|+|+||++++||++||+|+||||||||++++.|.|+|++|+|.++|.++..++.+++|+.|++++|.+++|++|+|+|+
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL 432 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNL 432 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927 317 DPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395 (467)
Q Consensus 317 ~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~ 395 (467)
... ++++||+++++++++|+++++...|+||+|++||+|..||||||||++|||+|++|+|++||||||.|||+.||++
T Consensus 433 ~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~ 512 (573)
T COG4987 433 RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512 (573)
T ss_pred hhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHH
Confidence 754 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454 (467)
Q Consensus 396 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~ 454 (467)
+++.+.+..+|||+|+||||+..++.||||+||++|+++++|+|.+|++++|.|+++++
T Consensus 513 vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 513 VLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred HHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 99999999899999999999999999999999999999999999999999999998875
No 21
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-78 Score=621.15 Aligned_cols=449 Identities=22% Similarity=0.309 Sum_probs=383.7
Q ss_pred hhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Q 044927 3 QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIV---AIPTVIVAKYIQGYYLSSARELMRMNGTTKAPI 79 (467)
Q Consensus 3 r~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (467)
.++..++.++.++...++++..+.+..+..++.+++++|..+++ ++|++|+++++ .....+...+.+......+
T Consensus 102 l~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~l 178 (559)
T COG4988 102 LALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARL 178 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999998765 45666666554 3334444555555677789
Q ss_pred HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhC-CCccHH
Q 044927 80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLP-GKHLPG 156 (467)
Q Consensus 80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~g 156 (467)
.+++.|.++|+.|+|.|+..+...++..+...++.+.....-+....-+..++++..+.+.+++++. -+.. |.++..
T Consensus 179 s~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~ 258 (559)
T COG4988 179 SGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLF 258 (559)
T ss_pred HHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHH
Confidence 9999999999999999999999888888877777776666555555555566776666655554442 2344 577766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCc
Q 044927 157 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPL 236 (467)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~ 236 (467)
...+++..+.-++.|+..+...++.-.++.++.+++..+++.|.+.+.... +....+.....++.+|++|.|++++ +
T Consensus 259 ~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~ 335 (559)
T COG4988 259 AGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-P 335 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-c
Confidence 666666777788999999999999999999999999999987655432111 1011111223456669999998765 6
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
+++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++.+++..+||++++||+|+|++|++|++|||
T Consensus 336 ~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi 415 (559)
T COG4988 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415 (559)
T ss_pred ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927 317 DPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395 (467)
Q Consensus 317 ~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~ 395 (467)
.+.. +.++++++++++++++.+++.. |+|+||.+||+|.+|||||+||+++||||+++++++|+|||||+||.++|+.
T Consensus 416 ~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~ 494 (559)
T COG4988 416 LLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494 (559)
T ss_pred hccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH
Confidence 8765 5789999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS 458 (467)
Q Consensus 396 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~ 458 (467)
|++.|.++.+++|+|+||||+..+..||+|+||++|++++.|+|++|.+++|.|++|++++..
T Consensus 495 i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 495 ILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred HHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999988764
No 22
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-80 Score=675.01 Aligned_cols=453 Identities=23% Similarity=0.292 Sum_probs=371.8
Q ss_pred chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927 2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN 81 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (467)
+|+++|++.+++.++..+..++..+.++++.+++.|+..|+++++++++.|+..+....+.+...+....+..+.++..+
T Consensus 132 ~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~ 211 (1228)
T KOG0055|consen 132 TRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGS 211 (1228)
T ss_pred EEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999988877777666555555555555555666777888
Q ss_pred HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHHH
Q 044927 82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFVG 159 (467)
Q Consensus 82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~ 159 (467)
...|++.++|||.+|+.|++..++|.+.++...+...+.............++.........++. .+..+..++|.+.
T Consensus 212 iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~ 291 (1228)
T KOG0055|consen 212 IAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVI 291 (1228)
T ss_pred HHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 99999999999999999999999999999888777655443333222222222222222222222 1122445555432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCC-Ccee
Q 044927 160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNT-PLVL 238 (467)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~-~~~L 238 (467)
..+.....-...+......+..+..+.+++.++++.++..+.......... ......+.|+|+||+|+||... .++|
T Consensus 292 ~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il 369 (1228)
T KOG0055|consen 292 TVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKIL 369 (1228)
T ss_pred EEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhh
Confidence 222111111111222333456678899999999999986443221111111 1112467899999999998543 3699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||+|++|+++||||||||||||++++|.|+|+|++|+|++||.|+.+++.+++|++||.|.|+|.||++||+|||.+
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~ 449 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRY 449 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
+. +++.+++.++++.++.++|+..+|+||+|.+||+|.+|||||||||||||||++||+|||||||||+||+++|+.++
T Consensus 450 G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq 529 (1228)
T KOG0055|consen 450 GKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQ 529 (1228)
T ss_pred CCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHH
Confidence 65 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
++|++..+|+|.|+|||||+++++||+|+||++|+|+|.|+|+||++.+|.|.+|++.+
T Consensus 530 ~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 530 EALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQ 588 (1228)
T ss_pred HHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999866
No 23
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.3e-78 Score=649.23 Aligned_cols=451 Identities=22% Similarity=0.357 Sum_probs=392.2
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++...+..++..++.++++++++++++|++++++++++++..++...+.+..++..+...+..+++.
T Consensus 114 ~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (571)
T TIGR02203 114 LSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVT 193 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999988777777777777777766666666777788899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+++.++.+.++|.+..+...+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 194 ~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l 273 (571)
T TIGR02203 194 TVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDF 273 (571)
T ss_pred HHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHH
Confidence 99999999999999999999999999988887777665555544444444444333322222222 1234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.++..++..+..|+..+...+..++++..+.+|+.++++.+++.+.. .... .+..+.++++||+|+|++..+++|
T Consensus 274 ~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~--~~~~~~i~~~~v~f~y~~~~~~il 348 (571)
T TIGR02203 274 TAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI--ERARGDVEFRNVTFRYPGRDRPAL 348 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--CCCCCeEEEEEEEEEcCCCCCccc
Confidence 99999999999999999999999999999999999999865543211 1111 112457999999999976555799
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||+++|+|+||||||||+++|+|+++|++|+|++||+++++++.+++|++++|+||+|++|++|++|||.+
T Consensus 349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~ 428 (571)
T TIGR02203 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAY 428 (571)
T ss_pred cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 319 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 319 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
+. +.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+
T Consensus 429 ~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i 508 (571)
T TIGR02203 429 GRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508 (571)
T ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 63 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+++++.++.|+++++.+
T Consensus 509 ~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 509 QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred HHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 999999888999999999999999999999999999999999999998888888876643
No 24
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.4e-78 Score=699.14 Aligned_cols=456 Identities=23% Similarity=0.273 Sum_probs=365.7
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSS--ARELMRM------- 71 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~--~~~~~~~------- 71 (467)
++|+++|++.++..+...+..++..++.++++++++++++|+++++++|++++.........+. .++..+.
T Consensus 928 ~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1466)
T PTZ00265 928 SAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGT 1007 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 3689999999999999999999999999999999999999999887766554433222111111 1111111
Q ss_pred ------hccccccHHHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044927 72 ------NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL 145 (467)
Q Consensus 72 ------~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (467)
..+..+.....++|+++|+++||+|+.|+++.++|.+..+...+...+......+......++..+...++.++
T Consensus 1008 ~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1466)
T PTZ00265 1008 VFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWF 1087 (1466)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123456789999999999999999999999999998877766555444433333333333333333222222
Q ss_pred H--HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCC-CCCCCcccEE
Q 044927 146 I--VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPP-ASWPSHGRIE 222 (467)
Q Consensus 146 ~--~~~~~~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~ 222 (467)
. .+..|.+++|.+.+++.+......++..+...+..++.+.++.+|++++++.+++.+......... ......+.|+
T Consensus 1088 G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~ 1167 (1466)
T PTZ00265 1088 GSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIE 1167 (1466)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEE
Confidence 1 223588999987776655443334556677788899999999999999998654321111111100 0112345799
Q ss_pred EEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC---------------------------
Q 044927 223 LEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--------------------------- 274 (467)
Q Consensus 223 ~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--------------------------- 274 (467)
|+||+|+|++. ..++|+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 99999999743 24699999999999999999999999999999999999999
Q ss_pred ---------------------------CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC-CCCCHHH
Q 044927 275 ---------------------------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL-GMYSDNE 326 (467)
Q Consensus 275 ---------------------------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~-~~~~~~~ 326 (467)
++|+|++||+|+++++.+++|++||||||+|+||++||+|||.++ +++++++
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ee 1327 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRED 1327 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHH
Confidence 699999999999999999999999999999999999999999876 4689999
Q ss_pred HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--
Q 044927 327 IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-- 404 (467)
Q Consensus 327 ~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-- 404 (467)
++++++.+++++++.++|+||||.+||+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++.|.+..
T Consensus 1328 I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~ 1407 (1466)
T PTZ00265 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407 (1466)
T ss_pred HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCceEEEEccChhHHhhcCEEEEEeC----CEEE-EecChhhHhc-cCchHHHHHHHH
Q 044927 405 PGSTVITVAHRVPTITDSDMFMVLSY----GELV-EYDLPSKLME-TNSAFSKLVAEY 456 (467)
Q Consensus 405 ~~~tvi~itH~l~~~~~~d~i~vl~~----G~iv-~~g~~~~l~~-~~~~~~~l~~~~ 456 (467)
+++|+|+||||+++++.||+|+||++ |+++ |.|+|+||++ .+|.|+++++.+
T Consensus 1408 ~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1408 ADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 68999999999999999999999999 9955 8999999998 589999998753
No 25
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.2e-77 Score=657.64 Aligned_cols=451 Identities=24% Similarity=0.352 Sum_probs=383.6
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+ +|++.+++++...+..++..++.++++++++++++|+++++++..+++...+...+.+..++..+...+..++..
T Consensus 239 ~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (694)
T TIGR01846 239 VARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAAT 317 (694)
T ss_pred HHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677 699999999988888888777777778889999999998877665555555444444444444444445667788
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 158 (467)
+.+.|+++|+++||++|.|+.+.++|.+..++..+...+......+......++..+...++.++. ....|.+++|.+
T Consensus 318 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~l 397 (694)
T TIGR01846 318 SFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQL 397 (694)
T ss_pred HHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999988877776665555555544444444433333222221 224588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.++..+...+..|+..+...+..++.+..+.+|+.++++.+++.+.. .... .....+.|+++||+|+|+++.+++|
T Consensus 398 ia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~--~~~~~~~i~~~~vsf~y~~~~~~il 473 (694)
T TIGR01846 398 VAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAA--LPELRGAITFENIRFRYAPDSPEVL 473 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCC--CCCCCCeEEEEEEEEEcCCCCcccc
Confidence 99999999999999999999999999999999999999876553211 1001 1112457999999999976555699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||+|++||++||+|+||||||||+++|+|+|+|++|+|++||+++++++.+++|++++||||++++|++|++||+.+
T Consensus 474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~ 553 (694)
T TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIAL 553 (694)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
. +..++++++++++.+++++++.++|+|+||.++++|.+||||||||++||||++++|++||||||||+||+++++.+.
T Consensus 554 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~ 633 (694)
T TIGR01846 554 CNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633 (694)
T ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHH
Confidence 4 357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
+.|++..+++|+|+||||+++++.||+|++|++|+|++.|+|+++++.++.|+++++.+
T Consensus 634 ~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 634 RNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692 (694)
T ss_pred HHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhh
Confidence 99999878999999999999999999999999999999999999999999999998753
No 26
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.7e-77 Score=641.87 Aligned_cols=452 Identities=21% Similarity=0.292 Sum_probs=382.4
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.+...+...+..++..++.+++.++++++++|+++++++.++++..++...+.+..++..+...+..+.+.
T Consensus 116 ~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 195 (588)
T PRK13657 116 LHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLF 195 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999988888888888888888888889999999998887766666666666666666666666666778899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||.|+.++.+.+++.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 196 ~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~ 275 (588)
T PRK13657 196 AHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEV 275 (588)
T ss_pred HHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHH
Confidence 99999999999999999999999999888777666544443333333333333322222222222 2234589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.+++.+...+..++..+...+..+..+..+.+|+.++++.+++.+... ...+. .+..+.|+++||+|+|+++ +++|
T Consensus 276 ~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~~~--~~~~~~I~~~~vsf~y~~~-~~iL 351 (588)
T PRK13657 276 VAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP-GAIDL--GRVKGAVEFDDVSFSYDNS-RQGV 351 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC-CCCCc--CCCCCeEEEEEEEEEeCCC-Ccee
Confidence 999999999999999999999999999999999999987644321110 10001 1123469999999999743 4599
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|++||.++++++.+++|++|+||||+|++|++|++|||.+
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~ 431 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
. ++.++++++++++.+++++++.++|+|+||.++++|.+||||||||++|||||+++|+++|||||||+||+++++.+.
T Consensus 432 ~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~ 511 (588)
T PRK13657 432 GRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK 511 (588)
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 6 357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|+++++..
T Consensus 512 ~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 512 AALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred HHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence 99998877899999999999999999999999999999999999999889999988754
No 27
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.5e-76 Score=634.14 Aligned_cols=451 Identities=20% Similarity=0.283 Sum_probs=378.2
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVM-ASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPI 79 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (467)
++|+++|++.++..+...+..++..++..+++++++ ++++|+++++++.++++..++...+.+..++..+..++..+++
T Consensus 96 ~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
T PRK10789 96 MARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSL 175 (569)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999888888888888766666666555 5799999887766666666666666665555555555667788
Q ss_pred HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHH
Q 044927 80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGF 157 (467)
Q Consensus 80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~ 157 (467)
.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+..........+...++.++ .....|.+++|.
T Consensus 176 ~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~ 255 (569)
T PRK10789 176 NDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQ 255 (569)
T ss_pred HHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence 999999999999999999999999999888777666555444433333332222222222221111 223458899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCce
Q 044927 158 VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLV 237 (467)
Q Consensus 158 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~ 237 (467)
+.++..|...+..|+..+...+..++.+.++.+|+.++++.+++.+. ..... .+..+.|+++|++|+|+++++++
T Consensus 256 l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~--~~~~~~I~~~~v~~~y~~~~~~~ 330 (569)
T PRK10789 256 LTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPV--PEGRGELDVNIRQFTYPQTDHPA 330 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCC--CCCCCcEEEEEEEEECCCCCCcc
Confidence 99999999999999999999999999999999999999986543221 11111 11234699999999997654569
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||++++|++++|+||||||||||+++|+|+|+|++|+|++||+++.+++..++|++++|+||+|++|++|++||+.
T Consensus 331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 410 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA 410 (569)
T ss_pred ccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 318 PL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 318 ~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
+. +..++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i 490 (569)
T PRK10789 411 LGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490 (569)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence 75 35788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|++++..+
T Consensus 491 ~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 491 LHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred HHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 999999878999999999999999999999999999999999999999999999998754
No 28
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=7.6e-76 Score=633.57 Aligned_cols=454 Identities=23% Similarity=0.349 Sum_probs=381.8
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++...+..++..++.++++++++++++|+++++++..+++..++...+.+..++..+...+..+++.
T Consensus 118 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (576)
T TIGR02204 118 VSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAG 197 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999998776655555555555555555566666666777889
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+++.++.+.++|.+..++..+...+......+......++..+...+..++ .....|.+++|.+
T Consensus 198 ~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~ 277 (576)
T TIGR02204 198 SYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTL 277 (576)
T ss_pred HHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999888877666554444443443333222222221111111 1224588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCC-Cce
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNT-PLV 237 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~-~~~ 237 (467)
.++..+...+..|+..+...+..++.+..+.+|+.++++.+++.+...... ....+..+.|+++||+|+|+++. +++
T Consensus 278 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~~i 355 (576)
T TIGR02204 278 GQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK--TLPVPLRGEIEFEQVNFAYPARPDQPA 355 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCc--cCCcCCCceEEEEEEEEECCCCCCCcc
Confidence 999999999999999999999999999999999999998654422111011 11112235699999999997532 569
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|++||.++++++..++|++++|+||+|++|++|++|||.
T Consensus 356 L~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~ 435 (576)
T TIGR02204 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIR 435 (576)
T ss_pred ccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
++. ..++++++++++.+++.++++++|+|++|.++++|.+||||||||++||||++++|+++|||||||+||+.+++.+
T Consensus 436 ~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i 515 (576)
T TIGR02204 436 YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515 (576)
T ss_pred cCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHH
Confidence 643 5678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
.+.+++..+++|+|+||||++.+..||||++|++|++++.|+|++++++++.|+++++.+
T Consensus 516 ~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 516 QQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred HHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 999999878999999999999999999999999999999999999999999999887643
No 29
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.2e-75 Score=629.29 Aligned_cols=452 Identities=21% Similarity=0.279 Sum_probs=381.4
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++...+..++..++.+++++++++.++|+++++++.++++..++...+.++.++..+...+..+++.
T Consensus 116 ~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (585)
T TIGR01192 116 LHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVF 195 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998888888888888888899999999999887776666666666666666666666666777889
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.++.+.+++.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 196 ~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l 275 (585)
T TIGR01192 196 KHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEV 275 (585)
T ss_pred HHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999888887776655544333332322222222222222222222 1234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.++..|+..+..++..+...+..++.+..+.+|+.++++.+++.... .......+..+.++++||+|+|+++ +++|
T Consensus 276 ~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l 351 (585)
T TIGR01192 276 IAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADAPELPNVKGAVEFRHITFEFANS-SQGV 351 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccCCCCCCCCCeEEEEEEEEECCCC-Cccc
Confidence 99999999999999999999999999999999999998765432111 1100011123469999999999754 3589
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||++||+||||||||||+++|+|+++|++|+|++||.++.+++.+++|++++||||+|++|++|++||+.+
T Consensus 352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 431 (585)
T TIGR01192 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL 431 (585)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
. +..++++++++++.+++++++.++|+|++|.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+.
T Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~ 511 (585)
T TIGR01192 432 GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511 (585)
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 5 356889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++++.|+++++.+
T Consensus 512 ~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (585)
T TIGR01192 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRS 570 (585)
T ss_pred HHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhC
Confidence 99998878999999999999999999999999999999999999999999999998766
No 30
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-78 Score=597.28 Aligned_cols=412 Identities=24% Similarity=0.391 Sum_probs=346.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccccHHHHHHHHHchHHHHHHccchHHHHHHHHHHHH
Q 044927 36 MASVTWPVLIVAIPTVIVAKYI----QGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVD 111 (467)
Q Consensus 36 ~~~~~~~l~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~ 111 (467)
...++||+.++++..+.++++. ..+-.+..|+......+++ ..-.|++-+.+|||-|++|++..++|.+...
T Consensus 354 ~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 354 FIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 3357999999988877776653 2222223333333222222 3567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--hCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044927 112 TDARLFFHSNAATEWLVLRIEALQNLIILTAALLI----VL--LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNN 185 (467)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 185 (467)
++.+..++.......+ ...++.++.+..... .+ ..+..++|.++.+.+|+.++..|+.++...+..+|..
T Consensus 430 ~Yqk~E~ks~~sLnfL----N~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~n 505 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFL----NIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKN 505 (790)
T ss_pred HHHHHHHHHHHHHHHH----HHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 8888766554433322 223333333322221 11 1367889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHH
Q 044927 186 IVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI 265 (467)
Q Consensus 186 ~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll 265 (467)
...+|+++++++.++|-.+.+ ..++ -....|.|+|+||+|.|+++ +++|+||||+++||+.+|+|||||+||||++
T Consensus 506 fiDmEnmfdllkee~eVvd~P--~a~p-l~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTim 581 (790)
T KOG0056|consen 506 FIDMENMFDLLKEEPEVVDLP--GAPP-LKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIM 581 (790)
T ss_pred hhhHHHHHHHhhcCchhhcCC--CCCC-ccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHH
Confidence 999999999998655432211 1111 11246789999999999865 4699999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCC
Q 044927 266 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLP 344 (467)
Q Consensus 266 ~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~ 344 (467)
++|.|+++.++|.|++||+||+.....++|++||+||||..||++||..||.+.. .+++|++.++++.+++++.|..+|
T Consensus 582 RlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP 661 (790)
T KOG0056|consen 582 RLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP 661 (790)
T ss_pred HHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999998764 688999999999999999999999
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCE
Q 044927 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDM 424 (467)
Q Consensus 345 ~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~ 424 (467)
+||+|+|||+|-.||||||||+||||+++++|.|++|||+||+||..+|+.|+.++.+...++|.|+|+||++++-+||.
T Consensus 662 egY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ 741 (790)
T KOG0056|consen 662 EGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADL 741 (790)
T ss_pred hhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCEEEEecChhhHhcc-CchHHHHHHHHHhh
Q 044927 425 FMVLSYGELVEYDLPSKLMET-NSAFSKLVAEYRSS 459 (467)
Q Consensus 425 i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~~~~~ 459 (467)
|+|+++|+|+|.|.|+||++. +|.|++||+.+...
T Consensus 742 ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAM 777 (790)
T ss_pred EEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhc
Confidence 999999999999999999986 89999999866543
No 31
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.8e-75 Score=624.35 Aligned_cols=413 Identities=23% Similarity=0.300 Sum_probs=342.0
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQ-GYYLSSARELMRMNGTTKAPI 79 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (467)
++|+++|++.++..+...+..++..++.++++++++++++|+++++++..+++..++. ..+.+..++..+...+..+++
T Consensus 113 ~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (529)
T TIGR02868 113 LGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQL 192 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999887765544443332 333333333334444566788
Q ss_pred HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHH
Q 044927 80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGF 157 (467)
Q Consensus 80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~ 157 (467)
.+++.|.++|+++||+|+.|+.+.+++.+..++..+...+......+......++..+...++.++. ....|.+++|.
T Consensus 193 ~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~ 272 (529)
T TIGR02868 193 YQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPAT 272 (529)
T ss_pred HHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhH
Confidence 9999999999999999999999999999888777666555444444333333333333222222221 22458899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCce
Q 044927 158 VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLV 237 (467)
Q Consensus 158 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~ 237 (467)
+.+++.+...+..++..+...+..++++.++.+|+.++++.+++.+...... +....+..+.|+++||+|+|++++ ++
T Consensus 273 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~-~v 350 (529)
T TIGR02868 273 LAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA-AGALGLGKPTLELRDLSFGYPGSP-PV 350 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC-CcccCCCCceEEEEEEEEecCCCC-ce
Confidence 9999999888999999999999999999999999999998765422110000 000112235699999999997543 59
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||++++||++||+||||||||||+++|+|+|+|++|+|++||+|++++ .+++|++|+||||+|++|++||+|||.
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~ 429 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLR 429 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred cC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 318 PL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 318 ~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
++ ++.++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|++||||||||+||+++|+.+
T Consensus 430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I 509 (529)
T TIGR02868 430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESEL 509 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 75 46789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccCh
Q 044927 397 QRIIREEFPGSTVITVAHRV 416 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l 416 (467)
++.+++..+++|+|+||||+
T Consensus 510 ~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 510 LEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHhcCCCEEEEEecCC
Confidence 99999988899999999995
No 32
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-74 Score=614.78 Aligned_cols=436 Identities=19% Similarity=0.247 Sum_probs=357.9
Q ss_pred chhcccHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 2 LQVSSDMSTMDFDLPS-AISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+++++|++.++.++.. .+..++..++.++ .++++++++|+++++++..+++.+++...+.+..++..+...+..+++.
T Consensus 102 ~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (544)
T TIGR01842 102 LQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRAN 180 (544)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 5788999999988877 4555555555444 4567889999998776544444444444444444444445556677888
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.............++..+...++.++ .....|.+++|.+
T Consensus 181 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l 260 (544)
T TIGR01842 181 NLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMM 260 (544)
T ss_pred hHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999888877666554443333333332223222222222222 1234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.+++.+...+..|+..+...+..++.+..+.+|+.++++.+++.+. ....+ +..+.++++||+|+|+++.+++|
T Consensus 261 ~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l 334 (544)
T TIGR01842 261 IAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTL 334 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCcccc
Confidence 9999999999999999999999999999999999999986544321 11111 12346999999999975545699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++++||||+|++|++|++||+.+
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 414 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
.. ..++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++|++||||||||+||+++++.+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~ 494 (544)
T TIGR01842 415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494 (544)
T ss_pred cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHH
Confidence 44 47889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927 398 RIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 398 ~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+.+++.. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 495 ~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 495 NAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999875 6899999999999998999999999999999999999864
No 33
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-74 Score=583.97 Aligned_cols=372 Identities=28% Similarity=0.397 Sum_probs=315.0
Q ss_pred ccccHHHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----H
Q 044927 75 TKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL-IV-----L 148 (467)
Q Consensus 75 ~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~ 148 (467)
+.......+.|++.+.++||.||.|++..++|.....+..+...+... ++. ++.+.+.+++.+.... ++ .
T Consensus 209 Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~---sl~-~lnfgQ~~iFsv~~~~im~l~~~gi 284 (591)
T KOG0057|consen 209 ADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSS---SLA-FLNFGQKAIFSVALTFIMVLGSNGI 284 (591)
T ss_pred hhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHh---HHH-HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334456788999999999999999999999999888776665443332 222 2334444433222211 11 1
Q ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEE
Q 044927 149 LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV 228 (467)
Q Consensus 149 ~~~~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~ 228 (467)
..+.++.|.+.....+..++..++..+...+..+.++...+.-++...+..... .+. +.+....++.|+|+||+|
T Consensus 285 ~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i---~~~--~~~i~~~~~~I~F~dV~f 359 (591)
T KOG0057|consen 285 AAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDI---QEA--ALPIELFGGSIEFDDVHF 359 (591)
T ss_pred hhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhh---hhc--cCCcccCCCcEEEEeeEE
Confidence 236788999888888889999999999999999988888877766544321111 111 111112456799999999
Q ss_pred EeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927 229 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 308 (467)
Q Consensus 229 ~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 308 (467)
.|+++ +++|+++||+|++||++||||+|||||||++|+|+||++ ++|+|++||+|+++++.+.+|+.|||||||..||
T Consensus 360 ~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF 437 (591)
T KOG0057|consen 360 SYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF 437 (591)
T ss_pred EeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccccc
Confidence 99865 459999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCC
Q 044927 309 RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387 (467)
Q Consensus 309 ~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~ 387 (467)
++||..||.++. ..+++++.++|++++++|.+.++|+||+|.+||+|..|||||||||+||||+++||||+++|||||+
T Consensus 438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~ 517 (591)
T KOG0057|consen 438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSA 517 (591)
T ss_pred chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccc
Confidence 999999998764 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927 388 IDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR 457 (467)
Q Consensus 388 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~ 457 (467)
||.+||+.+.+.+.+...++|+|+|.||+++++.||+|+++++|++.+.|+|+||++..+.|+++|..+.
T Consensus 518 LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 518 LDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT 587 (591)
T ss_pred cchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence 9999999999999998889999999999999999999999999999999999999998888888886543
No 34
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.3e-74 Score=612.02 Aligned_cols=423 Identities=21% Similarity=0.282 Sum_probs=352.5
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.+++.+...+..++..++.++++++++++++|+++++++..+++..++...+.+..++..+...+..+++.
T Consensus 104 ~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (529)
T TIGR02857 104 ATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLS 183 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999899999999888889999999999988776555544444444444444444444555667788
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 184 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~ 263 (529)
T TIGR02857 184 GHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATG 263 (529)
T ss_pred HHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999888777666554444444443333333333322221111 1223588999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.++..|+..+..|+..+...+..++.+..+.+|+.++++.+++... ....+ .+..+.|+++||+|+|+++.+++|
T Consensus 264 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~~~~--~~~~~~i~~~~v~f~y~~~~~~il 338 (529)
T TIGR02857 264 LFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KAPVT--AAPAPSLEFSGLSVAYPGRRAPAL 338 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcCCC--CCCCCeEEEEEEEEECCCCCcccc
Confidence 8888888889999999999999999999999999999975432211 11111 112347999999999976555699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++++||||+|++|++|++||+.+
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~ 418 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL 418 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
. +..++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.
T Consensus 419 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~ 498 (529)
T TIGR02857 419 ARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVT 498 (529)
T ss_pred cCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 5 357889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVL 428 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl 428 (467)
+.+++..+++|+|+||||+++++.||+|++|
T Consensus 499 ~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 499 EALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999987899999999999999999999986
No 35
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-74 Score=566.75 Aligned_cols=440 Identities=22% Similarity=0.337 Sum_probs=364.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHch
Q 044927 11 MDFDLPSAISLSAAATTDVFIIISVM-ASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQG 89 (467)
Q Consensus 11 v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 89 (467)
++..+...+...+..++-+....+++ ..++||++++++..++++.++...........++...++.+..++...|++-+
T Consensus 52 I~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLln 131 (497)
T COG5265 52 IETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLN 131 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhh
Confidence 44555555555666665555444444 46799999888777766665432222211222223334556777888999999
Q ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHHHHHHHHHHH
Q 044927 90 VVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFVGLSLSYALT 167 (467)
Q Consensus 90 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~ 167 (467)
.+++|.|+.|+.+..+|.+..+.+.++..+......|+.+....+........... .-+..|.++.|.++....+..+
T Consensus 132 fEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~q 211 (497)
T COG5265 132 FETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQ 211 (497)
T ss_pred hhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhh
Confidence 99999999999999999999888888776655555555543333222221111111 1123488999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCC-CCcccEEEEeEEEEeCCCCCceecceeEEEe
Q 044927 168 LSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASW-PSHGRIELEDLKVRYRPNTPLVLKGITCTFK 246 (467)
Q Consensus 168 l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~ 246 (467)
+..|+..++..+.++.++....++.+++++.+.+....++ .++-+ ...+.+.|+||+|.|.+. +++|+++||+++
T Consensus 212 ls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pd---a~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~ 287 (497)
T COG5265 212 LSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPD---APPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIP 287 (497)
T ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCC---CccccccccceEEEEEEEeecccc-chhhcCcccccc
Confidence 9999999999999999999999999999987654332211 11122 235679999999999865 469999999999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC-CCCHH
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDN 325 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~ 325 (467)
+|+++|+|||||+||||++++|.|||++++|.|.+||+|+.+...+.+|+.||.||||..||++|+..|+.+++ ..+++
T Consensus 288 ~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~e 367 (497)
T COG5265 288 LGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAE 367 (497)
T ss_pred CccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764 68999
Q ss_pred HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC
Q 044927 326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP 405 (467)
Q Consensus 326 ~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~ 405 (467)
+++.+++.+++++++..+|+||+|.|||+|-.||||||||++|||+++++|+||+|||+||+||.+||+.|+..|++..+
T Consensus 368 ev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~ 447 (497)
T COG5265 368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA 447 (497)
T ss_pred HHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927 406 GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454 (467)
Q Consensus 406 ~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~ 454 (467)
|+|.++|+||++++.+||.|+||++|+|+|.|+|+||++.+|.|++||.
T Consensus 448 ~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 448 GRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred CCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 9999999999999999999999999999999999999999999999985
No 36
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.1e-71 Score=640.23 Aligned_cols=451 Identities=17% Similarity=0.237 Sum_probs=364.3
Q ss_pred chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927 2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN 81 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (467)
+|+++|++.++..+...+..++..++++++.++++++++|+++++++.++++.+++...+.+..+...+......+...+
T Consensus 158 s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1466)
T PTZ00265 158 SDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMS 237 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999877777766666666666555555555556678899
Q ss_pred HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCC--------
Q 044927 82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPG-------- 151 (467)
Q Consensus 82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------- 151 (467)
.+.|+++|+++||+|+.|+++.++|.+..+...+...+......+......++..+..+++.++. .+..|
T Consensus 238 ~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~ 317 (1466)
T PTZ00265 238 IIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNN 317 (1466)
T ss_pred HHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Confidence 99999999999999999999999998877776665555444433333333332222222222221 11222
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeC
Q 044927 152 KHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYR 231 (467)
Q Consensus 152 ~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~ 231 (467)
.+++|.+.+++.+.......+..+...+..++.+.++.+|+.++++.+++.+.. ..... .+..+.|+++||+|+|+
T Consensus 318 ~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~~~---~~~~~~I~~~nVsf~Y~ 393 (1466)
T PTZ00265 318 DFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DDGKK---LKDIKKIQFKNVRFHYD 393 (1466)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCcc---CCCCCcEEEEEEEEEcC
Confidence 356665555444333323333344556678899999999999999876543211 11111 11123699999999997
Q ss_pred CCC-CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE-cCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927 232 PNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-DGLDICSMGLKDLRTKLSIIPQEPTLFR 309 (467)
Q Consensus 232 ~~~-~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 309 (467)
+.. .++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++ ||.++.+++..++|++||||||+|.+|+
T Consensus 394 ~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~ 473 (1466)
T PTZ00265 394 TRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS 473 (1466)
T ss_pred CCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh
Confidence 532 36999999999999999999999999999999999999999999999 5799999999999999999999999999
Q ss_pred ccHHHhcCcCC----------------------------------------------------------CCCHHHHHHHH
Q 044927 310 GSVRTNLDPLG----------------------------------------------------------MYSDNEIWEAM 331 (467)
Q Consensus 310 ~tv~enl~~~~----------------------------------------------------------~~~~~~~~~~~ 331 (467)
+||+|||.++. ..+++++++++
T Consensus 474 ~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~ 553 (1466)
T PTZ00265 474 NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553 (1466)
T ss_pred ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHH
Confidence 99999997531 13567899999
Q ss_pred HHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceE
Q 044927 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTV 409 (467)
Q Consensus 332 ~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tv 409 (467)
+.+++++++.++|+||||.+|++|.+||||||||++|||||+++|+|||||||||+||+.+++.+++.|++.. +|+|+
T Consensus 554 ~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~Tv 633 (1466)
T PTZ00265 554 KKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT 633 (1466)
T ss_pred HHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 48999
Q ss_pred EEEccChhHHhhcCEEEEEeCC-----------------------------------------------EEEEecChhhH
Q 044927 410 ITVAHRVPTITDSDMFMVLSYG-----------------------------------------------ELVEYDLPSKL 442 (467)
Q Consensus 410 i~itH~l~~~~~~d~i~vl~~G-----------------------------------------------~iv~~g~~~~l 442 (467)
|+||||+++++.||+|++|++| +|+|+|+|+||
T Consensus 634 IiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L 713 (1466)
T PTZ00265 634 IIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDAL 713 (1466)
T ss_pred EEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHH
Confidence 9999999999999999999986 59999999999
Q ss_pred hc-cCchHHHHHHHH
Q 044927 443 ME-TNSAFSKLVAEY 456 (467)
Q Consensus 443 ~~-~~~~~~~l~~~~ 456 (467)
++ .+|.|+.|++.+
T Consensus 714 ~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 714 MKNKNGIYYTMINNQ 728 (1466)
T ss_pred HhccCCcHHHHHhhh
Confidence 98 699999999655
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.1e-69 Score=575.63 Aligned_cols=427 Identities=18% Similarity=0.172 Sum_probs=335.4
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++.. +..++.+++.+++.++++++++|+++++++.++++.+++..++.++.++..+...+..+.+.
T Consensus 113 ~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (555)
T TIGR01194 113 IPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFN 191 (555)
T ss_pred hHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 47999999999998864 77888888888889999999999998887665555554444444444444444555667889
Q ss_pred HHHHHHHchHHHHHHccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMD--MFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 158 (467)
+.+.|.++|++++|+|+.++ ...+++.+..++..+.................++..+...+..++ ....+.++.|.+
T Consensus 192 ~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~g~l 270 (555)
T TIGR01194 192 EHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFA-AAMFASIDAAAI 270 (555)
T ss_pred HHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHH
Confidence 99999999999999999954 445566665555544433222221111111111111111111111 112267899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC---ccCCCC--CCCCCCcccEEEEeEEEEeCCC
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAI---IEETKP--PASWPSHGRIELEDLKVRYRPN 233 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~i~~~~vs~~y~~~ 233 (467)
.+++.|...+..|+..+.+.+..++++.++.+|+.++++.+++++.. .+.... .......+.|+++||+|+|++.
T Consensus 271 ~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~ 350 (555)
T TIGR01194 271 SAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP 350 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCC
Confidence 99999999999999999999999999999999999998642221110 000000 0001123579999999999753
Q ss_pred ---CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc
Q 044927 234 ---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 310 (467)
Q Consensus 234 ---~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 310 (467)
.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|++||.++.+++..++|++++||+|++++|++
T Consensus 351 ~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ 430 (555)
T TIGR01194 351 EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD 430 (555)
T ss_pred CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh
Confidence 23599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927 311 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390 (467)
Q Consensus 311 tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~ 390 (467)
|+++|.. +..++++++++++.+++++++.++|+|+||. .+||||||||++||||++++|++||||||||+||+
T Consensus 431 ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~ 503 (555)
T TIGR01194 431 LIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503 (555)
T ss_pred hhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 9999963 3567888999999999999999999999995 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HH-CCCceEEEEccChhHHhhcCEEEEEeCCEEEEe
Q 044927 391 ATDAILQRIIR-EE-FPGSTVITVAHRVPTITDSDMFMVLSYGELVEY 436 (467)
Q Consensus 391 ~~~~~i~~~l~-~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~ 436 (467)
++++.+.+.+. .. .+++|+|+||||+++++.||+|++|++|++++.
T Consensus 504 ~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999988764 33 468999999999999999999999999999875
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.3e-68 Score=618.08 Aligned_cols=438 Identities=18% Similarity=0.247 Sum_probs=338.0
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+|++++|++.++... ..+..++...+.+++++++++..-.+.+++.++++++...+...+.+..++..+...+..+++.
T Consensus 401 ~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~ 479 (1495)
T PLN03232 401 TNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRV 479 (1495)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999986 4566666665555554444332110111111111122212223333334444444455666788
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL 160 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (467)
+.+.|.++|+++||.|++|+.+.+++.+..++..+...+......+..........++..+......+..+.+++|.+.+
T Consensus 480 ~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~ 559 (1495)
T PLN03232 480 GIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFT 559 (1495)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 89999999999999999999999999887777666544443332222221111111111111111223457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCceec
Q 044927 161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLVLK 239 (467)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~L~ 239 (467)
++.+...+..|+..++..+..+.++.++++|+.++++.+++... ...+. .+..+.|+++|++|+|++. .+++|+
T Consensus 560 ~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~---~~~~~--~~~~~~I~~~~vsF~y~~~~~~~vL~ 634 (1495)
T PLN03232 560 SLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA---QNPPL--QPGAPAISIKNGYFSWDSKTSKPTLS 634 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---ccCCc--CCCCCcEEEEeeEEEcCCCCCCceee
Confidence 99999999999999999999999999999999999986543211 10010 1123469999999999753 356999
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL 319 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~ 319 (467)
|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++|+||||+|++|++||+|||.++
T Consensus 635 ~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg 702 (1495)
T PLN03232 635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFG 702 (1495)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcC
Confidence 99999999999999999999999999999999999998763 357799999999999999999999987
Q ss_pred CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH
Q 044927 320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~ 399 (467)
..+++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.
T Consensus 703 ~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 703 SDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782 (1495)
T ss_pred CccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999888654
Q ss_pred -HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 400 -IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 400 -l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
++...+++|+|+||||++.+..||+|++|++|+|++.|+|+|+++.++.|.++++.+
T Consensus 783 ~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~ 840 (1495)
T PLN03232 783 CMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840 (1495)
T ss_pred HhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhc
Confidence 565667899999999999999999999999999999999999999888898887654
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.9e-67 Score=615.63 Aligned_cols=437 Identities=17% Similarity=0.253 Sum_probs=339.0
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+|++++|++.++.++. .+..++...+.+++++++++..-.+.+++.++++++...+...+.+..++..+...+...++.
T Consensus 401 vnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~ 479 (1622)
T PLN03130 401 TNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRI 479 (1622)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999874 466666666666655555443222222222222222222333333333444444445667788
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL 160 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (467)
+.+.|.++|+++||.|++|+.+.+++.+..++..+...+......+..........++..+......+..+.+++|.+.+
T Consensus 480 ~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~ 559 (1622)
T PLN03130 480 GLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFT 559 (1622)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999999887776555433333222222211111111111111111223457899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCceec
Q 044927 161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLVLK 239 (467)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~L~ 239 (467)
++.+...+..|+..++..+..+.++.++++|+.++++.++..+. ...+. .+..+.|+++|++|+|++. .+++|+
T Consensus 560 ~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~---~~~~~--~~~~~~I~~~nvsf~y~~~~~~~vL~ 634 (1622)
T PLN03130 560 SLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL---PNPPL--EPGLPAISIKNGYFSWDSKAERPTLS 634 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cCCcc--cCCCCceEEEeeEEEccCCCCCceee
Confidence 88888888889989999999999999999999999976543211 00000 0112469999999999743 356899
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+ |++|+||+|+|++|++||+|||.+
T Consensus 635 ~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIreNI~f 701 (1622)
T PLN03130 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILF 701 (1622)
T ss_pred ceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHHHHHhC
Confidence 9999999999999999999999999999999999999 99974 458999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH-
Q 044927 319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ- 397 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~- 397 (467)
+..+++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.+.
T Consensus 702 g~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred CCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 7778889999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
+.++...+++|+|+|||+++.+..||+|++|++|+|++.|+|+|+++.++.|.++.+..
T Consensus 782 ~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~ 840 (1622)
T PLN03130 782 KCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA 840 (1622)
T ss_pred HHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhc
Confidence 55666667899999999999999999999999999999999999998888898887654
No 40
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.7e-68 Score=532.91 Aligned_cols=434 Identities=20% Similarity=0.270 Sum_probs=345.4
Q ss_pred cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Q 044927 5 SSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAA 84 (467)
Q Consensus 5 t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (467)
-+|.+++..|++..-...+-..--+-+++.++|.++||+.++.+.-.++.+.+...-....++-.+...+.....+++..
T Consensus 123 LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~ 202 (580)
T COG4618 123 LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLAD 202 (580)
T ss_pred hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 36888898888764333333333345567778888999877654433333222222222222223333345556677888
Q ss_pred HHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHHHHHH
Q 044927 85 ETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFVGLSL 162 (467)
Q Consensus 85 e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~ 162 (467)
-+.++.++|++.|+.....++|.+....+........-....+......+-.+....+..+ ++.+.+++|+|.+.+..
T Consensus 203 a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~S 282 (580)
T COG4618 203 ATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGS 282 (580)
T ss_pred HHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHH
Confidence 9999999999999999998888877766655443333222223222222222222222222 12245899999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceeccee
Q 044927 163 SYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGIT 242 (467)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~is 242 (467)
..+.....|+......+.++..++.|++|+.++++..++... .-..| .+.+.+.++++++.-++.++++|+++|
T Consensus 283 Il~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~m~LP---~P~g~L~Ve~l~~~PPg~~~pil~~is 356 (580)
T COG4618 283 ILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---RMPLP---APQGALSVERLTAAPPGQKKPILKGIS 356 (580)
T ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---CCCCC---CCCceeeEeeeeecCCCCCCcceecce
Confidence 777777788888888889999999999999999975443221 11111 235789999999988777788999999
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC-CC
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL-GM 321 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~-~~ 321 (467)
|++++||.+|||||||||||||.|+|.|.++|.+|.|++||-+++.++.+++-++|||+||+..||+|||.|||+-+ ++
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~ 436 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE 436 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999744 47
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q 044927 322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR 401 (467)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~ 401 (467)
.+++++.++++.++.||.|.++|+||||.+|+.|..|||||||||+|||||+.||.+++||||-|+||.+.|+.+.++|.
T Consensus 437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~ 516 (580)
T COG4618 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL 516 (580)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH-CCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927 402 EE-FPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 402 ~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+. .+|.|+|+||||++.+..+|+|++|++|++-.+|+.+|+++
T Consensus 517 ~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 517 AAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred HHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 85 46999999999999999999999999999999999999885
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-64 Score=541.55 Aligned_cols=417 Identities=17% Similarity=0.162 Sum_probs=313.0
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.+...+. .+..++.+++.++++++++++++|++++++++++++.+++..++.++.++..+...+..+++.
T Consensus 108 lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 186 (547)
T PRK10522 108 LASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLY 186 (547)
T ss_pred HHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999988765 467788888999999999999999999887776666655555555555555555556778899
Q ss_pred HHHHHHHchHHHHHHccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccH
Q 044927 81 NFAAETSQGVVSIRAFKMM---DMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLL--PGKHLP 155 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 155 (467)
+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..............+.. .+.+++.+.. .+....
T Consensus 187 ~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 262 (547)
T PRK10522 187 NDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMML---GAIGLVFYMANSLGWADT 262 (547)
T ss_pred HHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCh
Confidence 99999999999996 4443 3456666665555443332222111111111111111 1111111111 111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCC
Q 044927 156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTP 235 (467)
Q Consensus 156 g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~ 235 (467)
+...++..+...+..|+..+...+..++.+..+.+|+.++++.+++.+. ... .+ .+..+.++++||+|+|+++ +
T Consensus 263 ~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~~-~~--~~~~~~i~~~~v~f~y~~~-~ 336 (547)
T PRK10522 263 NVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PRP-QA--FPDWQTLELRNVTFAYQDN-G 336 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--ccc-cc--cCcCceEEEEEEEEEeCCC-C
Confidence 3333333344446678888888889999999999999998765433211 011 11 1112469999999999743 4
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+++++++..++|++++||||++++|++|+++|
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927 316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395 (467)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~ 395 (467)
....++++++++++.+++.+.+.. ++|. .+|.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 417 ---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~ 487 (547)
T PRK10522 417 ---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE 487 (547)
T ss_pred ---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 234567778878888777665542 3332 1478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927 396 LQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 396 i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g 437 (467)
+.+.+.+.. +++|+|+||||++.++.||+|++|++|++++..
T Consensus 488 i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 488 FYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 999987643 489999999999999999999999999999873
No 42
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-62 Score=548.88 Aligned_cols=437 Identities=20% Similarity=0.304 Sum_probs=347.5
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+|-++.|++.++++.. .+..+..+.+.+++++.+++..--+-+++.+.++++++-+.....+...+.+........++.
T Consensus 302 vNlms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Ri 380 (1381)
T KOG0054|consen 302 VNLMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERI 380 (1381)
T ss_pred hhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3668999999988765 456777777777777666653322223333333333333444444444444444455667788
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccHHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV-LLPGKHLPGFVG 159 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 159 (467)
...+|.++||++||.|++|+.|.++..+..++..+...+.................++.++.....+ ...+..++..+.
T Consensus 381 k~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF 460 (1381)
T KOG0054|consen 381 KLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAF 460 (1381)
T ss_pred HHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHH
Confidence 8999999999999999999999999988888777665555444444433333333333333333322 223556776777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCcee
Q 044927 160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLVL 238 (467)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~L 238 (467)
..+++...+..|+..++..+..+.++.+|++|+.+++..++..+..... ....+....++++|.+|++++. ..+.|
T Consensus 461 ~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL 537 (1381)
T KOG0054|consen 461 TSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTL 537 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccc
Confidence 7788888888899999999999999999999999999865443221110 1111234469999999999753 34589
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+||||+|++|+.+|||||.|||||||+.+|+|..+..+|++.++| .++||||+||+|+|||||||.|
T Consensus 538 ~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILF 604 (1381)
T KOG0054|consen 538 KDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILF 604 (1381)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhc
Confidence 999999999999999999999999999999999999999999999 3999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH-H
Q 044927 319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL-Q 397 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i-~ 397 (467)
+..+++++.+++++.|+|+++++.+|.|..|.+||+|.+|||||||||+||||+++|++|++||+|.|++|.++.+.+ .
T Consensus 605 G~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~ 684 (1381)
T KOG0054|consen 605 GSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFE 684 (1381)
T ss_pred CccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999986655 4
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~ 454 (467)
+.++...++||+|++||.++.++.||+|++|++|+|++.|+++|+++.++.|.++..
T Consensus 685 ~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~ 741 (1381)
T KOG0054|consen 685 ECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAH 741 (1381)
T ss_pred HHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhh
Confidence 566667789999999999999999999999999999999999999998888888743
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.3e-62 Score=569.45 Aligned_cols=440 Identities=18% Similarity=0.253 Sum_probs=332.8
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+|++++|++.+.... ..+..++...+.+++++++++..-.+.+++.+.+++++..+...+.+..++..+...+...+..
T Consensus 418 ~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~ 496 (1522)
T TIGR00957 418 VNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRI 496 (1522)
T ss_pred HHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999988755 4566666666666655555443222222222222222222222233333334444444566778
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLL--PGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~ 158 (467)
+.+.|.++|+++||.|++|+.+.+++++..++..+...+......+..........++..++.....+. .+.++.+.+
T Consensus 497 ~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~ 576 (1522)
T TIGR00957 497 KLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKA 576 (1522)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 899999999999999999999999998887766554333222222211111111111111111111222 245677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
..++.+...+..|+..++..+..+.++.++.+|+.++++.+++.+...... .. .....+.++++|++|+|+++.+++|
T Consensus 577 f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~~~~~~~l 654 (1522)
T TIGR00957 577 FVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERR-TI-KPGEGNSITVHNATFTWARDLPPTL 654 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc-cc-CCCCCCcEEEEEeEEEcCCCCCcee
Confidence 777777777888999999999999999999999999998654322110000 00 0011236999999999975445699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|++|++||+|||.+
T Consensus 655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~ 721 (1522)
T TIGR00957 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILF 721 (1522)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhc
Confidence 999999999999999999999999999999999999999999987 5999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927 319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~ 398 (467)
+..+++++..++++.|++.+++..+|+|++|.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+
T Consensus 722 g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~ 801 (1522)
T TIGR00957 722 GKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 801 (1522)
T ss_pred CCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 65567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 399 IIRE---EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 399 ~l~~---~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
.+.+ ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+.++.|.++...+
T Consensus 802 ~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 802 HVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred HHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence 8863 356899999999999999999999999999999999999998888888887643
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.5e-61 Score=520.50 Aligned_cols=414 Identities=13% Similarity=0.091 Sum_probs=335.6
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMAS-VTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPI 79 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (467)
++|+++|++.+...+...+..++..++.++++++.++. ++|.++++++...++..++.+++.++..+..+..++..+.+
T Consensus 198 ~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 277 (659)
T TIGR00954 198 DQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEY 277 (659)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 47999999999999999999999999999988888886 99999888877777777888888888777877778888999
Q ss_pred HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHh-C----
Q 044927 80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLI-ILT---AALLIVLL-P---- 150 (467)
Q Consensus 80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~-~---- 150 (467)
.+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+......+......++...+ ..+ .....++. .
T Consensus 278 ~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (659)
T TIGR00954 278 RYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAF 357 (659)
T ss_pred HHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999988888877766666555555555444443211 111 11111121 1
Q ss_pred CCccHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-------CCccCCC---------
Q 044927 151 GKHLPGFVGL-SLSY---ALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP-------AIIEETK--------- 210 (467)
Q Consensus 151 ~~~~~g~~~~-~~~~---~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~-------~~~~~~~--------- 210 (467)
|.++.|.... ++.| +..+..++..+...+..++++.++.+|+.++++.+++.. ...+...
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 5677776544 4444 456678888899999999999999999999997532210 0000000
Q ss_pred --C--CCCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 044927 211 --P--PASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 286 (467)
Q Consensus 211 --~--~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i 286 (467)
+ .......+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--- 513 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--- 513 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---
Confidence 0 0000123469999999999643 3599999999999999999999999999999999999999999998864
Q ss_pred CCCCHHHHhcccEEEcCCCccccccHHHhcCcC--------CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927 287 CSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358 (467)
Q Consensus 287 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L 358 (467)
|++++||||+|++|++|++||+.+. ...++++++++++.+++++++++ |.|+||..+ .+.+|
T Consensus 514 --------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~L 583 (659)
T TIGR00954 514 --------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVL 583 (659)
T ss_pred --------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCC
Confidence 5689999999999999999999753 12456788999999999999988 899999876 57799
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
|||||||++||||++++|+++|||||||+||+++++.+.+.+++. ++|+|+||||++.++.||++++|+.
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999874 8999999999999999999999973
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-59 Score=548.06 Aligned_cols=430 Identities=17% Similarity=0.232 Sum_probs=331.3
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+|++++|++.+...+... ..++...+.+++++++++....+.+++.+.++++++.+..++.+...+..+.......++.
T Consensus 182 ~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~ 260 (1490)
T TIGR01271 182 VSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERL 260 (1490)
T ss_pred HHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999977654 4566666666666666665555555554444444444444444444445555555667788
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL 160 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (467)
+.+.|.++|+++||.|++|+.|.+++.+..+...+...+......+..........++..++..... +.+..+++.+.+
T Consensus 261 ~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~-~~~~~~~~~~ft 339 (1490)
T TIGR01271 261 AITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYA-LIKGIILRRIFT 339 (1490)
T ss_pred HHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcHHHHHH
Confidence 9999999999999999999999999988887766654443333222222111111111111111111 223356676666
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC------
Q 044927 161 SLSYALTLSSIQ-VIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN------ 233 (467)
Q Consensus 161 ~~~~~~~l~~~~-~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~------ 233 (467)
+++++..+..++ ..++..+..+.++.+|++||.+++..++..+. . .. .....++++|++|.|+..
T Consensus 340 ~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~---~--~~---~~~~~i~~~~~~f~~~~~~~~~~~ 411 (1490)
T TIGR01271 340 TISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL---E--YN---LTTTEVEMVNVTASWDEGIGELFE 411 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc---c--cc---CCCCceEEecceEecCCccccccc
Confidence 677776666565 46888889999999999999999976543211 0 00 012358888888888421
Q ss_pred --------------------------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927 234 --------------------------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287 (467)
Q Consensus 234 --------------------------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~ 287 (467)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---- 487 (1490)
T TIGR01271 412 KIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---- 487 (1490)
T ss_pred cccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----
Confidence 13589999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 288 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 288 ~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
+|+||||+|++|++||+|||.++..+++++..++++.|++.+++..+|.|++|.+|++|.+|||||||||+
T Consensus 488 ---------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~ 558 (1490)
T TIGR01271 488 ---------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARIS 558 (1490)
T ss_pred ---------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHH
Confidence 49999999999999999999865555666777888999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRI-IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
||||++++|+++|||||||+||+++++.+.+. +.+..+++|+|++||+++.+..||+|++|++|+|++.|+++++.+.+
T Consensus 559 lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~ 638 (1490)
T TIGR01271 559 LARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR 638 (1490)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC
Confidence 99999999999999999999999999999874 66666799999999999999999999999999999999999998776
Q ss_pred chHHHHH
Q 044927 447 SAFSKLV 453 (467)
Q Consensus 447 ~~~~~l~ 453 (467)
+.|.+..
T Consensus 639 ~~~~~~~ 645 (1490)
T TIGR01271 639 PDFSSLL 645 (1490)
T ss_pred hHHHHHH
Confidence 6666655
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.9e-58 Score=534.57 Aligned_cols=440 Identities=18% Similarity=0.252 Sum_probs=340.4
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+|.+++|++.+..++.. +..++...+.+++++++++.+..+.+++.++++++...+..+..+......+.......+..
T Consensus 347 ~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri 425 (1560)
T PTZ00243 347 INMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARV 425 (1560)
T ss_pred HHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999998844 56777788888777777776666666665555555555555555555555555555677788
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL 160 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (467)
+...|.++|+++||.+++|+.|.+++.+..++..+...+......+..+.......++..++.+...+..+.++++.+++
T Consensus 426 ~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft 505 (1560)
T PTZ00243 426 KATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFP 505 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 89999999999999999999999999988777666544443333333322222222222222222233457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----Ccc---------C--C------C-------C-
Q 044927 161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPA----IIE---------E--T------K-------P- 211 (467)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~----~~~---------~--~------~-------~- 211 (467)
++.++..+..|+..++..+..+.++.+|++||.++++.++.... ..+ . . . +
T Consensus 506 ~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1560)
T PTZ00243 506 TIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPV 585 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999976531100 000 0 0 0 0
Q ss_pred --------------------------CCCCCCcccEEEEeEEEEeC----------------------------------
Q 044927 212 --------------------------PASWPSHGRIELEDLKVRYR---------------------------------- 231 (467)
Q Consensus 212 --------------------------~~~~~~~~~i~~~~vs~~y~---------------------------------- 231 (467)
+......+.+.++|+++.++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1560)
T PTZ00243 586 KLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTD 665 (1560)
T ss_pred cccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000112466777776532
Q ss_pred ----CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcc
Q 044927 232 ----PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 307 (467)
Q Consensus 232 ----~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 307 (467)
.+.+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ++|||+||+|++
T Consensus 666 ~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l 732 (1560)
T PTZ00243 666 DFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWI 732 (1560)
T ss_pred cccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCcc
Confidence 122458999999999999999999999999999999999999999999863 479999999999
Q ss_pred ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCC
Q 044927 308 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387 (467)
Q Consensus 308 f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~ 387 (467)
|++|++|||.++.....+++.++++.++++++++.+|+|++|.+|++|.+||||||||++||||++.+|+++|||||||+
T Consensus 733 ~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~sa 812 (1560)
T PTZ00243 733 MNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812 (1560)
T ss_pred CCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 99999999987554555677888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927 388 IDSATDAILQRI-IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455 (467)
Q Consensus 388 LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~ 455 (467)
||+++.+.+.+. +....+++|+|++||+++.+..||+|++|++|++++.|+++++++. +.|.++...
T Consensus 813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 813 LDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 999988877654 4444468999999999999999999999999999999999999864 456666543
No 47
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-57 Score=409.39 Aligned_cols=214 Identities=28% Similarity=0.457 Sum_probs=192.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC-CCHHHHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-MGLKDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~-~~~~~~r~~i 298 (467)
.|+++||+++|++. .+|+|||++|++||+++|+||||||||||+++|.||.+|++|+|.+||.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999743 49999999999999999999999999999999999999999999999987743 3677899999
Q ss_pred EEEcCCCccccc-cHHHhcCcCC----CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLG----MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
|+|||+..||+- |+.||+...+ ..+.+ ...+.++++|+.+..+..| .+||||||||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999975 9999996432 22333 3456788999999988888 78999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|||+.+|+++++|||||+|||+....+.+.++++. .|.|.|+|||.+..++. ||||++|++|+|+++|+|++++...
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 99999999999999999999999999999999865 58999999999999997 9999999999999999999998753
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-56 Score=438.50 Aligned_cols=237 Identities=37% Similarity=0.673 Sum_probs=222.4
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
+.|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++..++|+.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3589999999997544569999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 299 ~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
+|+||+|.+|++|+++|+.++...++++++++++.+++.+++.++|.++++.++++|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999975555677899999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
|||||||++||+.+++.+++.|++...++|+|+||||++.+..||||++|++|++++.|+|+++++..+.|++++...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 999999999999999999999998777899999999999998999999999999999999999999778888887643
No 49
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-54 Score=400.97 Aligned_cols=213 Identities=31% Similarity=0.489 Sum_probs=193.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+|+|||++|.+ +.+++|+||+|++||++.++|||||||||++|+|.|+++|++|+|++||.++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChH--HHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~--~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|-|..-||+. ||.|||...+ ..+. +++.+.++.++++ ++.++.| .+|||||+|||.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999975 9999997432 2333 4566788888885 4788888 789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
||+.+|+++++|||+++|||.++..+++.+.++.+ ++|+|+|||+++++- .+|||.+|++|+|+..++|+++++..
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999987543 899999999999765 59999999999999999999999754
No 50
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-54 Score=409.94 Aligned_cols=215 Identities=27% Similarity=0.441 Sum_probs=192.8
Q ss_pred EEEEeEEEEeCCC---CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHH
Q 044927 221 IELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDL 294 (467)
Q Consensus 221 i~~~~vs~~y~~~---~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~ 294 (467)
|++++||+.|+.+ ...+|+|+||+|++||++||+|+||||||||++++.+|-.|++|+|.+||+++..++. +.+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 2468999999999999999999999999999999999999999999999999888765 456
Q ss_pred hcccEEEcCCCcccc-ccHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 295 RTKLSIIPQEPTLFR-GSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~-~tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
|++||++||++.|++ .||.+|+.+. ...+. +++.+.++.+|+.+..++.| .+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999997 6999999752 12333 34567888999998888887 88999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+|||||+.+|+||+.|||||+|||+|.+.|.+.|++.. -|-|+++|||.|+.++. |||+.||++|+++|.|+..+++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998853 48999999999999997 9999999999999999999998
Q ss_pred ccC
Q 044927 444 ETN 446 (467)
Q Consensus 444 ~~~ 446 (467)
..+
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 743
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.1e-52 Score=400.64 Aligned_cols=234 Identities=35% Similarity=0.578 Sum_probs=212.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996434569999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
+||++.+|+.|+.||+.+.. ....+++.+.++..++.+++..+|.|+++..+..+.+||||||||++||||++.+|+++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999899999997532 23455666777888999999999999999998999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927 380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~ 454 (467)
||||||++||+.++..+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+++++++..+.|..+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 999999999999999999999998778999999999999988999999999999999999999887777776654
No 52
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-53 Score=382.15 Aligned_cols=218 Identities=26% Similarity=0.414 Sum_probs=194.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-----cEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-----GRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~-----G~i~i~g~~i~~~--~~~ 292 (467)
.++++|+++.|+. +.+|+|||++|++++++|++|||||||||+++++.|+.+..+ |+|.++|+++.+. +.-
T Consensus 7 ~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 5899999999974 349999999999999999999999999999999999998876 9999999999865 688
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCCC---C-C---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y-S---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~-~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
++|+++|+|+|.|..|+.||+||+.++.. . + ++-++++++.+.|++.+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 99999999999999999999999976422 1 1 3446778888988876543 2446678899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+||||||+-+|++|+||||||+|||.+..+|-+.|.+++++-|||+|||++..+.+ +|+..++..|+++|.|+.++++.
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999889999999999998766 89999999999999999999986
Q ss_pred cC
Q 044927 445 TN 446 (467)
Q Consensus 445 ~~ 446 (467)
..
T Consensus 238 ~P 239 (253)
T COG1117 238 NP 239 (253)
T ss_pred Cc
Confidence 54
No 53
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-52 Score=398.91 Aligned_cols=213 Identities=30% Similarity=0.460 Sum_probs=190.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++|
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 489999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHHHhcCcCC--------CCCH---HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 300 IIPQEPTL-FRGSVRTNLDPLG--------MYSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 300 ~v~Q~~~l-f~~tv~enl~~~~--------~~~~---~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
||||++.. |.-||+|-+.+++ ..++ +.+.++++.+++.++.++. ...||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 99999754 5569999875432 1122 2467789999998887764 2679999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+++|++|+|||||++||..++.++++.++++. +|+|+|++.|+++.+. .||++++|++|++++.|+|+|++.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999864 4799999999999765 599999999999999999999986
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
No 54
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-52 Score=417.33 Aligned_cols=225 Identities=22% Similarity=0.341 Sum_probs=196.5
Q ss_pred CCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC-
Q 044927 215 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS- 288 (467)
Q Consensus 215 ~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~- 288 (467)
|+..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 55667899999999997544569999999999999999999999999999999999996 579999999999973
Q ss_pred -CCHHHHhcccEEEcCCCccccccHHHhcCcCC---CCCHHH-----HHHHHHHcChHHHHHhCCCcccccccCCCCCCC
Q 044927 289 -MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDNE-----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359 (467)
Q Consensus 289 -~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~~~~~-----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS 359 (467)
.+...+|+.++||||+|++|++|++||+.+.. ..++++ +.++++.+++ +.++++.+++++.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCC
Confidence 34567899999999999999999999997432 133333 3445566554 3345677889999999
Q ss_pred hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927 360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 438 (467)
||||||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++++.. ||||++|++|+|++.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998778999999999999887 99999999999999999
Q ss_pred hhhHhccC
Q 044927 439 PSKLMETN 446 (467)
Q Consensus 439 ~~~l~~~~ 446 (467)
++++....
T Consensus 308 ~~~l~~~~ 315 (329)
T PRK14257 308 TKTIFIHP 315 (329)
T ss_pred HHHHhcCC
Confidence 99998643
No 55
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6e-52 Score=382.09 Aligned_cols=217 Identities=27% Similarity=0.483 Sum_probs=192.7
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 295 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r 295 (467)
..|++++|+++|++ +.+++|+||+|++||+++|+||||||||||+|+|.|+.+|++|+|.++|.++..++.. ++|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 36999999999964 4599999999999999999999999999999999999999999999999999988764 568
Q ss_pred cccEEEcCCCccccc-cHHHhcCcC----CCCCHHHHHH----HHHHcChHHH-HHhCCCcccccccCCCCCCChhHHHH
Q 044927 296 TKLSIIPQEPTLFRG-SVRTNLDPL----GMYSDNEIWE----AMEKCQLKAT-ISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~~-tv~enl~~~----~~~~~~~~~~----~~~~~~l~~~-i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
+++|+++|...||+. ||+||+.+. ...+++.+++ .++.+||... .+.+| .+|||||++|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999976 999999752 2345554443 5677888777 66777 7899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
++||||++.||+|+++||||+||||.+...+-+.|+++.+ +.|+++|||+++++.. |||++++.+|+|+..|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999888643 8999999999998876 899999999999999999999
Q ss_pred hccCch
Q 044927 443 METNSA 448 (467)
Q Consensus 443 ~~~~~~ 448 (467)
.+.+..
T Consensus 234 ~~sd~P 239 (263)
T COG1127 234 LASDDP 239 (263)
T ss_pred HhCCCH
Confidence 986543
No 56
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.7e-51 Score=397.81 Aligned_cols=238 Identities=50% Similarity=0.815 Sum_probs=215.8
Q ss_pred CcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 044927 217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 217 ~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~ 296 (467)
..+.++++|++++|++....+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35679999999999753345999999999999999999999999999999999999999999999999998888888899
Q ss_pred ccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 297 KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
.++|++|++.+|++|+++|+.+......++++++++..++.+.++.+|.|+++.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999754333455677888888999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHH
Q 044927 377 RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVA 454 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~ 454 (467)
++|||||||++||+.++..+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+. ++.|++++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 999999999999999999999999987778999999999999988999999999999999999999864 455665543
No 57
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.4e-51 Score=388.43 Aligned_cols=219 Identities=57% Similarity=0.967 Sum_probs=204.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754446999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
|+||++.+|+.|++||+.+......+++.++++..++.+++.++|.|+++.+++.+.+||||||||++|||||+++|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999765445667788899999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927 380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDL 438 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~ 438 (467)
||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999998777799999999999998899999999999998876
No 58
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-51 Score=389.63 Aligned_cols=231 Identities=32% Similarity=0.530 Sum_probs=209.5
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999996543358999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
+||++.+|+.|++||+.+.. .....++.+.++..++.++++.+|.|+++..+....+||||||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997542 33455667778888999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHH
Q 044927 380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~ 451 (467)
||||||++||+.++..+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+++++....+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence 999999999999999999999988778999999999999988999999999999999999998876655543
No 59
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-51 Score=402.22 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=192.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++||++.|++.. +++|+||+|++||+++|+||||||||||+++|+||.+|++|+|+++|.+++++++++ +.||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997533 899999999999999999999999999999999999999999999999999998875 7899
Q ss_pred EEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
+|||+..||+. ||+|||.|.-. .+ ++++.++++..++.+.+++.| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999975 99999986422 12 456788999999999999988 7899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|+++|++++||||+|+||++.+..+...|+++.+ +.|+|+||||..++.. +|||.||++|+|.+.|+|.|+....
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 9999999999999999999999999988888543 7899999999988775 9999999999999999999998643
No 60
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-50 Score=387.00 Aligned_cols=232 Identities=34% Similarity=0.577 Sum_probs=210.4
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|+++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 348999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
++|++.+|+.|++||+.+.. ..++.++.+.++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997542 34456677788888999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927 380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~ 453 (467)
||||||++||+.+...+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+++++....+.|+.++
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 99999999999999999999998766899999999999998899999999999999999999887666555544
No 61
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-50 Score=386.29 Aligned_cols=225 Identities=36% Similarity=0.620 Sum_probs=206.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999632 34899999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 300 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
|+||++.+|++|++||+.+.. .....++.++++..++.++++++|.|+++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999899999997543 2345667778888999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927 379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999988678999999999999888999999999999999998887654
No 62
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-51 Score=384.77 Aligned_cols=209 Identities=26% Similarity=0.403 Sum_probs=183.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++|++++|++. ++|+||||++++|++++|+||||||||||+|+|+|+.+|.+|+|.++|.+...... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999744 49999999999999999999999999999999999999999999999987765432 46899
Q ss_pred EEcCCC---ccccccHHHhcCcCCC--------C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 300 IIPQEP---TLFRGSVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 300 ~v~Q~~---~lf~~tv~enl~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
||||.. +-|+.||+|-+.++.. . +.+++.++++.+++.++.++. ...|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-----------i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-----------IGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-----------ccccCcHHHHH
Confidence 999965 3488899998854311 1 236788999999999887663 36799999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+.|||||+++|++|+|||||+|+|+.++..+.+.|+++++ |+||++||||++.+.. ||+|+.|+ ++++..|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999999999999999999999999999754 8999999999998875 99999996 6789999999998
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
No 63
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.8e-50 Score=384.17 Aligned_cols=231 Identities=35% Similarity=0.612 Sum_probs=207.1
Q ss_pred EEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 221 IELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 221 i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
++++|+++.|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999643 245899999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 300 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
|++|++.+|+.|++||+.+.. ....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999889999997532 2344566677788889999999999999999988999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHH
Q 044927 379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~ 451 (467)
+||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++......++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 233 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHH
Confidence 9999999999999999999999987678999999999999888999999999999999999988765544443
No 64
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.2e-50 Score=374.56 Aligned_cols=203 Identities=30% Similarity=0.436 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H-
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L- 294 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~- 294 (467)
++++||++.|..+. ..+|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.|+..++.++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 35899999999999999999999999999999999999999999999999999887543 3
Q ss_pred hcccEEEcCCCccccc-cHHHhcCc----CCCCC---HHHHHHHHHHcChHHHHH-hCCCcccccccCCCCCCChhHHHH
Q 044927 295 RTKLSIIPQEPTLFRG-SVRTNLDP----LGMYS---DNEIWEAMEKCQLKATIS-RLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~~-tv~enl~~----~~~~~---~~~~~~~~~~~~l~~~i~-~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
|++||||+|+..|.+. |+.||+.+ .+... .+.....++..++.+... +.| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999998865 99999962 22111 334556677778876655 555 7899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEE
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELV 434 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv 434 (467)
|||||||+.+|++++.||||.+||.++.+.+++.+++.. .|+|+|+|||++..+..|||++.|++|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999999863 378999999999999999999999999954
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.2e-50 Score=404.01 Aligned_cols=214 Identities=26% Similarity=0.420 Sum_probs=187.5
Q ss_pred EEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 044927 221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 295 (467)
Q Consensus 221 i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r 295 (467)
|+++||+++|+.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998877554 57
Q ss_pred cccEEEcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 296 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
++|||+||++.+|+ .|++||+.+.. ..+. +++.++++.+++.+..++.| .+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999986 69999996421 1222 34566777788777666554 789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+.+|++||||||||+||+.++..+++.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998643 7999999999999875 99999999999999999999976
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 3
No 66
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-50 Score=374.70 Aligned_cols=222 Identities=27% Similarity=0.375 Sum_probs=184.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.+++++|++.|+. ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999975 4599999999999999999999999999999999999999999999999987433 34799
Q ss_pred EEcCCCcccc-ccHHHhcCcCCC---C----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||+|++.||+ -||+||+.+.-. . ..+.+.+.++.+|+.++-++.| .+||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 9999999987 599999975321 1 1345778899999999999988 7899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEE---EecChhhHh
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELV---EYDLPSKLM 443 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv---~~g~~~~l~ 443 (467)
|+.+|++|+||||+++||+.|+..+++.+.+.. .++|+++|||+++++-. +|||++|.+ |+|. +..-+..-.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR~ 224 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRI 224 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCcc
Confidence 999999999999999999999999999998853 47999999999998665 999999999 4453 322221112
Q ss_pred ccCchHHHHHHHHHhh
Q 044927 444 ETNSAFSKLVAEYRSS 459 (467)
Q Consensus 444 ~~~~~~~~l~~~~~~~ 459 (467)
..+..|.++.++-.+.
T Consensus 225 ~~~~~f~~l~~~i~~~ 240 (248)
T COG1116 225 RGDPEFLELREELLEE 240 (248)
T ss_pred ccChHHHHHHHHHHHH
Confidence 3445566666554433
No 67
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-49 Score=377.74 Aligned_cols=218 Identities=32% Similarity=0.538 Sum_probs=198.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++...++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48999999999643345899999999999999999999999999999999999999999999999987777777788999
Q ss_pred EEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 300 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
|++|++.+|..|+.||+.+.. ....+++.+.++..++.+.++..|.|+++.+.+...+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999998889999996532 2345567788899999999999999999999888999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927 379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g 437 (467)
|||||||++||+.+...+.+.|++..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999976668999999999988789999999999998754
No 68
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-50 Score=381.80 Aligned_cols=214 Identities=32% Similarity=0.487 Sum_probs=194.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC-CCCHHHHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC-SMGLKDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~-~~~~~~~r~~i 298 (467)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||++++.|+++|++|+|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48899999999766 56999999999999999999999999999999999999999999999999988 47788999999
Q ss_pred EEEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
|||+|+| .+|..||.+.+.|+. ..+. +++.++++.+++.++.++.| .+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 689999999998653 2333 34667899999998877777 78999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
.+|+.+|++||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. |||+++|++|+++.+|+|+++.+.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999754 5899999999999886 999999999999999999998764
No 69
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-50 Score=400.33 Aligned_cols=212 Identities=25% Similarity=0.390 Sum_probs=191.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|+ ...+++|+||+|++||+++++|||||||||++++|+||..|++|+|.++|+++.+++++ ++.||
T Consensus 5 ~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG 80 (352)
T ss_pred eEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence 599999999997 34599999999999999999999999999999999999999999999999999998876 67899
Q ss_pred EEcCCCccccc-cHHHhcCcCCC----CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM----YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
+|||+..||+- ||+||+.|+-. ..+ +++.++++.+++.++..+.| .+|||||+||+||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999975 99999986422 232 36778999999999998888 789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
||+.+|++|+||||.|+||.+-+..++..+++.. .|.|.|+|||+-+++. .+|||.||++|+|...|+|+|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999999998888753 3899999999998765 59999999999999999999998654
No 70
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-50 Score=383.49 Aligned_cols=216 Identities=29% Similarity=0.442 Sum_probs=183.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~ 297 (467)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999963 359999999999999999999999999999999999999999999999999877654 467889
Q ss_pred cEEEcCCCccccc-cHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
++|+||++.+|+. |++||+.+.. ..+. +++.++++.+++.++.++ ...+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 9999999999876 9999996421 1222 234455666666544433 336899999999999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||||+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999999998864 37899999999998875 999999999999999999998764
Q ss_pred CchH
Q 044927 446 NSAF 449 (467)
Q Consensus 446 ~~~~ 449 (467)
...|
T Consensus 228 ~~~~ 231 (235)
T cd03261 228 DDPL 231 (235)
T ss_pred CChh
Confidence 4333
No 71
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-49 Score=368.29 Aligned_cols=215 Identities=27% Similarity=0.457 Sum_probs=185.6
Q ss_pred cEEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhc
Q 044927 220 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~r~ 296 (467)
.++++|+++.|+... .++|+||||+|.+||++||+|+||||||||.++|+|+.+|++|+|+++|.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997542 14899999999999999999999999999999999999999999999998776543 346788
Q ss_pred ccEEEcCCCcc---ccccHHHhcC----cCC-CCCHHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 297 KLSIIPQEPTL---FRGSVRTNLD----PLG-MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 297 ~i~~v~Q~~~l---f~~tv~enl~----~~~-~~~~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
.+.+|||||+- ..-||++-|. ..+ .-...+++++++.+++. ++..+.| .+|||||+||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999963 2347777663 111 12345688899999985 5667777 679999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||..+|++||||||||+||+..+..|++.+.+..+ +-|.|+|||+++.+.+ ||||+||++|+|+|.++.+++.+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998654 5699999999999997 99999999999999999999987
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 4
No 72
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.5e-50 Score=355.14 Aligned_cols=207 Identities=23% Similarity=0.378 Sum_probs=186.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~ 297 (467)
|+|+||+++|+++ +++|+|+||+|++||++-++||||||||||+|+|++...|++|+|.++|.|++.++.+ -+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999876 6699999999999999999999999999999999999999999999999999988655 47999
Q ss_pred cEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
||+|+||..|... ||+||+.+.- ..+ .+++.++++.+||.+-...+| .+|||||+||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999988754 9999997521 122 345677999999999999999 78999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
||++.+|++||-||||.+|||.+...|++.+.+.. .|.||++.||+.+.+.. --|++.+++|+++.+..+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999999864 59999999999999987 579999999999876543
No 73
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=365.43 Aligned_cols=212 Identities=29% Similarity=0.446 Sum_probs=186.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~r~ 296 (467)
.|+++||++.|+++ ..+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++..++ .+.+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999754 45999999999999999999999999999999999999999999999999998886 556788
Q ss_pred ccEEEcCCCcccc-ccHHHhcCcC------------CCCCHH---HHHHHHHHcChHHHHHhCCCcccccccCCCCCCCh
Q 044927 297 KLSIIPQEPTLFR-GSVRTNLDPL------------GMYSDN---EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 360 (467)
Q Consensus 297 ~i~~v~Q~~~lf~-~tv~enl~~~------------~~~~~~---~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSg 360 (467)
++|+++|++.|.+ .||.+|+..+ +.++.+ ...++++++++.+.... +..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 9999999999875 4999998422 223333 34567777887765543 3478999
Q ss_pred hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
||+|||+|||||+++|++++-|||+|+|||.+.+.+++.|++. ..|.|+|+.-|.++.++. ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 9999999999999999999999999999999999999999985 358999999999999875 9999999999999999
Q ss_pred ChhhHh
Q 044927 438 LPSKLM 443 (467)
Q Consensus 438 ~~~~l~ 443 (467)
+++|+-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
No 74
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-48 Score=367.76 Aligned_cols=206 Identities=59% Similarity=0.982 Sum_probs=181.6
Q ss_pred CCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 044927 216 PSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 295 (467)
Q Consensus 216 ~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r 295 (467)
|..+.++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++|
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 34457999999999975334599999999999999999999999999999999999999999999999999887777888
Q ss_pred cccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 296 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
+.++|+||++.+|++|++||+.+......+++.++++ ++.....|||||+||++||||++.+
T Consensus 82 ~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999997543334444333332 2345688999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecCh
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~ 439 (467)
|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999987678999999999999888999999999999988864
No 75
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-49 Score=391.12 Aligned_cols=220 Identities=22% Similarity=0.363 Sum_probs=182.8
Q ss_pred ccEEEEeEEEEeCCC---CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------
Q 044927 219 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------ 289 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~---~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~------ 289 (467)
..|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 469999999999642 13599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcccEEEcCCC--ccccccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCccc-ccccC
Q 044927 290 ----------GLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSD 353 (467)
Q Consensus 290 ----------~~~~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~ 353 (467)
....+|++++||+|+| .+|+.|++||+.+.. ..+.++..+. ..++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcC
Confidence 3456789999999998 688899999996532 1233222111 12233333 332 34556
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHh-hcCEEEEEeCC
Q 044927 354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTIT-DSDMFMVLSYG 431 (467)
Q Consensus 354 ~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl~~G 431 (467)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|++. .+++|+|+|||+++.+. .||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 67899999999999999999999999999999999999999999999875 35899999999999875 59999999999
Q ss_pred EEEEecChhhHhcc
Q 044927 432 ELVEYDLPSKLMET 445 (467)
Q Consensus 432 ~iv~~g~~~~l~~~ 445 (467)
++++.|+++++.+.
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999987653
No 76
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.8e-49 Score=347.38 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=186.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
+.+++|.|.|+... -.++++|++||++||+||||||||||+++|+||..|.+|+|.++|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~~----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHLP----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcce----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 56889999996321 368899999999999999999999999999999999999999999999877664 467999
Q ss_pred EcCCCccccc-cHHHhcCcCC----CC---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG----MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~----~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
++|+..||.- ||.+|+.++. .. ..+++..++.++|+..+.+++| .+||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999975 9999996532 12 2456888999999999999999 68999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccCc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNS 447 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~ 447 (467)
+++-|||+||||+|+|||.-+..+...+.++. ++.|++||||.++.+.. +||++++++|+|.++|+.+++++..+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999888753 47899999999998876 99999999999999999999987543
No 77
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-48 Score=384.40 Aligned_cols=215 Identities=26% Similarity=0.415 Sum_probs=189.2
Q ss_pred cEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 220 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
.++++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999887777888999
Q ss_pred EEEcCCCc--cccccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~~--lf~~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+|++|+|. ++..|++||+.+.. ..+ ++++.++++.+++.++.++.| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 45679999997531 122 234667788888877766655 68999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|||+.+|++|||||||++||+.+++.+.+.|++.. .|+|+|++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999999864 38999999999999878999999999999999999988754
No 78
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.9e-49 Score=375.41 Aligned_cols=211 Identities=31% Similarity=0.480 Sum_probs=181.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCccEEEEcCEeCCCCC--HHH
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILIDGLDICSMG--LKD 293 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~-----~p~~G~i~i~g~~i~~~~--~~~ 293 (467)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 478999999964 35999999999999999999999999999999999999 999999999999987766 556
Q ss_pred HhcccEEEcCCCccccccHHHhcCcCC---C-CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 294 LRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~---~-~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
++++++|+||++.+|..|++||+.+.. . .. ++++.++++..++.+...+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 788999999999998779999996421 1 11 2345566777777655444321 46899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
++|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987545899999999998775 999999999999999998764
No 79
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-48 Score=396.00 Aligned_cols=212 Identities=23% Similarity=0.352 Sum_probs=187.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++. ++.||
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999423 3599999999999999999999999999999999999999999999999999887654 47899
Q ss_pred EEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+ .||+||+.+.. ..+ .+++.++++.+++.++.++.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999997532 122 234667888888888777766 6899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999988643 7999999999998764 999999999999999999999764
No 80
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2e-48 Score=369.99 Aligned_cols=210 Identities=24% Similarity=0.367 Sum_probs=180.0
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++||++.|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999964324599999999999999999999999999999999999999999999999998654 3567788999
Q ss_pred EcCCCccc-cccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLF-RGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf-~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
++|++.+| ..|+++|+.+.. .... +++.++++..++.+..++. ..+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR-----------ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh-----------hhhCCHHHHHHHHHHHHH
Confidence 99999988 469999996421 1121 3345566666665544332 368999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987667999999999999865 999999999999999998875
No 81
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=9.9e-49 Score=371.05 Aligned_cols=202 Identities=24% Similarity=0.398 Sum_probs=174.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~ 297 (467)
++++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964334599999999999999999999999999999999999999999999999998766543 46788
Q ss_pred cEEEcCCCcccc-ccHHHhcCcCC---CC----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf~-~tv~enl~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
++|+||++.+|. .|++||+.+.. .. .++++.++++..++.+..++.| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 59999996421 11 1245667777777776665554 67999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
|||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|+|||+++.+.. ||++++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998864 47999999999999875 999999999975
No 82
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-48 Score=392.15 Aligned_cols=214 Identities=27% Similarity=0.422 Sum_probs=184.2
Q ss_pred EEEEeEEEEeCC--CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 044927 221 IELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 295 (467)
Q Consensus 221 i~~~~vs~~y~~--~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r 295 (467)
|+++||+++|++ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 1346999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cccEEEcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 296 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
++|+|+||++.+|. .|++||+.+.. ..+. +++.+.++..++.+..++. ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 88999999999886 59999996421 1222 2345566666665554443 3789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. |||+++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999864 37999999999999875 99999999999999999999976
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
No 83
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-48 Score=372.05 Aligned_cols=213 Identities=30% Similarity=0.477 Sum_probs=185.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35899999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCCccccccHHHhcCcCCC---CCHHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 300 IIPQEPTLFRGSVRTNLDPLGM---YSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~~~---~~~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
|+||++.+|+.|++||+.+... ...+++.+.++..++. +... ....+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999998899999974321 1233455566666663 2222 34478999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998863 37999999999999875 999999999999999999998764
No 84
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-48 Score=392.18 Aligned_cols=211 Identities=26% Similarity=0.404 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++++|
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999963 4589999999999999999999999999999999999999999999999999876643 57899
Q ss_pred EEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+. |++||+.+.. ..+ .+++.++++..++.++.++.| ..||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999997531 122 245667778888877666655 6899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|+|++.|+++++...
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988643 7999999999998764 999999999999999999999764
No 85
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-48 Score=381.48 Aligned_cols=212 Identities=27% Similarity=0.415 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+...++++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 35999999999999999999999999999999999999999999999999998877788888999
Q ss_pred EEcCCC--ccccccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 300 IIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 300 ~v~Q~~--~lf~~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|+||+| .+|..|+.+|+.+.. ..+ .+++.++++.+++.+..++.| .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 577889999997531 122 234567788888877766665 579999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
||+.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998864 4899999999999985 59999999999999999987653
No 86
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-48 Score=381.80 Aligned_cols=215 Identities=26% Similarity=0.433 Sum_probs=189.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999643446999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 300 IIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 300 ~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|+||++ .++..|+.||+.+.. ..+. +++.++++.+++.+++.+.| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 456679999997531 1222 34566778888877777665 589999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998643 7999999999999888999999999999999999988754
No 87
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-48 Score=383.47 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHh
Q 044927 221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLR 295 (467)
Q Consensus 221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r 295 (467)
++++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996422 35999999999999999999999999999999999999999999999999997653 35678
Q ss_pred cccEEEcCCC--ccccccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 296 TKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 296 ~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+++|||||+| .+|+.|++||+.+.. ..+.+ ++.++++.+++. +.+.......+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 567889999997532 12332 344556666553 01223344578999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998864 3799999999999875 59999999999999999999986
Q ss_pred c
Q 044927 444 E 444 (467)
Q Consensus 444 ~ 444 (467)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 88
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.8e-48 Score=372.88 Aligned_cols=215 Identities=25% Similarity=0.412 Sum_probs=179.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcccE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 299 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i~ 299 (467)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999963 359999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EEcCCCccccc-cHHHhcCcCCC-C------------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM-Y------------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~-~------------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
|+||++.+|.. |++||+.+... . ..++.. ..+.+.++.+ |++...+....+||||||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQRR 151 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHHH
Confidence 99999999876 99999964211 1 011111 1122333333 34444455668899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
++|||||+.+|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999999998864 58999999999999865 9999999999999999999886
Q ss_pred c
Q 044927 444 E 444 (467)
Q Consensus 444 ~ 444 (467)
.
T Consensus 232 ~ 232 (236)
T cd03219 232 N 232 (236)
T ss_pred c
Confidence 4
No 89
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.6e-48 Score=386.40 Aligned_cols=212 Identities=26% Similarity=0.418 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+ ...|+++|
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999987654 45788999
Q ss_pred EEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
|+||++.+|. .|++||+.+.. ..+.. ++.++++.+++.+..++ ...+||||||||++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA-----------KVGELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------chhhCCHHHHHHHHHHHH
Confidence 9999999886 59999996422 12222 23345555555433322 236799999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|+++|++|||||||+|||+.+++.+++.|+++. +|+|+|++||+++.++. ||||++|++|++++.|+++++.+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999864 48999999999999876 999999999999999999998643
No 90
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-48 Score=373.31 Aligned_cols=211 Identities=30% Similarity=0.458 Sum_probs=179.5
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~r~~ 297 (467)
++++||+++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999642 35999999999999999999999999999999999999999999999999988766 4567889
Q ss_pred cEEEcCCCcccc-ccHHHhcCcCCC------------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927 298 LSIIPQEPTLFR-GSVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361 (467)
Q Consensus 298 i~~v~Q~~~lf~-~tv~enl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG 361 (467)
++|+||++.+|. .|++||+.+... .. .+++.++++..++.+. ....+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCHH
Confidence 999999998886 599999963210 11 1234445555555433 33445789999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecC
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDL 438 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 438 (467)
||||++|||||+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999864 3799999999999988 599999999999999999
Q ss_pred hhhHh
Q 044927 439 PSKLM 443 (467)
Q Consensus 439 ~~~l~ 443 (467)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 98864
No 91
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=5.4e-48 Score=368.49 Aligned_cols=216 Identities=31% Similarity=0.504 Sum_probs=193.3
Q ss_pred cccEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 044927 218 HGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~ 296 (467)
.+.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999643 235999999999999999999999999999999999999999999999999887777777788
Q ss_pred ccEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 297 KLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
.++|++|++.+|+.|++||+.+.. .....++.+..+..++.+++..+|.|+++.+.....+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999997532 2233445555666778899999998999889999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGEL 433 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i 433 (467)
|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999987667999999999999988999999999974
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-48 Score=371.34 Aligned_cols=211 Identities=26% Similarity=0.377 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999964 359999999999999999999999999999999999999999999999999876543 256899
Q ss_pred EEcCCCcccc-ccHHHhcCcCCC---C----CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLGM---Y----SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~~---~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
|+||+|.+|. .|++||+.+... . .. +++.++++..++.+..++. ..+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999886 599999964311 1 11 2344556666665544443 4789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999999998864 37899999999998765 99999999999999999999875
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 3
No 93
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-48 Score=381.56 Aligned_cols=213 Identities=26% Similarity=0.411 Sum_probs=181.7
Q ss_pred EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----CCHHH
Q 044927 221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD 293 (467)
Q Consensus 221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~----~~~~~ 293 (467)
|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 258999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhcccEEEcCCC--ccccccHHHhcCcCC---CCCHH----HHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHH
Q 044927 294 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 294 ~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
+|+.++||+|+| .+|..|+.||+.+.. ..+.+ ++.++++.+++. ++.. ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 788999999998 688889999997532 12222 344556666653 2333 33478999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~ 441 (467)
||++|||||+.+|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||||++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998864 4899999999999885 599999999999999999999
Q ss_pred Hhc
Q 044927 442 LME 444 (467)
Q Consensus 442 l~~ 444 (467)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 865
No 94
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.2e-48 Score=391.88 Aligned_cols=211 Identities=25% Similarity=0.359 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. ++.+|
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3489999999999999999999999999999999999999999999999999876653 67899
Q ss_pred EEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+ .|++||+.+.. ..+ .+++.++++..++.++.++.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999997531 122 234566677777766655544 7899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|+++|++||||||||+||+.++..+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+++++...
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988643 7899999999998765 999999999999999999999864
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=5.4e-48 Score=372.46 Aligned_cols=211 Identities=30% Similarity=0.435 Sum_probs=179.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~ 297 (467)
++++||+++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2459999999999999999999999999999999999999999999999999877654 346788
Q ss_pred cEEEcCCCcccc-ccHHHhcCcCCC------------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927 298 LSIIPQEPTLFR-GSVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361 (467)
Q Consensus 298 i~~v~Q~~~lf~-~tv~enl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG 361 (467)
++|+||++.+|. .|++||+.+... .. .+++.++++..++.+..+ ....+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999998886 599999964210 01 123445555555554433 345789999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 438 (467)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998863 37899999999999864 99999999999999999
Q ss_pred hhhHh
Q 044927 439 PSKLM 443 (467)
Q Consensus 439 ~~~l~ 443 (467)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 98863
No 96
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-48 Score=366.14 Aligned_cols=202 Identities=28% Similarity=0.411 Sum_probs=173.0
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 359999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|. .|++||+.+.. ... .+++.++++..++.++.++.| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999998886 59999996421 111 223556666666665555443 68999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999863 37999999999998765 9999999999998765
No 97
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-48 Score=369.68 Aligned_cols=213 Identities=26% Similarity=0.423 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 295 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r 295 (467)
|+++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 2599999999999999999999999999999999999999999999999998876543 347
Q ss_pred cccEEEcCCCcccc-ccHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 296 TKLSIIPQEPTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~-~tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
+.++|+||++.+|. .|++||+.+. .... .+++.++++..++.+..++. ..+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 78999999999987 5999999642 1122 23455666666666555443 3689999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+.+|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999864 37999999999999875 99999999999999999988764
No 98
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.1e-48 Score=393.76 Aligned_cols=213 Identities=27% Similarity=0.447 Sum_probs=189.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.+++..++++++|
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 45999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEcCCCcc-ccccHHHhcCcCC-----CC---C---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 300 IIPQEPTL-FRGSVRTNLDPLG-----MY---S---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 300 ~v~Q~~~l-f~~tv~enl~~~~-----~~---~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
||+|++.+ |..|++||+.+.. .. . .+.+.++++.+++.++.++. ..+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999987 5679999996431 11 1 23467778888887665543 3689999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+. .|||+++|++|++++.|++++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999874 4789999999999986 5999999999999999999998753
No 99
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-48 Score=379.59 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 044927 220 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~ 292 (467)
.++++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 3599999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhcccEEEcCCC--ccccccHHHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhH
Q 044927 293 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ 362 (467)
Q Consensus 293 ~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq 362 (467)
.+|++||||||+| .+|+.|+.||+.+.. ..+.++ +.++++.++ +++ .......+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG-----------FSRDVMSQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC-----------CChhhhhCCcccCCHHH
Confidence 6788999999997 578889999997531 123222 233344444 432 2334568899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecCh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 439 (467)
|||++|||||+.+|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||||++|++|++++.|++
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999863 4899999999999876 5999999999999999999
Q ss_pred hhHhcc
Q 044927 440 SKLMET 445 (467)
Q Consensus 440 ~~l~~~ 445 (467)
+++.+.
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 998764
No 100
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.7e-48 Score=367.60 Aligned_cols=202 Identities=28% Similarity=0.410 Sum_probs=170.9
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH----H
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----L 294 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~----~ 294 (467)
++++||+++|++.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 45999999999999999999999999999999999999999999999999988765432 3
Q ss_pred hcccEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 295 RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+++++|+||++.+|.. |++||+.+.. ... ++++.++++..++.+..++ ...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 5689999999999876 9999996421 111 2234555666655544433 3478999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGEL 433 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~i 433 (467)
+|||||+.+|++|||||||++||+.++..+.+.|++..+ ++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998643 7999999999998888999999999974
No 101
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.1e-47 Score=371.23 Aligned_cols=215 Identities=27% Similarity=0.437 Sum_probs=182.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCCC--CHHH
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLKD 293 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~~ 293 (467)
++++||+++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 34899999999999999999999999999999999999998 99999999998753 3456
Q ss_pred HhcccEEEcCCCccccccHHHhcCcCC---C-CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 294 LRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
+++.++|+||++.+|+.|++||+.+.. . .+. +++.++++..++.+.+. ........+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 688999999999998899999996421 1 121 23455666666652221 12234457899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
++|||||+.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987666899999999998865 99999999999999999999875
No 102
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=378.56 Aligned_cols=214 Identities=27% Similarity=0.457 Sum_probs=184.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~ 297 (467)
.|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 58999999999633 35999999999999999999999999999999999999999999999999984 3345678889
Q ss_pred cEEEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 298 LSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 298 i~~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
++|+||++ .+|+.|++||+.+.. ..+. +.+.++++.+++.++.++ ...+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhC-----------CcccCCHHHHHHHHH
Confidence 99999998 567889999996421 1222 335556677777655443 347899999999999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988643 799999999999987 5999999999999999999998753
No 103
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1e-47 Score=388.19 Aligned_cols=211 Identities=27% Similarity=0.381 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...++ .+++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 359999999999999999999999999999999999999999999999999976654 357899
Q ss_pred EEcCCCccccc-cHHHhcCcCC-------CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG-------MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~-------~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
||||++.+|+. |++||+.+.. ..+ .+++.++++..++.++.++.| .+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 9999997531 112 234556777777766665554 689999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|+|++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988643 7899999999998765 99999999999999999999976
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 4
No 104
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-48 Score=380.15 Aligned_cols=214 Identities=27% Similarity=0.382 Sum_probs=181.2
Q ss_pred EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----CCHHH
Q 044927 221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD 293 (467)
Q Consensus 221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~----~~~~~ 293 (467)
++++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 359999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhcccEEEcCCC--ccccccHHHhcCcCC---CCCHH----HHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHH
Q 044927 294 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 294 ~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
.|+.+|||||+| .+|+.|++||+.+.. ..+.+ .+.++++.+++. +.. .....+||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq~ 151 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL-----------ARSPFELSGGQM 151 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh-----------hCCcccCCHHHH
Confidence 788899999997 578889999996431 12222 344556666664 222 233478999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 440 (467)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|+|++||+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998864 37999999999998864 9999999999999999999
Q ss_pred hHhcc
Q 044927 441 KLMET 445 (467)
Q Consensus 441 ~l~~~ 445 (467)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 88653
No 105
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=371.07 Aligned_cols=217 Identities=21% Similarity=0.399 Sum_probs=187.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHHhc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~ 296 (467)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 359999999999999999999999999999999999984 68999999999998877777888
Q ss_pred ccEEEcCCCccccccHHHhcCcCCC---C------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 297 KLSIIPQEPTLFRGSVRTNLDPLGM---Y------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~tv~enl~~~~~---~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
.++|+||++.+|+.|++||+.+... . .++++.++++.+++.+++.. ...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 9999999999999999999964311 1 11234556677766544332 234456789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999998766899999999999886 4999999999999999999998753
No 106
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=7.6e-48 Score=389.86 Aligned_cols=213 Identities=24% Similarity=0.366 Sum_probs=186.3
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc--cEEEEcCEeCCCCCHHHHh
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN--GRILIDGLDICSMGLKDLR 295 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~--G~i~i~g~~i~~~~~~~~r 295 (467)
.+.++++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 357999999999964 359999999999999999999999999999999999999999 999999999977655 35
Q ss_pred cccEEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 296 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
+.|+||+|++.+|+. |++||+.+.. ..+. +++.++++..++.++.++.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999975 9999997421 1222 34556677777776666655 689999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC---CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP---GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987543 6899999999998765 9999999999999999999998
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 228 ~~ 229 (362)
T TIGR03258 228 DA 229 (362)
T ss_pred hC
Confidence 64
No 107
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-48 Score=368.60 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=185.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE---eCCCCCHHHHhc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMGLKDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~---~i~~~~~~~~r~ 296 (467)
+|+++|+++.|+. ..+++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.+... .-.+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhc
Confidence 4788999999964 35899999999999999999999999999999999999999999999999 555433 3346
Q ss_pred ccEEEcCCCcccc-ccHHHhcCcCCC-----C----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 297 KLSIIPQEPTLFR-GSVRTNLDPLGM-----Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 297 ~i~~v~Q~~~lf~-~tv~enl~~~~~-----~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+||||+|+..||+ .||.+||.|+-. . ...++.+.++.+++..+-++.| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 7999999999986 599999987531 2 2345677788899988888888 78999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
||||||+.+|++|+||||+++||..-++.+...|++... +.|+++||||.+++.. ||||++|++|+|...|+|+|+.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999988532 8999999999998765 9999999999999999999997
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 227 ~~ 228 (345)
T COG1118 227 DH 228 (345)
T ss_pred cC
Confidence 64
No 108
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=367.54 Aligned_cols=208 Identities=23% Similarity=0.357 Sum_probs=177.0
Q ss_pred cEEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 044927 220 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~ 294 (467)
.++++||+++|+++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999998876543 3
Q ss_pred h-cccEEEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 295 R-TKLSIIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 295 r-~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
| +.++|+||++.+|+. |++||+.+. ..... +++.++++..++.+... ....+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHH
Confidence 3 679999999998875 999998641 11121 23455566665544433 3447899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDL 438 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~ 438 (467)
++||||++.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+..+|++++|++|+|++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999863 4799999999999999889999999999998875
No 109
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.4e-47 Score=364.61 Aligned_cols=211 Identities=27% Similarity=0.430 Sum_probs=176.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcccE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 299 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i~ 299 (467)
|+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 478999999964 359999999999999999999999999999999999999999999999999987776554 67799
Q ss_pred EEcCCCccccc-cHHHhcCcCCC-CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~-~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
|+||++.+|.. |++||+.+... ... +++.++++.. + +++........+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF---------P-RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH---------H-hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999886 99999964321 111 1122222222 1 1222334455789999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
++|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999998864 57999999999998765 9999999999999999988765
No 110
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.6e-47 Score=388.89 Aligned_cols=211 Identities=24% Similarity=0.374 Sum_probs=187.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.++
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999964 3589999999999999999999999999999999999999999999999999876654 57899
Q ss_pred EEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+. ||+||+.+.. ..+ .+++.++++..++.++.++.| .+||||||||++||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997531 122 234567788888888777776 6899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|+|++.|++++++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988643 799999999999876 4999999999999999999999864
No 111
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=380.74 Aligned_cols=215 Identities=21% Similarity=0.301 Sum_probs=181.5
Q ss_pred cEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--------
Q 044927 220 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-------- 288 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~-------- 288 (467)
.|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996432 258999999999999999999999999999999999999999999999887532
Q ss_pred ----------------CCHHHHhcccEEEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChH-HHHHh
Q 044927 289 ----------------MGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISR 342 (467)
Q Consensus 289 ----------------~~~~~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~-~~i~~ 342 (467)
.+...+++++|||||+| .+|..|++||+.+.. ..+. +++.++++.+++. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13456788999999986 578889999997532 1222 3345666666664 34443
Q ss_pred CCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-
Q 044927 343 LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT- 420 (467)
Q Consensus 343 l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~- 420 (467)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.
T Consensus 162 -----------~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 162 -----------SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred -----------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 347899999999999999999999999999999999999999999998864 4899999999999875
Q ss_pred hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 421 DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 421 ~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
.||||++|++|++++.|+++++.+.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 5999999999999999999998754
No 112
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5e-48 Score=390.28 Aligned_cols=200 Identities=25% Similarity=0.379 Sum_probs=177.8
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcccEEEcCCCccccc
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG 310 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~ 310 (467)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+..++ |+.++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999888777 7899999999999975
Q ss_pred -cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEee
Q 044927 311 -SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382 (467)
Q Consensus 311 -tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLD 382 (467)
|++||+.+.. ..+ .+++.++++.+++.++.++.| .+||||||||++|||||+.+|++||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999996421 122 244566778888776666655 689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 383 EATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 383 Epts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|||++||+.++..+++.+.++. .++|+|+|||+++.+. .||||++|++|++++.|+++++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999999998863 3799999999999865 5999999999999999999999864
No 113
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.9e-48 Score=380.24 Aligned_cols=212 Identities=28% Similarity=0.497 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|+. ...+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+...- ..+.|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4789999999963 24599999999999999999999999999999999999999999999999988765 677899999
Q ss_pred EEcCCCccccc-cHHHhcCcCC----C---CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG----M---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~----~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
|+||+|.+++. |++||+.+.. . ..++++.++++..++.+.. ......||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998865 9999997532 1 1245677888888877632 12347899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-C-ceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP-G-STVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|+.+|++|||||||+||||.+...+++.|+++.+ + +||+++||.++.++. ||||++|++|++++.|+++++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999754 5 799999999999987 99999999999999999998764
No 114
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-47 Score=370.81 Aligned_cols=217 Identities=23% Similarity=0.395 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~ 292 (467)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999974 589999999999864 3445
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCC---CC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+|+.++|+||++.+|+.|++||+.+.. .. . .+++.++++.+++.+.+. ...+....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 234555666666644322 1234456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987668999999999998865 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 237 ~~ 238 (253)
T PRK14242 237 TR 238 (253)
T ss_pred cC
Confidence 53
No 115
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-47 Score=369.83 Aligned_cols=215 Identities=26% Similarity=0.401 Sum_probs=181.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999742 359999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|. .|++||+.+.. ..+ .+++.++++..++.+ .........+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999996421 112 123344455544432 0123344578999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999864 37999999999998764 999999999999999999988653
No 116
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.5e-46 Score=368.83 Aligned_cols=217 Identities=24% Similarity=0.361 Sum_probs=192.0
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
.+.|+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 4569999999852 3489999999999999999999999999999999999999999999998 3
Q ss_pred cEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 298 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 298 i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
++|++|++.+|+.|++||+.+.....+.++.+.++.+++.+.+..+|.++++.+++.+..||||||||++|||||+.+|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997543333445566778888999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHH-HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHH
Q 044927 378 ILVLDEATASIDSATDAILQRII-REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~ 451 (467)
+|||||||++||+.++..+.+.+ +...+++|+|++||+++.+..||++++|++|++++.|+++++.+....|.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 254 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSS 254 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHH
Confidence 99999999999999999888754 555567999999999999888999999999999999999998865444443
No 117
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.2e-47 Score=360.74 Aligned_cols=198 Identities=27% Similarity=0.427 Sum_probs=171.9
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v 301 (467)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999642 359999999999999999999999999999999999999999999999998753 4567789999
Q ss_pred cCCC--ccccccHHHhcCcCC-C--CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 302 PQEP--TLFRGSVRTNLDPLG-M--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 302 ~Q~~--~lf~~tv~enl~~~~-~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
||++ .+|..|++||+.+.. . ...+++.++++.+++.++.++.| ..||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9997 367789999997532 1 12346777888888876665554 579999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927 377 RILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELV 434 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv 434 (467)
++|||||||++||+.+++.+.+.|++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999886 458999999999999875 9999999999975
No 118
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-47 Score=358.03 Aligned_cols=199 Identities=26% Similarity=0.427 Sum_probs=180.4
Q ss_pred EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 3599999999999999999999999999999999999999999999998 5
Q ss_pred cEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 298 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 298 i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
|+|+||+|.+|+.|++||+.+.....+++..++++.+++.+++..+|.|+++.+++...+||+|||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997644445566777888889999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHH-HHHHH-CCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 378 ILVLDEATASIDSATDAILQR-IIREE-FPGSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~-~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
++||||||++||+.+.+.+.+ .+++. .+++|+|++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888887 45554 34799999999999988899999999985
No 119
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-47 Score=364.82 Aligned_cols=208 Identities=26% Similarity=0.407 Sum_probs=179.4
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 478999999964 3599999999999999999999999999999999999999999999999988653 3566788999
Q ss_pred EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+++. |+++|+.+.. ... ++++.++++..++.+..++.| .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999988875 9999995421 111 234566777777766555443 68999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
+.+|+++||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999998853 3 7899999999998875 999999999999999988764
No 120
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-47 Score=361.95 Aligned_cols=202 Identities=29% Similarity=0.431 Sum_probs=176.0
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++|+++.|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 478999999964 35999999999999 99999999999999999999999999999999999987766 677889999
Q ss_pred EcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|.. |++||+.+. ...+ .+++.++++..++.+..+..| .+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI-----------GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch-----------hhCCHHHHHHHHHHHHH
Confidence 9999999876 999998642 1111 234566777777766554433 67999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
+.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987667999999999999875 9999999999998765
No 121
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-47 Score=372.47 Aligned_cols=215 Identities=27% Similarity=0.445 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999643446999999999999999999999999999999999999999999999999998777778889999
Q ss_pred EEcCCCc--cccccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 300 IIPQEPT--LFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 300 ~v~Q~~~--lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|+||++. ++..|++||+.+.. ..+.+ .+.++++..++.++.++.+ .+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 9999983 45679999996421 12222 2455667777766655544 789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999864 3 4899999999998888999999999999999999887653
No 122
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-47 Score=374.57 Aligned_cols=214 Identities=24% Similarity=0.399 Sum_probs=186.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 48899999999643 34899999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCCc--cccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 300 IIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 300 ~v~Q~~~--lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|+||++. +|..|+.||+.+.. ..+. +.+.++++.+++.+...+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999973 67789999996421 1222 23566777777776666554 689999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .|||+++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988643 799999999999985 5999999999999999999998753
No 123
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-47 Score=375.60 Aligned_cols=214 Identities=23% Similarity=0.412 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---cEEEEcCEeCCCCCHHHHhc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~---G~i~i~g~~i~~~~~~~~r~ 296 (467)
.++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 599999999996433459999999999999999999999999999999999999988 89999999998777777888
Q ss_pred ccEEEcCCCc--cccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 297 KLSIIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 297 ~i~~v~Q~~~--lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
++||+||++. +++.|+.||+.+.. ..+. +++.++++.+++.++.++.| .+|||||+||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHH
Confidence 9999999984 56789999996431 1222 33566778888877666655 789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+..|||+++|++|++++.|+++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998864 3799999999999988899999999999999999998765
No 124
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2e-47 Score=362.55 Aligned_cols=205 Identities=26% Similarity=0.443 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
++++||+++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996431 159999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
+|+||++.+|.. |++||+.+.. ... .+++.++++..++.+..++ ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999885 9999995321 112 2344556666666655444 34789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
|++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998864 47999999999998765 9999999999998764
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-47 Score=373.59 Aligned_cols=212 Identities=25% Similarity=0.440 Sum_probs=183.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhcccE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLS 299 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~r~~i~ 299 (467)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999633 34999999999999999999999999999999999999999999999999987765 356788999
Q ss_pred EEcCCCc--cccccHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 300 IIPQEPT--LFRGSVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 300 ~v~Q~~~--lf~~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|+||+|. ++..|+.||+.+... .+ .+++.++++..++.++.++. ...||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999985 466799999965321 22 23345566667776655543 3789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
||+.+|++|||||||++||+.++..+.+.++++. +++|+|++||+++.+..|||+++|++|++++.|+++++..
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998864 4899999999999998899999999999999999998765
No 126
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-47 Score=389.03 Aligned_cols=211 Identities=25% Similarity=0.338 Sum_probs=184.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999876543 56799
Q ss_pred EEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+. |++||+.+.. ..+ .+++.++++..++.++.++.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997531 122 234566777777766655554 6899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|+.+|++|||||||++||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998863 37899999999998765 999999999999999999999763
No 127
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3e-47 Score=365.76 Aligned_cols=211 Identities=28% Similarity=0.396 Sum_probs=179.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 689999999963 3599999999999999999999999999999999999999999999999998776544 3458999
Q ss_pred EcCCCccc-cccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLF-RGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf-~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.++ ..|+++|+.+.. .... +++.+.++..++ +........+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999875 569999996421 1221 123334444444 3334455578999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999864 47999999999999888999999999999999999998764
No 128
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-47 Score=368.77 Aligned_cols=217 Identities=24% Similarity=0.353 Sum_probs=183.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~~ 292 (467)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 3599999999999999999999999999999999999997 48999999998753 2345
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCCC----CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+|+.++|+||++.+|..|++||+.+... .. ++.+.++++.+++.+.+. ..+ .....+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~----~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKL----NTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHH----hCCcccCCHHHHH
Confidence 67889999999999998999999964211 11 233455666666533221 122 3345789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998668999999999999765 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 238 ~~ 239 (254)
T PRK14273 238 FN 239 (254)
T ss_pred hC
Confidence 53
No 129
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.2e-47 Score=359.67 Aligned_cols=202 Identities=26% Similarity=0.408 Sum_probs=176.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999953 3599999999999999999999999999999999999999999999999988654 456788999
Q ss_pred EcCCCcccc-ccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
+||++.+|. .|++||+.+.. ...++++.++++..++.+..++.+ ..||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV-----------KGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH-----------hhCCHHHHHHHHHHHHHhcCC
Confidence 999998875 69999996421 224556777888888876655533 679999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 377 RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
+++||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998864 47999999999998875 9999999999998765
No 130
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2e-47 Score=384.19 Aligned_cols=211 Identities=24% Similarity=0.414 Sum_probs=179.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.+|
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999987643 46788999
Q ss_pred EEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
|+||++.+|. .|+.||+.+.. ..+.. .+.++++.+++.+. ......+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHHHHHHH
Confidence 9999998875 59999996422 12222 22334444444332 223346899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|+++|++|||||||+|||+.++..+++.|+++. .|+|+|++||+++.++. ||||++|++|++++.|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999864 48999999999999875 99999999999999999999865
No 131
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-47 Score=373.14 Aligned_cols=216 Identities=26% Similarity=0.407 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 220 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
.++++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 23589999999999999999999999999999999999999999999999999877777788999
Q ss_pred EEEcCCCc--cccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~~--lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+|+||++. ++..|+.||+.+.. .... +++.++++.+++.++..+.| ..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP-----------ARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 56789999996421 1222 23456777777776655543 68999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|||+++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999988643 79999999999998889999999999999999999987643
No 132
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.6e-47 Score=365.16 Aligned_cols=211 Identities=27% Similarity=0.459 Sum_probs=178.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcccE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 299 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i~ 299 (467)
++++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999887765543 56799
Q ss_pred EEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
|+||++.+|+. |++||+.+.. .... +++.+.++..++. ........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHHH
Confidence 99999999886 9999996421 1111 1223344444443 33344557899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998864 47899999999987765 99999999999999999998864
No 133
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.1e-47 Score=378.69 Aligned_cols=211 Identities=25% Similarity=0.390 Sum_probs=179.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+++|
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999998653 356688999
Q ss_pred EEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
|+||++.+|. .|++||+.+.. ..+.. ++.++++.+++.+..+ ....+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-----------VRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CchhhCCHHHHHHHHHHHH
Confidence 9999998885 59999996321 12222 2334455555543332 2346799999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|+.+|++|||||||++||+.+...+.+.|++.. +|+|+|++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999863 58999999999999875 99999999999999999999864
No 134
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-47 Score=368.11 Aligned_cols=219 Identities=26% Similarity=0.413 Sum_probs=185.7
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CC
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MG 290 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~ 290 (467)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 346999999999964 359999999999999999999999999999999999986 589999999999853 34
Q ss_pred HHHHhcccEEEcCCCccccccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 291 ~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
...+|++++|+||++.+|+.|+++|+.+.. ..+. +++.++++.+++.+.+ ....+....+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 567788999999999999899999996421 1222 3455566666653322 122345567899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 441 (467)
|||++|||||+++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999998865 99999999999999999999
Q ss_pred Hhcc
Q 044927 442 LMET 445 (467)
Q Consensus 442 l~~~ 445 (467)
+...
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 8753
No 135
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-47 Score=371.80 Aligned_cols=215 Identities=21% Similarity=0.388 Sum_probs=184.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754345899999999999999999999999999999999999999999999999998877778889999
Q ss_pred EEcCCCc-cc-cccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 300 IIPQEPT-LF-RGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 300 ~v~Q~~~-lf-~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|+||++. +| ..|+++|+.+.. .... +++.++++..++.++.+. ...+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999985 44 558999986421 1122 234556666666554433 34789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|++.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+..||||++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998864 37899999999998888999999999999999999998754
No 136
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-47 Score=362.66 Aligned_cols=204 Identities=26% Similarity=0.340 Sum_probs=174.3
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
++++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996421 359999999999999999999999999999999999999999999999998763 36789
Q ss_pred EEEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
+|+||++.+|. .|++||+.+.. ... .+++.++++..++.+...+.| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999887 59999996421 111 234566777777766555544 679999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEe--CCEEEEecChh
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLS--YGELVEYDLPS 440 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~--~G~iv~~g~~~ 440 (467)
||+.+|+++||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998863 37999999999998765 99999999 79999987653
No 137
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.2e-47 Score=378.17 Aligned_cols=210 Identities=21% Similarity=0.367 Sum_probs=182.5
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 459999999999999999999999999999999999999999999999999876 34567889999
Q ss_pred EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|+. |+.||+.+.. ..+ .+++.++++..++.+.. ......||||||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 9999999876 9999996421 112 22344555555554443 344578999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+++|++|||||||+|||+.+.+.+++.++++.+++|+|++||+++.++. ||||++|++|++++.|+++++.+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999998778999999999998876 99999999999999999999865
No 138
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.8e-47 Score=360.67 Aligned_cols=203 Identities=28% Similarity=0.438 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 295 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r 295 (467)
++++||+++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 35999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cccEEEcCCCcccc-ccHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 296 -TKLSIIPQEPTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 296 -~~i~~v~Q~~~lf~-~tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+.++|+||++.+|+ .|++||+.+. .... .+++.++++..++.+..++ ....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 67999999999886 5999999642 1122 1234455666665544443 3478999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEE
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELV 434 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv 434 (467)
+|||||+++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+..||++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998864 378999999999998889999999999985
No 139
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.5e-47 Score=360.09 Aligned_cols=200 Identities=33% Similarity=0.469 Sum_probs=171.2
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v 301 (467)
+++|++++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999964324599999999999999999999999999999999999999999999999999877777788899999
Q ss_pred cCCCc--cccccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 302 PQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 302 ~Q~~~--lf~~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
||++. ++..|++||+.+.. ... .+++.+.++..++.+.+++. ...||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 99984 56789999996421 122 12345566666665554443 378999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
+++|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998864 47999999999999887 99999999985
No 140
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-47 Score=372.68 Aligned_cols=215 Identities=25% Similarity=0.402 Sum_probs=187.4
Q ss_pred cEEEEeEEEEeCCC----CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHH
Q 044927 220 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDL 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~----~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~ 294 (467)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999642 245999999999999999999999999999999999999999999999999987643 3567
Q ss_pred hcccEEEcCCCc--cccccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 295 RTKLSIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 295 r~~i~~v~Q~~~--lf~~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
+++++|+||+|. +|..|+.+|+.+.. ..+ ++++.++++.+++.++.++.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 66668999996532 112 234667788888877776655 6899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
++|||||+.+|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+..|||+++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999863 389999999999998889999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 141
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-47 Score=370.79 Aligned_cols=212 Identities=28% Similarity=0.424 Sum_probs=185.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEcCCCccccc-cHHHhcCcCCC--------C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
|+||++.++.. |+.||+.+... . .++++.++++.+++.+.+++.| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877654 99999964210 1 1234566777778776655544 679999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998863 37999999999999864 99999999999999999998864
No 142
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.2e-47 Score=365.44 Aligned_cols=212 Identities=22% Similarity=0.345 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i 298 (467)
.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999964 359999999999999999999999999999999999999999999999999887765543 5579
Q ss_pred EEEcCCCccccc-cHHHhcCcCCCC---------------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGMY---------------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~~---------------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
+|+||++.+|++ |++||+.+.... .++++.++++..++ +.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHH
Confidence 999999999986 999999642110 01123334444433 333445557899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 441 (467)
+||++||||++.+|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987668999999999999875 99999999999999999999
Q ss_pred Hhc
Q 044927 442 LME 444 (467)
Q Consensus 442 l~~ 444 (467)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 864
No 143
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.7e-47 Score=379.89 Aligned_cols=215 Identities=26% Similarity=0.409 Sum_probs=182.3
Q ss_pred cEEEEeEEEEeCCC-----------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 044927 220 RIELEDLKVRYRPN-----------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 288 (467)
Q Consensus 220 ~i~~~~vs~~y~~~-----------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~ 288 (467)
.++++||+++|+.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2358999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhcccEEEcCCC--cccc-ccHHHhcCc----C-CCCCHH----HHHHHHHHcChH-HHHHhCCCccccccc
Q 044927 289 MGLK---DLRTKLSIIPQEP--TLFR-GSVRTNLDP----L-GMYSDN----EIWEAMEKCQLK-ATISRLPMLLDSSVS 352 (467)
Q Consensus 289 ~~~~---~~r~~i~~v~Q~~--~lf~-~tv~enl~~----~-~~~~~~----~~~~~~~~~~l~-~~i~~l~~g~~t~v~ 352 (467)
++.. .+|++++||+|+| .+++ .|+.+|+.. . ...+.+ .+.++++.+++. +..++
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 8654 3578899999998 4664 699999852 1 112322 334556666662 23333
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEe
Q 044927 353 DEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLS 429 (467)
Q Consensus 353 ~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~ 429 (467)
...+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||++|+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 3478999999999999999999999999999999999999999999988643 7999999999999875 99999999
Q ss_pred CCEEEEecChhhHhcc
Q 044927 430 YGELVEYDLPSKLMET 445 (467)
Q Consensus 430 ~G~iv~~g~~~~l~~~ 445 (467)
+|+|++.|+++++++.
T Consensus 237 ~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 237 LGHAVELGTYDEVYHN 252 (331)
T ss_pred CCEEEEEcCHHHHHcC
Confidence 9999999999999864
No 144
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.2e-47 Score=364.52 Aligned_cols=212 Identities=23% Similarity=0.367 Sum_probs=180.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHhccc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL 298 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~i 298 (467)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 35999999999999999999999999999999999999999999999999987643 34667889
Q ss_pred EEEcCCCcccc-ccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~~lf~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+|+||++.+|. .|++||+.+.. .... +++.++++..++.+..++ ....||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999998886 59999996421 1111 233445555555444433 3478999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||++++|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998864 47999999999999865 999999999999999999998753
No 145
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-47 Score=373.04 Aligned_cols=211 Identities=27% Similarity=0.391 Sum_probs=182.1
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcc
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTK 297 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~----r~~ 297 (467)
.++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56789999964 358999999999999999999999999999999999999999999999999887665443 467
Q ss_pred cEEEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
++|+||++.+|. .|++||+.+.. ... .+++.++++.+++.+.+++.| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 59999996421 111 234566777788877666655 57999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|||+++|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999998863 37999999999998765 999999999999999999999753
No 146
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-47 Score=367.66 Aligned_cols=211 Identities=27% Similarity=0.446 Sum_probs=184.2
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999887777778888999
Q ss_pred EcCCCccccc-cHHHhcCcCC-C-------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG-M-------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~-~-------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
+||++.++.+ |+.||+.+.. . .. ++++.++++..++.+..++. ...|||||+||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHHH
Confidence 9999988876 9999996421 0 01 23455666767776554443 47899999999999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998864 47999999999998865 99999999999999999998864
No 147
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.8e-47 Score=359.33 Aligned_cols=202 Identities=25% Similarity=0.406 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 478999999964 3599999999999999999999999999999999999999999999999998765432 467999
Q ss_pred EcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|. .|++||+.+.. .... +++.++++..++.+..++.| .+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999885 59999996421 1222 23455666677766555443 68999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
+.+|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37999999999998875 9999999999999875
No 148
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-47 Score=373.09 Aligned_cols=215 Identities=30% Similarity=0.471 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 044927 220 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~ 292 (467)
.++++|++++|++.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996421 3599999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhcccEEEcCCC--ccccccHHHhcCcCC---CCCHH----HHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhH
Q 044927 293 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 293 ~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
..++.++|+||+| .+|..|+.||+.+.. ....+ .+.++++.+++. ++. .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6678899999998 577789999996421 12222 234455555553 232 33457899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 440 (467)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 48999999999998864 9999999999999999999
Q ss_pred hHhcc
Q 044927 441 KLMET 445 (467)
Q Consensus 441 ~l~~~ 445 (467)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 87653
No 149
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=368.21 Aligned_cols=218 Identities=23% Similarity=0.443 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~ 291 (467)
..++++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 46999999999964 359999999999999999999999999999999999987 689999999998853 456
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCCC---CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
.++|+.++|+||++.+|..|++||+.+... .. ++++.++++.+++... ++........+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHHH
Confidence 677889999999999998899999975321 11 2234445555554321 2233445567899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeC-----------CEE
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSY-----------GEL 433 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~-----------G~i 433 (467)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 99999999999999999999999999999999999987667999999999998865 999999996 679
Q ss_pred EEecChhhHhcc
Q 044927 434 VEYDLPSKLMET 445 (467)
Q Consensus 434 v~~g~~~~l~~~ 445 (467)
++.|+++++...
T Consensus 243 ~~~~~~~~~~~~ 254 (269)
T PRK14259 243 VEFNETKKIFNS 254 (269)
T ss_pred EEeCCHHHHHhC
Confidence 999999999753
No 150
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.1e-46 Score=368.01 Aligned_cols=216 Identities=25% Similarity=0.421 Sum_probs=179.8
Q ss_pred cEEEEeEEEEeCCC-------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 044927 220 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~-------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~ 292 (467)
.++++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999631 34699999999999999999999999999999999999999999999999999877654
Q ss_pred H---HhcccEEEcCCCc--cc-cccHHHhcCcC----CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927 293 D---LRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358 (467)
Q Consensus 293 ~---~r~~i~~v~Q~~~--lf-~~tv~enl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L 358 (467)
+ +|+.++|+||++. ++ ..|++||+.+. .... ++++.++++..++.+ .........|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 3 5778999999983 44 36999998421 1111 123444555554421 1233455789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVE 435 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~ 435 (467)
|||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998643 7999999999999875 99999999999999
Q ss_pred ecChhhHhcc
Q 044927 436 YDLPSKLMET 445 (467)
Q Consensus 436 ~g~~~~l~~~ 445 (467)
.|+++++...
T Consensus 232 ~g~~~~~~~~ 241 (265)
T TIGR02769 232 ECDVAQLLSF 241 (265)
T ss_pred ECCHHHHcCC
Confidence 9999999863
No 151
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=343.97 Aligned_cols=212 Identities=28% Similarity=0.421 Sum_probs=185.0
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
+++.+++++|++. ..+++|+||+++.||++||.|||||||||++++|++++.|++|+|++||.|.... +...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 6889999999763 3389999999999999999999999999999999999999999999999998764 5667999999
Q ss_pred EcCCCcccc-ccHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFR-GSVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
++-+..++. .|++|||.+++. .+ +.++.+..+..++.+.+++ +..++|.||||||+|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-----------Rv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-----------RVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-----------HHhhhchhhHHHHHHHHHH
Confidence 997777775 599999976532 22 2345556666666666554 3467999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+++|++++|||||||||..+.+.+++.+++.+. |+++|+.||.++.++. ||||+++++|+++..|+++++.+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999998764 9999999999999995 999999999999999999998764
No 152
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.9e-47 Score=348.23 Aligned_cols=178 Identities=31% Similarity=0.582 Sum_probs=164.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999975433599999999999999999999999999999999999999999999999988665 5667889999
Q ss_pred EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
+||++.+|+.|++||+ ...||||||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999997 36799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927 381 LDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g 437 (467)
|||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999876789999999999999889999999999998764
No 153
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.3e-47 Score=369.60 Aligned_cols=213 Identities=22% Similarity=0.340 Sum_probs=181.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~ 296 (467)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999963 3589999999999999999999999999999999999999999999999998766543 3577
Q ss_pred ccEEEcCCCccccc-cHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 297 KLSIIPQEPTLFRG-SVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~-tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
+++|+||++.+|.. |+.||+.+. ...+. +++.+.++..++.+..++ ...+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999876 999999631 11122 233445566665544333 33789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999864 37899999999998875 99999999999999999999876
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 234 ~ 234 (269)
T PRK11831 234 N 234 (269)
T ss_pred C
Confidence 4
No 154
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=368.41 Aligned_cols=218 Identities=24% Similarity=0.395 Sum_probs=185.4
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CC
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MG 290 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~ 290 (467)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 347999999999963 3599999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHHhcccEEEcCCCccccccHHHhcCcCC---CC--C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927 291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361 (467)
Q Consensus 291 ~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~--~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG 361 (467)
...+|+.++|+||++.+|+.|+.||+.+.. .. + .+++.++++.+++.+.+. ...+....+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 556788999999999999889999996421 11 1 233455666666644322 1233456789999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 440 (467)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999987667899999999999865 9999999999999999999
Q ss_pred hHhc
Q 044927 441 KLME 444 (467)
Q Consensus 441 ~l~~ 444 (467)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14235 248 KMFT 251 (267)
T ss_pred HHHh
Confidence 9875
No 155
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.5e-47 Score=366.18 Aligned_cols=212 Identities=24% Similarity=0.410 Sum_probs=181.0
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----------
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---------- 290 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~---------- 290 (467)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999964 35999999999999999999999999999999999999999999999999987543
Q ss_pred ---HHHHhcccEEEcCCCcccc-ccHHHhcCcCC----CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927 291 ---LKDLRTKLSIIPQEPTLFR-GSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358 (467)
Q Consensus 291 ---~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L 358 (467)
...+|+.++|++|++.+|. .|+.||+.+.. ... ++++.++++..++.+..++. ..+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence 2356788999999999885 69999996421 111 22345556666665554443 4789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEE
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVE 435 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~ 435 (467)
|||||||++|||||+++|+++||||||++||+.++..+.+.|++.. .++|+|++||+++.+. .|||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 3789999999999986 499999999999999
Q ss_pred ecChhhHhcc
Q 044927 436 YDLPSKLMET 445 (467)
Q Consensus 436 ~g~~~~l~~~ 445 (467)
.|+++++.+.
T Consensus 228 ~g~~~~~~~~ 237 (252)
T TIGR03005 228 QGKPDEIFRQ 237 (252)
T ss_pred eCCHHHHhcC
Confidence 9999998753
No 156
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.1e-47 Score=359.41 Aligned_cols=200 Identities=22% Similarity=0.384 Sum_probs=173.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~ 297 (467)
++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999876543 46788
Q ss_pred cEEEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
++|+||++.+|. .|++||+.+.. ... +++++++++..++.+..++.| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 59999986421 111 245566777777776655544 67999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
|||+.+|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 48999999999999886 99999999985
No 157
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=365.10 Aligned_cols=217 Identities=27% Similarity=0.388 Sum_probs=183.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCC--CCCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC--SMGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~--~~~~~ 292 (467)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999986 44555
Q ss_pred HHhcccEEEcCCCccccc-cHHHhcCcCC---CC--CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 293 DLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MY--SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~--~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
.+|++++|+||++.+|+. |+.||+.+.. .. .. +++.++++..++.+.+. ........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHHH
Confidence 678899999999999875 9999996421 11 11 23445555555533221 12344567899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 441 (467)
|||++|||||+++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999998765 99999999999999999999
Q ss_pred Hhcc
Q 044927 442 LMET 445 (467)
Q Consensus 442 l~~~ 445 (467)
+...
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 8753
No 158
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=364.37 Aligned_cols=217 Identities=29% Similarity=0.420 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHHHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLKDL 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~~~~~ 294 (467)
.++++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999984 69999999999988777788
Q ss_pred hcccEEEcCCCccc-cccHHHhcCcCC---C--CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 295 RTKLSIIPQEPTLF-RGSVRTNLDPLG---M--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 295 r~~i~~v~Q~~~lf-~~tv~enl~~~~---~--~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
|+.++|+||++.+| ..|+.||+.+.. . .. .+++.++++.+++.+.+. ........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence 89999999999765 569999996421 1 11 134455666666543221 1223445789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999886 59999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 54
No 159
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=364.87 Aligned_cols=212 Identities=27% Similarity=0.396 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|+++.|++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999964 35999999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEcCCCcc-ccccHHHhcCcCCC---C----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTL-FRGSVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~l-f~~tv~enl~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
|+||++.+ +..|++||+.+... . .++++.++++..++.+..++. ..+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99999987 56799999964211 1 123455666777766544443 47899999999999999
Q ss_pred hc------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927 372 LL------KRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 372 l~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 442 (467)
|+ .+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998864 4799999999999887 5999999999999999999988
Q ss_pred hc
Q 044927 443 ME 444 (467)
Q Consensus 443 ~~ 444 (467)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
No 160
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-47 Score=384.40 Aligned_cols=212 Identities=23% Similarity=0.390 Sum_probs=184.8
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.+.++ .++.+
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 358999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|||||++.+|+. |+.||+.+.. ..+. +++.++++..++.++.++.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 9999997531 1222 34556677777776666555 689999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||+++|++|||||||++||+.++..+.+.|++.. .+.|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998887753 37999999999998764 999999999999999999999864
No 161
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-47 Score=371.83 Aligned_cols=215 Identities=27% Similarity=0.404 Sum_probs=180.0
Q ss_pred EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHH
Q 044927 221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKD 293 (467)
Q Consensus 221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~~ 293 (467)
++++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996422 3599999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhcccEEEcCCC--ccccccHHHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 294 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 294 ~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
+|+.|+|+||++ .+|+.|++||+.+.. ..+.++ +.++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 788899999997 578889999996421 122222 233444444431 1223445789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
|++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998864 47999999999998865 999999999999999999988
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
No 162
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-47 Score=347.08 Aligned_cols=221 Identities=25% Similarity=0.420 Sum_probs=188.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i 298 (467)
.++++||+..|++ ..+|+++||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|.|+...++++. |..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4899999999975 359999999999999999999999999999999999999999999999999999988764 7779
Q ss_pred EEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
+||||.-.+|+. ||+||+......... +......+++..+-+| -+..+...++.+|||||+|.++|||||+.+|+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999975 999999753221111 0001111334444555 45566677889999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927 378 ILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
+|+|||||.||-|.-.+.|.+.|+++.+ +.||++|.++...+. .+||.+||++|+|+.+|+.+||.+..
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999763 679999999999866 59999999999999999999998653
No 163
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=363.09 Aligned_cols=212 Identities=26% Similarity=0.372 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC------CCHHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS------MGLKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~------~~~~~ 293 (467)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999964 359999999999999999999999999999999999999999999999998731 22356
Q ss_pred HhcccEEEcCCCccccc-cHHHhcCcC--C--CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 294 LRTKLSIIPQEPTLFRG-SVRTNLDPL--G--MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~--~--~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
+|++++|+||++.+|.. |+.||+... . .... +++.+.++..++.++.++. ..+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHH
Confidence 67899999999999875 999999521 1 1121 2334455555555444443 4789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
|++||||++.+|+++||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999864 48999999999999865 999999999999999999887
Q ss_pred hc
Q 044927 443 ME 444 (467)
Q Consensus 443 ~~ 444 (467)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 54
No 164
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.4e-46 Score=362.52 Aligned_cols=213 Identities=26% Similarity=0.380 Sum_probs=179.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--------H
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--------L 291 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~--------~ 291 (467)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999986532 2
Q ss_pred HHHhcccEEEcCCCcccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 292 KDLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
..+|+.++|+||++.+|+ .|++||+.+. ..... +.+.++++..++.+ .......+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCChhhCChHH
Confidence 456788999999998886 5999999642 11121 12333444444433 3344558899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 440 (467)
|||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998864 48999999999999875 9999999999999999999
Q ss_pred hHhcc
Q 044927 441 KLMET 445 (467)
Q Consensus 441 ~l~~~ 445 (467)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98753
No 165
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=369.17 Aligned_cols=212 Identities=28% Similarity=0.426 Sum_probs=179.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhccc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTKL 298 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~i 298 (467)
++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 35999999999999999999999999999999999999999999999999985 23345678889
Q ss_pred EEEcCCCc--cccccHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEPT--LFRGSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~~--lf~~tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+|+||++. ++..|+.+|+.+. ..... +++.++++..++.++.++ ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence 99999985 5667899998642 11222 234456666666554433 3478999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|||+.+|++|||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998864 47899999999999865 999999999999999999988654
No 166
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=6.5e-47 Score=357.95 Aligned_cols=201 Identities=25% Similarity=0.387 Sum_probs=172.8
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~ 297 (467)
++++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 359999999999999999999999999999999999999999999999999877654 346788
Q ss_pred cEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
++|+||++.+|.. |++||+.+.. ... ++++.++++..++.+..++.| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999998874 9999996421 112 234556677777766555444 68999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
|||+.+|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999863 58999999999999875 999999999974
No 167
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=368.02 Aligned_cols=213 Identities=23% Similarity=0.369 Sum_probs=185.4
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 36999999999964 3599999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEcCCCcccc-ccHHHhcCcCC--C------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 299 SIIPQEPTLFR-GSVRTNLDPLG--M------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 299 ~~v~Q~~~lf~-~tv~enl~~~~--~------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+|+||++.+|. .|++||+.+.. . .. ++++.++++..++.++.++ ...+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998875 59999996421 1 11 2245566777777655444 3478999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+||||++.+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998864 37899999999998765 9999999999999999999886
Q ss_pred c
Q 044927 444 E 444 (467)
Q Consensus 444 ~ 444 (467)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
No 168
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-46 Score=358.97 Aligned_cols=206 Identities=25% Similarity=0.337 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 044927 220 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~ 294 (467)
.++++|++++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999996432 24899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcccEEEcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 295 -RTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 295 -r~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
++.++|+||++.+|.. |+.||+.+. .... .+++.++++..++.+..++.| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3579999999998875 999998631 1111 234566777777776665554 6799999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhhcCEEEEEeCCEEEEe
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITDSDMFMVLSYGELVEY 436 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~ 436 (467)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998863 3 7899999999999888999999999999764
No 169
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=360.45 Aligned_cols=212 Identities=25% Similarity=0.372 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i 298 (467)
.++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998776554 57789
Q ss_pred EEEcCCCccccc-cHHHhcCcCCC-CCHHH----HHHHHHHc-ChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGM-YSDNE----IWEAMEKC-QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~-~~~~~----~~~~~~~~-~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
+|++|++.+|+. |+.+|+.+... ....+ +.++++.. ++.+ ........||||||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999875 99999964211 12122 22222222 1221 1223457899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .|||+++|++|++++.|+++++..
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998864 4899999999999765 599999999999999999999874
No 170
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=372.11 Aligned_cols=216 Identities=24% Similarity=0.347 Sum_probs=178.4
Q ss_pred ccEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----C-C
Q 044927 219 GRIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----M-G 290 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~----~-~ 290 (467)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999996432 248999999999999999999999999999999999999999999999998752 1 3
Q ss_pred HHHHhcccEEEcCCC--ccccccHHHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927 291 LKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361 (467)
Q Consensus 291 ~~~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG 361 (467)
...+|+.++|+||++ .+|..|++||+.+.. ....++ +.+.++..++. . ........+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~-------~---~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP-------E---DYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC-------h---hHhcCChhhCCHH
Confidence 456788999999998 467789999996421 122222 22334443331 1 1223455789999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 438 (467)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998864 37999999999998764 99999999999999999
Q ss_pred hhhHhc
Q 044927 439 PSKLME 444 (467)
Q Consensus 439 ~~~l~~ 444 (467)
++++..
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 988764
No 171
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=361.19 Aligned_cols=216 Identities=25% Similarity=0.408 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i 298 (467)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4889999999963 35999999999999999999999999999999999999999999999999998776544 56789
Q ss_pred EEEcCCCccccc-cHHHhcCcCCC----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
+|+||++.+|.. |+.||+.+... .+.++... .+.+.++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999998875 99999964321 11111111 112233332 2333344556789999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
.+|++|||||||++||+.++..+.+.+++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999998754 48999999999987764 99999999999999999999875
No 172
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=365.27 Aligned_cols=217 Identities=22% Similarity=0.375 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCC--CCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICS--MGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~--p---~~G~i~i~g~~i~~--~~~~ 292 (467)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999964 359999999999999999999999999999999999997 3 58999999999863 3445
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCCC----CCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~----~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+|+.++|+||++.+|+.|++||+.+... ..++ ++.++++..++.+.+. ........+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHH
Confidence 67889999999999998899999964211 1222 2334455555543321 2234456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999997668999999999998865 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 53
No 173
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-46 Score=358.92 Aligned_cols=210 Identities=28% Similarity=0.434 Sum_probs=176.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-HhcccE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLS 299 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i~ 299 (467)
++++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999964 35999999999999999999999999999999999999999999999999998776554 467899
Q ss_pred EEcCCCccccc-cHHHhcCcCC-CC--CH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG-MY--SD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~-~~--~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
|+||++.+|.. |+.+|+.+.. .. .. +...++++..+ ++.........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999876 9999996421 11 11 11223333322 12222334557899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
+|+++||||||++||+.++..+.+.|.+..+ ++|+|++||+++.+.. ||+++++++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999998643 7999999999999885 999999999999999999987
No 174
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-46 Score=374.53 Aligned_cols=215 Identities=26% Similarity=0.385 Sum_probs=182.0
Q ss_pred cEEEEeEEEEeCCC--------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH
Q 044927 220 RIELEDLKVRYRPN--------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL 291 (467)
Q Consensus 220 ~i~~~~vs~~y~~~--------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~ 291 (467)
.|+++|+++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2358999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcccEEEcCCCc--ccc-ccHHHhcCc----CCCCC----HHHHHHHHHHcChHH-HHHhCCCcccccccCCCC
Q 044927 292 K---DLRTKLSIIPQEPT--LFR-GSVRTNLDP----LGMYS----DNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGE 356 (467)
Q Consensus 292 ~---~~r~~i~~v~Q~~~--lf~-~tv~enl~~----~~~~~----~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~ 356 (467)
+ .+|++|+||||+|. +++ .|+.+|+.. ..... .+++.++++.+++.+ ..++ ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR-----------YPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC-----------CCc
Confidence 3 46788999999984 554 488888741 11112 234566677777742 3333 337
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .+.|+|+|||+++.+.. ||||++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999998864 38999999999999975 999999999999
Q ss_pred EEecChhhHhcc
Q 044927 434 VEYDLPSKLMET 445 (467)
Q Consensus 434 v~~g~~~~l~~~ 445 (467)
++.|+++++++.
T Consensus 234 ve~g~~~~~~~~ 245 (327)
T PRK11308 234 VEKGTKEQIFNN 245 (327)
T ss_pred EEECCHHHHhcC
Confidence 999999999864
No 175
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=369.29 Aligned_cols=213 Identities=26% Similarity=0.419 Sum_probs=181.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhccc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL 298 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~i 298 (467)
++++||+++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999633 359999999999999999999999999999999999999999999999999852 2344678899
Q ss_pred EEEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+|+||++ .+|..|+.||+.+.. .... +++.++++.+++.++.++. ..+|||||+||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999997 467889999996421 1222 3345566666665444333 368999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||++.+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 4899999999999987 4999999999999999999998753
No 176
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-46 Score=363.15 Aligned_cols=203 Identities=26% Similarity=0.340 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999964 35999999999999999999999999999999999999999999999998753 4577899
Q ss_pred EEcCCCcccc-ccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
|++|++.+|+ .|++||+.+.. ...++++.++++..++.+..++. ..+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 59999997431 11244566777777776554443 47899999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927 378 ILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 440 (467)
+|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|+++++|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998853 37999999999998765 9999999999999988765
No 177
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=365.11 Aligned_cols=216 Identities=24% Similarity=0.400 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCC--HH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG--LK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~--~~ 292 (467)
.++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999963 3599999999999999999999999999999999999985 7999999999886432 34
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
.+|+.++|+||++.+|+.|++||+.+.. ..+.+ ++.++++.+++.+.+ ..........||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 5678899999999998899999996421 12222 244455555553211 122334557899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999998865 99999999999999999999875
No 178
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.9e-47 Score=357.26 Aligned_cols=197 Identities=29% Similarity=0.426 Sum_probs=167.8
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v 301 (467)
+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999964 35899999999999999999999999999999999999999999999998763 467789999
Q ss_pred cCCCcc---ccccHHHhcCcCCC--------C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 302 PQEPTL---FRGSVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 302 ~Q~~~l---f~~tv~enl~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
||++.+ |+.|++||+.+... . ..+++.++++..++.++.++. ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence 999876 55799999864211 0 123456677777776655543 3689999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
|||||+.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999864 57999999999999875 9999999886 66654
No 179
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2e-46 Score=364.61 Aligned_cols=215 Identities=26% Similarity=0.399 Sum_probs=182.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC---------
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM--------- 289 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~--------- 289 (467)
+.++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 46999999999964 3599999999999999999999999999999999999999999999999988542
Q ss_pred ----CHHHHhcccEEEcCCCccccc-cHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCC
Q 044927 290 ----GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 356 (467)
Q Consensus 290 ----~~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~ 356 (467)
....+++.++|+||++.+|+. |++||+.+.. .... +++.++++..++.+... .....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCcc
Confidence 134567889999999999875 9999996321 1121 23445556655544321 23457
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELV 434 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv 434 (467)
.||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999864 48999999999999886 9999999999999
Q ss_pred EecChhhHhcc
Q 044927 435 EYDLPSKLMET 445 (467)
Q Consensus 435 ~~g~~~~l~~~ 445 (467)
+.|+++++.+.
T Consensus 232 ~~~~~~~~~~~ 242 (257)
T PRK10619 232 EEGAPEQLFGN 242 (257)
T ss_pred EeCCHHHhhhC
Confidence 99999998753
No 180
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-48 Score=345.74 Aligned_cols=214 Identities=26% Similarity=0.429 Sum_probs=182.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i 298 (467)
.+..+|+.++|+. +++++++||++++||++|+.|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..|
T Consensus 4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 5889999999953 459999999999999999999999999999999999999999999999999999997653 5679
Q ss_pred EEEcCCCccccc-cHHHhcCcCCCCCH---------HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGMYSD---------NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~~~~---------~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
||+||+|.+|.+ ||+|||...-...+ +++.+.++..++.+. -...+.+||||||+|+.|
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-----------r~~~a~sLSGGERRR~EI 150 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-----------RDSKAYSLSGGERRRVEI 150 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-----------hcCcccccccchHHHHHH
Confidence 999999999987 99999953211111 122334444444433 334578999999999999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChh-HHhhcCEEEEEeCCEEEEecChhhHhccC
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVP-TITDSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
||||+.+|+.++||||++|+||.+...|++.++.+. +|--|++.-|+.. ++..|||.+++.+|+|.++|+|+|+.+.+
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999999999999998865 4889999999986 56679999999999999999999998653
No 181
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.9e-46 Score=354.64 Aligned_cols=210 Identities=20% Similarity=0.353 Sum_probs=185.0
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhcc
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTK 297 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~ 297 (467)
.+.|+.|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999755 459999999999999999999999999999999999999999999999998865542 235678
Q ss_pred cEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 298 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 298 i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
++|++|++.+|+.|++||+.+.....+++..++++.+++.+.+..+|.|+++.++.....||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999997543344556677888889988889999999999998899999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHH--HHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 378 ILVLDEATASIDSATDAILQR--IIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
++||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999988887 455443 3789999999999988899999999884
No 182
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-46 Score=361.60 Aligned_cols=217 Identities=25% Similarity=0.426 Sum_probs=182.5
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~ 291 (467)
+.++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 35899999999964 3599999999999999999999999999999999999863 69999999999864 345
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCC---CC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
..+|+.++|+||++.+|+.|+++|+.+.. .. + ++++.++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 56788999999999998899999996421 11 1 223444555555433221 223445678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
||++|||||+.+|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999998765 999999999999999999998
Q ss_pred hc
Q 044927 443 ME 444 (467)
Q Consensus 443 ~~ 444 (467)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 75
No 183
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-46 Score=353.24 Aligned_cols=200 Identities=28% Similarity=0.425 Sum_probs=173.4
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999632 2 39999999999999999999999999999999999999999999999876654 3578999
Q ss_pred EcCCCccccc-cHHHhcCcCCC-------CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
++|++.+|.+ |++||+.+... ..++++.++++.+++.+..++.| .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 99999964211 12345677788888877666655 57999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
+.+|+++||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999864 37999999999999875 9999999999998764
No 184
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=362.58 Aligned_cols=217 Identities=24% Similarity=0.409 Sum_probs=181.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CC---CccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EP---ENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p---~~G~i~i~g~~i~~~--~~~ 292 (467)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999963 35999999999999999999999999999999999995 46 499999999998643 345
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcC----CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+|+.++|+||++.+|+.|++||+.+. +... ++++.++++.+++.+.+. +..+....+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHHH
Confidence 678889999999999999999999632 1111 123344555555533221 2234556789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999998765 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 236 ~~ 237 (252)
T PRK14239 236 MN 237 (252)
T ss_pred hC
Confidence 54
No 185
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=363.53 Aligned_cols=217 Identities=25% Similarity=0.418 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC---CCC--CccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL---VEP--ENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl---~~p--~~G~i~i~g~~i~~~--~~~ 292 (467)
.++++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 3589999999999999999999999999999999997 455 589999999998754 245
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCC---CC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+|+.++|+||++.+|..|+.||+.+.. .. . ++++.++++.+++.+.+. +.....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHHH
Confidence 6788899999999999889999996421 11 1 123445555555533221 2234556789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998678999999999998864 9999999999999999999997
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 234 ~~ 235 (250)
T PRK14245 234 TN 235 (250)
T ss_pred cC
Confidence 53
No 186
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-46 Score=364.57 Aligned_cols=218 Identities=24% Similarity=0.425 Sum_probs=185.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~ 291 (467)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 459999999999999999999999999999999999997 589999999999864 334
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
..+|+.++|+||++.+|..|++||+.+.. .... +++.++++..++.+.+ +...+....+||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHH
Confidence 56788999999999999899999996421 1111 2344556666654332 2234456689999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 442 (467)
||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998866899999999999876 4999999999999999999998
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
.+.
T Consensus 250 ~~~ 252 (267)
T PRK14237 250 FTN 252 (267)
T ss_pred hcC
Confidence 753
No 187
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-46 Score=364.41 Aligned_cols=217 Identities=25% Similarity=0.460 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~ 292 (467)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 359999999999999999999999999999999999864 7899999999998643 344
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcC----CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.++++++|+||++.+|+.|++||+.+. .... ++.+.++++..++.+.+ ....+....+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHH
Confidence 678889999999999988999999642 1111 12244455555542111 12234456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998764 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 252 ~~ 253 (268)
T PRK14248 252 TS 253 (268)
T ss_pred hC
Confidence 53
No 188
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=382.96 Aligned_cols=199 Identities=27% Similarity=0.411 Sum_probs=174.1
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcccEEEcCCCccccc-
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG- 310 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~- 310 (467)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+ +++++|+||++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 4579999999999864
Q ss_pred cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeC
Q 044927 311 SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383 (467)
Q Consensus 311 tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDE 383 (467)
|++||+.+.. ..+ .+++.++++.+++.++.++.| .+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999996421 122 234556777777776666655 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 384 ATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 384 pts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||++||+.+++.+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998863 47999999999998765 999999999999999999998764
No 189
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.8e-46 Score=356.03 Aligned_cols=207 Identities=25% Similarity=0.434 Sum_probs=170.4
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHh
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLR 295 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r 295 (467)
++++||+++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996431 258999999999999999999999999999999999999999999999999987663 4678
Q ss_pred cccEEEcCCC--ccc-cccHHHhcCcC----CC-CCHHHH----HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 296 TKLSIIPQEP--TLF-RGSVRTNLDPL----GM-YSDNEI----WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 296 ~~i~~v~Q~~--~lf-~~tv~enl~~~----~~-~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
+.++|++|++ .++ ..|+++|+.+. .. ..++.. .+.++..++. +........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 8999999998 344 46999998531 11 111111 1233333331 1233445578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEec
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYD 437 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g 437 (467)
||++|||||+.+|++|||||||++||+.+++.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998643 799999999999988 59999999999998764
No 190
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.2e-46 Score=355.33 Aligned_cols=203 Identities=26% Similarity=0.391 Sum_probs=173.0
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~ 297 (467)
++++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999433 35999999999999999999999999999999999999999999999999987765443 6788
Q ss_pred cEEEcCCCccc-cccHHHhcCcC---CCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLF-RGSVRTNLDPL---GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf-~~tv~enl~~~---~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
++|+||++.+| ..|++||+.+. ...+.+ ++.++++..++.+..++. ..+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999875 56999999642 112222 344566666666555443 378999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~ 435 (467)
||++.+|++|||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999863 47899999999999876 89999999999864
No 191
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-46 Score=373.43 Aligned_cols=218 Identities=19% Similarity=0.307 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCccEEEEcCEeCCCCCHHH
Q 044927 220 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~----p~~G~i~i~g~~i~~~~~~~ 293 (467)
.++++||++.|+... ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 389999999996532 358999999999999999999999999999999999998 48999999999998887665
Q ss_pred Hh----cccEEEcCCCc--ccc-ccHHHhcC----cCCCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927 294 LR----TKLSIIPQEPT--LFR-GSVRTNLD----PLGMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358 (467)
Q Consensus 294 ~r----~~i~~v~Q~~~--lf~-~tv~enl~----~~~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L 358 (467)
++ +.|+||||+|. +++ .|+.+++. ...... .+++.++++.+++.+.. ...+....+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 44 36999999985 443 36665542 211112 23456677777764321 1123345789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEE
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVE 435 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~ 435 (467)
|||||||++|||||+.+|++||+||||++||+.++..+++.|+++. .+.|+|+|||+++.+. .||||++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 3799999999999986 599999999999999
Q ss_pred ecChhhHhcc
Q 044927 436 YDLPSKLMET 445 (467)
Q Consensus 436 ~g~~~~l~~~ 445 (467)
.|+++++++.
T Consensus 235 ~g~~~~~~~~ 244 (326)
T PRK11022 235 TGKAHDIFRA 244 (326)
T ss_pred ECCHHHHhhC
Confidence 9999999863
No 192
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-46 Score=362.60 Aligned_cols=212 Identities=23% Similarity=0.353 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i 298 (467)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999963 359999999999999999999999999999999999999999999999999987765554 4569
Q ss_pred EEEcCCCccccc-cHHHhcCcCCC-----------C-----CH------HHHHHHHHHcChHHHHHhCCCcccccccCCC
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGM-----------Y-----SD------NEIWEAMEKCQLKATISRLPMLLDSSVSDEG 355 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~-----------~-----~~------~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g 355 (467)
+|+||++.+|.. |++||+.+... . .. +.+.+.++..+ ++.......
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG-----------LLEHANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC-----------hhhhhhCCh
Confidence 999999999875 99999964210 0 00 11222333333 444445566
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
.+||||||||++||||++.+|++|||||||++||+.++..+.+.|.+.. + ++|+|++||+++.+.. ||++++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 8899999999999999999999999999999999999999999998863 3 7899999999999865 99999999999
Q ss_pred EEEecChhhHhc
Q 044927 433 LVEYDLPSKLME 444 (467)
Q Consensus 433 iv~~g~~~~l~~ 444 (467)
+++.|+++++..
T Consensus 232 i~~~~~~~~~~~ 243 (255)
T PRK11300 232 PLANGTPEEIRN 243 (255)
T ss_pred EEecCCHHHHhh
Confidence 999999998864
No 193
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-46 Score=354.92 Aligned_cols=208 Identities=24% Similarity=0.374 Sum_probs=181.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++||+++|++ . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999876543 2567999
Q ss_pred EcCCCccccc-cHHHhcCcCC--C--C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG--M--Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~--~--~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|.+ |+.||+.+.. . . .++++.++++..++.+.+++.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 9999996421 1 1 1345677888888887777666 57999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+++|+++||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998863 37899999999999865 999999999999999999998754
No 194
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.1e-46 Score=363.08 Aligned_cols=211 Identities=23% Similarity=0.367 Sum_probs=182.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999988887777888999
Q ss_pred EcCCCcc-ccccHHHhcCcCCC--------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 301 IPQEPTL-FRGSVRTNLDPLGM--------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 301 v~Q~~~l-f~~tv~enl~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
+||++.+ +..|++||+.+... .. .+++.++++.+++.+..++ ....||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 9999865 45799999964210 01 1234556666666544333 347899999999999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||++.+|+++||||||++||+.+...+.+.|++.. ++.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999999864 4789999999999986 599999999999999999998864
No 195
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.3e-46 Score=342.79 Aligned_cols=172 Identities=35% Similarity=0.610 Sum_probs=161.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997543458999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
++|++.+|+.|++||+ ||||||||++||||++++|+++|
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999998 89999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927 381 LDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGEL 433 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i 433 (467)
|||||++||+.++..+.+.+++.. +++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998864 48899999999999888999999999974
No 196
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-46 Score=361.89 Aligned_cols=217 Identities=25% Similarity=0.400 Sum_probs=181.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~ 292 (467)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 359999999999999999999999999999999999997 479999999998854 3345
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCC---CC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+|+.++|++|++.+|+.|++||+.+.. .. .. +++.++++..++.... .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence 6788899999999999899999996421 11 11 2334455555542110 11223456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999998765 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 235 ~~ 236 (251)
T PRK14251 235 IA 236 (251)
T ss_pred hC
Confidence 53
No 197
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.1e-46 Score=364.28 Aligned_cols=224 Identities=26% Similarity=0.396 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCC-------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 044927 220 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~-------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~ 292 (467)
.|+++||+++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 23599999999999999999999999999999999999999999999999998755555
Q ss_pred HHhcccEEEcCCCc--cccc-cHHHhcCcC----CCCC----HHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCCh
Q 044927 293 DLRTKLSIIPQEPT--LFRG-SVRTNLDPL----GMYS----DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSV 360 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~--lf~~-tv~enl~~~----~~~~----~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSg 360 (467)
..++.++|+||++. +++. |+.+|+.+. .... .+++.++++.+++. +..... ..+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-----------PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-----------chhcCH
Confidence 55678999999985 4443 888887421 1111 23456677777773 333332 367999
Q ss_pred hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999864 37899999999999886 9999999999999999
Q ss_pred ChhhHhccC--chHHHHHH
Q 044927 438 LPSKLMETN--SAFSKLVA 454 (467)
Q Consensus 438 ~~~~l~~~~--~~~~~l~~ 454 (467)
+++++.... ..+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 999987642 34455554
No 198
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.5e-46 Score=373.58 Aligned_cols=202 Identities=25% Similarity=0.411 Sum_probs=173.5
Q ss_pred EeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927 229 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 308 (467)
Q Consensus 229 ~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 308 (467)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5643 359999999999999999999999999999999999999999999999999865 3456788999999999988
Q ss_pred cc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 309 RG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 309 ~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
.. |++||+.+.. ..+ ++++.++++.+++.+..++ ...+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 75 9999996421 112 2235556666666544333 347899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 381 LDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||++||+.+++.+++.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999864 47999999999999875 99999999999999999999865
No 199
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-46 Score=360.43 Aligned_cols=217 Identities=25% Similarity=0.419 Sum_probs=183.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~ 292 (467)
.++++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999963 35999999999999999999999999999999999999997 69999999988643 345
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCCC---C-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+|+.++|+||++.+|+.|++||+.+... . .. +.+.++++..++.+.+ .......+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHH
Confidence 67889999999999998899999964311 1 11 2233344444543322 22345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987668999999999999876 8999999999999999999986
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 235 ~~ 236 (251)
T PRK14249 235 SR 236 (251)
T ss_pred hC
Confidence 53
No 200
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.4e-46 Score=356.95 Aligned_cols=209 Identities=23% Similarity=0.332 Sum_probs=178.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEcCCCccccccHHHhcCcC----CCC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 300 IIPQEPTLFRGSVRTNLDPL----GMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~----~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
|+||++.+|+.|++||+.+. ... ..+++.+.++..++.+ +.......+|||||+||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999988999999642 111 1223344555555421 22344567899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEe-CCEEEEecChh
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLS-YGELVEYDLPS 440 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~-~G~iv~~g~~~ 440 (467)
+|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999863 3789999999999998899999995 66677888875
No 201
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-46 Score=359.73 Aligned_cols=218 Identities=23% Similarity=0.433 Sum_probs=183.0
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCCC--CH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~--p---~~G~i~i~g~~i~~~--~~ 291 (467)
+.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 46999999999963 359999999999999999999999999999999999986 4 689999999998643 34
Q ss_pred HHHhcccEEEcCCCcccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 292 KDLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
..+|+.++|+||++.+|. .|++||+.+. ...+. +++.++++.+++.+.+.. ..+....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHHH
Confidence 567889999999999887 5999999642 11121 234455566665433221 2234567899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~ 441 (467)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999866789999999999986 499999999999999999999
Q ss_pred Hhcc
Q 044927 442 LMET 445 (467)
Q Consensus 442 l~~~ 445 (467)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14256 234 IFTT 237 (252)
T ss_pred HHhC
Confidence 8753
No 202
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-46 Score=354.08 Aligned_cols=200 Identities=27% Similarity=0.447 Sum_probs=169.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999963 359999999999999999999999999999999999999999999999987753 45778999
Q ss_pred EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|.. |++||+.+.. ... .+++.++++..++.+... ....+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999986421 111 223445555555554433 34478999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 47899999999998865 9999999999998764
No 203
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.1e-46 Score=354.22 Aligned_cols=200 Identities=29% Similarity=0.456 Sum_probs=170.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhccc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL 298 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~i 298 (467)
++++||+++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 359999999999999999999999999999999999999999999999998853 3445678899
Q ss_pred EEEcCCCcccc-ccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~~lf~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+|+||++.+|. .|++||+.+.. .... +++.++++..++.+.+++. ..+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence 99999999886 59999996421 1222 2344555666665544443 378999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
||++++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999875 999999999974
No 204
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=362.57 Aligned_cols=216 Identities=23% Similarity=0.410 Sum_probs=181.5
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCCC--HHH
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSMG--LKD 293 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~ 293 (467)
-+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 358999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhcccEEEcCCCccccccHHHhcCcCC---CC--C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 294 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~--~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
+|+.++|+||++.+|+.|+.||+.+.. .. . ++++.++++..++.+.+. +.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 688999999999999889999996421 11 1 123445566666543211 2234456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987668999999999999875 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 237 ~~ 238 (251)
T PRK14244 237 KN 238 (251)
T ss_pred cC
Confidence 54
No 205
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-46 Score=363.11 Aligned_cols=218 Identities=23% Similarity=0.370 Sum_probs=184.7
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~ 291 (467)
+.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46999999999964 3599999999999999999999999999999999999984 89999999999864 344
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCC---CC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
..+|+.++|+||++.+|+.|++||+.+.. .. . ++++.++++.+++.+.+. +..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHH
Confidence 56788999999999999889999996421 11 1 123455556655543322 233456689999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
||++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999998765 999999999999999999998
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
.+.
T Consensus 255 ~~~ 257 (272)
T PRK14236 255 FTS 257 (272)
T ss_pred hcC
Confidence 753
No 206
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=360.69 Aligned_cols=217 Identities=23% Similarity=0.432 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~ 292 (467)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5899999999964 358999999999999999999999999999999999986 479999999998853 3456
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCCC---CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
.++++++|++|++.+|+.|+.||+.+... .. ++++.++++.+++.+.+.. .......+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence 67889999999999988899999964211 11 2234445666666543322 23445678999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe---------CCEEEEe
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS---------YGELVEY 436 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~---------~G~iv~~ 436 (467)
+|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987667899999999998765 99999998 8999999
Q ss_pred cChhhHhcc
Q 044927 437 DLPSKLMET 445 (467)
Q Consensus 437 g~~~~l~~~ 445 (467)
|+++++.+.
T Consensus 241 ~~~~~~~~~ 249 (264)
T PRK14243 241 DRTEKIFNS 249 (264)
T ss_pred CCHHHHHhC
Confidence 999999753
No 207
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-46 Score=358.40 Aligned_cols=216 Identities=24% Similarity=0.383 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCC-CCCHHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC-SMGLKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~-~~~~~~ 293 (467)
.++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999963 3599999999999999999999999999999999999986 5999999999885 345567
Q ss_pred HhcccEEEcCCCccccccHHHhcCcCC---CC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 294 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
+|+.++|+||++.+|+.|+.||+.+.. .. .+ +++.++++..++.+.+ .........+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 788999999999999899999996421 11 11 2233445555554322 123344567899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998667999999999999876 99999999999999999998864
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=361.71 Aligned_cols=218 Identities=24% Similarity=0.392 Sum_probs=182.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~ 291 (467)
..++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 36999999999964 348999999999999999999999999999999999997 699999999998853 345
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCC---CCCHH-----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDN-----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~~~~-----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
..+++.++|+||++.+|..|++||+.+.. ...++ .+.++++..++.+ ++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 56788999999999999889999996421 11111 1223333333211 222334456688999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999999865 999999999999999999998
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 754
No 209
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=357.76 Aligned_cols=217 Identities=22% Similarity=0.392 Sum_probs=183.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~ 292 (467)
.++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999963 3599999999999999999999999999999999999875 799999999998643 334
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCC---CC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+++.++|+||++.+|+.|++||+.+.. .. .. +++.++++.+++.+.+. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHH
Confidence 6688899999999999999999996421 11 11 23445666666533221 1233456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++||||++++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667999999999998775 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 235 ~~ 236 (251)
T PRK14270 235 LE 236 (251)
T ss_pred cC
Confidence 53
No 210
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-46 Score=359.59 Aligned_cols=217 Identities=26% Similarity=0.435 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~ 292 (467)
.|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999988653 234
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+++.++|+||++.+|..|++||+.+.. ...+ +++.++++..++.+.+. ...+....+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHH
Confidence 5678899999999999899999996421 1111 22444555555543221 2234556889999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999876 49999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 234 ~~ 235 (250)
T PRK14262 234 ER 235 (250)
T ss_pred hC
Confidence 53
No 211
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.9e-46 Score=358.22 Aligned_cols=211 Identities=21% Similarity=0.257 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHH-hcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDL-RTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~-r~~ 297 (467)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999963 35999999999999999999999999999999999994 7999999999999987776554 445
Q ss_pred cEEEcCCCccccc-cHHHhcCcCC----C------CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCC-CCChh
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPLG----M------YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE-NWSVG 361 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~~----~------~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~-~LSgG 361 (467)
++|+||++.+|++ |+++|+.+.. . .+ .+++.++++..++.+. ....... .||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hcccccccCcCHH
Confidence 9999999998876 8999985311 0 01 1223344444444321 1112223 59999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEecC
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g~ 438 (467)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999864 47999999999999875 79999999999999999
Q ss_pred hhhHh
Q 044927 439 PSKLM 443 (467)
Q Consensus 439 ~~~l~ 443 (467)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 88654
No 212
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=359.86 Aligned_cols=210 Identities=21% Similarity=0.315 Sum_probs=178.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCC-----CH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSM-----GL 291 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~-----~~ 291 (467)
.++++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 35999999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHHhcccEEEcCCCcccc-ccHHHhcCcCCC------------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCC
Q 044927 292 KDLRTKLSIIPQEPTLFR-GSVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEG 355 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~-~tv~enl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g 355 (467)
..+++.++|+||++.+|. .|+.+|+.+... .. .+++.++++..++.+..++ ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 456788999999999887 499999964210 01 1234556666666554444 34
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCE
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGE 432 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~ 432 (467)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+. .||++++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999999999999864 3799999999999865 599999999999
Q ss_pred EEEecChhhH
Q 044927 433 LVEYDLPSKL 442 (467)
Q Consensus 433 iv~~g~~~~l 442 (467)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999986
No 213
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-45 Score=370.70 Aligned_cols=218 Identities=23% Similarity=0.386 Sum_probs=180.0
Q ss_pred cEEEEeEEEEeCC--CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHH
Q 044927 220 RIELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDL 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~--~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~ 294 (467)
.++++|+++.|+. +...+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999953 2235899999999999999999999999999999999999996 9999999999998877665
Q ss_pred h----cccEEEcCCC--cccc-ccHHHhcC----cCCCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCC
Q 044927 295 R----TKLSIIPQEP--TLFR-GSVRTNLD----PLGMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359 (467)
Q Consensus 295 r----~~i~~v~Q~~--~lf~-~tv~enl~----~~~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS 359 (467)
+ +.|+||||+| .+++ .|+.+|+. .....+.+ ++.+.++.+++ +++. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999998 4554 47877763 11122222 23344555444 2211 22445668999
Q ss_pred hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEe
Q 044927 360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436 (467)
Q Consensus 360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~ 436 (467)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988643 7899999999999875 999999999999999
Q ss_pred cChhhHhcc
Q 044927 437 DLPSKLMET 445 (467)
Q Consensus 437 g~~~~l~~~ 445 (467)
|+++++.+.
T Consensus 244 g~~~~i~~~ 252 (330)
T PRK09473 244 GNARDVFYQ 252 (330)
T ss_pred CCHHHHHhC
Confidence 999999863
No 214
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.1e-45 Score=355.07 Aligned_cols=209 Identities=26% Similarity=0.396 Sum_probs=179.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 478999999964 359999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|++ |+.||+.+.. ..+ .+++.++++..++.+..++. ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999975 9999996421 111 23345556666665544443 368999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+++|+++||||||++||+.+++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999999998643 7999999999998765 99999999999999999999875
No 215
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=363.04 Aligned_cols=219 Identities=25% Similarity=0.428 Sum_probs=183.4
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CC
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MG 290 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~ 290 (467)
...++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 346999999999964 359999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcccEEEcCCCccccccHHHhcCcCC---CCC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 291 ~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
...++++++|+||++.+|+.|+.||+.+.. ... ++++.++++..++...+. ...+....+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 556788999999999999889999996421 111 234555666666533221 1233456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEE-EEeCCEEEEecChhhH
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFM-VLSYGELVEYDLPSKL 442 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~-vl~~G~iv~~g~~~~l 442 (467)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997666899999999999875 99975 6799999999999998
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 753
No 216
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-46 Score=358.99 Aligned_cols=217 Identities=24% Similarity=0.392 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~ 292 (467)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999963 3599999999999999999999999999999999999763 489999999998765 345
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCCC----CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
..++.++|+||++.+|+.|++||+.+... .. ++.+.++++.+++.+. +.+..+..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHHH
Confidence 67888999999999998899999974311 11 1223444454444322 223345667899999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999864 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 237 ~~ 238 (253)
T PRK14261 237 EN 238 (253)
T ss_pred hC
Confidence 53
No 217
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-46 Score=356.03 Aligned_cols=210 Identities=28% Similarity=0.403 Sum_probs=182.2
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999964 359999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
++|++.+|.+ |+++|+.+.. ..+ ++++.++++..++.+++.+.| ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999865 9999986321 111 234556677777776666554 68999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+++|+++||||||++||+.+++.+.+.+++..+ ++|+|++||+++.+.. |||+++|++|++++.|+++++.+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999988643 7999999999999865 999999999999999999988753
No 218
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-47 Score=350.17 Aligned_cols=214 Identities=25% Similarity=0.419 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i 298 (467)
-+++++++++|++- .+++|+||++++||++||+|||||||||++|+|+|+|+|++|+|.++|+++..++++.. |..|
T Consensus 4 lL~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 37899999999643 49999999999999999999999999999999999999999999999999999998765 5669
Q ss_pred EEEcCCCccccc-cHHHhcCcCCC-------------C--CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGM-------------Y--SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~-------------~--~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L 358 (467)
+--||.+.+|++ ||.||+..... + .+ ++..+.++.++ ++...++...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vg-----------L~~~a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVG-----------LGELADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcC-----------CchhhcchhhcC
Confidence 999999999976 99999843210 0 11 12223344444 444455566889
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVE 435 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~ 435 (467)
|+||++|+.|||||+.+|++|+||||.+||.+.....+.+.|++..+ |.|+++|.||++.+.. ||||+||+.|++++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999999764 5999999999999876 99999999999999
Q ss_pred ecChhhHhccC
Q 044927 436 YDLPSKLMETN 446 (467)
Q Consensus 436 ~g~~~~l~~~~ 446 (467)
+|+|+|+.+..
T Consensus 231 eG~P~eV~~dp 241 (250)
T COG0411 231 EGTPEEVRNNP 241 (250)
T ss_pred cCCHHHHhcCH
Confidence 99999998653
No 219
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=371.20 Aligned_cols=221 Identities=22% Similarity=0.392 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCC--CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCccEEEEcCEeCCCCCHHH
Q 044927 220 RIELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~--~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~----p~~G~i~i~g~~i~~~~~~~ 293 (467)
.|+++|++++|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22358999999999999999999999999999999999996 58999999999998887665
Q ss_pred Hh----cccEEEcCCCc--ccc-ccHHHhcCcC-------CC-C-C----HHHHHHHHHHcChHH---HHHhCCCccccc
Q 044927 294 LR----TKLSIIPQEPT--LFR-GSVRTNLDPL-------GM-Y-S----DNEIWEAMEKCQLKA---TISRLPMLLDSS 350 (467)
Q Consensus 294 ~r----~~i~~v~Q~~~--lf~-~tv~enl~~~-------~~-~-~----~~~~~~~~~~~~l~~---~i~~l~~g~~t~ 350 (467)
++ +.|+||||+|. +++ .|+.+|+... +. . . .+++.++++.+++.+ ..++.
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~------- 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF------- 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-------
Confidence 43 47999999986 333 4888887420 00 0 1 234566777777753 23333
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEE
Q 044927 351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMV 427 (467)
Q Consensus 351 v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~v 427 (467)
..+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||++
T Consensus 156 ----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 156 ----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred ----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 378999999999999999999999999999999999999999999998643 7999999999999975 999999
Q ss_pred EeCCEEEEecChhhHhcc-CchHHH
Q 044927 428 LSYGELVEYDLPSKLMET-NSAFSK 451 (467)
Q Consensus 428 l~~G~iv~~g~~~~l~~~-~~~~~~ 451 (467)
|++|+|++.|+++++.+. ...|.+
T Consensus 232 m~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999999763 234543
No 220
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.7e-46 Score=375.30 Aligned_cols=207 Identities=21% Similarity=0.265 Sum_probs=175.2
Q ss_pred EEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE----eCCCCCHHHH---h-cc
Q 044927 226 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL----DICSMGLKDL---R-TK 297 (467)
Q Consensus 226 vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~----~i~~~~~~~~---r-~~ 297 (467)
+.++|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++
T Consensus 30 ~~~~~g--~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 30 ILDETG--LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHhhC--CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 344453 234899999999999999999999999999999999999999999999996 5666655443 3 57
Q ss_pred cEEEcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
++||||++.+|+ .|++||+.+.. ..+. +++.++++.+++.++.++.| .+||||||||++||
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LA 176 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLA 176 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999997 69999996421 1222 34566777777776655544 67999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|||+.+|++|||||||++||+.++..+++.|.++.+ ++|+|+|||+++.+. .||||++|++|++++.|++++++..
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999999999999988643 799999999999875 5999999999999999999999864
No 221
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.3e-45 Score=348.90 Aligned_cols=201 Identities=24% Similarity=0.413 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 468999999952 468999999999999999999999999999999999999999999999987543 35778999
Q ss_pred EcCCCccccc-cHHHhcCcC--CCC-----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFRG-SVRTNLDPL--GMY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~--~~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|.. |+.||+.+. ... .++++.++++..++.+..++.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 999998632 111 1345667788888877776665 57999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 438 (467)
+.+|+++||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999864 37899999999998765 99999999999998874
No 222
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-45 Score=359.96 Aligned_cols=211 Identities=23% Similarity=0.342 Sum_probs=180.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--------ccEEEEcCEeCCCCCHH
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--------NGRILIDGLDICSMGLK 292 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~--------~G~i~i~g~~i~~~~~~ 292 (467)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999877777
Q ss_pred HHhcccEEEcCCCc-cccccHHHhcCcCCC--------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCCh
Q 044927 293 DLRTKLSIIPQEPT-LFRGSVRTNLDPLGM--------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 360 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~-lf~~tv~enl~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSg 360 (467)
.+++.++|+||++. +|..|++||+.+... .. .+.++++++..++.+ .++....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 78888999999986 567899999964211 11 122344555555543 34445578999
Q ss_pred hHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHh-hcCEEEEE
Q 044927 361 GQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTIT-DSDMFMVL 428 (467)
Q Consensus 361 Gq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~-~~d~i~vl 428 (467)
|||||++|||||+ .+|++|||||||++||+.+.+.+.+.+++.. . ++|+|+|||+++.+. .||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 5999999999999999999999999999864 3 799999999999986 49999999
Q ss_pred eCCEEEEecChhhHhc
Q 044927 429 SYGELVEYDLPSKLME 444 (467)
Q Consensus 429 ~~G~iv~~g~~~~l~~ 444 (467)
++|++++.|+++++.+
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999998865
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=357.99 Aligned_cols=216 Identities=24% Similarity=0.421 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~~ 292 (467)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999998853 3455
Q ss_pred HHhcccEEEcCCCcccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 293 DLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
.+|+.++|++|++.+|. .|++||+.+. ...+. +.+.++++..++.+.+ .........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 67889999999999887 4999999632 11111 2334455566553222 1223345578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEe------CCEEEEe
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLS------YGELVEY 436 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~------~G~iv~~ 436 (467)
||++|||||+.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+. .|||+++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999998766789999999999876 599999997 8999999
Q ss_pred cChhhHhc
Q 044927 437 DLPSKLME 444 (467)
Q Consensus 437 g~~~~l~~ 444 (467)
|+++++..
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 99999875
No 224
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=373.27 Aligned_cols=210 Identities=24% Similarity=0.365 Sum_probs=181.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHHHhc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRT 296 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~~~r~ 296 (467)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....++
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 99999963 2 23 89999999999999999999999999999999999999999999988653 2344678
Q ss_pred ccEEEcCCCcccc-ccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 297 KLSIIPQEPTLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 297 ~i~~v~Q~~~lf~-~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+++|+||++.+|+ .|++||+.+.. ....+++.++++..++.+..++.| .+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 8999999999986 59999997532 223456777788887766665554 6899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
+|++|||||||++||+.+++.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|+++++....
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999988643 7899999999998765 9999999999999999999998643
No 225
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=360.15 Aligned_cols=217 Identities=27% Similarity=0.392 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCC-HHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG-LKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~-~~~ 293 (467)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 3599999999999999999999999999999999999986 6999999999987653 346
Q ss_pred HhcccEEEcCCCccccccHHHhcCcCC----CCCHHHH----HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 294 LRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSDNEI----WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
++++++|+||++.+|+.|+++|+.+.. ..+.++. .+.++.+++.+. +.+.+.....+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHHH
Confidence 788999999999999899999996421 1233332 233444444322 1223445668899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999998775 99999999999999999999976
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 252 ~ 252 (276)
T PRK14271 252 S 252 (276)
T ss_pred C
Confidence 4
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-45 Score=359.21 Aligned_cols=218 Identities=22% Similarity=0.398 Sum_probs=183.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~ 291 (467)
..|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ...
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999964 3599999999999999999999999999999999999863 58999999998864 234
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCCC---C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
..+|+.++|+||++.+|+.|+.+|+.+... . .++.+.++++.+++.+.+. .........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence 467889999999999998899999964211 1 1223445566666543332 12334567899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe---------CCEEEE
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS---------YGELVE 435 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~---------~G~iv~ 435 (467)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988667999999999998865 99999998 899999
Q ss_pred ecChhhHhcc
Q 044927 436 YDLPSKLMET 445 (467)
Q Consensus 436 ~g~~~~l~~~ 445 (467)
.|+++++...
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999998753
No 227
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-46 Score=351.97 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=190.1
Q ss_pred cEEEEeEEEEeCCCC----------------------CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 044927 220 RIELEDLKVRYRPNT----------------------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~----------------------~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G 277 (467)
.|+++||++-|+.+. ...++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588999998886421 1258999999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCCHHHH----hcccEEEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCC
Q 044927 278 RILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPM 345 (467)
Q Consensus 278 ~i~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~ 345 (467)
+|+++|.|+..++.+++ |+++++|||+.-|++- ||.||..|+-+ .+ .+...++++.+||..|-++.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 99999999999987765 3579999999998865 99999986522 22 344667899999999999988
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hc
Q 044927 346 LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DS 422 (467)
Q Consensus 346 g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~ 422 (467)
.+|||||||||.|||||..+|+||++|||+|+|||--+..+++.|.++. -+||+++|||+++++. ..
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 6799999999999999999999999999999999999999999887753 3799999999999865 49
Q ss_pred CEEEEEeCCEEEEecChhhHhccC
Q 044927 423 DMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 423 d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|||.+|++|+|++.|+|+|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999998743
No 228
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=357.80 Aligned_cols=218 Identities=22% Similarity=0.394 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~ 291 (467)
+.++++||+++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999963 3589999999999999999999999999999999999985 48999999998854 344
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
..+++.++|+||++.+|+.|++||+.+.. ...+ +.+.++++.+++.+.+.. .....+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 56788999999999999999999996421 1121 234456666666433321 23345678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe-----CCEEEEec
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS-----YGELVEYD 437 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~-----~G~iv~~g 437 (467)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987667999999999999875 99999998 59999999
Q ss_pred ChhhHhcc
Q 044927 438 LPSKLMET 445 (467)
Q Consensus 438 ~~~~l~~~ 445 (467)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998753
No 229
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=361.77 Aligned_cols=218 Identities=24% Similarity=0.360 Sum_probs=181.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~--~~ 291 (467)
..++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999964 349999999999999999999999999999999999864 4999999999988643 23
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCC---CC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
..+|+.++|+||++.+|+.|+.||+.+.. .. +. +++.++++..++.+.+ ..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 45688999999999999889999996421 11 11 2234455555543211 1123345678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999865 999999999999999999998
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
.+.
T Consensus 269 ~~~ 271 (286)
T PRK14275 269 FTN 271 (286)
T ss_pred HhC
Confidence 753
No 230
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=358.34 Aligned_cols=218 Identities=23% Similarity=0.361 Sum_probs=183.9
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC----
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS---- 288 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~---- 288 (467)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 456999999999964 3599999999999999999999999999999999999975 79999999987642
Q ss_pred CCHHHHhcccEEEcCCCccccccHHHhcCcCC---CC-----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCCh
Q 044927 289 MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 360 (467)
Q Consensus 289 ~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSg 360 (467)
.....+++.++|+||++.+|.+|++||+.+.. .. .++++.++++.+++.+. +.+..+.....|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCCH
Confidence 23456788999999999999889999996421 11 12344555665555322 22334455688999
Q ss_pred hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
||+||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. |||+++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999864 999999999999999999
Q ss_pred hhHhc
Q 044927 440 SKLME 444 (467)
Q Consensus 440 ~~l~~ 444 (467)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 99874
No 231
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-45 Score=356.86 Aligned_cols=217 Identities=20% Similarity=0.317 Sum_probs=185.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~ 292 (467)
.+.+++++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4899999999963 3599999999999999999999999999999999999987 799999999998643 334
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCCC---C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
.+++.++|+||++.+|..|+.||+.+... . ..+++.++++.+++.+.+.. ..++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 66788999999999998999999964311 1 12355667777776544332 23345678999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe--------CCEEEEec
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS--------YGELVEYD 437 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~--------~G~iv~~g 437 (467)
+|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998668899999999998765 99999996 89999999
Q ss_pred ChhhHhcc
Q 044927 438 LPSKLMET 445 (467)
Q Consensus 438 ~~~~l~~~ 445 (467)
+++++.+.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99998763
No 232
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-45 Score=355.01 Aligned_cols=217 Identities=23% Similarity=0.413 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~ 292 (467)
.++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 4789999999963 359999999999999999999999999999999999864 4899999999998653 355
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCC---C-CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.++++++|+||++.+|+.|+.||+.+.. . .+. +++.++++.+++.+.+.. ..+..+..|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 6788999999999999999999996421 1 122 234556777776554432 123456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987678999999999998876 8999999999999999999986
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 53
No 233
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.1e-45 Score=346.79 Aligned_cols=204 Identities=25% Similarity=0.374 Sum_probs=176.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EcCCCcccc-ccHHHhcCcC---CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 301 IPQEPTLFR-GSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
+||++.+|. .|++||+.+. ....++++.++++..++.+..+..+ .+|||||+||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA-----------KQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH-----------hhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998632 1234556777778887776555433 679999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhh
Q 044927 377 RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~ 441 (467)
+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .|||+++|++|++++.|++++
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999864 4789999999999986 599999999999999998765
No 234
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-45 Score=362.96 Aligned_cols=218 Identities=28% Similarity=0.470 Sum_probs=183.2
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--C
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--G 290 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~--~ 290 (467)
...|+++||+++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 346999999999964 359999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhcccEEEcCCCccccccHHHhcCcCCC---------------C-----CHHHHHHHHHHcChHHHHHhCCCccccc
Q 044927 291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---------------Y-----SDNEIWEAMEKCQLKATISRLPMLLDSS 350 (467)
Q Consensus 291 ~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---------------~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 350 (467)
...+|+.++|+||++.+|+.|++||+.+... . .++++.++++.+++.+ ++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence 4567889999999999998999999964210 0 0123444455554432 23334
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEE-EEE
Q 044927 351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMF-MVL 428 (467)
Q Consensus 351 v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i-~vl 428 (467)
+.....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 45667899999999999999999999999999999999999999999999997667899999999999865 9997 578
Q ss_pred eCCEEEEecChhhHhc
Q 044927 429 SYGELVEYDLPSKLME 444 (467)
Q Consensus 429 ~~G~iv~~g~~~~l~~ 444 (467)
++|++++.|+++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVEYDDTDKIFE 289 (305)
T ss_pred cCCEEEEeCCHHHHHh
Confidence 9999999999999875
No 235
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-45 Score=354.79 Aligned_cols=201 Identities=24% Similarity=0.294 Sum_probs=171.5
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 3599999999999999999999999999999999999999999999999987642 246899
Q ss_pred EcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
++|++.+|+ .|++||+.+.. ... .+++.++++..++.+...+ ...+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999887 59999996421 112 1235556666666554443 3478999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-C-CCceEEEEccChhHHhh-cCEEEEEe--CCEEEEecCh
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREE-F-PGSTVITVAHRVPTITD-SDMFMVLS--YGELVEYDLP 439 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~-~~~tvi~itH~l~~~~~-~d~i~vl~--~G~iv~~g~~ 439 (467)
+.+|++|||||||++||+.+...+.+.|++. . .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999886 3 48999999999998865 99999998 5999998764
No 236
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-45 Score=351.08 Aligned_cols=209 Identities=25% Similarity=0.440 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++|++++|++ + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999963 3 7999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred EcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+||++.+|. .|+.||+.+.. ..+ ++++.++++.+++.+++.+.+ .+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999885 69999996321 111 234556777777776665544 67999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+++|++++|||||++||+.+.+.+.+.+++... ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998643 8999999999999875 999999999999999999988754
No 237
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-45 Score=354.40 Aligned_cols=217 Identities=25% Similarity=0.417 Sum_probs=179.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCC--CCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-----~G~i~i~g~~i~~--~~~~ 292 (467)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999963 35999999999999999999999999999999999999874 8999999999864 3345
Q ss_pred HHhcccEEEcCCCccccc-cHHHhcCcC---CCC-CHHHHH----HHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 293 DLRTKLSIIPQEPTLFRG-SVRTNLDPL---GMY-SDNEIW----EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~-tv~enl~~~---~~~-~~~~~~----~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
.+|+.++|++|++.+|.. |+.||+.+. ... .+++.. +.++..++.+.+ + ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~----~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---K----DRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---h----hhhcCCcccCCHHHH
Confidence 678889999999998875 999999632 111 222222 223333332211 1 122334578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999885 999999999999999999998
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
+..
T Consensus 235 ~~~ 237 (252)
T PRK14272 235 FTN 237 (252)
T ss_pred HhC
Confidence 764
No 238
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.7e-45 Score=355.93 Aligned_cols=217 Identities=25% Similarity=0.413 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-----CCCCCHHH-
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKD- 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~-----i~~~~~~~- 293 (467)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999964 359999999999999999999999999999999999999999999999998 77665544
Q ss_pred ---HhcccEEEcCCCc--ccc-ccHHHhcCc----CCCCCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhH
Q 044927 294 ---LRTKLSIIPQEPT--LFR-GSVRTNLDP----LGMYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQ 362 (467)
Q Consensus 294 ---~r~~i~~v~Q~~~--lf~-~tv~enl~~----~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq 362 (467)
.++.++|+||++. ++. .|+.+|+.. .......+..+ ...++++.++ ++ +..+..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVE--IDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcC--CChhHHhCCCccCCHHH
Confidence 3567999999984 333 478888742 11111111111 1233444442 32 34456678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
|||++|||||+.+|++|||||||++||+.++..+.+.|++..+ +.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988532 7899999999999975 999999999999999999
Q ss_pred hhHhcc
Q 044927 440 SKLMET 445 (467)
Q Consensus 440 ~~l~~~ 445 (467)
+++...
T Consensus 237 ~~~~~~ 242 (258)
T PRK11701 237 DQVLDD 242 (258)
T ss_pred HHHhcC
Confidence 998754
No 239
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7.7e-45 Score=352.86 Aligned_cols=228 Identities=23% Similarity=0.340 Sum_probs=183.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHHh
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLR 295 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r 295 (467)
.++++|++++| + .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3589999999999999999999999999999999999999 999999999988632 2234
Q ss_pred cccEEEcCCCc-ccc--ccHHHhcCc----CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 296 TKLSIIPQEPT-LFR--GSVRTNLDP----LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 296 ~~i~~v~Q~~~-lf~--~tv~enl~~----~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
+.++|+||++. .|. .|+.+|+.. .+ ...++++.+.++.+++.+. ++.++....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 477777632 11 1223456666776665431 11334556889999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998863 37899999999999864 99999999999999999999876
Q ss_pred cC--chHHHHHHHHHhhh
Q 044927 445 TN--SAFSKLVAEYRSSY 460 (467)
Q Consensus 445 ~~--~~~~~l~~~~~~~~ 460 (467)
.. ..++.++..+...|
T Consensus 231 ~~~~~~~~~~~~~~~~~~ 248 (254)
T PRK10418 231 APKHAVTRSLVSAHLALY 248 (254)
T ss_pred CCCCHHHHHHHHhhhhcc
Confidence 42 23444555544444
No 240
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-45 Score=355.39 Aligned_cols=218 Identities=25% Similarity=0.442 Sum_probs=183.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCC--CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-----~G~i~i~g~~i~~--~~~ 291 (467)
+.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 36999999999964 35899999999999999999999999999999999999985 8999999998753 344
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
..+|+.++|+||++.+|+.|++||+.+. +..+. +.+.++++..++.+++.. ..+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 5678889999999999989999999632 11121 234455666665443322 23455678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC-----CEEEE
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY-----GELVE 435 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~-----G~iv~ 435 (467)
||++|||||+++|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||||++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998853 48999999999998875 999999999 99999
Q ss_pred ecChhhHhcc
Q 044927 436 YDLPSKLMET 445 (467)
Q Consensus 436 ~g~~~~l~~~ 445 (467)
.|+++++...
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999998753
No 241
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-45 Score=333.73 Aligned_cols=171 Identities=43% Similarity=0.740 Sum_probs=160.0
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997542358999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
++|++.+|+.|+.||+ ||||||||++||||++.+|+++|
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999987 89999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 381 LDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
|||||++||+.+...+.+.+++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998866899999999999988899999999985
No 242
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3e-45 Score=348.24 Aligned_cols=202 Identities=26% Similarity=0.360 Sum_probs=173.6
Q ss_pred EEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 044927 221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 295 (467)
Q Consensus 221 i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r 295 (467)
++++|+++.|+++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 14599999999999999999999999999999999999999999999999998766543 467
Q ss_pred cccEEEcCCCcccc-ccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 296 TKLSIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+.++|+||++.+|. .|+.||+.+.. .... +++.++++.+++.+..++.| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 88999999999987 59999996421 1222 23555667777766665554 68999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGEL 433 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~i 433 (467)
+||||++++|+++||||||++||+.++..+.+.|++.. .++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998864 37999999999997777999999999986
No 243
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=351.52 Aligned_cols=217 Identities=23% Similarity=0.375 Sum_probs=180.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCCC--CHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~--p---~~G~i~i~g~~i~~~--~~~ 292 (467)
.++++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 5899999999964 359999999999999999999999999999999999975 5 589999999988642 344
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcC---CCC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPL---GMY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~---~~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.+++.++|+||++.+|+.|+++|+.+. ... .+ +++.+.++.+++... +.........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHHH
Confidence 667889999999999989999999632 111 11 223344455444321 122334456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
..
T Consensus 236 ~~ 237 (252)
T PRK14255 236 LN 237 (252)
T ss_pred cC
Confidence 54
No 244
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.5e-45 Score=369.58 Aligned_cols=206 Identities=25% Similarity=0.349 Sum_probs=175.5
Q ss_pred eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcccEE
Q 044927 225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSI 300 (467)
Q Consensus 225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~i~~ 300 (467)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999963 2 35 999999999999999999999999999999999999999999999986532 2356778999
Q ss_pred EcCCCccccc-cHHHhcCcCC-CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 301 IPQEPTLFRG-SVRTNLDPLG-MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~-~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+||++.+|+. |++||+.+.. ... .+++.+.++..++.+..++. ..+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999997531 111 12355566666665555444 37899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998643 7899999999998865 999999999999999999998764
No 245
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1e-44 Score=354.50 Aligned_cols=224 Identities=23% Similarity=0.373 Sum_probs=181.6
Q ss_pred cEEEEeEEEEeCCC-------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-
Q 044927 220 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL- 291 (467)
Q Consensus 220 ~i~~~~vs~~y~~~-------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~- 291 (467)
.|+++||++.|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999887654
Q ss_pred --HHHhcccEEEcCCCc--cc-cccHHHhcCcC----CCCCHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChh
Q 044927 292 --KDLRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVG 361 (467)
Q Consensus 292 --~~~r~~i~~v~Q~~~--lf-~~tv~enl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgG 361 (467)
..+++.++|+||++. ++ ..|+.+|+.+. ......+ ....+.+.+..+ |+++ ..+.....||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346788999999983 44 35899997421 1111111 011123333332 3432 344566889999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 438 (467)
||||++|||||+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 9999999999999999999999999999999999999998864 27899999999999875 99999999999999999
Q ss_pred hhhHhccCchHH
Q 044927 439 PSKLMETNSAFS 450 (467)
Q Consensus 439 ~~~l~~~~~~~~ 450 (467)
++++.+....|.
T Consensus 236 ~~~~~~~~~~~~ 247 (268)
T PRK10419 236 VGDKLTFSSPAG 247 (268)
T ss_pred hhhccCCCCHHH
Confidence 999886555443
No 246
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=350.47 Aligned_cols=217 Identities=26% Similarity=0.404 Sum_probs=181.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC------EeCCCCCHHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG------LDICSMGLKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g------~~i~~~~~~~ 293 (467)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999964 4589999999999999999999999999999999999999997666665 5666666667
Q ss_pred HhcccEEEcCCCccccc-cHHHhcCcCC---CC-CHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 294 LRTKLSIIPQEPTLFRG-SVRTNLDPLG---MY-SDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~-~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
+|+.++|+||++.+|.+ |+++|+.+.. .. .+++ +.++++..++.+.+ ....+..+..|||||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 88999999999999875 9999996421 11 2222 34455555553222 11233456789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999985 59999999999999999999987
Q ss_pred cc
Q 044927 444 ET 445 (467)
Q Consensus 444 ~~ 445 (467)
+.
T Consensus 241 ~~ 242 (257)
T PRK14246 241 TS 242 (257)
T ss_pred hC
Confidence 64
No 247
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=342.87 Aligned_cols=197 Identities=24% Similarity=0.321 Sum_probs=165.1
Q ss_pred eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcccEE
Q 044927 225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSI 300 (467)
Q Consensus 225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~i~~ 300 (467)
||+++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999753 24 99999999 999999999999999999999999999999999999886432 2356788999
Q ss_pred EcCCCcccc-ccHHHhcCcCC-CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG-MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~-~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+||++.+|. .|+++|+.+.. ... ++++.+.++..++.+.. .....+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHHHHhc
Confidence 999999886 49999996421 111 22344555555554433 34457899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
+|+++||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998863 3 7899999999999864 9999999999998865
No 248
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.4e-44 Score=347.34 Aligned_cols=208 Identities=25% Similarity=0.376 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999987 24699
Q ss_pred EEcCCCcccc---ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 300 IIPQEPTLFR---GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 300 ~v~Q~~~lf~---~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
|+||++.++. .|+.+|+.......++++.++++.+++.+..++.+ ..||||||||++||||++.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPM-----------QKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCCh-----------hhCCHHHHHHHHHHHHHhcCC
Confidence 9999987764 37888875433344567788888888877665543 689999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927 377 RILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~ 453 (467)
+++||||||++||+.++..+.+.|++.. + ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+ ...|.+++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 9999999999999999999999998864 3 7899999999999865 999999965 7999999999864 34444443
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=352.57 Aligned_cols=209 Identities=22% Similarity=0.332 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999633 459999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcCCCcc---ccccHHHhcCcCC--------CC---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 300 IIPQEPTL---FRGSVRTNLDPLG--------MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 300 ~v~Q~~~l---f~~tv~enl~~~~--------~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
|+||++.+ +..++++|+.+.. .. .++.+.++++..++.+..++ ...+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----------QIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHH
Confidence 99999865 3457888875310 01 12234556677777655433 336799999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998864 47999999999998764 9999777 89999999999986
Q ss_pred c
Q 044927 444 E 444 (467)
Q Consensus 444 ~ 444 (467)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
No 250
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=8.6e-42 Score=355.90 Aligned_cols=409 Identities=20% Similarity=0.196 Sum_probs=294.0
Q ss_pred chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q 044927 2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLI---------------VAIPTVIVAKYIQGYYLSSAR 66 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l---------------i~~~~~~~~~~~~~~~~~~~~ 66 (467)
.|+..|+..+-+........++.++++++.+.++++..+-.+++ +++..+++..++...+.+...
T Consensus 152 QRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li 231 (604)
T COG4178 152 QRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLI 231 (604)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccc
Confidence 47888998888777777788888888888888777744433211 111111222222333333333
Q ss_pred HHHHHhccccccHHHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 044927 67 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLV---LRIEALQNLIILTAA 143 (467)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 143 (467)
.+.-...+..+.+...+.-.-++.+.|-.|+.|+...++.+..+....+.+.+.......+. .....+.. +.....
T Consensus 232 ~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~li 310 (604)
T COG4178 232 RLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLPILI 310 (604)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHHh
Confidence 33322233344555566677788899999999998877776666655554433333322222 11111111 111111
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCccCCCCCCCCCC
Q 044927 144 LLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL------PPEPPAIIEETKPPASWPS 217 (467)
Q Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~------~~~~~~~~~~~~~~~~~~~ 217 (467)
..-.+..|.++.|.+......+..+...+.++...+..+....+...|+.++.+. +++.+.... .........
T Consensus 311 ~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~ 389 (604)
T COG4178 311 AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNA 389 (604)
T ss_pred ccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccc
Confidence 1112455889999887777777778888888889999999999999999998742 111111000 000000001
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
...|+++|++..-+++. ..++++||++++||.+-|.||||||||||+|+|+|++|..+|+|.+-. -..
T Consensus 390 ~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~ 457 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSA 457 (604)
T ss_pred cceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCc
Confidence 35799999999998655 689999999999999999999999999999999999999999987641 125
Q ss_pred cEEEcCCCccccccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 298 LSIIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 298 i~~v~Q~~~lf~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+-|+||.|++..||.||-+++.. .++++++.+++.+|+|.++++++.+- + +-...||+|||||+++||.+++
T Consensus 458 ~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~----~W~~vLS~GEqQRlafARilL~ 532 (604)
T COG4178 458 LLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-D----RWDRVLSGGEQQRLAFARLLLH 532 (604)
T ss_pred eEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-C----cHhhhcChhHHHHHHHHHHHHc
Confidence 78999999999999999997532 37899999999999999999997532 2 2346799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEe
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS 429 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~ 429 (467)
+|++++|||+||+||++++..+++.+++..++.|+|.|+||.......++.+-+.
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999999889999999999998887766655554
No 251
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-44 Score=371.77 Aligned_cols=223 Identities=27% Similarity=0.455 Sum_probs=186.7
Q ss_pred ccEEEEeEEEEeCCC---------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe--CC
Q 044927 219 GRIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--IC 287 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~---------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~--i~ 287 (467)
.-++++|++++|... ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 358899999999731 2358999999999999999999999999999999999999999999999987 22
Q ss_pred CCCHHHHhcccEEEcCCCcc---ccccHHHhcCc-C---CCCC----HHHHHHHHHHcChHH-HHHhCCCcccccccCCC
Q 044927 288 SMGLKDLRTKLSIIPQEPTL---FRGSVRTNLDP-L---GMYS----DNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEG 355 (467)
Q Consensus 288 ~~~~~~~r~~i~~v~Q~~~l---f~~tv~enl~~-~---~~~~----~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g 355 (467)
.-+....|+++-+|+|||+- ...||.++|.- . .... .+.+.+.++.+++.. +..+.|
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP----------- 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP----------- 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------
Confidence 22344578899999999974 35699999851 1 1111 234666788888875 566665
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
.+||||||||+||||||+.+|+++|+|||||+||+.++..+.+.|+++.+ |.|.|+||||++.++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 78999999999999999999999999999999999999999999998643 7999999999999997 99999999999
Q ss_pred EEEecChhhHhcc-CchHHHH
Q 044927 433 LVEYDLPSKLMET-NSAFSKL 452 (467)
Q Consensus 433 iv~~g~~~~l~~~-~~~~~~l 452 (467)
|||.|+.+++++. ...|.+.
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~ 528 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRK 528 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHH
Confidence 9999999999874 4445443
No 252
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-44 Score=331.18 Aligned_cols=172 Identities=33% Similarity=0.522 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHhccc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL 298 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~i 298 (467)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 478999999964 35999999999999999999999999999999999999999999999999988775 56678899
Q ss_pred EEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
+|++|++.+|.. |++||+.+. ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998864 999998642 89999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 378 ILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
++||||||++||+.++..+.+.|++..+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988643 6899999999999984 99999999985
No 253
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-44 Score=330.07 Aligned_cols=170 Identities=31% Similarity=0.558 Sum_probs=156.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 468999999964 35999999999999999999999999999999999999999999999999987655 567889999
Q ss_pred EcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 301 IPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
+||++.+|.+ |+.||+. |||||+||++|||||+.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998876 9999973 8999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEE
Q 044927 380 VLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGEL 433 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~i 433 (467)
||||||++||+.+...+.+.|++.. ++.|+|++||+++.+. .||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999864 4789999999999888 4999999999974
No 254
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.5e-44 Score=347.29 Aligned_cols=216 Identities=24% Similarity=0.393 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-----CCCCCHHH-
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKD- 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~-----i~~~~~~~- 293 (467)
.++++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 348999999999999999999999999999999999999999999999987 66665543
Q ss_pred ---HhcccEEEcCCCc--cc-cccHHHhcCc----CCCCCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhH
Q 044927 294 ---LRTKLSIIPQEPT--LF-RGSVRTNLDP----LGMYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQ 362 (467)
Q Consensus 294 ---~r~~i~~v~Q~~~--lf-~~tv~enl~~----~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq 362 (467)
+++.++|++|++. ++ ..|+.+|+.. .......+.. ..+.++++.+. ++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~l~--l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----AAAHDWLEEVE--IDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHcC--CChhhhhcCchhcCHHH
Confidence 2467999999985 22 3478888732 1111111110 12234444442 32 34455668899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998853 37999999999999885 999999999999999999
Q ss_pred hhHhc
Q 044927 440 SKLME 444 (467)
Q Consensus 440 ~~l~~ 444 (467)
+++..
T Consensus 234 ~~~~~ 238 (253)
T TIGR02323 234 DQVLD 238 (253)
T ss_pred HHHhc
Confidence 99875
No 255
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-42 Score=337.23 Aligned_cols=417 Identities=20% Similarity=0.227 Sum_probs=290.3
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+.++++|+.++. +-...++.++++.+.++++.+.++++||++.+++++.+++..+.....+.+..+......+...++.
T Consensus 108 la~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq 186 (546)
T COG4615 108 LAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQ 186 (546)
T ss_pred hhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 367899999998 4455677899999999999999999999998887766666555433333333333333344556788
Q ss_pred HHHHHHHchHHHHHHccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFF--ENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPG 156 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g 156 (467)
+..+..+.|.++++...--.+.. +.+....+...+ +....+.....-....+.+...+++.. +....+.-+..
T Consensus 187 ~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~---~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~ 263 (546)
T COG4615 187 NDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH---HIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTN 263 (546)
T ss_pred HHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 89999999999999876443322 222211111111 111111110000011111111111111 11122333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCc
Q 044927 157 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPL 236 (467)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~ 236 (467)
....++.....+..|+..+......+..+.++.+|+.++-..|+.. .... +...|.-..++++||.|.|.++. .
T Consensus 264 ~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a-~~~~----~q~~p~~~~lelrnvrfay~~~~-F 337 (546)
T COG4615 264 VAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA-DFPR----PQAFPDWKTLELRNVRFAYQDNA-F 337 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc-cCCC----CCcCCcccceeeeeeeeccCccc-c
Confidence 3333333344566788888888888999999999999875432211 1111 11112234699999999997654 3
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
-+..||++|++||++-|+|.|||||||+++++.|+|.|++|+|++||.+++.-+++++|+-++-|+-|.+||+.++
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll---- 413 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL---- 413 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
.+-+.++.+.+...+++..+.+...-. +|-- .-..||.|||+|+++--|++-+.||+++||=-+--||.-++.+
T Consensus 414 ~~e~~as~q~i~~~LqrLel~~ktsl~-d~~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~F 487 (546)
T COG4615 414 GPEGKASPQLIEKWLQRLELAHKTSLN-DGRF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREF 487 (546)
T ss_pred CCccCCChHHHHHHHHHHHHhhhhccc-CCcc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHH
Confidence 111235666666666665554433221 1110 0157899999999999999999999999999999999999988
Q ss_pred HHHHHHH--CCCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927 397 QRIIREE--FPGSTVITVAHRVPTITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 397 ~~~l~~~--~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g 437 (467)
.+.+-.. ..||||+.||||-.....|||++.|++|+++|.-
T Consensus 488 Y~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 488 YQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 8877553 3599999999999999999999999999999864
No 256
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.2e-44 Score=343.70 Aligned_cols=203 Identities=24% Similarity=0.333 Sum_probs=167.9
Q ss_pred EEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHHh
Q 044927 221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLR 295 (467)
Q Consensus 221 i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r 295 (467)
+.++||+++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 2569999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cccEEEcCCCccccc-cHHHhcCcCCC----C-CHHH-----HHH-HHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 296 TKLSIIPQEPTLFRG-SVRTNLDPLGM----Y-SDNE-----IWE-AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~~-tv~enl~~~~~----~-~~~~-----~~~-~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
+.++|+||++.+|++ |++||+.+... . ..+. +.+ .++..+ +..........|||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----------LTRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhc-----------chhhhcccccCcCHHHH
Confidence 889999999999987 99999964210 0 0111 111 222222 22233345578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccCh-hHH-hhcCEEEEEeCCEEEEec
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRV-PTI-TDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l-~~~-~~~d~i~vl~~G~iv~~g 437 (467)
||++|||||+++|+++||||||++||+.+...+.+.+++.. +++|+|++||++ +.+ +.||++++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998864 478999999998 455 459999999999999865
No 257
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=326.28 Aligned_cols=212 Identities=25% Similarity=0.394 Sum_probs=186.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+.+|+|++-.+ +.+|+++||++++||..||+||||||||||+|.|+|...|++|++.++|.+++.+++.++.++-++
T Consensus 2 i~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 788999998854 348999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcc-ccccHHHhcCcCC-------CCCHHH--HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 301 IPQEPTL-FRGSVRTNLDPLG-------MYSDNE--IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 301 v~Q~~~l-f~~tv~enl~~~~-------~~~~~~--~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
+||+..+ |+-|++|-+.++. ...+++ ..+++.++++..+..+. -..|||||||||.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999887 8899999986542 111333 56788888887776553 2679999999999999
Q ss_pred HhcC------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927 371 VLLK------RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 371 al~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 442 (467)
+|++ ++++|+||||||+||...+..+++..+++. .|..|+.|-||++... +||||++|++||+++.|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9985 346999999999999999999999999864 5899999999999765 5999999999999999999999
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
No 258
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-44 Score=346.99 Aligned_cols=223 Identities=25% Similarity=0.454 Sum_probs=182.5
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-C----CccEEEEcCEeCCCCCHHH
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-P----ENGRILIDGLDICSMGLKD 293 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p----~~G~i~i~g~~i~~~~~~~ 293 (467)
++++|++..|.... ..+++||||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|.|+..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999996432 358999999999999999999999999999999999998 4 5799999999999998775
Q ss_pred H---h-cccEEEcCCCcc-cc--ccHHHhc----CcCCCC-C----HHHHHHHHHHcChHH---HHHhCCCcccccccCC
Q 044927 294 L---R-TKLSIIPQEPTL-FR--GSVRTNL----DPLGMY-S----DNEIWEAMEKCQLKA---TISRLPMLLDSSVSDE 354 (467)
Q Consensus 294 ~---r-~~i~~v~Q~~~l-f~--~tv~enl----~~~~~~-~----~~~~~~~~~~~~l~~---~i~~l~~g~~t~v~~~ 354 (467)
+ | +.|++|||+|.- ++ .||.+-+ ...... + .++..+.++.+++.+ .++..|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 3 3 479999999852 22 2555444 211111 1 235667788888764 344555
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYG 431 (467)
Q Consensus 355 g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G 431 (467)
.+||||||||+.||-||+.+|++||-||||+|||...+.+|.+.|+++. .|.|+|+||||+..+.. ||||+||.+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 7899999999999999999999999999999999999999999999865 48999999999998775 9999999999
Q ss_pred EEEEecChhhHhcc--CchHHHHHH
Q 044927 432 ELVEYDLPSKLMET--NSAFSKLVA 454 (467)
Q Consensus 432 ~iv~~g~~~~l~~~--~~~~~~l~~ 454 (467)
+|||.|+.+++++. +..-+.|++
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999973 333344443
No 259
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-44 Score=336.27 Aligned_cols=190 Identities=24% Similarity=0.295 Sum_probs=160.8
Q ss_pred cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHH
Q 044927 220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDL 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~ 294 (467)
.+.++||+|.|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999743 4569999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hcccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 295 RTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
++.++|++|++.+|.. |++||+.+.... . ..+....||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 7789999999988864 999999642100 0 12334679999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEc-cChhHHh-hcCEEEEEeCCEEEEec
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVA-HRVPTIT-DSDMFMVLSYGELVEYD 437 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~l~~~~-~~d~i~vl~~G~iv~~g 437 (467)
.+|+++||||||++||+.+++.+.+.+++..+ +.|+|+++ |+++.+. .||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998643 56666655 5566665 59999999999998764
No 260
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.3e-44 Score=338.54 Aligned_cols=193 Identities=26% Similarity=0.377 Sum_probs=163.0
Q ss_pred EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhccc
Q 044927 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTKL 298 (467)
Q Consensus 223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~i 298 (467)
++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999963 359999999999999999999999999999999999999999999999999764432 2356789
Q ss_pred EEEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
+|++|++.+|. .|++||+.+.. ... .+++.++++..++.+..++ ...+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999987 59999996421 111 2345566677666554433 34679999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL 428 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl 428 (467)
||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||++++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 479999999999988789999875
No 261
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.7e-44 Score=378.94 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-ccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r-~~i 298 (467)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999877766554 569
Q ss_pred EEEcCCCccccc-cHHHhcCcCCCCC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGMYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+|+||++.+|.. |++||+.+..... .+++.++++..++.+. ......+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999988865 9999997532111 2344455555555332 233447899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998863 47999999999998865 99999999999999999988754
No 262
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.8e-44 Score=330.16 Aligned_cols=177 Identities=34% Similarity=0.527 Sum_probs=158.9
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v 301 (467)
+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3599999999999999999999999999999999999999999999999999888877888889999
Q ss_pred cCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEe
Q 044927 302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381 (467)
Q Consensus 302 ~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliL 381 (467)
|| +++.+++.++..+. ..+||||||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADRP-----------FNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 55666666655433 368999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEec
Q 044927 382 DEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYD 437 (467)
Q Consensus 382 DEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g 437 (467)
||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999988644 789999999999985 59999999999998654
No 263
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=8.8e-44 Score=344.99 Aligned_cols=211 Identities=19% Similarity=0.248 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHHhc-
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDLRT- 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~- 296 (467)
.++++||++.|++ +.+|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|+++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999964 3599999999999999999999999999999999998 6899999999999998877665554
Q ss_pred ccEEEcCCCccccc-cHHHhcCcCCC----------CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCC-CCCh
Q 044927 297 KLSIIPQEPTLFRG-SVRTNLDPLGM----------YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE-NWSV 360 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~-tv~enl~~~~~----------~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~-~LSg 360 (467)
.++|++|++.+|++ |+.+|+.+... .. .+++.++++.+++.+ +..+.... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999998876 88888753110 01 112334455555431 11222233 5999
Q ss_pred hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEec
Q 044927 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYD 437 (467)
Q Consensus 361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g 437 (467)
|||||++|||||+++|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998864 48999999999998875 8999999999999999
Q ss_pred ChhhH
Q 044927 438 LPSKL 442 (467)
Q Consensus 438 ~~~~l 442 (467)
+++.+
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 98743
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.9e-44 Score=333.53 Aligned_cols=185 Identities=26% Similarity=0.384 Sum_probs=162.2
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~-r~~ 297 (467)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 3599999999999999999999999999999999999 58999999999999988776554 556
Q ss_pred cEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
++|+||++.+|++ ++++|+ ... ..+||||||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~~-----------~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RYV-----------NEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hhc-----------cccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998876 555554 011 1479999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh--hcCEEEEEeCCEEEEecChhhHh
Q 044927 377 RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT--DSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~--~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999999864 4789999999999988 69999999999999999 44453
No 265
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.8e-44 Score=333.35 Aligned_cols=182 Identities=25% Similarity=0.414 Sum_probs=160.3
Q ss_pred cEEEEeEEEEeCCC----CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHH
Q 044927 220 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~----~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~g~~i~~~~~~~ 293 (467)
.++++||+|+|++. .+++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999742 245999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhcccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 294 LRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+++.++|+||++.+|.. |++||+.+.. . + ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-----~----~------------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-----K----L------------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-----H----h------------------------ccCCHHHHHHHHHHHHH
Confidence 67889999999988864 9999984210 0 0 06999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChh-HHh-hcCEEEEEeCCEEEEec
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVP-TIT-DSDMFMVLSYGELVEYD 437 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~-~~d~i~vl~~G~iv~~g 437 (467)
+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 4899999999996 454 59999999999998754
No 266
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.4e-43 Score=342.86 Aligned_cols=205 Identities=23% Similarity=0.323 Sum_probs=172.8
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v 301 (467)
+++||++. . +|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~-----~-~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS-----T-RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh-----c-eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 46777774 1 79999999999999999999999999999999999965 99999999999888877888889999
Q ss_pred cCCCccc-cccHHHhcCcCCC--CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 302 PQEPTLF-RGSVRTNLDPLGM--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 302 ~Q~~~lf-~~tv~enl~~~~~--~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
||++.++ ..|+++|+.+... .. .+++.++++..++.+..+ .....||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 9998654 5799999975321 11 123445556655544333 3447899999999999999997
Q ss_pred -------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927 375 -------RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 375 -------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998864 4799999999999775 499999999999999999998864
No 267
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.9e-44 Score=378.31 Aligned_cols=211 Identities=22% Similarity=0.331 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i 298 (467)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999963 35999999999999999999999999999999999999999999999999987655444 35689
Q ss_pred EEEcCCCccccc-cHHHhcCcCCC-------CCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGM-------YSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~-------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+|+||++.+|.. |++||+.+... .+.. ++.++++..++ .........+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL-----------RFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC-----------CCCccCchhhCCHHHHHHH
Confidence 999999988865 99999965311 1111 22333333333 2223344578999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+|||||+.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998863 47899999999998875 9999999999999999988764
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-44 Score=378.08 Aligned_cols=211 Identities=25% Similarity=0.391 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHH-Hhc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~-~r~ 296 (467)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999963 3599999999999999999999999999999999999996 8999999999998766554 467
Q ss_pred ccEEEcCCCccccc-cHHHhcCcCCC------CCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 297 KLSIIPQEPTLFRG-SVRTNLDPLGM------YSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
.++||||++.+|.. |++||+.+... .+.+ ++.++++..+ ++........+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLK-----------LDINPATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcC-----------CCCCcccchhhCCHHHHHH
Confidence 89999999988865 99999964321 1211 2233333333 3333344557899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998863 47899999999999875 9999999999999999988874
No 269
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=379.59 Aligned_cols=211 Identities=21% Similarity=0.331 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i 298 (467)
.++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998777654 34679
Q ss_pred EEEcCCCccccc-cHHHhcCcCCC-----C-----CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGM-----Y-----SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~-----~-----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
+||||++.+|.. |++||+.+... . +. +++.++++..++ .........+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-----------KVDLDEKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHHH
Confidence 999999988865 99999964211 0 11 122333333333 2233444578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 441 (467)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998863 47999999999999875 99999999999999999988
Q ss_pred Hh
Q 044927 442 LM 443 (467)
Q Consensus 442 l~ 443 (467)
+.
T Consensus 232 ~~ 233 (510)
T PRK09700 232 VS 233 (510)
T ss_pred CC
Confidence 75
No 270
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=383.35 Aligned_cols=215 Identities=24% Similarity=0.406 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCC---------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 044927 220 RIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 290 (467)
Q Consensus 220 ~i~~~~vs~~y~~~---------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~ 290 (467)
.++++||++.|+.. ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 135899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhcccEEEcCCCc--ccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChH-HHHHhCCCcccccccCCC
Q 044927 291 LK---DLRTKLSIIPQEPT--LFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLK-ATISRLPMLLDSSVSDEG 355 (467)
Q Consensus 291 ~~---~~r~~i~~v~Q~~~--lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g 355 (467)
.. .+|++|+||||++. +++ .|+.+|+... ..... +++.+.++.+++. +..++.|
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----------- 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP----------- 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------
Confidence 43 35778999999983 665 4999998531 11111 3455667777763 4444444
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. .+.|+|+|||+++.+.. ||||++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999998863 37899999999999876 99999999999
Q ss_pred EEEecChhhHhcc
Q 044927 433 LVEYDLPSKLMET 445 (467)
Q Consensus 433 iv~~g~~~~l~~~ 445 (467)
|++.|+++++...
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999999753
No 271
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.3e-44 Score=328.48 Aligned_cols=172 Identities=28% Similarity=0.490 Sum_probs=155.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i 298 (467)
.++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999988764 4567889
Q ss_pred EEEcCCC---ccc-cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 299 SIIPQEP---TLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 299 ~~v~Q~~---~lf-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+|+||++ .++ ..|++||+.+... ||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999863210 89999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47999999999998876 999999999974
No 272
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-44 Score=331.74 Aligned_cols=181 Identities=25% Similarity=0.373 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHHh
Q 044927 220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDLR 295 (467)
Q Consensus 220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r 295 (467)
.++++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 245999999999999999999999999999999999986 489999999999875 4567
Q ss_pred cccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 296 TKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
++++|++|++.+|.. |++||+.+.. .++ +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988875 9999986310 000 699999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH-H-hhcCEEEEEeC-CEEEEec
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT-I-TDSDMFMVLSY-GELVEYD 437 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~-G~iv~~g 437 (467)
+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++. + ..||++++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999864 47999999999984 4 56999999999 9999865
No 273
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.9e-43 Score=321.16 Aligned_cols=164 Identities=32% Similarity=0.440 Sum_probs=149.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4789999999643 45999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
++|++.+++.|++||+.+. ....||||||||++||||++++|+++|
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999999642 136899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 381 LDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
|||||++||+.+.+.+.+.+++. ++|+|++||+++....||++++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999886 589999999998877899999998863
No 274
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.2e-43 Score=338.73 Aligned_cols=210 Identities=20% Similarity=0.244 Sum_probs=166.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHHh-cc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDLR-TK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r-~~ 297 (467)
++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 35999999999999999999999999999999999994 69999999999998877765554 57
Q ss_pred cEEEcCCCccccc-cHHHhcCc-------CCC---CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCC-CCCChh
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDP-------LGM---YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEG-ENWSVG 361 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~-------~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g-~~LSgG 361 (467)
++|++|++.++.. |..+++.. ... ... +.+.+.++..+ +|.++.+. .. ..||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~---~~~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLTR---SVNVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhccc---CCCCCCCHH
Confidence 9999999987654 44443321 100 000 11112222222 22222221 12 379999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEecC
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g~ 438 (467)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 9999999999999999999999999999999999999998864 37899999999999886 89999999999999999
Q ss_pred hhhH
Q 044927 439 PSKL 442 (467)
Q Consensus 439 ~~~l 442 (467)
++.+
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8854
No 275
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.6e-43 Score=339.88 Aligned_cols=191 Identities=26% Similarity=0.370 Sum_probs=157.3
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc-CCCcccc-ccH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLFR-GSV 312 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf~-~tv 312 (467)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+|. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3599999999999999999999999999999999999999999999999986543 345678899998 5566764 599
Q ss_pred HHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCC
Q 044927 313 RTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385 (467)
Q Consensus 313 ~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpt 385 (467)
+||+.+.. ....++ +.++++..++.+..+ .....||||||||++|||||+.+|++|||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-----------TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99985321 122222 333444445443332 234679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 386 ASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 386 s~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999864 37899999999998765 9999999999998765
No 276
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.4e-43 Score=329.53 Aligned_cols=194 Identities=26% Similarity=0.347 Sum_probs=166.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 35899999999999999999999999999999999999999999999999876543 467889999
Q ss_pred EcCCCccc-cccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 301 IPQEPTLF-RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 301 v~Q~~~lf-~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
+||++.++ ..|++||+.+.. ...++++.++++..++.++.++. ..+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP-----------VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCc-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 469999996532 23456677788888887554332 367999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEE
Q 044927 379 LVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVL 428 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl 428 (467)
+||||||++||+.+++.+.+.|++.. +++|+|++||+...+. .||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998754 4799999999877655 58999887
No 277
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.7e-43 Score=373.00 Aligned_cols=211 Identities=19% Similarity=0.215 Sum_probs=181.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999964 34999999999999999999999999999999999999999999999998887666667777899
Q ss_pred EEcCCCcc--c-------cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 300 IIPQEPTL--F-------RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 300 ~v~Q~~~l--f-------~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|++|++.+ + ..|+++|+... ...++++.++++..++.+..++.+ .+||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRF-----------KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99998753 2 34888887532 112345667777777766555443 789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998864 47899999999998876 99999999999999999988765
No 278
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.3e-43 Score=337.49 Aligned_cols=190 Identities=25% Similarity=0.370 Sum_probs=161.1
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhc
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNL 316 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl 316 (467)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|. .|+.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999887 5999998
Q ss_pred CcC-----CCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCC
Q 044927 317 DPL-----GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387 (467)
Q Consensus 317 ~~~-----~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~ 387 (467)
.+. ....+. ++.+.++..++.+..++ ....||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 112222 24555666666554443 3468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 388 IDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 388 LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998853 37899999999998765 9999999999999999876663
No 279
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.4e-43 Score=363.24 Aligned_cols=217 Identities=24% Similarity=0.431 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCCCC--ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC----ccEEEEcCEeCCCCCHHH
Q 044927 220 RIELEDLKVRYRPNTP--LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE----NGRILIDGLDICSMGLKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~--~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~----~G~i~i~g~~i~~~~~~~ 293 (467)
-++++|+++.|..... .+++|+||++.+||++||||+|||||||+.++|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999964432 4899999999999999999999999999999999999988 899999999999888765
Q ss_pred Hh----cccEEEcCCCc-ccc--ccHHHhcC----cCCCC----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927 294 LR----TKLSIIPQEPT-LFR--GSVRTNLD----PLGMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358 (467)
Q Consensus 294 ~r----~~i~~v~Q~~~-lf~--~tv~enl~----~~~~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L 358 (467)
.| +.|+||||+|. .++ .||.+-|. ..... ..++..+.++.+++.+-... .....+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 43 56999999985 344 36665553 11111 12345567777777654443 2234789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~ 435 (467)
|||||||+.||+||+.+|++||+||||++||+.++.+|++.|+++. .|.++|+|||++..+.. ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 58999999999999876 99999999999999
Q ss_pred ecChhhHhcc
Q 044927 436 YDLPSKLMET 445 (467)
Q Consensus 436 ~g~~~~l~~~ 445 (467)
.|++++++++
T Consensus 236 ~G~~~~i~~~ 245 (539)
T COG1123 236 TGPTEEILSN 245 (539)
T ss_pred ecCHHHHHhc
Confidence 9999999974
No 280
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.8e-43 Score=329.25 Aligned_cols=194 Identities=24% Similarity=0.367 Sum_probs=167.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 35999999999999999999999999999999999999999999999999987543 456778999
Q ss_pred EcCCCcccc-ccHHHhcCcCCC----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 301 IPQEPTLFR-GSVRTNLDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
++|++.+++ .|++||+.+... ..++++.++++..++.++.++. ...||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 599999964311 2345667788888887655443 367999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhc-CEEEEE
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDS-DMFMVL 428 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~-d~i~vl 428 (467)
|+++||||||++||+.+...+.+.|++. .+++|+|++||+++.+..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999999886 3478999999999999764 677776
No 281
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.4e-43 Score=335.59 Aligned_cols=199 Identities=24% Similarity=0.357 Sum_probs=163.8
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHHhcccEEEcCCCc-cc-c-
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LF-R- 309 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 309 (467)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 47899999999999999999999999999999999999 899999999988654 222468999999985 34 3
Q ss_pred ccHHHhcCcC----CCCC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEee
Q 044927 310 GSVRTNLDPL----GMYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382 (467)
Q Consensus 310 ~tv~enl~~~----~~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLD 382 (467)
.|+.+|+.+. .... .+++.++++.+++.+. ++........||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4888887421 1111 2235556666655411 12234455789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 383 EATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 383 Epts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999864 37899999999999875 999999999999999999999754
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.8e-43 Score=315.57 Aligned_cols=159 Identities=31% Similarity=0.547 Sum_probs=147.2
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcccE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKLS 299 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i~ 299 (467)
++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 478999999964 3599999999999999999999999999999999999999999999999999877654 4577899
Q ss_pred EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
|++| ||||||||++||||++++|+++
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927 380 VLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~ 435 (467)
||||||++||+.+++.+.+.+++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998864 48899999999998765 99999999999975
No 283
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-43 Score=370.93 Aligned_cols=212 Identities=22% Similarity=0.337 Sum_probs=174.8
Q ss_pred EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcccEEE
Q 044927 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKLSII 301 (467)
Q Consensus 223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i~~v 301 (467)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 3599999999999999999999999999999999999999999999999998766543 456789999
Q ss_pred cCCCcccc-ccHHHhcCcCCC------CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 302 PQEPTLFR-GSVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 302 ~Q~~~lf~-~tv~enl~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
||++.+|. .|++||+.+... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998775 599999964211 12221111 122333333 34334445568899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998863 57899999999998875 9999999999999999988864
No 284
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.2e-43 Score=327.48 Aligned_cols=193 Identities=22% Similarity=0.285 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999998864 34567889999
Q ss_pred EcCCCcccc-ccHHHhcCcCC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
+||++.++. .|+++|+.+.. ...+..+.++++..++.+..+ ....+|||||+||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-----------YPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998864 69999986431 112234455555555543322 2335799999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEEE
Q 044927 378 ILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~v 427 (467)
+|||||||++||+.+...+.+.|++. .+++|+|++||+.+.+..||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999999999985 358999999999999999997654
No 285
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-43 Score=369.95 Aligned_cols=207 Identities=27% Similarity=0.358 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i 298 (467)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999875543 3467889
Q ss_pred EEEcCCCccccc-cHHHhcCcCC--C----CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLG--M----YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~--~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
+|+||++.+|.. |+.+|+.+.. . ... +++.++++.+++ +........+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV-----------DIDPDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC-----------CCCcCCchhhCCHHHHHHHH
Confidence 999999988875 9999996421 1 111 123334444333 22233445789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+++..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998864 47999999999998875 999999999999987654
No 286
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=312.08 Aligned_cols=213 Identities=26% Similarity=0.414 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----------
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---------- 289 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~---------- 289 (467)
.++++|+.++|+.. .+|+++|++-++|+.+.|+|.|||||||++++|.=+..|+.|+|.++|..+.-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58999999999754 399999999999999999999999999999999999999999999999877421
Q ss_pred C---HHHHhcccEEEcCCCcccc-ccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927 290 G---LKDLRTKLSIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 357 (467)
Q Consensus 290 ~---~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~ 357 (467)
+ .+.+|.+.++|+|+..|++ .|+.||+.-.+ ..+. ++.+..+.++|+.+..+..| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 1 2457889999999999986 49999984211 1222 23344677778777766666 78
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927 358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435 (467)
Q Consensus 358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~ 435 (467)
|||||+||++|||||+.+|+++++|||||+|||+-.-.+.+.++++. +|+|.+++||.+.+++. +.+|+++++|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999999999999865 59999999999999998 89999999999999
Q ss_pred ecChhhHhcc
Q 044927 436 YDLPSKLMET 445 (467)
Q Consensus 436 ~g~~~~l~~~ 445 (467)
+|+|++++..
T Consensus 233 ~G~P~qvf~n 242 (256)
T COG4598 233 EGPPEQVFGN 242 (256)
T ss_pred cCChHHHhcC
Confidence 9999999864
No 287
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-43 Score=306.47 Aligned_cols=194 Identities=24% Similarity=0.394 Sum_probs=169.2
Q ss_pred eCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927 230 YRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 309 (467)
Q Consensus 230 y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 309 (467)
|.....++|+|+||++.+||.++|.||||||||||+|.++-+.+|++|.+++.|++++.++++.+|++++|+.|.|.||.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 43344569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcCcC-----CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927 310 GSVRTNLDPL-----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384 (467)
Q Consensus 310 ~tv~enl~~~-----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp 384 (467)
+||+||+.+- ...+.......++++++.+ +.+..+..+||||||||++|+|-|.--|+||+||||
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred cchhhccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999642 1233344444555555544 334456688999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhH-HhhcCEEEEEeCCEE
Q 044927 385 TASIDSATDAILQRIIREEF--PGSTVITVAHRVPT-ITDSDMFMVLSYGEL 433 (467)
Q Consensus 385 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~-~~~~d~i~vl~~G~i 433 (467)
||+||+.+.+.|-+.|.++. ++..++.|||+.+. ++.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999999999998864 47899999999987 778999999999986
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-42 Score=371.16 Aligned_cols=217 Identities=23% Similarity=0.410 Sum_probs=177.9
Q ss_pred cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHH
Q 044927 220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~~~ 292 (467)
.++++|++++|+++ ..++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 23599999999999999999999999999999999999987 799999999999876644
Q ss_pred H---Hh-cccEEEcCCCc--ccc-ccHHHhcCcC----CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927 293 D---LR-TKLSIIPQEPT--LFR-GSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 357 (467)
Q Consensus 293 ~---~r-~~i~~v~Q~~~--lf~-~tv~enl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~ 357 (467)
+ +| +++||+||++. +++ .|+.+|+.+. ...+ .+++.++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 33 57999999985 444 4888887421 1112 234555666666643110 11223478
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927 358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELV 434 (467)
Q Consensus 358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv 434 (467)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998863 37999999999998875 9999999999999
Q ss_pred EecChhhHhc
Q 044927 435 EYDLPSKLME 444 (467)
Q Consensus 435 ~~g~~~~l~~ 444 (467)
+.|+++++..
T Consensus 237 ~~g~~~~~~~ 246 (529)
T PRK15134 237 EQNRAATLFS 246 (529)
T ss_pred EeCCHHHHhh
Confidence 9999999865
No 289
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.6e-43 Score=373.14 Aligned_cols=214 Identities=26% Similarity=0.443 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCC---------CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 044927 220 RIELEDLKVRYRP---------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 290 (467)
Q Consensus 220 ~i~~~~vs~~y~~---------~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~ 290 (467)
.++++|++++|+. +...+|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 5899999999952 12458999999999999999999999999999999999995 8999999999987665
Q ss_pred HHH---HhcccEEEcCCC--cccc-ccHHHhcCcCC-----CCC----HHHHHHHHHHcChH-HHHHhCCCcccccccCC
Q 044927 291 LKD---LRTKLSIIPQEP--TLFR-GSVRTNLDPLG-----MYS----DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDE 354 (467)
Q Consensus 291 ~~~---~r~~i~~v~Q~~--~lf~-~tv~enl~~~~-----~~~----~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~ 354 (467)
... +|++++|+||++ .+|+ .|+.||+.+.. ..+ ++++.++++..++. +..++ .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-----------Y 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence 433 467899999998 3665 49999996321 011 12344556666553 23333 3
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYG 431 (467)
Q Consensus 355 g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G 431 (467)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. |||+++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 47899999999999999999999999999999999999999999999864 37899999999998875 9999999999
Q ss_pred EEEEecChhhHhcc
Q 044927 432 ELVEYDLPSKLMET 445 (467)
Q Consensus 432 ~iv~~g~~~~l~~~ 445 (467)
+|++.|+++++++.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999998753
No 290
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.8e-43 Score=305.43 Aligned_cols=206 Identities=27% Similarity=0.372 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 044927 220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~ 294 (467)
.|+++++++.-+.. .-.+|++++|.|++||.+|||||||||||||+-+++|+-+|++|+|++.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888877543 235899999999999999999999999999999999999999999999999999987653 3
Q ss_pred h-cccEEEcCCCccc-cccHHHhcCc-C---CC-C--CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 295 R-TKLSIIPQEPTLF-RGSVRTNLDP-L---GM-Y--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 295 r-~~i~~v~Q~~~lf-~~tv~enl~~-~---~~-~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
| +++|+|+|..+|. +.|-.||+.. . ++ . ......+.++++|+.+-+.+.| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 6799999999876 4599999852 1 21 1 1223455677777776666666 8899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEe
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEY 436 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~ 436 (467)
|+||||+...|++|+-||||-+||..|-.+|.+.+-.+. .|.|.++|||++.....|||++-|.+|+|+++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999987643 48999999999999999999999999999864
No 291
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-42 Score=328.43 Aligned_cols=195 Identities=23% Similarity=0.273 Sum_probs=164.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999964 3499999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEcCCCccccc-cHHHhcCcC----CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 300 IIPQEPTLFRG-SVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
|++|++.+|.. |++||+.+. ....++.+.+.++..++.+..+ .....||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYED-----------TLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhcc-----------CChhhCCHHHHHHHHHHHHHhc
Confidence 99999988876 999998532 1112233445556555543322 2346899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeC
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSY 430 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~ 430 (467)
+|+++||||||++||+.+.+.+.+.+++. .+++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999875 457999999999998875 999999874
No 292
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-42 Score=369.10 Aligned_cols=210 Identities=27% Similarity=0.380 Sum_probs=173.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHH-Hhcc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRTK 297 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~-~r~~ 297 (467)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999963 3599999999999999999999999999999999999987 7999999999998776544 4567
Q ss_pred cEEEcCCCccccc-cHHHhcCcCCC-------CCHH----HHHHHHHHcChHHHHHhCCCcccccc-cCCCCCCChhHHH
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPLGM-------YSDN----EIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQ 364 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~~~-------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v-~~~g~~LSgGq~Q 364 (467)
++||||++.+|.. |++||+.+... ...+ ++.++++..++ +... .....+|||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgG~~q 148 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL-----------DADNVTRPVGDYGGGQQQ 148 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccCchhhCCHHHHH
Confidence 9999999988765 99999964211 1111 22233333332 2111 1234689999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
|++|||||+.+|++|||||||++||+.+...+.+.|+++ .+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999999885 347899999999999875 999999999999999988765
Q ss_pred h
Q 044927 443 M 443 (467)
Q Consensus 443 ~ 443 (467)
.
T Consensus 229 ~ 229 (500)
T TIGR02633 229 S 229 (500)
T ss_pred C
Confidence 3
No 293
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=376.19 Aligned_cols=217 Identities=22% Similarity=0.344 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC----------
Q 044927 220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC---------- 287 (467)
Q Consensus 220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~---------- 287 (467)
.|+++|++++|+.. ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 235999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cccEEEcCCC--cccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCccccccc
Q 044927 288 SMGLK---DLR-TKLSIIPQEP--TLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVS 352 (467)
Q Consensus 288 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~ 352 (467)
+.+.. .+| +.||||+|+| .+++ .||.||+.+. ...+. +++.++++.+++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22222 233 4799999998 5665 5999999632 11222 234455666665310 11223
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEe
Q 044927 353 DEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLS 429 (467)
Q Consensus 353 ~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~ 429 (467)
....+||||||||++|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 3447899999999999999999999999999999999999999999999864 3 8999999999998865 99999999
Q ss_pred CCEEEEecChhhHhc
Q 044927 430 YGELVEYDLPSKLME 444 (467)
Q Consensus 430 ~G~iv~~g~~~~l~~ 444 (467)
+|+|++.|+++++..
T Consensus 244 ~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 244 QGEAVETGSVEQIFH 258 (623)
T ss_pred CCeecccCCHHHhhc
Confidence 999999999999875
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-42 Score=370.49 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCC---CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc-CEe---CCCCC--
Q 044927 220 RIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID-GLD---ICSMG-- 290 (467)
Q Consensus 220 ~i~~~~vs~~y~~---~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~-g~~---i~~~~-- 290 (467)
.++++|++++|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 22459999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcccEEEcCCCccccc-cHHHhcCcC-C-CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 291 -LKDLRTKLSIIPQEPTLFRG-SVRTNLDPL-G-MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 291 -~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~-~-~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
...+|++++|+||++.+|.. |+.||+.+. . .... +++.++++..++.+.- .+........+|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHHH
Confidence 22456789999999988864 999999531 1 1111 2334455555543200 0001233447899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. |||+++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998863 37999999999999875 999999999999999999
Q ss_pred hhHhc
Q 044927 440 SKLME 444 (467)
Q Consensus 440 ~~l~~ 444 (467)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88753
No 295
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-42 Score=324.54 Aligned_cols=194 Identities=27% Similarity=0.338 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ..+++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 3789999999964 358999999999999999999999999999999999999999999999998642 2 2788899
Q ss_pred EEcCCCccc-cccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 300 IIPQEPTLF-RGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 300 ~v~Q~~~lf-~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
|++|++.++ ..|+++|+.+.. ...++++.++++..++.+..+.. ...||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLP-----------FGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999988775 569999985421 12345577788888887644332 257999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEEEEeC
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
|+++||||||++||+.+...+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 458999999999999988 99988854
No 296
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.7e-42 Score=322.69 Aligned_cols=192 Identities=23% Similarity=0.332 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EcCCCcccc-ccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
++|++.+|+ .|+.+|+.+.. ...++++.++++..++.++.++. ..+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP-----------AAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCC-----------hhhcCHHHHHHHHHHHHHhcCC
Confidence 999998876 59999996421 11233567778888887665443 3679999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEEE
Q 044927 377 RILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~v 427 (467)
+++||||||++||+.+.+.+.+.|++. .++.|+|++||+...+ .|++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 999999999999999999999999885 4578999999998443 2466554
No 297
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=367.40 Aligned_cols=217 Identities=22% Similarity=0.345 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCC-CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCH-HHHhc
Q 044927 220 RIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGL-KDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~-~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p~~G~i~i~g~~i~~~~~-~~~r~ 296 (467)
.++++|+++.|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999952 12358999999999999999999999999999999999998 599999999999865543 34567
Q ss_pred ccEEEcCCC---cccc-ccHHHhcCcCC--CC------CHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHH
Q 044927 297 KLSIIPQEP---TLFR-GSVRTNLDPLG--MY------SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQR 363 (467)
Q Consensus 297 ~i~~v~Q~~---~lf~-~tv~enl~~~~--~~------~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~ 363 (467)
.++|+||++ .+|. .|+.||+.+.. .. +.++. ...+.+.++.+ |++ ........+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3554 59999996421 11 11111 11123334443 232 123445578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 441 (467)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++ .+|+|+|++||+++.+.. |||+++|++|+++..|++++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999999885 358999999999999875 99999999999999999887
Q ss_pred Hh
Q 044927 442 LM 443 (467)
Q Consensus 442 l~ 443 (467)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 63
No 298
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.2e-42 Score=400.22 Aligned_cols=215 Identities=24% Similarity=0.349 Sum_probs=186.4
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..|+++||++.|+++++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996434569999999999999999999999999999999999999999999999999864 456678899
Q ss_pred EEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
||+||++.+|+. |++||+.+.. ..+. +++.+.++..++.+..+ ....+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----------EEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999998865 9999996431 1221 23455666666554433 344789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||+.+|+++||||||+|||+.+++.+++.|++..+|+|+|++||+++.+.. ||||++|++|+++..|++++|.++
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999998779999999999999875 999999999999999999998753
No 299
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-42 Score=367.32 Aligned_cols=211 Identities=28% Similarity=0.468 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEc----------------
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILID---------------- 282 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~---------------- 282 (467)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 478999999963 35999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhcccEEEcCC-Ccccc-ccHHHhcCcC---CCCCH----HHHHHHHHHcCh
Q 044927 283 -------GLDIC-------SMG---LKDLRTKLSIIPQE-PTLFR-GSVRTNLDPL---GMYSD----NEIWEAMEKCQL 336 (467)
Q Consensus 283 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~tv~enl~~~---~~~~~----~~~~~~~~~~~l 336 (467)
|.++. ..+ ...+|+.++|+||+ +.+|+ .|++||+.+. ...+. +++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 12457789999998 56776 4999999631 11221 345556677776
Q ss_pred HHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEcc
Q 044927 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAH 414 (467)
Q Consensus 337 ~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH 414 (467)
.+..++. ..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||
T Consensus 159 ~~~~~~~-----------~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRITHI-----------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 6554443 37899999999999999999999999999999999999999999998863 3799999999
Q ss_pred ChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 415 RVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 415 ~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+++.+.. ||+|++|++|++++.|+++++..
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999875 99999999999999999988754
No 300
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-42 Score=325.41 Aligned_cols=185 Identities=28% Similarity=0.472 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeCCCC-------CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 044927 220 RIELEDLKVRYRPNT-------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~-------~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~ 292 (467)
.++++|+++.|+... ..+++||||+|++||++||||+|||||||+-++|+|+++|++|+|+++|.++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 489999999996432 25899999999999999999999999999999999999999999999999876654
Q ss_pred HHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
.....+++.+.++.+++.+ +..+.| .+||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 1122456888899998765 666776 6799999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|+.+|+++++|||+|+||...+.++.+.+.++. .+.|.++|||+++.+++ ||||.||..|+|+|.|+.+++++
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 999999999999999999999999999998864 38999999999999997 99999999999999999999987
No 301
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-43 Score=311.65 Aligned_cols=212 Identities=30% Similarity=0.446 Sum_probs=186.6
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++||+++|++ +.+++++|++|++|.+++++||||||||||+.+++|+.++++|+|+++|.++..++.+++.+++++
T Consensus 2 I~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 789999999964 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccc-cccHHHhcCcCC-CC-----CH---HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 301 IPQEPTLF-RGSVRTNLDPLG-MY-----SD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 301 v~Q~~~lf-~~tv~enl~~~~-~~-----~~---~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
+-|+.++- +-||+|-+.|++ .+ +. ..+.++++-.+|.+.-++. -.+||||||||.-+|.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhhe
Confidence 99998875 459999887643 22 22 2355667666666554443 2568999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
.++++.+.++||||.++||.+....+++.++++.. +||+++|-|+.+.+.. +|+|+-|++|+++.+|+|+|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999988643 8999999999999875 999999999999999999999864
No 302
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=330.64 Aligned_cols=209 Identities=22% Similarity=0.268 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCC------------------CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q 044927 220 RIELEDLKVRYRP------------------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281 (467)
Q Consensus 220 ~i~~~~vs~~y~~------------------~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i 281 (467)
+|+++||+++|.. ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5788888887743 1235899999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhcCcC---CCCCHHHHH----HHHHHcChHHHHHhCCCcccccccC
Q 044927 282 DGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPL---GMYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSD 353 (467)
Q Consensus 282 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~---~~~~~~~~~----~~~~~~~l~~~i~~l~~g~~t~v~~ 353 (467)
+|. +++++|++.+++ .|+++|+.+. ...+.++.. .+++..++.+. +..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcC
Confidence 984 456778776654 5999998532 122333332 23344444333 334
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927 354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYG 431 (467)
Q Consensus 354 ~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G 431 (467)
....|||||+||++||||++.+|++|||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 457899999999999999999999999999999999999999999998753 48999999999999875 9999999999
Q ss_pred EEEEecChhhHhccCchHHHH
Q 044927 432 ELVEYDLPSKLMETNSAFSKL 452 (467)
Q Consensus 432 ~iv~~g~~~~l~~~~~~~~~l 452 (467)
++++.|+++++.+....|.+.
T Consensus 220 ~i~~~g~~~~~~~~~~~~~~~ 240 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFLND 240 (264)
T ss_pred EEEEeCCHHHHHHHhHHHHHH
Confidence 999999999998754444433
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=331.79 Aligned_cols=216 Identities=30% Similarity=0.504 Sum_probs=184.8
Q ss_pred cccEEEEeEEEEeCCC---------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 044927 218 HGRIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 288 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~---------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~ 288 (467)
+..++.+||...|+-. ...+++++||++++||.+||||+||||||||-.+|+|+.++. |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 3468999999999532 124799999999999999999999999999999999999876 999999999998
Q ss_pred CCHHH---HhcccEEEcCCCc--c-ccccHHHhcCc----CC-CCC----HHHHHHHHHHcChHHH-HHhCCCccccccc
Q 044927 289 MGLKD---LRTKLSIIPQEPT--L-FRGSVRTNLDP----LG-MYS----DNEIWEAMEKCQLKAT-ISRLPMLLDSSVS 352 (467)
Q Consensus 289 ~~~~~---~r~~i~~v~Q~~~--l-f~~tv~enl~~----~~-~~~----~~~~~~~~~~~~l~~~-i~~l~~g~~t~v~ 352 (467)
++.++ +|+++-+|||||+ | ...||.+-|.- .. ..+ ++++.++++.+|++.. ..+.|
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-------- 424 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP-------- 424 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC--------
Confidence 87654 6899999999997 2 34587776631 11 222 4567788999998754 34555
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEe
Q 044927 353 DEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLS 429 (467)
Q Consensus 353 ~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~ 429 (467)
..+|||||||||||||++-+|++++||||||+||...+.++.+.++++. .+-+-++||||+..++. ||+|+||+
T Consensus 425 ---hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 425 ---HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred ---cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 6789999999999999999999999999999999999999999998863 47899999999999986 99999999
Q ss_pred CCEEEEecChhhHhcc
Q 044927 430 YGELVEYDLPSKLMET 445 (467)
Q Consensus 430 ~G~iv~~g~~~~l~~~ 445 (467)
+|+|||+|+.+++++.
T Consensus 502 ~GkiVE~G~~~~if~~ 517 (534)
T COG4172 502 DGKIVEQGPTEAVFAN 517 (534)
T ss_pred CCEEeeeCCHHHHhcC
Confidence 9999999999999974
No 304
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.1e-42 Score=325.13 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCC----C-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc--CE--eCCCCCH
Q 044927 221 IELEDLKVRYRP----N-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID--GL--DICSMGL 291 (467)
Q Consensus 221 i~~~~vs~~y~~----~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~--g~--~i~~~~~ 291 (467)
++++|++++|+. + ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2358999999999999999999999999999999999999999999998 42 5555554
Q ss_pred HH---H-hcccEEEcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCC
Q 044927 292 KD---L-RTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359 (467)
Q Consensus 292 ~~---~-r~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS 359 (467)
.. + ++.++|+||++.+|.. |++||+.+. .... .+++.++++..++.+.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 43 2 4579999999988765 999998531 1122 12334445555543322 122457899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEE
Q 044927 360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVL 428 (467)
Q Consensus 360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl 428 (467)
||||||++|||||+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .|||++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 4789999999999886 59999876
No 305
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-42 Score=365.11 Aligned_cols=211 Identities=22% Similarity=0.341 Sum_probs=170.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i 298 (467)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999999762 28999999999999999999999999999999999999999999999998866543 3567789
Q ss_pred EEEcCCC---ccccc-cHHHhcCcCCCC------------CHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChh
Q 044927 299 SIIPQEP---TLFRG-SVRTNLDPLGMY------------SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVG 361 (467)
Q Consensus 299 ~~v~Q~~---~lf~~-tv~enl~~~~~~------------~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgG 361 (467)
+|+||++ .+|+. |++||+.+.... ...+. ...+.+.++.+ |+. ........+||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGG 413 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChH
Confidence 9999984 46654 999998642110 11110 01122333333 232 2234455789999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++ .+|+|+|++||+++.+.. |||+++|++|++++.++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999999999885 358999999999998765 999999999999998876
Q ss_pred hh
Q 044927 440 SK 441 (467)
Q Consensus 440 ~~ 441 (467)
.+
T Consensus 494 ~~ 495 (510)
T PRK09700 494 RD 495 (510)
T ss_pred cc
Confidence 44
No 306
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2e-41 Score=368.65 Aligned_cols=213 Identities=25% Similarity=0.380 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH---
Q 044927 220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL--- 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~--- 294 (467)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2458999999999999999999999999999999999999999999999999998876653
Q ss_pred -hcccEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 295 -RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 295 -r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
|+.++|+||++.+|+. |+.||+.+.. ... +++..+.++.+++.+..+. ...+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-----------~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-----------QPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-----------CcccCCHHHHHH
Confidence 5789999999999975 9999996321 111 1233445555555554444 347899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
++|||||+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.++.|||+++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998864 589999999999998889999999999999999999875
No 307
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-42 Score=297.33 Aligned_cols=212 Identities=28% Similarity=0.412 Sum_probs=184.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe--CCCCC----HHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--ICSMG----LKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~--i~~~~----~~~ 293 (467)
+|+++|++|.|+.. .+|.||+|+.+.||.+.+.||||+|||||++.|.=+.-|.+|+..|.|.. .++.+ ..+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 48899999999754 38999999999999999999999999999999999999999999998763 33332 346
Q ss_pred HhcccEEEcCCCccccc-cHHHhcC--cCC--CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 294 LRTKLSIIPQEPTLFRG-SVRTNLD--PLG--MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~-tv~enl~--~~~--~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
+|+.+|+|+|+..|++- ||.||+. +.. ..+++ +..+.++...+.++.+++| -.|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 89999999999999875 9999984 211 12332 3456778888889989988 578999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
|++|||||+.+|++|++||||++|||+-...+.+.|+++.. |.|-+++||..+..+. |.||+.|++|+|+|.|+++-.
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999999765 8999999999999886 999999999999999998876
Q ss_pred hc
Q 044927 443 ME 444 (467)
Q Consensus 443 ~~ 444 (467)
-.
T Consensus 229 t~ 230 (242)
T COG4161 229 TE 230 (242)
T ss_pred cC
Confidence 54
No 308
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=346.10 Aligned_cols=211 Identities=26% Similarity=0.366 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i 298 (467)
-++++|++++|++- ++|+|+||++.+||++|++|.||||||||+|+|+|.|+|++|+|.+||++..-.++.+- ...|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 58999999999753 49999999999999999999999999999999999999999999999999987777654 5569
Q ss_pred EEEcCCCccccc-cHHHhcCcCCC-------CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
+.|+||..|++. ||.|||-++.. .+..+..+.++ ..+.++... ........+||.||||.|+|||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~--~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLD--IDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCC--CChhhhhhhCCHHHHHHHHHHH
Confidence 999999999865 99999953322 22233322211 222322111 1123334679999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
|+..+++++|||||||+|+....+.+.+.+++++ +|.++|+||||++++.. ||||.||.||+.+..++.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999865 69999999999999876 999999999999988873
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-41 Score=395.40 Aligned_cols=215 Identities=18% Similarity=0.241 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..|+++|++++|++..+.+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|.++.. +..+.|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3699999999997533469999999999999999999999999999999999999999999999999865 345678899
Q ss_pred EEEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
||+||++.++. .|++||+.+.. ..+.+ .+.+.++.+++.+..++.+ ..||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999998886 49999996421 12222 3445677777766655443 679999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||+.+|++++|||||+||||.+++.+++.|++. .+|+|+|++||+++.++. ||||++|++|+++..|+++++.++
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999999985 458999999999999886 999999999999999999999653
No 310
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=5.4e-42 Score=318.49 Aligned_cols=173 Identities=29% Similarity=0.441 Sum_probs=146.1
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcccEEEcCCC--ccccc
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKLSIIPQEP--TLFRG 310 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~--~lf~~ 310 (467)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|+||++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 358999999999999999999999999999999999999999999999998852 22345678899999998 46778
Q ss_pred cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeC
Q 044927 311 SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383 (467)
Q Consensus 311 tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDE 383 (467)
|++||+.+.. ..+. +++.++++..++.+..++.| .+||||||||++|||||+++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999996421 1222 23456667777766555443 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH
Q 044927 384 ATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT 418 (467)
Q Consensus 384 pts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~ 418 (467)
||++||+.+++.+.+.|++.. +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998864 47899999999864
No 311
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=9.7e-42 Score=324.77 Aligned_cols=186 Identities=24% Similarity=0.391 Sum_probs=156.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcc---ccccHHHhcCcC
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL---FRGSVRTNLDPL 319 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---f~~tv~enl~~~ 319 (467)
|++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+++++|+||++.+ |+.|+.+|+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 346789999999876 356999998532
Q ss_pred C--------CC---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCC
Q 044927 320 G--------MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388 (467)
Q Consensus 320 ~--------~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~L 388 (467)
. .. .++++.++++..++.++.+. ...+||||||||++|||||+++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-----------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 01 12345566676666544433 33679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 389 DSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 389 D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
|+.++..+.+.|++.. +++|+|++||+++.+.. ||+++++ +|++++.|+++++.+.
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999999864 48899999999998765 9999999 7999999999998653
No 312
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.4e-41 Score=360.77 Aligned_cols=216 Identities=22% Similarity=0.326 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCH-HHHhc
Q 044927 220 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGL-KDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~~~~-~~~r~ 296 (467)
.++++|++++|+.+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999421 23489999999999999999999999999999999999996 89999999999865443 45678
Q ss_pred ccEEEcCCC---cccc-ccHHHhcCcCC--CC------CHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhHH
Q 044927 297 KLSIIPQEP---TLFR-GSVRTNLDPLG--MY------SDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQR 363 (467)
Q Consensus 297 ~i~~v~Q~~---~lf~-~tv~enl~~~~--~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq~ 363 (467)
+++|+||++ .+|+ .|+++|+.+.. .. ...+. ...+.++++.+ ++.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 3665 59999996421 00 11110 11122333333 2221 23344578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 441 (467)
||++|||||+.+|++|||||||++||+.+...+++.++++. .+.|+|++||+++.+.. |||+++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998853 48999999999998875 99999999999998876554
Q ss_pred H
Q 044927 442 L 442 (467)
Q Consensus 442 l 442 (467)
+
T Consensus 490 ~ 490 (500)
T TIGR02633 490 L 490 (500)
T ss_pred C
Confidence 3
No 313
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.2e-42 Score=314.93 Aligned_cols=214 Identities=23% Similarity=0.408 Sum_probs=183.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.+++++|+++|++ +.+++|+||++++|++.|++|||||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 4899999999964 459999999999999999999999999999999999999999999999998863 4577899
Q ss_pred EEcCCCccccc-cHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
|+|.+--|++. ||.|-+.+++ ..+..++..- +..|++++. +-....++..+||.|.+|+|-+--|++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999865 9999997643 2344444332 345666653 22223455678999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|+++|||||+|||||.+.+.+.+.+.+.+ +|.|||++||+++.++. ||++++|++|+.|-+|+.+++.+..
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999998864 59999999999999986 9999999999999999999987643
No 314
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.6e-41 Score=321.98 Aligned_cols=193 Identities=26% Similarity=0.295 Sum_probs=155.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 778899999964 4599999999999999999999999999999999999999999999999876321 11111
Q ss_pred EcCCCccccccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 301 IPQEPTLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
..+..|++||+.+.. ..+.+ ++.++++..++.+..+ ....+||||||||++||||++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-----------LPVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 123469999986321 11222 2334444444443332 334679999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
++|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998863 46899999999998865 9999999999998765
No 315
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-41 Score=345.52 Aligned_cols=206 Identities=23% Similarity=0.308 Sum_probs=169.3
Q ss_pred cEEEEeEEEEeCCCC-CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 220 RIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~-~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
.++++|++|.|++.. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997532 3589999999999999999999999999999999999999999999999751
Q ss_pred EEEcCCCcccc-ccHHHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFR-GSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~-~tv~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
++++.+.+++ .|++||+.+.. ..+.++ +.++++.+++.+++++. ...||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~-----------~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP-----------VKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------cccCCHHHHHHHHHHH
Confidence 1222333433 49999986421 223322 33456666666555443 4789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccCch
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNSA 448 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~~ 448 (467)
||+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++......
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998864 47899999999999875 999999999999999999998764333
Q ss_pred H
Q 044927 449 F 449 (467)
Q Consensus 449 ~ 449 (467)
|
T Consensus 237 ~ 237 (549)
T PRK13545 237 F 237 (549)
T ss_pred H
Confidence 3
No 316
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.2e-40 Score=361.33 Aligned_cols=198 Identities=24% Similarity=0.323 Sum_probs=166.7
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--ccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-cc
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GS 311 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~--~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 311 (467)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. ...++++|||+|++.+++ .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999985 899999999874 235667999999999986 49
Q ss_pred HHHhcCcCC------CCCHHH----HHHHHHHcChHHHHHhCCCcccccccC-CCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 312 VRTNLDPLG------MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSD-EGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 312 v~enl~~~~------~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~-~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
++||+.+.. ..++++ +.+.++..++. +..||.+|+ ....||||||||++|||||+.+|++|+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 999996421 122322 23334444332 335777765 467899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH-H-hhcCEEEEEeCCEEEEecChhhHh
Q 044927 381 LDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT-I-TDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|||||+|||+.++..+.+.|+++. +|+|+|+++|+++. + +.||++++|++|++++.|+++++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 999999999999999999999864 58999999999984 4 459999999999999999999885
No 317
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=302.39 Aligned_cols=205 Identities=23% Similarity=0.310 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.+.+++++.+|++....+|+|+|++|.+||.+.++||||||||||+|+++|+.+|+.|+|.+||.+|..-.. .-|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 367789999997665669999999999999999999999999999999999999999999999999876433 358
Q ss_pred EEcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
+|+|++-|++ .|+.||+.++- ...+ +...+.+..+++.++-++. ..+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----------i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY-----------IWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc-----------eEeecchHHHHHHHHHH
Confidence 9999999886 59999997642 1222 2234456667776655443 37899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChh
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPS 440 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~ 440 (467)
|..+|++|+||||+++||.-|++.+++.+-+.. .|+.+++|||+++++-. ++|++||+- |+|++.=+++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999998743 48999999999998765 999999984 7999865543
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.7e-41 Score=313.54 Aligned_cols=188 Identities=18% Similarity=0.333 Sum_probs=158.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++ +.++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999953 3345 599999999999999999999999999999999999999999999876532 346999
Q ss_pred EcCCCcc-ccccHHHhcCcCCC--CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 301 IPQEPTL-FRGSVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 301 v~Q~~~l-f~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
++|++.+ |..|++||+.+... ..++++.++++.+++.+..++ .+.+||||||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 56799999964221 134456667777777655443 347899999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEE
Q 044927 378 ILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFM 426 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~ 426 (467)
++||||||++||+.+++.+.+.+++. .+++|+|++||+++.++.||-+.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999753 45899999999999999988763
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=357.87 Aligned_cols=210 Identities=21% Similarity=0.351 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i 298 (467)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 589999984 269999999999999999999999999999999999999999999999998766543 457789
Q ss_pred EEEcCCC---cccc-ccHHHhcCcCCC---------CCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 044927 299 SIIPQEP---TLFR-GSVRTNLDPLGM---------YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ 364 (467)
Q Consensus 299 ~~v~Q~~---~lf~-~tv~enl~~~~~---------~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~Q 364 (467)
||+||++ .+|. .|+.||+.+... ....+.. ..+.+++..+ |+. ........+|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 3554 599999964210 1111110 1122333333 232 2344556789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|+++..|+++++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999999864 48899999999998875 999999999999999998875
Q ss_pred h
Q 044927 443 M 443 (467)
Q Consensus 443 ~ 443 (467)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 3
No 320
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-41 Score=356.87 Aligned_cols=211 Identities=23% Similarity=0.318 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i 298 (467)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. ...++++
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 5899999832 38999999999999999999999999999999999999999999999998865443 3456789
Q ss_pred EEEcCCCc---ccc-ccHHHhcCcCCC---------CCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 044927 299 SIIPQEPT---LFR-GSVRTNLDPLGM---------YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ 364 (467)
Q Consensus 299 ~~v~Q~~~---lf~-~tv~enl~~~~~---------~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~Q 364 (467)
+|+||++. +|. .|+.||+.+... ....+.. ....+++..+ |++ ........+|||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSL--NIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhc--CcccCCccCccccCCHHHHH
Confidence 99999973 554 699999864211 0111100 1122333333 231 2234445789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|++||+++.+.. ||++++|++|++++.|++++.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998864 48999999999999875 999999999999999998876
Q ss_pred h
Q 044927 443 M 443 (467)
Q Consensus 443 ~ 443 (467)
.
T Consensus 484 ~ 484 (501)
T PRK11288 484 T 484 (501)
T ss_pred C
Confidence 4
No 321
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-41 Score=316.29 Aligned_cols=195 Identities=23% Similarity=0.333 Sum_probs=175.4
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcccEEEcCCCccccc-cHHH
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSIIPQEPTLFRG-SVRT 314 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~i~~v~Q~~~lf~~-tv~e 314 (467)
+++|+.+...++||-|+||||||||+|+|+|+..|++|+|.+||.-+.+.+ ...-+++|||||||..||+- ||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688888887899999999999999999999999999999999998775442 33447889999999999975 9999
Q ss_pred hcCcCCCC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927 315 NLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393 (467)
Q Consensus 315 nl~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~ 393 (467)
|++++... ...+..+++...|+.+.+++.| .+|||||||||+|+|||+.+|++|++|||.|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99976543 4567888999999999999999 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 394 AILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 394 ~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
++++-.++++.+ +.-+++|||.++++.. ||+|++|++|++.+.|+.+++++.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 999999988754 5789999999998765 999999999999999999999864
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=354.58 Aligned_cols=201 Identities=17% Similarity=0.304 Sum_probs=170.9
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 36999999999964 34899999999999999999999999999999999999999999999872 479
Q ss_pred EEEcCCCc--ccc-ccHHHhcCcCC--CCCHHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 299 SIIPQEPT--LFR-GSVRTNLDPLG--MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 299 ~~v~Q~~~--lf~-~tv~enl~~~~--~~~~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
||+||++. ++. .|+++|+.... ...++++.+.++..++. +..++ ...+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKK-----------SVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcC-----------cccccCHHHHHHHHHHHHH
Confidence 99999974 443 59999985321 12344566677777662 33333 3478999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-EecChhhHhcc
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-EYDLPSKLMET 445 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~~~ 445 (467)
+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. |||+++|++|+++ ..|+++++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999886 4599999999999876 9999999999998 78998887654
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=353.43 Aligned_cols=207 Identities=21% Similarity=0.309 Sum_probs=164.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999963 35999999999999999999999999999999999999999999999872 36999
Q ss_pred EcCCCccccc-cHHHhcCcCCC-C-------------C---HH---HHHHHH----------HHcChHHHHHhCCCcccc
Q 044927 301 IPQEPTLFRG-SVRTNLDPLGM-Y-------------S---DN---EIWEAM----------EKCQLKATISRLPMLLDS 349 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~~-~-------------~---~~---~~~~~~----------~~~~l~~~i~~l~~g~~t 349 (467)
++|++.+|.. |++||+.+... . . .+ .+.+.. ....+.+.+..+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988765 99999853210 0 0 00 000000 001122233332 3322
Q ss_pred cc-cCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEE
Q 044927 350 SV-SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMV 427 (467)
Q Consensus 350 ~v-~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~v 427 (467)
.. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+ .+.|||+|||+++.+.. ||+|++
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 22 234578999999999999999999999999999999999999999999975 37899999999998875 999999
Q ss_pred EeCCEE-EEecChhhHhc
Q 044927 428 LSYGEL-VEYDLPSKLME 444 (467)
Q Consensus 428 l~~G~i-v~~g~~~~l~~ 444 (467)
|++|++ ++.|++++.++
T Consensus 225 l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 225 LDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EeCCEEEEecCCHHHHHH
Confidence 999999 47899988764
No 324
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2e-40 Score=333.08 Aligned_cols=210 Identities=24% Similarity=0.353 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i 298 (467)
.+++++++++|++ ..+++||||++++||+.||+|+||||||||+++|.|+|+|++|+|++||++++--++. ..|..|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5899999999973 4589999999999999999999999999999999999999999999999999876665 567789
Q ss_pred EEEcCCCccccc-cHHHhcCcCCCC------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
|+|.|++.|++. ||.|||..+... +..+..+- +.+..+++ |++-...+....||-|||||+.|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~-----i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-----IKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHH-----HHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999976 999999654321 22222111 12222222 33333344557799999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 438 (467)
|+++|++||||||||-|-|...+.+.+.++++. .|+|||+|||++.++.. |||+-||.+|+++..-+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999864 59999999999999886 99999999999876554
No 325
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.5e-40 Score=353.37 Aligned_cols=210 Identities=21% Similarity=0.359 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i 298 (467)
.++++|+++ .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 589999983 1599999999999999999999999999999999999999999999999988766554 45689
Q ss_pred EEEcCCC---cccc-ccHHHhcCcC-----CCC-CHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHHHHHH
Q 044927 299 SIIPQEP---TLFR-GSVRTNLDPL-----GMY-SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 299 ~~v~Q~~---~lf~-~tv~enl~~~-----~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~Qrl~ 367 (467)
+|+||++ .+|. .|+.+|+... ... ...+.+ ..+.+++..+ |+. .........||||||||++
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence 9999985 3665 4999998421 000 111111 1122334433 333 2344556789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. |||+++|++|+++..|+++++.
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999998863 48999999999999876 9999999999999999998775
No 326
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.8e-40 Score=332.86 Aligned_cols=180 Identities=27% Similarity=0.399 Sum_probs=154.2
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHHhcCcCC---CCCH----
Q 044927 253 VVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD---- 324 (467)
Q Consensus 253 ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~~---- 324 (467)
|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++|+||++.+|+. |++||+.+.. ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876654 36789999999999975 9999997431 1222
Q ss_pred HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC
Q 044927 325 NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF 404 (467)
Q Consensus 325 ~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 404 (467)
+++.++++..++.++.++.| .+||||||||++|||||+++|++|||||||++||+.++..+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 23455666666655554443 7899999999999999999999999999999999999999999998864
Q ss_pred --CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 405 --PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 405 --~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
.++|+|+|||+++.+.. ||||++|++|++++.|+++++...
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 37999999999998765 999999999999999999999764
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.7e-40 Score=352.17 Aligned_cols=208 Identities=25% Similarity=0.353 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.++|
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 59999999999622 4599999999999999999999999999999999999999999999975 14699
Q ss_pred EEcCCCccccc-cHHHhcCcCC-CC----------------CH----------HHHHHHHHHcC-------hHHHHHhCC
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG-MY----------------SD----------NEIWEAMEKCQ-------LKATISRLP 344 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~-~~----------------~~----------~~~~~~~~~~~-------l~~~i~~l~ 344 (467)
||||+|.+++. |+.||+.+.. .+ .. .++.+.++.++ +.+.++.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999998865 9999986421 00 00 01111111111 22233332
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cC
Q 044927 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SD 423 (467)
Q Consensus 345 ~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d 423 (467)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence 232 2345567899999999999999999999999999999999999999999998863 599999999999876 99
Q ss_pred EEEEEeCCEEE-EecChhhHhc
Q 044927 424 MFMVLSYGELV-EYDLPSKLME 444 (467)
Q Consensus 424 ~i~vl~~G~iv-~~g~~~~l~~ 444 (467)
+|++|++|+++ ..|+++++.+
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred eEEEEeCCEEEEecCCHHHHHH
Confidence 99999999986 7888887653
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.9e-40 Score=316.06 Aligned_cols=192 Identities=26% Similarity=0.325 Sum_probs=155.2
Q ss_pred EEeCCCCCceecceeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927 228 VRYRPNTPLVLKGITCTFK-----EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 302 (467)
Q Consensus 228 ~~y~~~~~~~L~~isl~i~-----~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 302 (467)
|+|++.. ..+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|+|
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 4576443 37888888886 79999999999999999999999999999999999984 599999
Q ss_pred CCCcc-ccccHHHhcCcCC-CC-C-HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 303 QEPTL-FRGSVRTNLDPLG-MY-S-DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 303 Q~~~l-f~~tv~enl~~~~-~~-~-~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
|++.. +..|++||+.... .. . .....++++..++.+..+ ....+||||||||++|||||+.+|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99874 6789999985321 11 1 222345566666554433 34478999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEE--EecChhhHh
Q 044927 379 LVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELV--EYDLPSKLM 443 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv--~~g~~~~l~ 443 (467)
+||||||++||+.++..+.+.|++.. .++|+|+|||+++.+.. ||++++|+++..+ ..++|.++.
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999999999999999999864 37999999999999885 9999999775443 455666654
No 329
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.6e-40 Score=380.01 Aligned_cols=211 Identities=23% Similarity=0.355 Sum_probs=178.7
Q ss_pred cEEEEeEEEEeC--CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHH
Q 044927 220 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDL 294 (467)
Q Consensus 220 ~i~~~~vs~~y~--~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~ 294 (467)
.++++||++.|+ ++.+.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 233569999999999999999999999999999999999998 78899999999884 257
Q ss_pred hcccEEEcCCCcc-ccccHHHhcCcCC------CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 295 RTKLSIIPQEPTL-FRGSVRTNLDPLG------MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 295 r~~i~~v~Q~~~l-f~~tv~enl~~~~------~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
|+.+|||+|++.+ +..||+||+.+.. ..+++ .+.++++..++.+ ..|+.+|+.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 8899999998765 4569999996421 12332 2445566555543 367888888889999999
Q ss_pred HHHHHHHHhcCCCC-EEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHH--hhcCEEEEEeCC-EEEEecC
Q 044927 364 QLFCLGRVLLKRNR-ILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTI--TDSDMFMVLSYG-ELVEYDL 438 (467)
Q Consensus 364 Qrl~iARal~~~p~-iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~--~~~d~i~vl~~G-~iv~~g~ 438 (467)
||++|||||+.+|+ +|+|||||||||+.+...+++.|++. .+|+|+|+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999986 4689999999999863 569999999997 9999998
Q ss_pred hhh
Q 044927 439 PSK 441 (467)
Q Consensus 439 ~~~ 441 (467)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.9e-40 Score=350.53 Aligned_cols=208 Identities=25% Similarity=0.329 Sum_probs=169.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..||
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48999999999622 3599999999999999999999999999999999999999999999975 24699
Q ss_pred EEcCCCccccc-cHHHhcCcCC-C-----------------CCH---------HHHHHHHHHcChH-------HHHHhCC
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLG-M-----------------YSD---------NEIWEAMEKCQLK-------ATISRLP 344 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~-~-----------------~~~---------~~~~~~~~~~~l~-------~~i~~l~ 344 (467)
||||+|.+++. |++||+.+.. . ..+ .++.++++.++.. +.+..+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 99999998864 9999996421 0 001 1233344444432 223332
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cC
Q 044927 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SD 423 (467)
Q Consensus 345 ~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d 423 (467)
|++. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||
T Consensus 151 -~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 151 -RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred -CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence 3321 34556789999999999999999999999999999999999999999999876 3599999999999886 99
Q ss_pred EEEEEeCCEEE-EecChhhHhc
Q 044927 424 MFMVLSYGELV-EYDLPSKLME 444 (467)
Q Consensus 424 ~i~vl~~G~iv-~~g~~~~l~~ 444 (467)
++++|++|+++ ..|++++..+
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eEEEEECCEEEEecCCHHHHHH
Confidence 99999999976 7799887654
No 331
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-40 Score=346.02 Aligned_cols=212 Identities=19% Similarity=0.324 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i 298 (467)
.|+++|+++.| +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 59999999975 2389999999999999999999999999999999999999999999999999876654 346779
Q ss_pred EEEcCCCc---ccc-ccHHHhc-----CcC-CC---CCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 044927 299 SIIPQEPT---LFR-GSVRTNL-----DPL-GM---YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ 364 (467)
Q Consensus 299 ~~v~Q~~~---lf~-~tv~enl-----~~~-~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~Q 364 (467)
+|+||++. +|. .|+.+|. ... .. .+..+..+ ...+.+..+ ++. ........+|||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence 99999863 555 4776663 211 00 11111111 122333333 221 1234556789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
|++||||++.+|+||||||||++||+.+...+++.++++. .++|+|++||+++.+.. |||+++|++|+++..++.++.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998853 58999999999998875 999999999999988876533
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.9e-39 Score=287.98 Aligned_cols=143 Identities=33% Similarity=0.526 Sum_probs=133.7
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4789999999643 5999999999999999999999999999999999999999999999984 47999
Q ss_pred EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
+|| ||+||+||++||||++++|+++|
T Consensus 68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 998 89999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 381 LDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
|||||++||+.+...+.+.+++. ++|+|++||+++.+.. ||++++|++|+
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999886 4799999999999865 89999999985
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.2e-40 Score=318.93 Aligned_cols=200 Identities=24% Similarity=0.346 Sum_probs=157.2
Q ss_pred EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHH
Q 044927 224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK 292 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~ 292 (467)
.||+++|+++ ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+....
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4788999643 358999994 999999999999999999999999999999999996 788887655333
Q ss_pred HHhc--ccEEEcCCCccccccHHHhcCcC-CCC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 293 DLRT--KLSIIPQEPTLFRGSVRTNLDPL-GMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 293 ~~r~--~i~~v~Q~~~lf~~tv~enl~~~-~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
..+. .+++++|.+.+++.++.+|+... ... .++.+.++++..++.+. ......+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 2332 47899888776654544444211 111 12345556666655443 334557899999999999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g 437 (467)
|||++.+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+|++|+ |++.+.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999998864 47999999999999885 99999995 6676544
No 334
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.2e-39 Score=308.16 Aligned_cols=185 Identities=20% Similarity=0.260 Sum_probs=149.3
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-EcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHH
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRT 314 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~e 314 (467)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777532 13356677765 9999
Q ss_pred hcCcCC---CCCHHHHHHHH-HHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927 315 NLDPLG---MYSDNEIWEAM-EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390 (467)
Q Consensus 315 nl~~~~---~~~~~~~~~~~-~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~ 390 (467)
|+.+.. ..+.++..+.+ +..++.+. +++ ....||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLEQC-------YTD----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChhHH-------hhc----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 996421 22333332222 22233222 222 3366999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927 391 ATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 391 ~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
.+++.+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+.++..+.
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 999999998866555689999999999986 5999999999999999998887643
No 335
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.8e-40 Score=355.00 Aligned_cols=202 Identities=22% Similarity=0.323 Sum_probs=169.6
Q ss_pred CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-
Q 044927 234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR- 309 (467)
Q Consensus 234 ~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 309 (467)
++++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.+|||+|++.+++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 456999999999999999999999999999999999999885 799999999875 3567889999999999886
Q ss_pred ccHHHhcCcCC------CCCHHHHHHHHHHcChHHHHHhC--CCcccccccCC--CCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 310 GSVRTNLDPLG------MYSDNEIWEAMEKCQLKATISRL--PMLLDSSVSDE--GENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 310 ~tv~enl~~~~------~~~~~~~~~~~~~~~l~~~i~~l--~~g~~t~v~~~--g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
.||+||+.+.. ..+.++. ...+++.++.+ ++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 49999996421 1122221 11123333332 34578999974 4789999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChh-H-HhhcCEEEEEeCCEEEEecChhhHh
Q 044927 380 VLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVP-T-ITDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+|||||+|||+.+...+.+.+++.. +|+|+|+++|+++ . .+.||++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 9999999999999999999999864 4899999999996 4 4569999999999999999999874
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.3e-40 Score=346.36 Aligned_cols=206 Identities=21% Similarity=0.281 Sum_probs=165.4
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCC-CCHHHHhc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS-MGLKDLRT 296 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~-~~~~~~r~ 296 (467)
..++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|+++|.++.. ......|+
T Consensus 259 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 259 PRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred ceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 35999999999964 3489999999999999999999999999999999999876 69999999987632 23345678
Q ss_pred ccEEEcCCCcccc---ccHHHhcCcC--C------CCCH---HHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChh
Q 044927 297 KLSIIPQEPTLFR---GSVRTNLDPL--G------MYSD---NEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVG 361 (467)
Q Consensus 297 ~i~~v~Q~~~lf~---~tv~enl~~~--~------~~~~---~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgG 361 (467)
+++|++|++.++. .++.+++... . .... +++.++++.+++.+ ..+ ....+||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-----------APFHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-----------CchhhCCHH
Confidence 8999999986542 3677665321 0 0111 23445556655543 322 334789999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CC-ceEEEEccChhHHhh--cCEEEEEeCCEEEEec
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PG-STVITVAHRVPTITD--SDMFMVLSYGELVEYD 437 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g 437 (467)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++ .|+|++||+++.+.. ||++++|++|+|++.-
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999999864 34 479999999999863 8999999999998754
No 337
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=295.26 Aligned_cols=207 Identities=23% Similarity=0.291 Sum_probs=172.0
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTK 297 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~ 297 (467)
.-|+++||++.|.+ +++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|++
T Consensus 30 ~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 45999999999954 459999999999999999999999999999999999999999999999999887776 899999
Q ss_pred cEEEcCCCc---cccccHHHhcC--cC------C-CCCHHH---HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 298 LSIIPQEPT---LFRGSVRTNLD--PL------G-MYSDNE---IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 298 i~~v~Q~~~---lf~~tv~enl~--~~------~-~~~~~~---~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
||+|+-+-. .-+.+++|-+. ++ . .+++++ ....++.+++.+..++ .-..||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-----------~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-----------PFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC-----------chhhcCHhH
Confidence 999976432 22346777663 11 1 233333 3345566666553333 347899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC---CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF---PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 438 (467)
|||+.|||||+.+|++||||||++|||...++.+.+.+.+.. .+.++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999999998863 26799999999999887 69999999999998874
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=341.92 Aligned_cols=199 Identities=21% Similarity=0.325 Sum_probs=164.8
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..|+++||++.|++ +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 35999999999964 35999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcCCC--cccc-ccHHHhcCc-CCCCCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 299 SIIPQEP--TLFR-GSVRTNLDP-LGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 299 ~~v~Q~~--~lf~-~tv~enl~~-~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
||++|++ .++. .|+.+++.. ......+++.+.++..++.. ... .....||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVT-----------EETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhc-----------CchhhCCHHHHHHHHHHHHHh
Confidence 9999985 3433 378887632 11222345556666665532 222 234789999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-EecChhhHh
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-EYDLPSKLM 443 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~ 443 (467)
.+|++|||||||++||+.+...+.+.|++. . .|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999887 3 499999999999875 9999999999997 788888763
No 339
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.4e-38 Score=337.57 Aligned_cols=201 Identities=20% Similarity=0.251 Sum_probs=164.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..++++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .++
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 36999999999964 3599999999999999999999999999999999999999999999954 2 159
Q ss_pred EEEcCCC-cccc-ccHHHhcCcCCC---C--CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 299 SIIPQEP-TLFR-GSVRTNLDPLGM---Y--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 299 ~~v~Q~~-~lf~-~tv~enl~~~~~---~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||+||++ .++. .|++||+.+... . .+.+...+++..++.+. ........||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5655 499999964211 1 12233344555554211 1223347899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeC-CEEE-EecChhhHhc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSY-GELV-EYDLPSKLME 444 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~-G~iv-~~g~~~~l~~ 444 (467)
++.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.+
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999999998863 489999999998876 999999996 7886 4788877654
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.1e-38 Score=336.92 Aligned_cols=200 Identities=21% Similarity=0.254 Sum_probs=162.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..++++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ + .+|
T Consensus 321 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 321 KVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred eEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 35999999999964 3599999999999999999999999999999999999999999999954 2 159
Q ss_pred EEEcCCCc-ccc-ccHHHhcCcCCC---CC--HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 299 SIIPQEPT-LFR-GSVRTNLDPLGM---YS--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 299 ~~v~Q~~~-lf~-~tv~enl~~~~~---~~--~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||+||++. ++. .|+.||+.+... .. +.+..++++..++.+. .......+||||||||++||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999973 554 599999964211 11 2223344444444211 1233447899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeC-CEEE-EecChhhHh
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSY-GELV-EYDLPSKLM 443 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~-G~iv-~~g~~~~l~ 443 (467)
|+.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||+|++|++ |+++ ..|+.++..
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999999999999999999999873 489999999999876 999999997 5876 557776654
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.6e-38 Score=289.04 Aligned_cols=151 Identities=27% Similarity=0.315 Sum_probs=133.9
Q ss_pred EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcC
Q 044927 224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 303 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 303 (467)
.|++++|++ ..++++. |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 588999964 3588884 9999999999999999999999999999999999999999953 788888
Q ss_pred CCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeC
Q 044927 304 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383 (467)
Q Consensus 304 ~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDE 383 (467)
++. ||||||||++||||++.+|++++|||
T Consensus 69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 653 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEe--cChh
Q 044927 384 ATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEY--DLPS 440 (467)
Q Consensus 384 pts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~--g~~~ 440 (467)
||++||+.+.+.+.+.+++.. + ++|+|++||+++.+.. ||++++|+++-.+.+ |.|.
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999999998863 3 4899999999999885 999999998766533 5544
No 342
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=286.96 Aligned_cols=217 Identities=25% Similarity=0.332 Sum_probs=177.8
Q ss_pred EEEeEEEEeCC---CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 222 ELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 222 ~~~~vs~~y~~---~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
.++|..+.+.+ ..+++|+++|++|++|+++-|+|.||||||||++.|+|-..|++|+|.|||.|+..++.......+
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 34455555532 234699999999999999999999999999999999999999999999999999999998888889
Q ss_pred EEEcCCCc--cc-cccHHHhcCcCC------CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 299 SIIPQEPT--LF-RGSVRTNLDPLG------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 299 ~~v~Q~~~--lf-~~tv~enl~~~~------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+-|+|||. .+ +.||.||+.... ..+...- .-.+....+.+..+|.|++..++++..-|||||||-++++
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln--~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN--ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhh--HHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 99999996 34 459999995311 1111100 0111223356778899999999999999999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChh
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~ 440 (467)
.|.++.|+||+|||-|++|||.+...+++.-.+. ..+-|.+||||+++.+- +-+|.++|++|+|+.+-+-+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 9999999999999999999999999998887764 23679999999998755 57999999999999765433
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.3e-38 Score=342.05 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=162.6
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..++++||++.|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 369999999999643 3589999999999999999999999999999999999999999999875 2469
Q ss_pred EEEcCCCccccccHHHhcC--c---CCCCCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 299 SIIPQEPTLFRGSVRTNLD--P---LGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 299 ~~v~Q~~~lf~~tv~enl~--~---~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
||++|++. ...++.+|.. + .....++++.++++..++.+ ...+ ....||||||||++||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~-----------~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcC-----------CccccCHHHHHHHHHHHHH
Confidence 99999863 2223444421 1 12234566777778777753 2222 3478999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-EecChhhH
Q 044927 373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-EYDLPSKL 442 (467)
Q Consensus 373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l 442 (467)
+.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||+++.+.. ||++++|++|+++ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999988775 3 499999999999886 9999999999998 66776654
No 344
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-38 Score=281.74 Aligned_cols=154 Identities=40% Similarity=0.620 Sum_probs=143.5
Q ss_pred EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 302 (467)
Q Consensus 223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 302 (467)
++|++|.|++. ++++++||++++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++.++|++
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999643 5999999999999999999999999999999999999999999999999988776777888999999
Q ss_pred CCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEee
Q 044927 303 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382 (467)
Q Consensus 303 Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLD 382 (467)
| |||||+||++||||++.+|++++||
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9 8999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 383 EATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 383 Epts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
|||++||+.+...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999988643 6899999999999987 69999999875
No 345
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=307.34 Aligned_cols=224 Identities=24% Similarity=0.387 Sum_probs=184.2
Q ss_pred cEEEEeEEEEeC--CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHH
Q 044927 220 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~--~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~~~ 292 (467)
-++++|+|+.|. +....+++++||+|++||++|+||+||||||-..+.++|+++- .+|+|.++|.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 489999999984 3345689999999999999999999999999999999999965 479999999999999888
Q ss_pred HHhc----ccEEEcCCCcc--cc-ccHHHh----cCcCCC----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927 293 DLRT----KLSIIPQEPTL--FR-GSVRTN----LDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 357 (467)
Q Consensus 293 ~~r~----~i~~v~Q~~~l--f~-~tv~en----l~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~ 357 (467)
++|+ +|+++||+|.- =+ -||..- |..... ...+++.+.++.+|+.+--.+ +.....+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r--------l~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR--------LDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh--------hhhCCcc
Confidence 7764 79999999953 22 255443 332222 234566778888887653322 2233478
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927 358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELV 434 (467)
Q Consensus 358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv 434 (467)
||||||||+.||.||+.+|++||-||||.+||...+.+|.+.|+++. .|..+++|||++..++. ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999999864 38999999999999987 9999999999999
Q ss_pred EecChhhHhcc-CchHHH
Q 044927 435 EYDLPSKLMET-NSAFSK 451 (467)
Q Consensus 435 ~~g~~~~l~~~-~~~~~~ 451 (467)
|.|+.+++++. ...|.+
T Consensus 238 E~~~t~~lF~~PqHpYTr 255 (534)
T COG4172 238 ETGTTETLFAAPQHPYTR 255 (534)
T ss_pred ecCcHHHHhhCCCChHHH
Confidence 99999999973 334543
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=282.15 Aligned_cols=213 Identities=23% Similarity=0.364 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC-EeCCCCCHHHH-hcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-LDICSMGLKDL-RTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g-~~i~~~~~~~~-r~~ 297 (467)
.++++|||++|++ ..+|+++||++.+||.-+|+|||||||||++..|.|-.+|++|+++++| .|+..++...+ |..
T Consensus 5 iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 5899999999965 3499999999999999999999999999999999999999999999999 89999987765 567
Q ss_pred cEEEcCCCccccc-cHHHhcCcC--CC----------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPL--GM----------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~--~~----------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG 361 (467)
||-=+|.|..|.. ||+||+... .+ .+ .+++.+.+...++.+..+.. ...||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----------A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----------AALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----------hhhhccc
Confidence 9999999999976 999999421 10 11 22466666666666554443 4679999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 440 (467)
|||++.|+..++++|++|+||||++|+-.+.....-+.++.+..++++++|.||+.+++. ||+|-||+.|.+..+|+.+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999777777788888888889999999999999986 9999999999999999999
Q ss_pred hHhcc
Q 044927 441 KLMET 445 (467)
Q Consensus 441 ~l~~~ 445 (467)
++.+.
T Consensus 232 ~v~~d 236 (249)
T COG4674 232 EVQND 236 (249)
T ss_pred HhhcC
Confidence 98754
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.4e-37 Score=338.16 Aligned_cols=198 Identities=20% Similarity=0.328 Sum_probs=161.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .||
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999964 35999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEcCCC-ccccc-cHHHhcCcCC-CC--C--HHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEP-TLFRG-SVRTNLDPLG-MY--S--DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~-~lf~~-tv~enl~~~~-~~--~--~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
|++|++ .+++. |+.||+.... .. . ..++.+.++..++. +.. ......||||||||++||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRA-----------MTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHH-----------hChhhhCCHHHHHHHHHHHH
Confidence 999986 46554 9999996421 11 1 23344445554442 222 22346899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe-CCEEEE-ecChhhHh
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS-YGELVE-YDLPSKLM 443 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~-~G~iv~-~g~~~~l~ 443 (467)
++.+|++|||||||++||+.+...+.+.+++. +.|+|+|||+.+.+.. ||++++++ +|+++. .|++++.+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999876 4599999999999875 99999998 899875 56666653
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.9e-38 Score=335.49 Aligned_cols=191 Identities=26% Similarity=0.307 Sum_probs=162.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++++|++ . .|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999953 2 5999999999999999999999999999999999999999999985 1599
Q ss_pred EEcCCCccc-cccHHHhcCcCC-CC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 300 IIPQEPTLF-RGSVRTNLDPLG-MY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 300 ~v~Q~~~lf-~~tv~enl~~~~-~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
|+||++.++ ..|++||+.+.. .. ......++++..++.+..++.+ .+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----------~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV-----------KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHhcCC
Confidence 999998764 569999996421 12 2234456777777765554443 789999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927 377 RILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 438 (467)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. |||+++|+ |++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999863 37899999999998875 99999996 58877776
No 349
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4e-38 Score=278.20 Aligned_cols=227 Identities=27% Similarity=0.405 Sum_probs=179.4
Q ss_pred EEEEeEEEEeCC-------CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH
Q 044927 221 IELEDLKVRYRP-------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD 293 (467)
Q Consensus 221 i~~~~vs~~y~~-------~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~ 293 (467)
++++|+|+.|.. +...+++.|||++++|+.+||+|.||||||||.|+|+|..+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 677888776632 2234899999999999999999999999999999999999999999999999987666566
Q ss_pred HhcccEEEcCCCcc-ccc--cHHHhcC-cC---CC----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 294 LRTKLSIIPQEPTL-FRG--SVRTNLD-PL---GM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 294 ~r~~i~~v~Q~~~l-f~~--tv~enl~-~~---~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
..++|-+++|||.- |+- .|-.-++ +. .+ ...+++.+.++.+|+. |+.-+ -....||.||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~------Pdhan----~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLL------PDHAN----YYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccC------ccccc----cchhhcCchh
Confidence 66789999999852 321 1222121 11 11 2235677778887764 32211 1236799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 439 (467)
|||||+||||.-+|+|+|-||+.++||...+.++.+...++ ..|..-|+|+.++..++. +|.|+||++|+++|.|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999999999999999888887664 348899999999999997 999999999999999999
Q ss_pred hhHhcc--CchHHHHHHHHH
Q 044927 440 SKLMET--NSAFSKLVAEYR 457 (467)
Q Consensus 440 ~~l~~~--~~~~~~l~~~~~ 457 (467)
.++++. ...-+++++.++
T Consensus 235 ~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 235 ADVLASPLHELTKRLIESHF 254 (267)
T ss_pred hhhhcCCccHHHHHHHHHHh
Confidence 999973 344556665543
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-37 Score=335.49 Aligned_cols=207 Identities=21% Similarity=0.300 Sum_probs=156.4
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
|+++||+++|++ +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 789999999964 359999999999999999999999999999999999999999999998841 3788
Q ss_pred EcCCCccccccHHHhcCcCC-CC---CH-----------HHH---HHHHHH-------cChHHHHHhCCCccc-ccccCC
Q 044927 301 IPQEPTLFRGSVRTNLDPLG-MY---SD-----------NEI---WEAMEK-------CQLKATISRLPMLLD-SSVSDE 354 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~-~~---~~-----------~~~---~~~~~~-------~~l~~~i~~l~~g~~-t~v~~~ 354 (467)
++|++..+..|+.+++.... .+ +. ..+ ....+. ..+...+..+ |+. ......
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~ 146 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP 146 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence 88865444345444331000 00 00 000 000000 0112223332 332 223445
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 355 g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+.+.+.. ||+|++|++|++
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 5789999999999999999999999999999999999999999999875 4699999999999876 999999999999
Q ss_pred E-EecChhhHhc
Q 044927 434 V-EYDLPSKLME 444 (467)
Q Consensus 434 v-~~g~~~~l~~ 444 (467)
+ ..|+++....
T Consensus 225 ~~~~g~~~~~~~ 236 (638)
T PRK10636 225 FEYTGNYSSFEV 236 (638)
T ss_pred EEecCCHHHHHH
Confidence 6 4788776653
No 351
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=301.78 Aligned_cols=414 Identities=18% Similarity=0.154 Sum_probs=275.1
Q ss_pred chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIV-AIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
.|+++|++..-..+......++.+.+.++....-++....|...+ ++.-+++...+.+...+...++...+.+..+++.
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 378899988877777777777776666655555555333333222 2222222223333333332222222233334444
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh---C
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV-------LL---P 150 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~ 150 (467)
-.-.+...+.++|.-|+.++.........++...+..........|+.+....+. .++.++.+ +. .
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~----Ylg~ilsy~vi~~p~Fs~h~y 341 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFD----YLGGILSYVVIAIPFFSGHVY 341 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhheeeEEeeeeeccccc
Confidence 4455667788999999998876655555554444433333333444444333222 22222211 11 1
Q ss_pred CCccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------------CCCCc-cC
Q 044927 151 GKHLPGFVGLSL----SYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPE-----------------PPAII-EE 208 (467)
Q Consensus 151 ~~~~~g~~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~-----------------~~~~~-~~ 208 (467)
+.+++..+...+ .+...+...+..+......+.+-..-..||.|+++.-.+ ..... ..
T Consensus 342 ~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~ 421 (659)
T KOG0060|consen 342 DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLP 421 (659)
T ss_pred CCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCC
Confidence 234443322211 122233334444444445555555667888887642110 00000 00
Q ss_pred CCCCCCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 044927 209 TKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 288 (467)
Q Consensus 209 ~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~ 288 (467)
......++....|++++|++.-|+++..+.+|+||+|+.|+.+.|.||||||||+|++.+.|+++..+|++.--...-.
T Consensus 422 ~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~- 500 (659)
T KOG0060|consen 422 PGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP- 500 (659)
T ss_pred CCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-
Confidence 0011223445679999999999875666788899999999999999999999999999999999999999976432110
Q ss_pred CCHHHHhcccEEEcCCCccccccHHHhcCcC--------CCCCHHHHHHHHHHcChHHHHHhCCCcccccc-cCCCCCCC
Q 044927 289 MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWS 359 (467)
Q Consensus 289 ~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-~~~g~~LS 359 (467)
+.+-|+||.|+.-.||+||-+.+. ...+++++.+.++.+++.+.+.+. .|+|+.+ -+-...||
T Consensus 501 -------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 501 -------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLS 572 (659)
T ss_pred -------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcC
Confidence 358899999999999999998532 125789999999999999988886 6888665 45668899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927 360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
+||+||+|+||.++++|++-||||.|||+|.+.|..+.+.+++. |.|.|.|+||-+.-+.-|.++-|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999999999885 8999999999999999999999986
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-36 Score=351.51 Aligned_cols=211 Identities=23% Similarity=0.296 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCC-----------CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeC
Q 044927 220 RIELEDLKVRYRP-----------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDI 286 (467)
Q Consensus 220 ~i~~~~vs~~y~~-----------~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i 286 (467)
.+.++||++..+. +...+|+|+|+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998742 123599999999999999999999999999999999999874 689999999875
Q ss_pred CCCCHHHHhcccEEEcCCCcccc-ccHHHhcCcC---C---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCC
Q 044927 287 CSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPL---G---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEG 355 (467)
Q Consensus 287 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~---~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g 355 (467)
. ...+++.+|||+|++.+++ .||+||+.+. . ..+.+ .+.++++..++.+. .++.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 3456778999999987775 5999999642 1 12222 24566777776543 345555443
Q ss_pred -CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH-H-hhcCEEEEEeC-
Q 044927 356 -ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT-I-TDSDMFMVLSY- 430 (467)
Q Consensus 356 -~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~- 430 (467)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++.. +|+|+|+++|+++. + +.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999864 58999999999984 3 56999999996
Q ss_pred CEEEEecChh
Q 044927 431 GELVEYDLPS 440 (467)
Q Consensus 431 G~iv~~g~~~ 440 (467)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9.9e-37 Score=278.42 Aligned_cols=155 Identities=22% Similarity=0.279 Sum_probs=127.8
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. .. ..++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH-----------
Confidence 45899999999999999999999999999999995 369999998752 11 12345788877
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC--CCEEEeeCCCCCCCHHH
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR--NRILVLDEATASIDSAT 392 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~--p~iliLDEpts~LD~~~ 392 (467)
.++++..++.+. ..+....+||||||||++||||++++ |+++||||||++||+.+
T Consensus 68 -------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 123333333211 24456688999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 393 DAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 393 ~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
.+.+.+.+++.. .++|+|++||+++.+..||++++|++|+
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 999999998864 5899999999999988899999997654
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.1e-36 Score=327.73 Aligned_cols=206 Identities=23% Similarity=0.303 Sum_probs=155.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 4899999999964 359999999999999999999999999999999999999999999998731 256
Q ss_pred EEcCCCcc-ccccHHHhcCcCC-------------------CCCHHHHHH------HHH-------HcChHHHHHhCCCc
Q 044927 300 IIPQEPTL-FRGSVRTNLDPLG-------------------MYSDNEIWE------AME-------KCQLKATISRLPML 346 (467)
Q Consensus 300 ~v~Q~~~l-f~~tv~enl~~~~-------------------~~~~~~~~~------~~~-------~~~l~~~i~~l~~g 346 (467)
+++|.+.. ..+++.+++.... ....+.+.. .+. ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 77775532 1234544431000 000000000 000 00122233332 2
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEE
Q 044927 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMF 425 (467)
Q Consensus 347 ~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i 425 (467)
+. .......||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeE
Confidence 32 134557899999999999999999999999999999999999999999998863 599999999999876 9999
Q ss_pred EEEeCCEEEE-ecChhhHhc
Q 044927 426 MVLSYGELVE-YDLPSKLME 444 (467)
Q Consensus 426 ~vl~~G~iv~-~g~~~~l~~ 444 (467)
++|++|+++. .|++++.+.
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 9999999984 588877654
No 355
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-36 Score=273.72 Aligned_cols=213 Identities=28% Similarity=0.351 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~-r~ 296 (467)
.++++|++.+-.+. +.+|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.++|+||.++++.+. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 48999999998643 3599999999999999999999999999999999996 48899999999999999998764 66
Q ss_pred ccEEEcCCCccccc-cHHHhcCcC--C--C------CCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHH
Q 044927 297 KLSIIPQEPTLFRG-SVRTNLDPL--G--M------YSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~-tv~enl~~~--~--~------~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
.|...+|.|.=++| ++.+-+... . . ...+++.++++..++++ ++++ .++ ..+|||||.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R-------~vN---~GFSGGEkK 151 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER-------YVN---EGFSGGEKK 151 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc-------ccC---CCcCcchHH
Confidence 79999999998888 888776421 1 1 11345667777777766 3322 222 468999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEecChhh
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g~~~~ 441 (467)
|..|+.+++.+|++.|||||-||||..+-+.+.+.+..++ +++++++|||.-..+.. .|++.||-+|+|+..|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998865 58999999999998887 499999999999999999 6
Q ss_pred Hhc
Q 044927 442 LME 444 (467)
Q Consensus 442 l~~ 444 (467)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 653
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.3e-37 Score=329.79 Aligned_cols=193 Identities=26% Similarity=0.347 Sum_probs=156.7
Q ss_pred EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHH
Q 044927 224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK 292 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~ 292 (467)
++++++|+++ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++...
T Consensus 77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 4589999753 34899999 8999999999999999999999999999999999997 899887644221
Q ss_pred --HHhcccE----EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 293 --DLRTKLS----IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 293 --~~r~~i~----~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
..+.+++ |++|.|.+|.+|++||+... ...+++.++++..++.+..++ ...+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~-----------~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV--DERGKLDEVVERLGLENILDR-----------DISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh--hHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 1112344 45556667788999998632 122455666777666544333 3468999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYG 431 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G 431 (467)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999986558999999999999876 9999999873
No 357
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-36 Score=257.51 Aligned_cols=194 Identities=23% Similarity=0.327 Sum_probs=164.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~ 296 (467)
.+.++||+.+.++. -.|-++||+|.+||++-+.||||||||||+.-+.|.+.++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 46789999887643 4799999999999999999999999999999999999884 79999999999877654 67
Q ss_pred ccEEEcCCCccccc-cHHHhcCcCC------CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 297 KLSIIPQEPTLFRG-SVRTNLDPLG------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~-tv~enl~~~~------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
++|+++||++||+. +|.+|+.+.- .........++++.++..+..+.| .+||||||-||++-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 89999999999976 9999996531 122344566888999998888887 67899999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH-H-CCCceEEEEccChhHHhhcCEEEEE
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIRE-E-FPGSTVITVAHRVPTITDSDMFMVL 428 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~-~~~~tvi~itH~l~~~~~~d~i~vl 428 (467)
|+|+..|+.++||||+|.||..-+..+.+..-. . ..|..+|+|||+...+..-.||+-|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999999988888777654 2 3488999999999988755555544
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.3e-36 Score=349.70 Aligned_cols=200 Identities=23% Similarity=0.206 Sum_probs=164.9
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC----CCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 310 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~----~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 310 (467)
+.+|+|+|+++++||+++|+||||||||||+|+|+|.. .|.+|+|.+||.++.+.. ...|+.++||+|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999876543 3457779999999887764
Q ss_pred -cHHHhcCcCC----------CCCHHHH-----HHHHHHcChHHHHHhCCCcccccccC-CCCCCChhHHHHHHHHHHhc
Q 044927 311 -SVRTNLDPLG----------MYSDNEI-----WEAMEKCQLKATISRLPMLLDSSVSD-EGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 311 -tv~enl~~~~----------~~~~~~~-----~~~~~~~~l~~~i~~l~~g~~t~v~~-~g~~LSgGq~Qrl~iARal~ 373 (467)
||+||+.+.. ..+.++. ..+++..++ .+-.+|.+|+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999996421 1122221 123344443 2335677764 45789999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccCh-hHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRV-PTIT-DSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~~-~~d~i~vl~~G~iv~~g~~~~l 442 (467)
.+|++++|||||+|||+.+...+.+.|+++. .|+|+|+++|++ +.+. .+|++++|++|+++..|+++++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 9999999999999999999999999999864 389999999997 4554 5999999999999999999887
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.3e-35 Score=274.11 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=155.7
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
.++|+||||++++||.+||||+||||||||+|+|+|.|+|++|+|.++|.--.-+.. ..|+- .+.|-+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~------pelTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFD------PELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCC------cccchHH
Confidence 358999999999999999999999999999999999999999999999952211110 12221 2358999
Q ss_pred hcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCC
Q 044927 315 NLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387 (467)
Q Consensus 315 nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~ 387 (467)
|+.+.+ ..+. +.+.+..+-+.|.+|++. | .+++|.||+-|+++|-|...+|+|||+||..+.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 996422 1233 344556666777777765 2 378899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 388 IDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 388 LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
-|+.-.++-.+.+.++ .+++|+|+|||+++.++. |||+++|++|+|...|+++++.+
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999888888888876 678999999999999986 99999999999999999999874
No 360
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-36 Score=280.30 Aligned_cols=207 Identities=24% Similarity=0.336 Sum_probs=157.2
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc-CCCccc-cccHH
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLF-RGSVR 313 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~tv~ 313 (467)
++++|+||+|++|++++++|||||||||++|+|.|+..|++|.|.++|.+-.+ +.+++-+++++|+ |...+. .-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 48999999999999999999999999999999999999999999999987554 2334444566654 333332 11233
Q ss_pred HhcCcC---CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927 314 TNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390 (467)
Q Consensus 314 enl~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~ 390 (467)
|.+... -+.++++..+-++ .+.+-+ +++..+......||-|||.|.-||.||+++|++|+|||||-+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 322110 1234443332211 111111 234444445688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccCchHH
Q 044927 391 ATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNSAFS 450 (467)
Q Consensus 391 ~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~~~~ 450 (467)
.++..+.+.+++.. .++||++.||.++.+.. ||||++++.|+++.+|+.++|.+.-+.++
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k 252 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYK 252 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCce
Confidence 99999999999853 48999999999998775 99999999999999999999876544443
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.1e-35 Score=319.98 Aligned_cols=220 Identities=20% Similarity=0.214 Sum_probs=160.9
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC---CCCccEEEEcCEeCCCC--CH--
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV---EPENGRILIDGLDICSM--GL-- 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~---~p~~G~i~i~g~~i~~~--~~-- 291 (467)
..|+++|++|+|++ ..+|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 35999999999964 34999999999999999999999999999999999864 57899998766543211 11
Q ss_pred ----------HHHhcccEEEcCCCccccccHHHhcCcC--CCCCH----HHHHHHHHHcCh----------HHHHHhCCC
Q 044927 292 ----------KDLRTKLSIIPQEPTLFRGSVRTNLDPL--GMYSD----NEIWEAMEKCQL----------KATISRLPM 345 (467)
Q Consensus 292 ----------~~~r~~i~~v~Q~~~lf~~tv~enl~~~--~~~~~----~~~~~~~~~~~l----------~~~i~~l~~ 345 (467)
..+++.+++++|++.+...+..+|.... ...+. +++.++++..++ ...+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 1124558899998765433333433110 01111 122222222211 1122222
Q ss_pred ccc-ccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cC
Q 044927 346 LLD-SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SD 423 (467)
Q Consensus 346 g~~-t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d 423 (467)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 222 1122334789999999999999999999999999999999999999999999886 6799999999999876 99
Q ss_pred EEEEEeCCEEE-EecChhhHhc
Q 044927 424 MFMVLSYGELV-EYDLPSKLME 444 (467)
Q Consensus 424 ~i~vl~~G~iv-~~g~~~~l~~ 444 (467)
+|++|++|+++ ..|++++...
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 6787776543
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=304.05 Aligned_cols=207 Identities=28% Similarity=0.379 Sum_probs=162.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|.++|++++|++ +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+- -+++
T Consensus 3 ~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 4899999999953 45999999999999999999999999999999999999999999998752 2699
Q ss_pred EEcCCCccccc-cHHHhcCcCCC-CC--HHHHHHH------------------HHH-------cChHHHHHhCCCccccc
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM-YS--DNEIWEA------------------MEK-------CQLKATISRLPMLLDSS 350 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~-~~--~~~~~~~------------------~~~-------~~l~~~i~~l~~g~~t~ 350 (467)
|++|++.+.+. ||.+.+..... .. ..+...+ .+. +.+...+..+ |+...
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~ 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence 99999999865 99988742210 00 0111111 000 1112222222 22222
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe
Q 044927 351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS 429 (467)
Q Consensus 351 v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~ 429 (467)
.....+||||||.|++|||||+.+|++|+|||||++||.++..-+.+.|.+. +| |+|+||||-+++.. |++|+-++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 3445789999999999999999999999999999999999999999999865 45 99999999999987 99999999
Q ss_pred CCEEE-EecChhhHhc
Q 044927 430 YGELV-EYDLPSKLME 444 (467)
Q Consensus 430 ~G~iv-~~g~~~~l~~ 444 (467)
.|++. ..|.++..++
T Consensus 225 ~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 225 RGKLTPYKGNYSSYLE 240 (530)
T ss_pred CCceeEecCCHHHHHH
Confidence 99885 5677776654
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.3e-35 Score=341.90 Aligned_cols=206 Identities=22% Similarity=0.263 Sum_probs=164.8
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-c
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-G 310 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 310 (467)
..+|+|+|+.+++||+++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 34899999999999999999999999999999999999998 999999999886543 2678999999987775 5
Q ss_pred cHHHhcCcCCC-------------CCHH----------HHHHHHHHc---C------hHHHHHhC--CCcccccccC-CC
Q 044927 311 SVRTNLDPLGM-------------YSDN----------EIWEAMEKC---Q------LKATISRL--PMLLDSSVSD-EG 355 (467)
Q Consensus 311 tv~enl~~~~~-------------~~~~----------~~~~~~~~~---~------l~~~i~~l--~~g~~t~v~~-~g 355 (467)
||+||+.+... .+.+ ++...++.. + .+..++.+ .+-.||.+|+ ..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999964210 0011 110011110 0 12233332 3335777765 45
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChh-HH-hhcCEEEEEeCC
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVP-TI-TDSDMFMVLSYG 431 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~-~~-~~~d~i~vl~~G 431 (467)
..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++.. .|+|+|+++|++. .+ ..+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 7899999999999999999999999999999999999999999999863 4899999999973 44 459999999999
Q ss_pred EEEEecChhhHh
Q 044927 432 ELVEYDLPSKLM 443 (467)
Q Consensus 432 ~iv~~g~~~~l~ 443 (467)
+++..|+++++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999998875
No 364
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-34 Score=251.88 Aligned_cols=226 Identities=24% Similarity=0.429 Sum_probs=174.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC-----EeCCCCCHHH-
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-----LDICSMGLKD- 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g-----~~i~~~~~~~- 293 (467)
-++++++|+.|++.. ..+|+||++.|||..||||+||||||||+++|++-+.|++|+|.+.- .++..++..+
T Consensus 6 LL~V~~lsk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 589999999997543 68999999999999999999999999999999999999999999865 3344444333
Q ss_pred ---HhcccEEEcCCCc--c-ccccHHHhcC----cCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 294 ---LRTKLSIIPQEPT--L-FRGSVRTNLD----PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 294 ---~r~~i~~v~Q~~~--l-f~~tv~enl~----~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
+|...|+|.|+|. | ..-|.--||- ..+.-..-+++.. ..+|+++.+-. .+++.+....+|||++
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~-----a~~WL~~VEI~-~~RiDD~PrtFSGGMq 157 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE-----AQDWLEEVEID-LDRIDDLPRTFSGGMQ 157 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHH-----HHHHHHhcccC-cccccCcccccchHHH
Confidence 3566899999984 2 1112233431 1110001112111 23455544322 2456677799999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 440 (467)
||+-|||-|+..|+++++||||-|||...+..+.+.++.+-. +-.++++||++..++. +||.+||++|+++|.|-.+
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 999999999999999999999999999999999999988543 7899999999999986 9999999999999999988
Q ss_pred hHhc-cCchHHHHH
Q 044927 441 KLME-TNSAFSKLV 453 (467)
Q Consensus 441 ~l~~-~~~~~~~l~ 453 (467)
.++. ....|.++.
T Consensus 238 rvLDDP~hPYTQLL 251 (258)
T COG4107 238 RVLDDPHHPYTQLL 251 (258)
T ss_pred ccccCCCCchHHHH
Confidence 8886 345566654
No 365
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-34 Score=309.38 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=180.1
Q ss_pred ccEEEEeEEEEeCCC---CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC---CccEEEEcCEeCCCCCHH
Q 044927 219 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLK 292 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~---~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p---~~G~i~i~g~~i~~~~~~ 292 (467)
..+.++|++..-++. .+.+|+|||.+++|||..||+||||||||||+++|+|-.++ .+|+|++||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 368899999988654 36799999999999999999999999999999999999975 68999999954 3567
Q ss_pred HHhcccEEEcCCCccccc-cHHHhcCcCC------CCCH----HHHHHHHHHcChHHHHHhCCCcccccccC-CCCCCCh
Q 044927 293 DLRTKLSIIPQEPTLFRG-SVRTNLDPLG------MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSD-EGENWSV 360 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~lf~~-tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~-~g~~LSg 360 (467)
.+++..|||.||..+++. ||+|++.+.. ..+. +.++++++..++.+. -||.+|. ..+.+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCcccc
Confidence 789999999999998865 9999995421 1222 334555555555432 3566653 3378999
Q ss_pred hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH--HhhcCEEEEEeCCEEEEec
Q 044927 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT--ITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~iv~~g 437 (467)
|||+|++||.-++.||+||+|||||||||..+...+.+.|+++. +|+|||++-|.++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999964 59999999999974 3459999999999999999
Q ss_pred ChhhHh
Q 044927 438 LPSKLM 443 (467)
Q Consensus 438 ~~~~l~ 443 (467)
+++++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 998775
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.6e-34 Score=253.65 Aligned_cols=136 Identities=42% Similarity=0.713 Sum_probs=122.4
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHHhc
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNL 316 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~enl 316 (467)
|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.+|++ |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999998888899999999999999877 69999
Q ss_pred CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC
Q 044927 317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386 (467)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts 386 (467)
..+++++++++.+++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456777777776644 34566777779999999999999999999999999999997
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=287.42 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=169.0
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
..-++++|++++|+++ +++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.-. -+
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 3468999999999755 56999999999999999999999999999999999999999999987541 26
Q ss_pred cEEEcCCC-cccc-ccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 298 LSIIPQEP-TLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 298 i~~v~Q~~-~lf~-~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+||.+|+. .++. .|+.|++.-.. ...+.+++..+...++...-..- ....||||||-|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~----------~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEK----------PVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhC----------chhhcCHhHHHHHHHHHHhcc
Confidence 99999987 3443 48999986322 33367788888887765443332 346799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEe-cChhhHhc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY-DLPSKLME 444 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~-g~~~~l~~ 444 (467)
+|.+|||||||++||.++...+.++|.+. .-|+|+||||-..+.. |++++.+++ ++... |++++..+
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999999999999999999886 3599999999999997 999999998 67655 66666543
No 368
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=250.84 Aligned_cols=186 Identities=24% Similarity=0.392 Sum_probs=157.1
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++.+|++...+. ..++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.++.... +..++..-|
T Consensus 3 L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 566777776643 35899999999999999999999999999999999999999999999999887653 335677888
Q ss_pred EcCCCcccc-ccHHHhcCcCC----CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 301 IPQEPTLFR-GSVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 301 v~Q~~~lf~-~tv~enl~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
+--.+-+-. .|+.||+.|.. ..+++.++++++.+++..+.+ +| ..+||-|||+|++|||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d-lp----------~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LP----------VGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc-cc----------hhhcchhHHHHHHHHHHHcCC
Confidence 887777754 59999998643 245688999999999876543 33 367999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHh
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTIT 420 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~ 420 (467)
+|++|||||+++||.+.+..+-..+... .+|-.||..||..-.+.
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 9999999999999999999999888774 56889999999876554
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.2e-32 Score=262.54 Aligned_cols=190 Identities=21% Similarity=0.242 Sum_probs=125.3
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHH-HHHhcCCCCCccEEEEcC-------EeC---CCCCHHHHhc-ccEEEc
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLI-SALFRLVEPENGRILIDG-------LDI---CSMGLKDLRT-KLSIIP 302 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll-~~l~gl~~p~~G~i~i~g-------~~i---~~~~~~~~r~-~i~~v~ 302 (467)
..+|+++||+|++||+++|+||||||||||+ ..+. .+|++.+.. ..+ ........+. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4589999999999999999999999999995 4442 134432210 000 0000111111 234444
Q ss_pred CCCccc-c--ccHH---HhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhHHHHHHHHHHhcC
Q 044927 303 QEPTLF-R--GSVR---TNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 303 Q~~~lf-~--~tv~---enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
|++... + .++. +...+.. ....+...+ . .+.+..+ |+.. .......+||||||||++|||||+.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE---R---LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH---H---HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 444311 1 1221 1111100 000000000 0 1223332 2322 2455668899999999999999999
Q ss_pred CC--CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCEEEEec
Q 044927 375 RN--RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGELVEYD 437 (467)
Q Consensus 375 ~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~iv~~g 437 (467)
+| +++||||||++||+.+...+.+.+++.. .+.|+|+|||+++.+..||++++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998853 589999999999998889999999 999999986
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=311.62 Aligned_cols=215 Identities=21% Similarity=0.341 Sum_probs=187.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-CHHHHhcc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTK 297 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~-~~~~~r~~ 297 (467)
..+..+|+++.|+.... +++++|+.|++||+.|+.|+|||||||+++++.|..+|++|++.++|.++..- +..+.+++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46889999999976544 89999999999999999999999999999999999999999999999998764 33458999
Q ss_pred cEEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+||+||+..++.. |.||.+.++. .... +.+.+.++..++.+..+.. .+.+|||+|+|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHHH
Confidence 9999999988865 9999996532 2222 2355667777776665542 368999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
-|++.+|++++|||||+|+||.+++.+++.+++..+ ++.+|++||.+++.+. |||+.+|.+|++..-|+++++.++
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999999765 5599999999999997 999999999999999999999754
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.98 E-value=2.7e-32 Score=254.48 Aligned_cols=164 Identities=21% Similarity=0.300 Sum_probs=131.7
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---------cEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---------GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 309 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~---------G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 309 (467)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.++|.++.. ...++++++|||+|..+.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCce
Confidence 6789999999 999999999999999999999987653 467777876543 223578999999998761
Q ss_pred ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc----CCCCEEEeeCCC
Q 044927 310 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILVLDEAT 385 (467)
Q Consensus 310 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~----~~p~iliLDEpt 385 (467)
+ ....+++.++++. +... ......||||||||++|||+++ .+|++++|||||
T Consensus 90 ~----------~~~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 S----------IISQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred e----------EEehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 1 0012344444444 1111 2334679999999999999986 567999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927 386 ASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 386 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
++||+.....+.+.|++..++.|+|++||+++.+..||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999998778999999999999888999999875
No 372
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-29 Score=255.04 Aligned_cols=411 Identities=15% Similarity=0.176 Sum_probs=271.8
Q ss_pred chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 044927 2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVL----IVAIPTVIVAKYIQGYYLSSARELMRMNGTTKA 77 (467)
Q Consensus 2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (467)
+++|+|+....+...+...++..-++.++.+...+.-.+-... .++..+..+...+.+.+.++.-++...+....+
T Consensus 221 ~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g 300 (728)
T KOG0064|consen 221 NSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKG 300 (728)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence 4689999999888888888887777766554443332221111 111222233334555555555566665666677
Q ss_pred cHHHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h
Q 044927 78 PIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--------L 149 (467)
Q Consensus 78 ~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 149 (467)
.+...-+-.+++-++|-.|+..+...++.++..+..............|+...-+++.--+....+.+++. .
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~ 380 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLA 380 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccC
Confidence 77777788899999999999999988888877777666555444555566554444332222211111110 0
Q ss_pred C-CCc---cHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCC-Cc
Q 044927 150 P-GKH---LPGF--VGLSLS---YALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPP-------------EPPA-II 206 (467)
Q Consensus 150 ~-~~~---~~g~--~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~-------------~~~~-~~ 206 (467)
. +.. ..+. .-.+.+ ........+.-+...+.++.+-..-..|+++.++.-. +... ..
T Consensus 381 s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~ 460 (728)
T KOG0064|consen 381 SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRT 460 (728)
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccC
Confidence 0 110 0111 111111 1222333444455556666666666667765442100 0000 00
Q ss_pred c----CCCCCCC---CCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927 207 E----ETKPPAS---WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279 (467)
Q Consensus 207 ~----~~~~~~~---~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i 279 (467)
. ...+.+. ......|.++||-.--|.+ ..++..++|+|++|-.+.|.||||||||+|++.|.|++|...|..
T Consensus 461 ~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~-~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L 539 (728)
T KOG0064|consen 461 IDESRNSNPLPTTDAIRNFNGIILENIPVITPAG-DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL 539 (728)
T ss_pred ccccccCCcCCccchhhcccceEEecCceeccCc-ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence 0 0000000 0012358899998877654 458999999999999999999999999999999999999988876
Q ss_pred EEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC--------CCCCHHHHHHHHHHcChHHHHHhCCCcccccc
Q 044927 280 LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351 (467)
Q Consensus 280 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 351 (467)
.+-- +.+|-|+||.|+.--||.||-+-+. ..++|.++...+..+.++..+++ ..|+|..
T Consensus 540 ~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da~- 606 (728)
T KOG0064|consen 540 SIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDAV- 606 (728)
T ss_pred ecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhhh-
Confidence 5422 3359999999998888999988431 23678899999999999876665 4555543
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL 428 (467)
Q Consensus 352 ~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl 428 (467)
.+--.-||||+|||+++||.++++|+.-+|||.||++.++.|..+.++.+.. |-+.|.||||++....-...+-.
T Consensus 607 ~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 607 RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 2333569999999999999999999999999999999999999999998875 78999999999988765554444
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.3e-31 Score=256.07 Aligned_cols=192 Identities=24% Similarity=0.306 Sum_probs=135.1
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-----c-CC----CCCcc-----------EEEEcCEeCCCCCHH---
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-----R-LV----EPENG-----------RILIDGLDICSMGLK--- 292 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-----g-l~----~p~~G-----------~i~i~g~~i~~~~~~--- 292 (467)
.|+|+|++|+.|..++|.|+||||||||++.++ + +. .|..+ -|.+|..++..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998652 1 11 13222 355555555332110
Q ss_pred -------HHhc----------------ccEEEcCCCcc-ccccHHHhcCcCCCC-CHHHHHHHHHHcChHHHHHhCCCcc
Q 044927 293 -------DLRT----------------KLSIIPQEPTL-FRGSVRTNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLL 347 (467)
Q Consensus 293 -------~~r~----------------~i~~v~Q~~~l-f~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~ 347 (467)
++|+ .+.|..++... ...|+.||+.++... ..++..++++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v-----------gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV-----------GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------CC
Confidence 0111 12223332222 233555555432211 112222233333 34
Q ss_pred cc-cccCCCCCCChhHHHHHHHHHHhcCC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhc
Q 044927 348 DS-SVSDEGENWSVGQRQLFCLGRVLLKR---NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDS 422 (467)
Q Consensus 348 ~t-~v~~~g~~LSgGq~Qrl~iARal~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~ 422 (467)
+. ..++...+|||||+||++|||+|+++ |+++||||||++||+.....+.+.++++. .|.|+|+|+|+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 35666789999999999999999996 79999999999999999999999998864 489999999999999899
Q ss_pred CEEEEE------eCCEEEEecCh
Q 044927 423 DMFMVL------SYGELVEYDLP 439 (467)
Q Consensus 423 d~i~vl------~~G~iv~~g~~ 439 (467)
|++++| ++|+|+++|+|
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999975
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=234.37 Aligned_cols=201 Identities=24% Similarity=0.361 Sum_probs=152.8
Q ss_pred cEEEEeEEEEeC-----CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE----eCCCCC
Q 044927 220 RIELEDLKVRYR-----PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL----DICSMG 290 (467)
Q Consensus 220 ~i~~~~vs~~y~-----~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~----~i~~~~ 290 (467)
.+.++|++++|- +-.-++++|+||+++.||++++-||||||||||+++|.+-|.|++|+|.+.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 378889988772 11236899999999999999999999999999999999999999999998542 344444
Q ss_pred HHH----HhcccEEEcCCCcc-cccc----HHHhcCcCCCC---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927 291 LKD----LRTKLSIIPQEPTL-FRGS----VRTNLDPLGMY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358 (467)
Q Consensus 291 ~~~----~r~~i~~v~Q~~~l-f~~t----v~enl~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L 358 (467)
+++ .|+.||||+|--.. ..-+ +.|-+.-.+.. ..++....+.+.++.+-+-++| ..++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence 443 35679999995322 2222 22322111111 1223344556666665555554 3689
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeC
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSY 430 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~ 430 (467)
||||+||+.|||.++.+-+||+|||||++||..+++.+.+.|++. .+|..+|=|-|+-+.-+. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999885 469999999999877665 999987754
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=6.5e-32 Score=237.24 Aligned_cols=207 Identities=20% Similarity=0.313 Sum_probs=171.5
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++||+..- -|-.+|..+..||++-+|||||||||||+-.++|+. |.+|+|.++|.++..++..++.++-+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 5677776432 377899999999999999999999999999999997 579999999999999999999999999
Q ss_pred EcCCC-ccccccHHHhcCcCCCC--CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC---
Q 044927 301 IPQEP-TLFRGSVRTNLDPLGMY--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK--- 374 (467)
Q Consensus 301 v~Q~~-~lf~~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~--- 374 (467)
+.|+. ..|...|...+...... -..++.++++..++ +..++....+|||||+||+-+|-..++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 99865 46777888888653221 11234444444444 444445557899999999999999885
Q ss_pred --C--CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChh-HHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927 375 --R--NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVP-TITDSDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 375 --~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
| .++|+||||.++||...+..+...|.+.. .|.+|||.+|+++ +++.||+++.++.|++...|..+|++..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 47999999999999999999988888864 5999999999997 6888999999999999999999999864
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=2.1e-30 Score=249.88 Aligned_cols=192 Identities=21% Similarity=0.332 Sum_probs=134.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------cCCCCCcc------
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------------RLVEPENG------ 277 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~----------------gl~~p~~G------ 277 (467)
.|+++|. ++|++ ..++++++ |++++|+||||||||||+++|. ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 3666665 34643 23777776 7899999999999999999998 44455555
Q ss_pred --EEEEcCEeCC-CC--CHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHH--hCCCc----
Q 044927 278 --RILIDGLDIC-SM--GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATIS--RLPML---- 346 (467)
Q Consensus 278 --~i~i~g~~i~-~~--~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~--~l~~g---- 346 (467)
+|.+++.+-. .. ....+++.++++||++.++.. ..+.+++...++..++...-. ..+.|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 5555543211 00 112345667777777665431 123445555555554432100 01111
Q ss_pred ---ccccccCCCCCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927 347 ---LDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419 (467)
Q Consensus 347 ---~~t~v~~~g~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 419 (467)
+....++.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+..
T Consensus 145 l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~ 224 (243)
T cd03272 145 LTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELL 224 (243)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 122345677899999999999999996 4689999999999999999999999999886688999999998877
Q ss_pred hhcCEEEEEe
Q 044927 420 TDSDMFMVLS 429 (467)
Q Consensus 420 ~~~d~i~vl~ 429 (467)
+.||++++|+
T Consensus 225 ~~~d~i~~l~ 234 (243)
T cd03272 225 EVADKFYGVK 234 (243)
T ss_pred hhCCEEEEEE
Confidence 7899999986
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=3.8e-30 Score=243.27 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=137.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEe-CCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFK-EGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~-~Ge~~~ivG~sGsGKSTll~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58899988 76432 46667654 589999999999999999999994 666665655543 11122333345667
Q ss_pred cEEEcCCCccccccHHHhcCcCCCCCHHHHHHH--HHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC-
Q 044927 298 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEA--MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK- 374 (467)
Q Consensus 298 i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~--~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~- 374 (467)
+++++|++... ..+.... ..+.++..+. ++..+ +++.+...+.+|||||+||++||||++.
T Consensus 78 v~~~f~~~~~~----~~~~r~~-gl~~~~~~~~~~l~~g~-----------l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKK----YRVERSR-GLDYDQFTRIVLLPQGE-----------FDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeE----EEEEEec-CCCHHHHHHhhhhhhcc-----------hHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 99999987321 1122211 2333333322 12222 3344455668899999999999999984
Q ss_pred ---------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 375 ---------RNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 375 ---------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
+|+++||||||++||+.+...+.+.+++..+ ++|+|+|||+++.+.. ||+++++++|.
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 6789999999999999999999999988754 7899999999998876 89999999985
No 378
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.7e-28 Score=250.41 Aligned_cols=215 Identities=25% Similarity=0.372 Sum_probs=170.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i 298 (467)
.++++|++..- .++|+||++++||++||.|--|||+|=++++|.|..++.+|+|.+||+++.-.++. ..+..|
T Consensus 263 ~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 47788876421 47899999999999999999999999999999999999999999999999877755 678889
Q ss_pred EEEcCCCc---cc-cccHHHhcCcC--CCCCHH-HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 299 SIIPQEPT---LF-RGSVRTNLDPL--GMYSDN-EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 299 ~~v~Q~~~---lf-~~tv~enl~~~--~~~~~~-~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
+|||.|-. +| ..+|++|+... ...... -+...-++....+++.++.-.- ........+||||-+||+.|||.
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhhhHHHHHH
Confidence 99999753 55 45999999642 111100 1222223333445565553111 11224457899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhh
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~ 441 (467)
|..+|++|||||||-|+|.-+...|++.|+++ .+|++||+||-.+.++. .||||+||.+|+|+..=+.++
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999986 46899999999999877 599999999999998655554
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=9.1e-29 Score=239.73 Aligned_cols=181 Identities=19% Similarity=0.284 Sum_probs=134.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCE-eCCCCC--HHHHhcccEEEcCCCc---------cc-cccHH
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGL-DICSMG--LKDLRTKLSIIPQEPT---------LF-RGSVR 313 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~-~i~~~~--~~~~r~~i~~v~Q~~~---------lf-~~tv~ 313 (467)
..+++||||||||||||+++|++++.|. .|+++..|. ++-... ....+.++++++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 468888776 432111 1122458999999862 22 34778
Q ss_pred HhcCcCC---------CCCHHHHHHHHHHcChHH----------HHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc-
Q 044927 314 TNLDPLG---------MYSDNEIWEAMEKCQLKA----------TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL- 373 (467)
Q Consensus 314 enl~~~~---------~~~~~~~~~~~~~~~l~~----------~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~- 373 (467)
+|+.... ....+++.+.++.+++.. .+.++-. ..........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN-MGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH-hHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 7774321 112356667777777630 0000000 002233456789999999999999997
Q ss_pred ---CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEe
Q 044927 374 ---KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS 429 (467)
Q Consensus 374 ---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~ 429 (467)
.+|+++||||||++||+.+...+.+.+++..+|.|+|+|||+.+.++.||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 58899999999999999999999999998877899999999988888899998775
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=2.3e-28 Score=229.35 Aligned_cols=163 Identities=23% Similarity=0.250 Sum_probs=127.3
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHH----hcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC-----ccccc-
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISAL----FRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-----TLFRG- 310 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l----~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~lf~~- 310 (467)
.++++.+| +++|+||||||||||+++| .|..+|.+|.+..+...+. ....+..+++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566777 9999999999999999999 4999998887762222222 123456799999998 33332
Q ss_pred cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH------HHHHHHhcCCCCEEEeeCC
Q 044927 311 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL------FCLGRVLLKRNRILVLDEA 384 (467)
Q Consensus 311 tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr------l~iARal~~~p~iliLDEp 384 (467)
|+.+|+.+. ..+++.+.+ .+....||+||+|| ++||||++.+|++++||||
T Consensus 92 ~~~~~~~~~---~~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFC---HQGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeee---chHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 888888642 222322221 23447899999996 7999999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeC
Q 044927 385 TASIDSATDA-ILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 385 ts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
|++||+.+.. .+.+.+++..+ ++|+|++||+++.+..||++++|++
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999 99999988654 7899999999998888999999965
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=7.1e-29 Score=251.07 Aligned_cols=197 Identities=23% Similarity=0.301 Sum_probs=163.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
.-+.++||+|.|+++. .++++++|-|..++++|+|||||||||||+|+++|...|..|.|.-.-.. ++
T Consensus 388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 3589999999997654 68999999999999999999999999999999999999999998654322 34
Q ss_pred EEEcCCC---ccccccHHHhcCc-CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 299 SIIPQEP---TLFRGSVRTNLDP-LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 299 ~~v~Q~~---~lf~~tv~enl~~-~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
++..|+- ..+..+..|++.. +. ....+++...+..+|+.......|. .+||+|||.||++||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHh
Confidence 4444532 2345677777743 22 2456778889999999866665552 689999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEE-ecCh
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE-YDLP 439 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~-~g~~ 439 (467)
..|.+|+|||||++||.++...+.++|.++. .++|++||+...+.. +++|.+.++|.+.. .|..
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999998863 479999999999987 99999999998853 4443
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=4.6e-29 Score=235.30 Aligned_cols=181 Identities=20% Similarity=0.256 Sum_probs=133.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-ccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r-~~i 298 (467)
.++++|.. .|++ ..+++++++ ++++|+|||||||||++++|. +++|.+. ...| +++
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence 47888875 7753 348999987 899999999999999999997 3345432 2223 579
Q ss_pred EEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHc-------------ChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKC-------------QLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~-------------~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
++++|+..+++. |+++++.++.....-+ .++.. +-...+..+|++.++. ...||+||||
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~----~~~lS~G~~~ 134 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKP---LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN----ISNLSGGEKT 134 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHH---HHHHCCcCCCCCceEEcCCcEEEeeccccccccc----hhhcCHHHHH
Confidence 999999877654 7777765432211000 00000 0001122345444443 3579999999
Q ss_pred HHHHHHHhcC----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927 365 LFCLGRVLLK----RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 365 rl~iARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
|++||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+..+.|||+++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999963 58999999999999999999999999998778899999999887778999999974
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=7.1e-27 Score=259.36 Aligned_cols=101 Identities=24% Similarity=0.350 Sum_probs=91.9
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh
Q 044927 346 LLDS-SVSDEGENWSVGQRQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT 420 (467)
Q Consensus 346 g~~t-~v~~~g~~LSgGq~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~ 420 (467)
|++. .++....+|||||+||++|||+|+++| +++||||||++||+.....+.+.|+++. +|.|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 467778999999999999999999999 9999999999999999999999998864 5899999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhhHhccC
Q 044927 421 DSDMFMVL------SYGELVEYDLPSKLMETN 446 (467)
Q Consensus 421 ~~d~i~vl------~~G~iv~~g~~~~l~~~~ 446 (467)
.||+|++| ++|+|++.|+++++.+..
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 99999999 799999999999998654
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=2.2e-26 Score=265.30 Aligned_cols=211 Identities=22% Similarity=0.259 Sum_probs=147.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHH---------HHhcCCCCCcc----E----EEEc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLIS---------ALFRLVEPENG----R----ILID 282 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~---------~l~gl~~p~~G----~----i~i~ 282 (467)
.++++|++. ..|+|+||+|++||+++|.|+||||||||++ .+.|...+..+ . |.+|
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 477777752 2699999999999999999999999999999 56665433111 1 3344
Q ss_pred CEeCCCCC----HH------HHh---------cc-----cEEEcCC------------------C---------------
Q 044927 283 GLDICSMG----LK------DLR---------TK-----LSIIPQE------------------P--------------- 305 (467)
Q Consensus 283 g~~i~~~~----~~------~~r---------~~-----i~~v~Q~------------------~--------------- 305 (467)
-.++..-+ .. ++| ++ ..+.++. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 33332210 01 233 11 1223332 0
Q ss_pred -----ccccc-cHHHhcCcCCC-C-----CHHHHHHHHHHcChHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHh
Q 044927 306 -----TLFRG-SVRTNLDPLGM-Y-----SDNEIWEAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 306 -----~lf~~-tv~enl~~~~~-~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~-v~~~g~~LSgGq~Qrl~iARal 372 (467)
..+.+ ||.||+.+... + ..+++.+.+ +.+.. .|++.. .++...+|||||+||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12223 66666654211 0 111222111 12222 245554 5677789999999999999999
Q ss_pred c---CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEe------CCEEEEecChhhH
Q 044927 373 L---KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLS------YGELVEYDLPSKL 442 (467)
Q Consensus 373 ~---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~------~G~iv~~g~~~~l 442 (467)
+ .+|+++||||||++||+.+.+.+.+.|+++. .|.|+|+|+|+++.+..||++++|. +|++++.|+++++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 6999999999999999999999999998864 5899999999999997899999996 7999999999999
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
...
T Consensus 905 ~~~ 907 (1809)
T PRK00635 905 IHL 907 (1809)
T ss_pred Hhc
Confidence 763
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=2.3e-27 Score=261.41 Aligned_cols=199 Identities=28% Similarity=0.363 Sum_probs=166.5
Q ss_pred CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcccEEEcCCC-cccc
Q 044927 233 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFR 309 (467)
Q Consensus 233 ~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~ 309 (467)
+++.+|+||+=-++||..+||+|+||||||||+++|+|=..- .+|+|+++|.+..+ +..++.+|||.|+. ++-.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 455689999999999999999999999999999999986533 47999999988653 67889999999965 6767
Q ss_pred ccHHHhcCcC---C---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC-CE
Q 044927 310 GSVRTNLDPL---G---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN-RI 378 (467)
Q Consensus 310 ~tv~enl~~~---~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p-~i 378 (467)
-||||-|.+. + ..+++ -++++++..++++.- |..||..|..||..||+|+.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 7999998542 1 22332 355666666666554 44588889999999999999999999999 88
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH--HhhcCEEEEEeC-CEEEEecChhh
Q 044927 379 LVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT--ITDSDMFMVLSY-GELVEYDLPSK 441 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~-G~iv~~g~~~~ 441 (467)
|+|||||||||..+...+++.++++. .|+||+..-|.++. .+..|+++.|++ |+.|..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999964 69999999999984 456999999985 78999998654
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=225.63 Aligned_cols=214 Identities=24% Similarity=0.374 Sum_probs=173.1
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC-CCCCHHHHhc
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI-CSMGLKDLRT 296 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i-~~~~~~~~r~ 296 (467)
..-++++|++..-+.+ ...++++||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ..+++.++|+
T Consensus 255 ~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 255 EVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 3468999999876433 3479999999999999999999999999999999999999999999999997 6777777654
Q ss_pred -ccEEEcCCCc----cccccHHHhcCcCCC----------CCHHHHHHHHHHcChHHHHHhC---CCcccccccCCCCCC
Q 044927 297 -KLSIIPQEPT----LFRGSVRTNLDPLGM----------YSDNEIWEAMEKCQLKATISRL---PMLLDSSVSDEGENW 358 (467)
Q Consensus 297 -~i~~v~Q~~~----lf~~tv~enl~~~~~----------~~~~~~~~~~~~~~l~~~i~~l---~~g~~t~v~~~g~~L 358 (467)
.+||||.|.+ ....|+.||+.+... ....++.+..+ +.++++ +.+. .....+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~----~~~a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSP----DAPARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCC----Ccchhhc
Confidence 5999999874 356699999853211 11222322221 223322 1222 2335789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEe
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~ 436 (467)
|||.+||+-+||-|.++|++||..+||-|||..+.+.|++.|.+. ..|+.|++||-+++++.. ||||.||.+|+|+..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 999999999999999999999999999999999999999988875 469999999999998775 999999999999988
Q ss_pred cChhh
Q 044927 437 DLPSK 441 (467)
Q Consensus 437 g~~~~ 441 (467)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 88776
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.2e-25 Score=203.18 Aligned_cols=217 Identities=22% Similarity=0.374 Sum_probs=172.4
Q ss_pred EEEEeEEEEeC--CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHH
Q 044927 221 IELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDL 294 (467)
Q Consensus 221 i~~~~vs~~y~--~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~ 294 (467)
+.++|++..+. .+...+++++|++++.||+-|+||+||||||-+.|.|+|..+- +.-+.++++.++-.+++++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 45667776663 2334589999999999999999999999999999999998753 45667789999999998887
Q ss_pred hc----ccEEEcCCCccc---cccH----HHhcC---cCCC------CCHHHHHHHHHHcChHHHHHhCCCcccccccCC
Q 044927 295 RT----KLSIIPQEPTLF---RGSV----RTNLD---PLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354 (467)
Q Consensus 295 r~----~i~~v~Q~~~lf---~~tv----~enl~---~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~ 354 (467)
|+ .|++++|+|.-. +.+| -+||- +.+. ....+..+.+.++|+.+.-+-+ ...
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--------~SY 155 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--------RSY 155 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--------HhC
Confidence 75 578999999754 2233 45652 1111 1234455677888876543321 112
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYG 431 (467)
Q Consensus 355 g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G 431 (467)
...|--||-|+|.||.|++.+|++||-||||+++|+.|+.++...+.... .+.|+++++|++..+.. ||+|-||.-|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 25688899999999999999999999999999999999999999998864 47899999999999875 9999999999
Q ss_pred EEEEecChhhHhcc
Q 044927 432 ELVEYDLPSKLMET 445 (467)
Q Consensus 432 ~iv~~g~~~~l~~~ 445 (467)
+-+|.++.+++++.
T Consensus 236 Q~~ESa~~e~l~~~ 249 (330)
T COG4170 236 QTVESAPSEELVTM 249 (330)
T ss_pred ccccccchhHHhcC
Confidence 99999999999873
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=2.6e-26 Score=221.91 Aligned_cols=202 Identities=18% Similarity=0.223 Sum_probs=137.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-C-C-----CCCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-I-C-----SMGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~-i-~-----~~~~~ 292 (467)
.++++|. .+|.+. .++...++ +++|+||||||||||+.+|.++..+..|+++.++.+ + . ..+..
T Consensus 3 ~i~l~nf-~~~~~~-------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGR-------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCC-------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 4777776 456321 12233344 999999999999999999999998888888655421 1 0 11111
Q ss_pred HHhcccEEEcCCCc--cccccHHHhcC---cCC-CCCHHHHHHHHHHcChHHHHHh--CCCccccccc---------CCC
Q 044927 293 DLRTKLSIIPQEPT--LFRGSVRTNLD---PLG-MYSDNEIWEAMEKCQLKATISR--LPMLLDSSVS---------DEG 355 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~--lf~~tv~enl~---~~~-~~~~~~~~~~~~~~~l~~~i~~--l~~g~~t~v~---------~~g 355 (467)
...-.+.+..|++. .+..++++... ..+ ..+.+++.+.++.+++..+... .++|--+.+. ...
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 22334455555432 33444443321 111 3456677788888887422111 1222111111 223
Q ss_pred CCCChhHHHHHHHHHHhcCC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhhcCEEEEEeC
Q 044927 356 ENWSVGQRQLFCLGRVLLKR----NRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
.+||+|||||++||||++.+ |+++||||||++||+.....+.+.|++..+ +.|+|+|||+.+.+..||++++|..
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 68999999999999999864 899999999999999999999999998754 8899999999998888999999875
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.5e-25 Score=223.21 Aligned_cols=195 Identities=19% Similarity=0.261 Sum_probs=165.0
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
++.+++.+|+|.|.++..+.+.+++++++.-+++++||+||+||||++|++.+-..|..|-+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 456999999999987765689999999999999999999999999999999999999999887765 668
Q ss_pred cEEEcCCCcc-ccccH--HHhcC-cCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 298 LSIIPQEPTL-FRGSV--RTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 298 i~~v~Q~~~l-f~~tv--~enl~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
|+|-.|...= ++..+ .|-+. .++..+++++++.|...|+...+...+ -..||||||-||++|.+.+
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 9999996543 22222 22221 122337899999999999887665543 2579999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~ 435 (467)
.+|.+|+|||||+.||.++-..+-++|+... -.||+|||+.+.+.. |+.+++.++|++..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999998864 359999999999997 99999999999975
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=4.2e-25 Score=223.77 Aligned_cols=222 Identities=17% Similarity=0.231 Sum_probs=146.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc--CEeCCCCCHHHHhc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID--GLDICSMGLKDLRT 296 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~--g~~i~~~~~~~~r~ 296 (467)
..+.++|+|+.|.+ ...++|..|++.+|+++||+|+|||||||++++|.|-..|..-++-+- ..++..-....+..
T Consensus 74 ~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~ 151 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQA 151 (614)
T ss_pred ccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHH
Confidence 46999999999964 358999999999999999999999999999999999888865544321 11111100011110
Q ss_pred ccEEEcCCCccccccHHHhcCcC-CCCCH---HHHHHHHHHcChHHHHHh----C-CCccc-ccccCCCCCCChhHHHHH
Q 044927 297 KLSIIPQEPTLFRGSVRTNLDPL-GMYSD---NEIWEAMEKCQLKATISR----L-PMLLD-SSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~tv~enl~~~-~~~~~---~~~~~~~~~~~l~~~i~~----l-~~g~~-t~v~~~g~~LSgGq~Qrl 366 (467)
-+-...++..-.. --.|++.-. .+... ..+++-+...+.+.+-.+ + ..|.. ........+||||||.|+
T Consensus 152 v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~ 230 (614)
T KOG0927|consen 152 VVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA 230 (614)
T ss_pred HhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH
Confidence 0000000000000 001111100 00000 122222222222211111 0 11222 233345578999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCE-EEEecChhhHhc
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGE-LVEYDLPSKLME 444 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~-iv~~g~~~~l~~ 444 (467)
+|||||+.+|++|+|||||++||+++..-+-+.|.+.... ++++++|.-+++.. |.+|+-|++++ +...|+.++...
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 9999999999999999999999999999999999886433 89999999999987 99999999999 678889888765
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.7e-24 Score=239.96 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=88.3
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHhcC---CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh
Q 044927 346 LLDS-SVSDEGENWSVGQRQLFCLGRVLLK---RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT 420 (467)
Q Consensus 346 g~~t-~v~~~g~~LSgGq~Qrl~iARal~~---~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~ 420 (467)
|++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.....+.+.|+++. +|.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4544 4677889999999999999999997 599999999999999999999999998864 5899999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhhH
Q 044927 421 DSDMFMVL------SYGELVEYDLPSKL 442 (467)
Q Consensus 421 ~~d~i~vl------~~G~iv~~g~~~~l 442 (467)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999876
No 392
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.7e-25 Score=215.39 Aligned_cols=191 Identities=22% Similarity=0.305 Sum_probs=152.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
+-+-+.||+|.|++. .+.+++++|-|.--..+|||||||.|||||+++|.|-++|+.|+.+=+- |-+|
T Consensus 585 PvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred CeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 457899999999865 4689999999999999999999999999999999999999999886443 4479
Q ss_pred EEEcCCCc--c-ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 299 SIIPQEPT--L-FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 299 ~~v~Q~~~--l-f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
|+.-|... | -..|-.|.+.-.-..+.++.+..+-..|+....... ....|||||+-||++|-.-++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCC
Confidence 99888653 2 233666766422234556667777777765543332 2367999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcC-EEEEEeCCEE
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSD-MFMVLSYGEL 433 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d-~i~vl~~G~i 433 (467)
|++|||||||++||.++-..+.++|.+.. ..||+|||+-..+...| ..+|+++-.|
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999999999999999874 46999999998877633 4566665444
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.9e-25 Score=222.16 Aligned_cols=200 Identities=22% Similarity=0.302 Sum_probs=144.6
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
...|..++++..|++ +..|++-++++..|.++|+|||||+|||||+++|+. |+|..-..+ +++|.-
T Consensus 78 ~~Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred ccceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 346999999999974 458999999999999999999999999999999998 444332211 111111
Q ss_pred cEEEcCCCccccccHHHhcCcC-----CCCCHHHHHH-HHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 298 LSIIPQEPTLFRGSVRTNLDPL-----GMYSDNEIWE-AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 298 i~~v~Q~~~lf~~tv~enl~~~-----~~~~~~~~~~-~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
--...|+ .+-.++-+..+... ...+.+++.. ++.-.|..+.....| -..||||.|-|++||||
T Consensus 144 ~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 144 DTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARA 212 (582)
T ss_pred chHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHH
Confidence 0001111 11122222222110 0112344444 666666666666655 36899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEE-EEecChhhHhc
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGEL-VEYDLPSKLME 444 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~i-v~~g~~~~l~~ 444 (467)
|..+|+||+|||||+.||..+-.-+-+.|..+. .|+|+|||+-.++.. |.-|+.+++-++ ...|+.++..+
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999999999999999998763 899999999999987 889999988666 35677776654
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=4.3e-25 Score=206.18 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=117.3
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-CHHHHhcccEEEcCCCccccccHHHhc
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~-~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|..+.++ ....-...+.+.+|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46677888887 7799999999999999999744332211 11112211111 00111345777777765544 2
Q ss_pred CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh----cCCCCEEEeeCCCCCCCHHH
Q 044927 317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL----LKRNRILVLDEATASIDSAT 392 (467)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal----~~~p~iliLDEpts~LD~~~ 392 (467)
.....+.+++.+.++ . .....+...+||+|||||++||||+ +.+|+++||||||++||+.+
T Consensus 84 -~~~~~~~~~~~~~l~---------~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 -PLCVLSQDMARSFLT---------S-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred -cCCHHHHHHHHHHhc---------c-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 111111222323332 2 1122344578999999999999999 68999999999999999999
Q ss_pred HHHHHHHHHHHC-C---CceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 393 DAILQRIIREEF-P---GSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 393 ~~~i~~~l~~~~-~---~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
...+.+.|++.. + ++|+|++||+++.+..+|+|.+|..|+
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999998753 2 368999999999999999999998754
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=3.5e-24 Score=213.03 Aligned_cols=168 Identities=24% Similarity=0.366 Sum_probs=130.2
Q ss_pred ecceeEEE-----eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCc-ccccc
Q 044927 238 LKGITCTF-----KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LFRGS 311 (467)
Q Consensus 238 L~~isl~i-----~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~t 311 (467)
+.++.|++ ..||+++++||||-||||++++|+|..+|++|+ ..++ +++|=||--. -|.+|
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gt 417 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGT 417 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCc
Confidence 44555554 667899999999999999999999999999998 2222 5889999432 38899
Q ss_pred HHHhcCcC-CC-CCHHHH-HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCC
Q 044927 312 VRTNLDPL-GM-YSDNEI-WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388 (467)
Q Consensus 312 v~enl~~~-~~-~~~~~~-~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~L 388 (467)
|++-+.-. +. +.+..+ .+.++-.++++. +.....+|||||.||++||-||.+++++++||||++.|
T Consensus 418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i-----------~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL-----------LERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred HHHHHHHhhhhhcccchhHHhhcCccchHHH-----------HhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 99877421 11 111111 123333444443 33445789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeC
Q 044927 389 DSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSY 430 (467)
Q Consensus 389 D~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~ 430 (467)
|.+.+-.+.+.|++. ..++|.++|-|++-.+.. +||++|++.
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999884 357999999999999987 999999973
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.89 E-value=3.7e-22 Score=180.09 Aligned_cols=211 Identities=24% Similarity=0.248 Sum_probs=149.6
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
...|++.++.|+|+... |++.|+|++++.|....+||.||||||||+|+|.|-.-...|.|.+.|.+--.-..-.-...
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 34699999999998665 68999999999999999999999999999999999988888999999975422000000112
Q ss_pred cEEEcCC----------Cccc-cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 298 LSIIPQE----------PTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 298 i~~v~Q~----------~~lf-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
..|+--+ ..+- .-++..-|.-.+....++-++. ++- +|-.+.=+-..+|-|||+|+
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~L---------I~i----LDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKL---------IDI----LDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhhccCCChhHhhhh---------hhh----eeccceEEEeeccccchhhh
Confidence 2333211 1111 1122222210010111111111 111 22212222356899999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
-|+..|++.=++|+|||-|--||...+..+.+.+++. .+++||++.||-.+-++. ..+++.|++|+++..-+.++.
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 9999999999999999999999999999999999875 358999999999998775 999999999999985444433
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=2.8e-22 Score=183.99 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=75.3
Q ss_pred HHhCCCcccccccCCCCCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEcc
Q 044927 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAH 414 (467)
Q Consensus 340 i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH 414 (467)
+..+|+|-.|++ ||+|||||++|||+++ .+|+++|+|||+++||+...+.+.+.+.+..+ ++|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 445677766665 9999999999999995 79999999999999999999999999988644 689999999
Q ss_pred ChhHHhhcCEEEEEeC
Q 044927 415 RVPTITDSDMFMVLSY 430 (467)
Q Consensus 415 ~l~~~~~~d~i~vl~~ 430 (467)
+++.+..+|+++.+.+
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999888999999986
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.87 E-value=5.4e-22 Score=185.74 Aligned_cols=145 Identities=15% Similarity=0.130 Sum_probs=107.7
Q ss_pred ecceeEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927 238 LKGITCTFKEGT-RVGVVGRTGSGKTTLISALF--------RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 308 (467)
Q Consensus 238 L~~isl~i~~Ge-~~~ivG~sGsGKSTll~~l~--------gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 308 (467)
.-++||++.+|+ +++|.||||||||||++.|. |.+-|....+ .++|+.|....+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 457999999996 69999999999999999998 5555532111 233433331110
Q ss_pred cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCC
Q 044927 309 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388 (467)
Q Consensus 309 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~L 388 (467)
. ..+. +.++-..+|+||||+..+++++ .+|+++++|||++++
T Consensus 80 g--------------------------~~~~-----------l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 80 G--------------------------DEQS-----------IEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred C--------------------------chhh-----------hhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 0 0000 1112256899999999999985 899999999999999
Q ss_pred CHHHHHHHHH-HHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927 389 DSATDAILQR-IIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 389 D~~~~~~i~~-~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g 437 (467)
|+.....+.. .++... .+.|+|++||+.+....||++++|++|++..++
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999887754 555543 478999999997766779999999999998763
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=1e-21 Score=185.33 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=113.0
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hc-----ccEEEcCCCcccccc
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RT-----KLSIIPQEPTLFRGS 311 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~-----~i~~v~Q~~~lf~~t 311 (467)
++++.+++.+| ..+|+||||||||||+.+|.-..-...... ... -...++ +. .+-...+.. ...
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~---~~~ 83 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGN---PGN 83 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeC---CCc
Confidence 34556666655 668999999999999999875542211100 000 011111 11 111111110 001
Q ss_pred -HHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh----cCCCCEEEeeCCCC
Q 044927 312 -VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL----LKRNRILVLDEATA 386 (467)
Q Consensus 312 -v~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal----~~~p~iliLDEpts 386 (467)
..+|++. ..+.++..+....... +.+..+|.+.+. -..+...||+|||||+.+|+++ +.+|+++|+||||+
T Consensus 84 ~~~~n~~~--~~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 84 IQVDNLCQ--FLPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred cccCCceE--EEchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 2334331 1234445555444333 455566655432 2446689999999998877554 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHC-C-C-ceEEEEccChhHHh-hcC--EEEEEeCCE
Q 044927 387 SIDSATDAILQRIIREEF-P-G-STVITVAHRVPTIT-DSD--MFMVLSYGE 432 (467)
Q Consensus 387 ~LD~~~~~~i~~~l~~~~-~-~-~tvi~itH~l~~~~-~~d--~i~vl~~G~ 432 (467)
+||+.+...+.+.+.+.. + + .|+|++||++.... .|| +|+++.+|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999998864 3 4 47999999986554 455 788888886
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.2e-21 Score=189.43 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=70.5
Q ss_pred CCChhHHHHHHHHHHhcC----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 357 NWSVGQRQLFCLGRVLLK----RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
.|||||+||+++|++++. +|++++|||||++||+.+...+.+.+++..++.|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998877899999999999887899999999874
Q ss_pred E
Q 044927 433 L 433 (467)
Q Consensus 433 i 433 (467)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=1.3e-21 Score=216.18 Aligned_cols=199 Identities=25% Similarity=0.304 Sum_probs=164.1
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC---CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc-cc
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RG 310 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p---~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 310 (467)
..+|+|+|.-++||+.+.+.||.|||||||+++++|-.+- ..|+|.+||.+.++..+ ++.++|.+|+..-| ..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3589999999999999999999999999999999997754 35799999999888765 77899999977655 45
Q ss_pred cHHHhcCcCC-------CCC---HHHHH-----HHHHHcChHHHHHhCCCcccccccCCC-CCCChhHHHHHHHHHHhcC
Q 044927 311 SVRTNLDPLG-------MYS---DNEIW-----EAMEKCQLKATISRLPMLLDSSVSDEG-ENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 311 tv~enl~~~~-------~~~---~~~~~-----~~~~~~~l~~~i~~l~~g~~t~v~~~g-~~LSgGq~Qrl~iARal~~ 374 (467)
||+|-+++.. .++ +.+.. .+++.. .+.+..||.||++. ...|||||.||++|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkil-------GL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL-------GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHh-------CchhhccceecccccccccCcccceeeeeeeeec
Confidence 9999996531 122 11111 122222 34456899998654 7899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChh--HHhhcCEEEEEeCCEEEEecChhhHh
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVP--TITDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~--~~~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+|+++.+||+|.|||..|.-++.+.+++..+ +.|.++.-|..+ .....|.|++|.+|+++..|+.++.+
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 9999999999999999999999999998643 788888888765 45669999999999999999999885
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=1.4e-21 Score=194.67 Aligned_cols=185 Identities=26% Similarity=0.369 Sum_probs=130.2
Q ss_pred eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc-------
Q 044927 225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK------- 297 (467)
Q Consensus 225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~------- 297 (467)
++..+|+.+.. .|..+- +.++|+.+||+||||-||||.+|+|+|.+.|.=|+- ++-+ +++ +-+++.
T Consensus 79 e~vHRYg~NgF-kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp--~wd-eVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVNGF-KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP--SWD-EVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCCce-EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC--CHH-HHHHHhhhhHHHH
Confidence 56778875543 344442 357899999999999999999999999999987753 2210 111 001110
Q ss_pred -----------cEEEcC----CCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 298 -----------LSIIPQ----EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 298 -----------i~~v~Q----~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
+..=|| -|..+.|+|.|-+.- .-+.-..++.++++ +++..++....+|||||
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~-----------~de~g~~devve~l--~L~nvl~r~v~~LSGGE 218 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK-----------VDERGKFDEVVERL--GLENVLDRDVSELSGGE 218 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHh-----------hhhcCcHHHHHHHh--cchhhhhhhhhhcCchH
Confidence 111111 122334444443321 11111234445544 35556666778999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEe
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLS 429 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~ 429 (467)
-||++||.|++++++++++|||||-||...+-...+.++++.+ +++||+|.|+|..+.. +|-|.++.
T Consensus 219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999999999999999999876 7999999999999987 89988886
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.4e-19 Score=191.22 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=92.6
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHh
Q 044927 346 LLDS-SVSDEGENWSVGQRQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTIT 420 (467)
Q Consensus 346 g~~t-~v~~~g~~LSgGq~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~ 420 (467)
|+.. .+|....+|||||.|||-||.-|.++. -++||||||.||-.+-.+++++.|.++ .+|.|||+|.|+|+.++
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 4443 578999999999999999999999887 899999999999999999999999886 46999999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhhHhccCchH
Q 044927 421 DSDMFMVL------SYGELVEYDLPSKLMETNSAF 449 (467)
Q Consensus 421 ~~d~i~vl------~~G~iv~~g~~~~l~~~~~~~ 449 (467)
.||+|+=| +.|+|+++|+|+|+.+..+.|
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~ 924 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASY 924 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccch
Confidence 99999988 468999999999998754433
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.83 E-value=2.1e-20 Score=169.12 Aligned_cols=136 Identities=23% Similarity=0.303 Sum_probs=100.7
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE-EEcCCCccccccHHHhcCcC
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVRTNLDPL 319 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv~enl~~~ 319 (467)
.++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.+ .+|+...-|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3445556679999999999999999998766555555444311 00 111 122211111
Q ss_pred CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC----CCCEEEeeCCCCCCCHHHHHH
Q 044927 320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK----RNRILVLDEATASIDSATDAI 395 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~----~p~iliLDEpts~LD~~~~~~ 395 (467)
+.. . .+||+||+||+++||+|.. +|+++|+|||++++|+.....
T Consensus 72 --------------------i~~-------~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 --------------------IFT-------R-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred --------------------ehh-------e-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 000 0 1289999999999999986 789999999999999999999
Q ss_pred HHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeC
Q 044927 396 LQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 396 i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
+.+.+.+.. +++++|++||+++....+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999888753 36899999999999999999999975
No 405
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.82 E-value=2.1e-20 Score=179.67 Aligned_cols=198 Identities=16% Similarity=0.228 Sum_probs=135.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE--EEcCEeCCCCCHHHHhccc--EEEcCCCccccccHHHhcCc
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI--LIDGLDICSMGLKDLRTKL--SIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i--~i~g~~i~~~~~~~~r~~i--~~v~Q~~~lf~~tv~enl~~ 318 (467)
+.+.+||+++|+||+|+|||||++.+.+..+...+.+ .+....-+..+..++.+.+ .+|.... ..+....+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 6789999999999999999999999999887764332 2222221224555555444 1111100 0011111100
Q ss_pred CCCCCHHHHHHHHHHcC-----hHHHHHhCCCcccccccCCCCCCChhH--------HHHHHHHHHhcCCCCEEEeeCCC
Q 044927 319 LGMYSDNEIWEAMEKCQ-----LKATISRLPMLLDSSVSDEGENWSVGQ--------RQLFCLGRVLLKRNRILVLDEAT 385 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-----l~~~i~~l~~g~~t~v~~~g~~LSgGq--------~Qrl~iARal~~~p~iliLDEpt 385 (467)
.... -+.. +.....| +-|.+.+++.++++..++.|..+|||+ +||+++||+++++++|.+| ||
T Consensus 88 ~~~~-~~~a-~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T 163 (249)
T cd01128 88 AEMV-LEKA-KRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--AT 163 (249)
T ss_pred HHHH-HHHH-HHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--ee
Confidence 0000 0001 1111212 235678899999999999999999999 9999999999999999999 99
Q ss_pred CCCCHHHHHH-HHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927 386 ASIDSATDAI-LQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454 (467)
Q Consensus 386 s~LD~~~~~~-i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~ 454 (467)
+.+|+.++.. ++ +.+.. .++|.|+++|++.....+|.|.||++|++ +++++..++.|..++.
T Consensus 164 ~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 164 ALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWL 227 (249)
T ss_pred heecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHH
Confidence 9999766543 43 34433 57899999999999999999999999997 6777766667766643
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.82 E-value=7e-20 Score=180.56 Aligned_cols=177 Identities=28% Similarity=0.449 Sum_probs=139.3
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--------CCCCccEEEEcCEeCCCCCHHHHhcccEEEcCC--C
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--------VEPENGRILIDGLDICSMGLKDLRTKLSIIPQE--P 305 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--------~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~--~ 305 (467)
.+|+|+||++++|+.++|+|+|||||||++++|+|. |.|++|.|.+--..++ +.+|-+ |
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 589999999999999999999999999999999985 6899999987432221 234442 3
Q ss_pred ccccccHHHhcCcCCCCCH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927 306 TLFRGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384 (467)
Q Consensus 306 ~lf~~tv~enl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp 384 (467)
.+=.-|+.|.+. ....| ....++++.+|+.+....- ..-..||-|||-|..||+++..+|.+++.||.
T Consensus 466 ~f~~~tilehl~--s~tGD~~~AveILnraGlsDAvlyR---------r~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 466 EFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAVLYR---------RKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred ccCchhHHHHHh--hccCchhHHHHHHHhhccchhhhhh---------ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 322337777763 22222 2345678888887654321 12267999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh--cCEEEEEeCCEEE
Q 044927 385 TASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD--SDMFMVLSYGELV 434 (467)
Q Consensus 385 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv 434 (467)
-|.||+.|...+...|.++. .+.|++++|||.+.... -|+++.+.-|+..
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999998865 58999999999999875 6999998877654
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=1.4e-19 Score=209.43 Aligned_cols=209 Identities=18% Similarity=0.233 Sum_probs=143.5
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------cCCCCCccEEEEcCEeCCCCCH----------HHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------RLVEPENGRILIDGLDICSMGL----------KDLRT 296 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~----------gl~~p~~G~i~i~g~~i~~~~~----------~~~r~ 296 (467)
=|+|++.+||-|..++|.|.||||||||++-.+ |. +.-+--|.+|-.+|..-+. .++|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 489999999999999999999999999998544 21 2233457787776643321 23455
Q ss_pred ccEEEcC------CCcccccc--------------HHHhcCcCC------------CCCHHH-----------------H
Q 044927 297 KLSIIPQ------EPTLFRGS--------------VRTNLDPLG------------MYSDNE-----------------I 327 (467)
Q Consensus 297 ~i~~v~Q------~~~lf~~t--------------v~enl~~~~------------~~~~~~-----------------~ 327 (467)
-++-.|+ .+..|+-. +.-++.|.+ .+..+- +
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 4443333 12222111 111111111 111111 1
Q ss_pred HHHHHHc----ChHHHHHhC-CCcccc-cccCCCCCCChhHHHHHHHHHHhcCC---CCEEEeeCCCCCCCHHHHHHHHH
Q 044927 328 WEAMEKC----QLKATISRL-PMLLDS-SVSDEGENWSVGQRQLFCLGRVLLKR---NRILVLDEATASIDSATDAILQR 398 (467)
Q Consensus 328 ~~~~~~~----~l~~~i~~l-~~g~~t-~v~~~g~~LSgGq~Qrl~iARal~~~---p~iliLDEpts~LD~~~~~~i~~ 398 (467)
.++++-. .+...+..+ ..|+.. .+|+...+|||||.|||-||.-|.++ +.++||||||.||++...+.+.+
T Consensus 1664 ~ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1664 EEVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 1222221 111111111 124432 57888999999999999999999876 78999999999999999999999
Q ss_pred HHHHH-CCCceEEEEccChhHHhhcCEEEEEe------CCEEEEecChhhHhccC
Q 044927 399 IIREE-FPGSTVITVAHRVPTITDSDMFMVLS------YGELVEYDLPSKLMETN 446 (467)
Q Consensus 399 ~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~------~G~iv~~g~~~~l~~~~ 446 (467)
.++++ ..|.|+|+|.|+++.++.||+|+=|- .|+|++.|+|+++.+..
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 99886 46899999999999999999999994 68999999999998743
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.81 E-value=6.8e-20 Score=173.99 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=111.5
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE-EEcCCCccccccHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVR 313 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv~ 313 (467)
..+.+|+++++++|++++|.||||+||||+++.+.- -.+..++| +||.+...++ +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 358999999999999999999999999999999981 12333455 6776543221 11
Q ss_pred HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--cCCCCEEEeeCC---CCCC
Q 044927 314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILVLDEA---TASI 388 (467)
Q Consensus 314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal--~~~p~iliLDEp---ts~L 388 (467)
+.+ +...++.+.+ ...+|.|++|+..+++++ +.+|+++||||| |+++
T Consensus 74 ~~i--------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCI--------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred cee--------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 221 1112222111 246899999999999999 899999999999 9999
Q ss_pred CHHHHHH-HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927 389 DSATDAI-LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDL 438 (467)
Q Consensus 389 D~~~~~~-i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~ 438 (467)
|+..... +.+.+.+ ..++|+|++||..+....||++..+++|++...++
T Consensus 126 D~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9987543 3355543 34789999999755555699999999999987664
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.78 E-value=2.3e-19 Score=168.24 Aligned_cols=154 Identities=11% Similarity=0.069 Sum_probs=103.2
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl-~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
..++++.+|++++|+|||||||||++++|.+. +.+..|.... ..+..+++..|....|. ..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i-- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSI-- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Ccccc--
Confidence 34566678999999999999999999999943 2222221110 00122333322211111 01111
Q ss_pred CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927 319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~ 398 (467)
.++-..++.+++| +..+.+++.+|+++|+||||+++|+.....+..
T Consensus 86 ---------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 1112345666665 666678889999999999999999987766644
Q ss_pred H-HHHH-CCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhH
Q 044927 399 I-IREE-FPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 399 ~-l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 442 (467)
. ++.. ..+.++|++||+.+.+..+|++..++.|++...++..++
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 3 4443 247899999999999999999999999999988876544
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.4e-18 Score=170.23 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=62.1
Q ss_pred CCCChhHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-c---
Q 044927 356 ENWSVGQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-S--- 422 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~--- 422 (467)
..+|+||+|++++||+|+ .+|++++|||||++||+.....+.+.+.+.. .+++++|+...+.. |
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~ 258 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRR 258 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccC
Confidence 457999999999999985 7999999999999999999999999997653 45555555554443 5
Q ss_pred CEEEEEeCCEE
Q 044927 423 DMFMVLSYGEL 433 (467)
Q Consensus 423 d~i~vl~~G~i 433 (467)
++++.+++|+|
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 78999999986
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.76 E-value=1.9e-18 Score=161.48 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=95.6
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHH
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRT 314 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e 314 (467)
++++|++++. |++++|+||||||||||+|+|.|... +...|.++... .+++|...+|. .|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 4788887664 79999999999999999999987543 12356554321 25667555664 58999
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~ 394 (467)
|+.........+.. .+.+.++.+. ..+|+++|+||||+++|+....
T Consensus 79 ~l~~~~s~~~~e~~------~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 79 DLRDGISYFYAELR------RLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred ccccccChHHHHHH------HHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHHH
Confidence 99643222122211 1223333321 0799999999999999999876
Q ss_pred HHHH-HHHHH-CCCceEEEEccChhHHhh---cCEEEEE
Q 044927 395 ILQR-IIREE-FPGSTVITVAHRVPTITD---SDMFMVL 428 (467)
Q Consensus 395 ~i~~-~l~~~-~~~~tvi~itH~l~~~~~---~d~i~vl 428 (467)
.+.. .++.. ..+.|+|++||+++.+.. .++|-.+
T Consensus 125 ~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 125 AASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 6543 45553 347899999999988764 4455444
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.8e-19 Score=174.27 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=134.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHH---
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDL--- 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p~~G~i~i~g~~i~~~~~~~~--- 294 (467)
.|.++|.+.+-.+ +..+.|.|+.|-.|..+++|||||-|||||++-|+. +--|..=.++++.+.+-.-+...+
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 4788888887643 347899999999999999999999999999999973 333444455555554422111100
Q ss_pred ----hcccEEEcCCCccc----cc--cHHHhcCcCCCCCHHHHHHHHHHcChH-------HHHHhCCCcccccccCCC-C
Q 044927 295 ----RTKLSIIPQEPTLF----RG--SVRTNLDPLGMYSDNEIWEAMEKCQLK-------ATISRLPMLLDSSVSDEG-E 356 (467)
Q Consensus 295 ----r~~i~~v~Q~~~lf----~~--tv~enl~~~~~~~~~~~~~~~~~~~l~-------~~i~~l~~g~~t~v~~~g-~ 356 (467)
.++..++-.+..|. .| |+.|-+ +++..-++..|.. ..+.. .|++-.+-++. .
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl--------~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERL--------KEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTT 411 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH--------HHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCcc
Confidence 01111111111110 00 222211 0111112222211 11111 24444444443 6
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-
Q 044927 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV- 434 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv- 434 (467)
.+|||.|-||+|||||...|-+|.|||||++||....--+-+.|+.+ .+|.++|+|+-.++.. |..|+.|++-++-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 79999999999999999999999999999999998777777777766 4799999999999987 9999999988764
Q ss_pred EecCh
Q 044927 435 EYDLP 439 (467)
Q Consensus 435 ~~g~~ 439 (467)
..|++
T Consensus 490 YrGNY 494 (807)
T KOG0066|consen 490 YRGNY 494 (807)
T ss_pred hcchH
Confidence 34444
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=1.6e-17 Score=184.83 Aligned_cols=99 Identities=25% Similarity=0.296 Sum_probs=89.6
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh
Q 044927 346 LLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD 421 (467)
Q Consensus 346 g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 421 (467)
|++.. ++....+|||||+||+.|||||..+| +++||||||++||+.....+.+.|+++. +|.|||+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 45433 56777899999999999999999986 8999999999999999999999999864 48999999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhhHhc
Q 044927 422 SDMFMVL------SYGELVEYDLPSKLME 444 (467)
Q Consensus 422 ~d~i~vl------~~G~iv~~g~~~~l~~ 444 (467)
||+|++| ++|+|++.|+++++..
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 9999999 8999999999999864
No 414
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.72 E-value=3.7e-17 Score=158.93 Aligned_cols=142 Identities=18% Similarity=0.267 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHH
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI 327 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~ 327 (467)
..++|+||||||||||++.|+|+++|++|+|.++|+++...+ ..++...++++||...--..++.+|.. ..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~~- 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KAE- 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HHH-
Confidence 678999999999999999999999999999999999998664 467777889999965332334444420 000
Q ss_pred HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCc
Q 044927 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGS 407 (467)
Q Consensus 328 ~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 407 (467)
| ...++|+ .+|+++++|||++ ...+...++....|.
T Consensus 185 ---------------------------------~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 185 ---------------------------------G---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGV 220 (270)
T ss_pred ---------------------------------H---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCC
Confidence 1 1344444 4999999999974 233444444445689
Q ss_pred eEEEEccChhH--H------------hhcCEEEEEeCCEEEEecChhhHh
Q 044927 408 TVITVAHRVPT--I------------TDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 408 tvi~itH~l~~--~------------~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|+|+++|+.+. + ..+||+++|++|+ ..|+++++.
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997655 3 2389999999887 677776654
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=1.7e-17 Score=184.94 Aligned_cols=100 Identities=25% Similarity=0.298 Sum_probs=90.4
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh
Q 044927 346 LLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD 421 (467)
Q Consensus 346 g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 421 (467)
|++.. .+....+|||||+|||+|||||..+| +++||||||++||+.....+.+.|+++. .|.|||+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 55433 56677899999999999999999997 9999999999999999999999999864 48999999999999988
Q ss_pred cCEEEEE------eCCEEEEecChhhHhcc
Q 044927 422 SDMFMVL------SYGELVEYDLPSKLMET 445 (467)
Q Consensus 422 ~d~i~vl------~~G~iv~~g~~~~l~~~ 445 (467)
||+|++| ++|+|+..|+++++.+.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998653
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.70 E-value=7.8e-17 Score=159.63 Aligned_cols=192 Identities=24% Similarity=0.331 Sum_probs=138.5
Q ss_pred EEeCCCCCceecceeEEEeCCc-----EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927 228 VRYRPNTPLVLKGITCTFKEGT-----RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 302 (467)
Q Consensus 228 ~~y~~~~~~~L~~isl~i~~Ge-----~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 302 (467)
+.|++.. ..+.+..|.|+.|+ ++..+|.||.||||++++++|..+|++|. ++..+ .++|=|
T Consensus 343 y~Yp~m~-k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 343 YSYPKMK-KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eccCcce-eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 4565443 36889999999885 68899999999999999999999998762 22222 477888
Q ss_pred CCCc-cccccHHHhcCc--CCCCCHHH-HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 303 QEPT-LFRGSVRTNLDP--LGMYSDNE-IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 303 Q~~~-lf~~tv~enl~~--~~~~~~~~-~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
|... =|.+|||+-+.- ...+.+.+ +.++++...+ +..++....+||||+.||+++|-+|=+.+++
T Consensus 409 qkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i-----------e~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI-----------ENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred cccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH-----------HHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 8654 477898886631 01111111 2223333333 3334445578999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHH--HCCCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHhc
Q 044927 379 LVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLME 444 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~--~~~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~ 444 (467)
++.|||.+-||.+.+..--..+++ +..++|-.+|.|++-.... +||++|.+. +.....-+|+.|++
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 999999999999988777777766 3457999999999887765 999999974 22333445556654
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.69 E-value=1.4e-16 Score=149.28 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=95.0
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE-EEcCCCccccccHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVR 313 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv~ 313 (467)
..+.+|+++++++|+.++|.||||+||||+++.+.++. +..++| +||-.. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 35899999999999999999999999999999998873 222333 222211 122455
Q ss_pred HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927 314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393 (467)
Q Consensus 314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~ 393 (467)
|+|...-. .+..+.++...+|+|++|+ ..+-+++.+|+++|||||++|+|+...
T Consensus 73 d~I~~~~~-------------------------~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSRLS-------------------------NDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEecC-------------------------CccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 66521100 0111122336789999975 455567899999999999999999764
Q ss_pred HHH-HHHHHHH-CCCceEEEEccChhHHhh
Q 044927 394 AIL-QRIIREE-FPGSTVITVAHRVPTITD 421 (467)
Q Consensus 394 ~~i-~~~l~~~-~~~~tvi~itH~l~~~~~ 421 (467)
..+ ...++.+ ..++++|++||+.+.+..
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 443 3334443 248999999999998775
No 418
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.68 E-value=4e-17 Score=135.53 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=70.0
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
.+|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++..+.++.++++||+ +|.+||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 4899999999999999999999999999999986 89999999999999888888889999888 999999999
Q ss_pred cCc
Q 044927 316 LDP 318 (467)
Q Consensus 316 l~~ 318 (467)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 964
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.66 E-value=2.7e-16 Score=148.79 Aligned_cols=156 Identities=12% Similarity=0.137 Sum_probs=102.2
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVR 313 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~ 313 (467)
+.+.+|++++.++ ++++|+|||||||||+++.+.+..-. |+ .|..+ +. .+..++++.| +|. .++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---PA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---cc--ccceecceee---EeccCCch
Confidence 3488999999887 99999999999999999999875422 11 11111 11 1234566644 232 2344
Q ss_pred HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--cCCCCEEEeeCC---CCCC
Q 044927 314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILVLDEA---TASI 388 (467)
Q Consensus 314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal--~~~p~iliLDEp---ts~L 388 (467)
||+... .|.=...+..+++++ +.+|+++||||| |+++
T Consensus 84 ~~ls~g--------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 84 DDLAGG--------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred hhhccC--------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 444211 011122223454444 469999999999 9999
Q ss_pred CHHH-HHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927 389 DSAT-DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 389 D~~~-~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
|+.. ...+.+.+.+. .++|+|++||+.+....+|++..+++|++...++.+++.
T Consensus 126 D~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 126 DGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 9865 24455555442 378999999998777778888778889988777766663
No 420
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=3.9e-15 Score=174.15 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=101.9
Q ss_pred cccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH------HHHHHHHhcCCCCEEE
Q 044927 307 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ------LFCLGRVLLKRNRILV 380 (467)
Q Consensus 307 lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q------rl~iARal~~~p~ili 380 (467)
.|+||+.+||.+.++.+++ +.+++.++...++..+|.| ++.++..| .||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4899999999874445544 6788889999999999999 89888775 89999999 9999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHH------CCCceEEEEccChhHHhh------cCEEEEEe
Q 044927 381 LDEATASIDSATDAILQRIIREE------FPGSTVITVAHRVPTITD------SDMFMVLS 429 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~------~~~~tvi~itH~l~~~~~------~d~i~vl~ 429 (467)
|||||++||+.+...+.+.|... ..+.|+|+|||++..+.. ||+.+-+.
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 99999999999999888888764 136899999999998763 56766554
No 421
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.61 E-value=1.2e-13 Score=132.40 Aligned_cols=171 Identities=15% Similarity=0.242 Sum_probs=140.1
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.+++.+...+..++..++.+++.++++++++|+++++++.+.++..++...+.+..++..+...+..++..
T Consensus 101 ~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (275)
T PF00664_consen 101 LSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELN 180 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccc
Confidence 37899999999999999999999999999999999999999999998877777777777778777777777778888999
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HhCCCccHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--V-LLPGKHLPGF 157 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~g~ 157 (467)
+.+.|.++|+++||+|+.|+++.+++.+..++..+...+......+.......+..+...++..+. . ...|.+++|.
T Consensus 181 ~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~ 260 (275)
T PF00664_consen 181 SFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGT 260 (275)
T ss_dssp HHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHH
T ss_pred cccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence 999999999999999999999999999999888777777666666666655555554333333332 2 2448899999
Q ss_pred HHHHHHHHHHHHHH
Q 044927 158 VGLSLSYALTLSSI 171 (467)
Q Consensus 158 ~~~~~~~~~~l~~~ 171 (467)
+.++..+...+..|
T Consensus 261 ~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 261 LVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 98888888777655
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.60 E-value=3.7e-15 Score=141.46 Aligned_cols=73 Identities=26% Similarity=0.378 Sum_probs=59.5
Q ss_pred CCChhHHHHHHHHHHh----cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEe
Q 044927 357 NWSVGQRQLFCLGRVL----LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS 429 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~ 429 (467)
.||||||-+++||--| ..++|++|||||.++||+.....+.+.|++..++.-+|++||+......||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999998554 467899999999999999999999999999888889999999999999999887664
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.57 E-value=3.3e-14 Score=144.79 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh---cC
Q 044927 356 ENWSVGQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD---SD 423 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~---~d 423 (467)
..+|.||+|++++|++++ .+|++++||||+++||+.....+.+.+.+. +..+++++|+.+.+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 468999999999999985 799999999999999999999999888753 4588999998876554 46
Q ss_pred EEEEEeCCEE
Q 044927 424 MFMVLSYGEL 433 (467)
Q Consensus 424 ~i~vl~~G~i 433 (467)
+++.+++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=3.9e-14 Score=133.77 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=89.2
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc--ccH
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR--GSV 312 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~--~tv 312 (467)
+-+|++++=..+.+++|.||||+||||+++.+.. .. +..|...... ...++|..|...-+. .|+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 4455555422237899999999999999999983 33 4556654332 124677777543221 122
Q ss_pred HHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927 313 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392 (467)
Q Consensus 313 ~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~ 392 (467)
.+++ ..| .-+-||+++|++++.+|+++|||||++|+|+..
T Consensus 86 ~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 86 SSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred hhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 2222 111 234589999999999999999999999999975
Q ss_pred -HHHHHHHHHHHC-C---CceEEEEccChhHHhhc
Q 044927 393 -DAILQRIIREEF-P---GSTVITVAHRVPTITDS 422 (467)
Q Consensus 393 -~~~i~~~l~~~~-~---~~tvi~itH~l~~~~~~ 422 (467)
.......++.+. . +.++|++||+++.++..
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 444445555542 2 24899999999987753
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.52 E-value=2.2e-13 Score=140.76 Aligned_cols=174 Identities=20% Similarity=0.254 Sum_probs=115.3
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe---CCC-----CCHHHHhcccEEEcC--CC
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD---ICS-----MGLKDLRTKLSIIPQ--EP 305 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~---i~~-----~~~~~~r~~i~~v~Q--~~ 305 (467)
.+++++ +++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|++ +.+ ++...+++.+.++.+ +|
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~ 225 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP 225 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC
Confidence 489999 9999999999999999999999999999999999999996543 442 344457778888865 22
Q ss_pred ccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCC-hhHHHH-HHHHHHhcCCCCEEEeeC
Q 044927 306 TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS-VGQRQL-FCLGRVLLKRNRILVLDE 383 (467)
Q Consensus 306 ~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS-gGq~Qr-l~iARal~~~p~iliLDE 383 (467)
.+ +++..+...+.+.++... .|.|-.+-- .+++ --|.|| +++ .+.+||
T Consensus 226 ~~-----------------~r~~~~~~a~~iAEyfr~--~g~~Vll~~--Dsltr~A~A~rEisl---~~ge~P------ 275 (438)
T PRK07721 226 AL-----------------MRIKGAYTATAIAEYFRD--QGLNVMLMM--DSVTRVAMAQREIGL---AVGEPP------ 275 (438)
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHH--CCCcEEEEE--eChHHHHHHHHHHHH---hcCCCC------
Confidence 21 111111111111222221 132221110 0111 001111 111 123443
Q ss_pred CCCCCCHHHHHHHHHHHHHHC---CCc-----eEEEEccChhHHhhcCEEEEEeCCEEEEecChhh
Q 044927 384 ATASIDSATDAILQRIIREEF---PGS-----TVITVAHRVPTITDSDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 384 pts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~ 441 (467)
.|+|+||.....+.+.+++.. +|. ||++.+|+++. ..||++.++.+|+|+.+++..+
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 578999999999999998864 465 99999999985 6699999999999999987654
No 426
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.51 E-value=1.6e-14 Score=155.97 Aligned_cols=91 Identities=18% Similarity=0.324 Sum_probs=80.3
Q ss_pred hCCCcccccccCCC------CCCChhHHHHHHHHHHhc----------CCCCEEEeeCCC-CCCCHHHHHHHHHHHHHHC
Q 044927 342 RLPMLLDSSVSDEG------ENWSVGQRQLFCLGRVLL----------KRNRILVLDEAT-ASIDSATDAILQRIIREEF 404 (467)
Q Consensus 342 ~l~~g~~t~v~~~g------~~LSgGq~Qrl~iARal~----------~~p~iliLDEpt-s~LD~~~~~~i~~~l~~~~ 404 (467)
.+|.++++.+++.| .+||||||||++|||||+ .+|+++|||||| ++||+.+...+.+.|.+.
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~- 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL- 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-
Confidence 45777777777766 689999999999999987 599999999998 789999999999999988
Q ss_pred CCceEEEEccChhHHhhcCEEEEEeC-CEE
Q 044927 405 PGSTVITVAHRVPTITDSDMFMVLSY-GEL 433 (467)
Q Consensus 405 ~~~tvi~itH~l~~~~~~d~i~vl~~-G~i 433 (467)
++.|+|+|||+......||++++|++ |+.
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 78999999999888888999999986 543
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.50 E-value=2.8e-14 Score=131.87 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHC--CCceEEEEccChhHHhhcCE
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ-RIIREEF--PGSTVITVAHRVPTITDSDM 424 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~l~~~~~~d~ 424 (467)
..+|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++... .++++|++||+.+....+|+
T Consensus 60 s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 5678888874333332 3499999999999999998766654 4445443 37899999999986666764
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.48 E-value=7.3e-14 Score=154.08 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=97.3
Q ss_pred cEEEEeEEEEeCCCCCceec-----ceeEEEeCC-cEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHH
Q 044927 220 RIELEDLKVRYRPNTPLVLK-----GITCTFKEG-TRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLK 292 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~-----~isl~i~~G-e~~~ivG~sGsGKSTll~~l~gl-~~p~~G~i~i~g~~i~~~~~~ 292 (467)
.+.++++.. |.++ .+|+++.++ ++++|.||||+||||+++++.|. +.+..|
T Consensus 295 ~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------- 352 (771)
T TIGR01069 295 KIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------- 352 (771)
T ss_pred CEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC---------------
Confidence 467766543 2343 378888877 99999999999999999999987 333333
Q ss_pred HHhcccEEEcCCCc-cccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 293 DLRTKLSIIPQEPT-LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 293 ~~r~~i~~v~Q~~~-lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
.+||.... .+ .+.+++. ....+++ .+ .++-.++|+|++|+..++++
T Consensus 353 ------~~Vpa~~~~~~--~~~d~i~--~~i~~~~------------si-----------~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 353 ------IPIPANEHSEI--PYFEEIF--ADIGDEQ------------SI-----------EQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred ------CCccCCccccc--cchhhee--eecChHh------------HH-----------hhhhhHHHHHHHHHHHHHHh
Confidence 14444321 11 1122221 0111110 01 11225689999999999988
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHH-HHHHHH-CCCceEEEEccChhHHh
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQ-RIIREE-FPGSTVITVAHRVPTIT 420 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~-~~~~tvi~itH~l~~~~ 420 (467)
+ .+|+++|||||++|+||.....+. ..++.+ ..++++|++||..+...
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 7 789999999999999999877774 445443 35889999999987643
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.43 E-value=2.6e-13 Score=146.06 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=71.8
Q ss_pred CCCChhHHHHHHHHHHhcCC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCC
Q 044927 356 ENWSVGQRQLFCLGRVLLKR----NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYG 431 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G 431 (467)
..|||||+||++|||+++.. |+++||||||++||+.+...+.+.|++..+++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999985 69999999999999999999999999987789999999999999889999999987
Q ss_pred E
Q 044927 432 E 432 (467)
Q Consensus 432 ~ 432 (467)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.43 E-value=1.2e-13 Score=130.49 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhcCCCCEEEeeCCC-----CCCCHHHHHHHHHHHHHH
Q 044927 361 GQRQLFCLGRVLLKRNRILVLDEAT-----ASIDSATDAILQRIIREE 403 (467)
Q Consensus 361 Gq~Qrl~iARal~~~p~iliLDEpt-----s~LD~~~~~~i~~~l~~~ 403 (467)
-|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 3999999999999999999999999 999999999999999886
No 431
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.43 E-value=1.1e-13 Score=137.42 Aligned_cols=173 Identities=24% Similarity=0.315 Sum_probs=111.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC--ccccccHHHhcCcCCCC-
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLGMY- 322 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~--~lf~~tv~enl~~~~~~- 322 (467)
.+|+..++||.||-||||-++.++|-.+|.-|.-- ++ .+|..-++|.--.- ..|.--+.+|+.-....
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p--------p~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP--------PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC--------cchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 68999999999999999999999999999877531 11 11222222211000 01111223333210000
Q ss_pred CHHHHHHH------------HHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927 323 SDNEIWEA------------MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390 (467)
Q Consensus 323 ~~~~~~~~------------~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~ 390 (467)
.-+.+-++ .+.-.....+..+. ++.........||||+-||.+||.+.++++++.++|||.+-||.
T Consensus 169 yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~--L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDV 246 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLD--LNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH--HhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchH
Confidence 00000000 11111112222211 22233334578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEe
Q 044927 391 ATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLS 429 (467)
Q Consensus 391 ~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~ 429 (467)
+.+..-...|+.+ ..++-+|+|.|+++.+.. +|-|.++.
T Consensus 247 KQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 247 KQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred HHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9998888889886 458999999999999886 88888886
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.39 E-value=9e-13 Score=140.95 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=71.0
Q ss_pred CCChhHHHHHHHHHHhcC----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 357 NWSVGQRQLFCLGRVLLK----RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
.+||||+||++|||+++. +|+++|||||++|||+.+...+.+.+++..++.|+|+|||++..+..||+.++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 579999999999999996 6899999999999999999999999999877899999999999988899999999854
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.36 E-value=4e-12 Score=120.52 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=84.8
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 313 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 313 (467)
..+.+|+++++++|++++|.||||+||||+++.+++ .+.+..|...... . -.+++..|=.. .....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i~~--~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSVLT--RMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceEEE--EecCc
Confidence 358999999999999999999999999999999999 6777788764432 1 12444333111 11112
Q ss_pred HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927 314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393 (467)
Q Consensus 314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~ 393 (467)
|++... ...|. .+-+|++-.---+.+|+++|||||.+|.|+...
T Consensus 85 d~~~~~----------------~StF~--------------------~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQHG----------------MSTFM--------------------VELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred cccccc----------------cchHH--------------------HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 222110 00010 111222222222457999999999888876544
Q ss_pred HHH-HHHHHHHC--CCceEEEEccChhHHhh
Q 044927 394 AIL-QRIIREEF--PGSTVITVAHRVPTITD 421 (467)
Q Consensus 394 ~~i-~~~l~~~~--~~~tvi~itH~l~~~~~ 421 (467)
..+ ...++.+. .++|+|++||+.+....
T Consensus 129 ~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 129 IAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 433 33333322 47899999999987553
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.30 E-value=2.2e-12 Score=117.94 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=63.2
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDE--ATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGEL 433 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDE--pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i 433 (467)
..+||+++-+..+++..+.+|+++++|| |+.++|+...+.+.+.+ ..++++|+++|+-.....+|+|..+.+|+|
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 4689999999999999999999999999 55566655555554444 247899999999655567999999999999
Q ss_pred EEe
Q 044927 434 VEY 436 (467)
Q Consensus 434 v~~ 436 (467)
.+.
T Consensus 154 ~~~ 156 (174)
T PRK13695 154 YEL 156 (174)
T ss_pred EEE
Confidence 876
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.30 E-value=7.9e-12 Score=138.43 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=60.4
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH-HHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI-IREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
.++|+|++|++.|++++ .+|+++|||||++|+||.....+... +..+ ..++++|++||..+.... +|+..++ ++.
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~ 466 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE-NAS 466 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEE
Confidence 67899999999999999 89999999999999999887766543 4443 347899999999887765 4554443 444
Q ss_pred EE
Q 044927 433 LV 434 (467)
Q Consensus 433 iv 434 (467)
+.
T Consensus 467 ~~ 468 (782)
T PRK00409 467 VE 468 (782)
T ss_pred EE
Confidence 43
No 436
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.28 E-value=1.8e-11 Score=130.51 Aligned_cols=96 Identities=25% Similarity=0.319 Sum_probs=85.1
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEE
Q 044927 351 VSDEGENWSVGQRQLFCLGRVLLKR--NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 351 v~~~g~~LSgGq~Qrl~iARal~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v 427 (467)
+.....+|||||.||+-||.-+-.+ -=+++||||+.||=+.--.++.+.|++++ .|.|+|+|.|+.++++.||+|+=
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iID 554 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIID 554 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEe
Confidence 4566789999999999999999776 35789999999999988888888888865 49999999999999999999998
Q ss_pred E------eCCEEEEecChhhHhccC
Q 044927 428 L------SYGELVEYDLPSKLMETN 446 (467)
Q Consensus 428 l------~~G~iv~~g~~~~l~~~~ 446 (467)
| ..|+|+++|+|+++++..
T Consensus 555 iGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 555 IGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred eCCCCCcCCCEEEEccCHHHHHhCC
Confidence 8 478999999999999754
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.28 E-value=3.1e-11 Score=115.40 Aligned_cols=158 Identities=12% Similarity=0.188 Sum_probs=89.8
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHH-HHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTL-ISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTl-l~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
+.++++...+++ .+++|+++.|.|++||||||+ ++.+.++.++....+++... .++.++.+++.
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~~~~~~ 72 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEFIKQMM 72 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHH
Confidence 556666655532 279999999999999999999 68999887765444444421 11122111110
Q ss_pred EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc----CC
Q 044927 300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KR 375 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~----~~ 375 (467)
++ + .. ++++... ..+. .+. -...+|+++.++-.+.+.+- .+
T Consensus 73 ---------------~~---g-~~------------~~~~~~~--~~l~-~~~-~~~~~~~~~~~~~~l~~il~~~~~~~ 117 (230)
T PRK08533 73 ---------------SL---G-YD------------INKKLIS--GKLL-YIP-VYPLLSGNSEKRKFLKKLMNTRRFYE 117 (230)
T ss_pred ---------------Hh---C-Cc------------hHHHhhc--CcEE-EEE-ecccccChHHHHHHHHHHHHHHHhcC
Confidence 00 0 00 0000000 0000 000 00124566555544444433 36
Q ss_pred CCEEEeeCCCCCC----CHHHHHHHHHHHHHHC-CCceEEEEccChhHH--------hh-cCEEEEEe
Q 044927 376 NRILVLDEATASI----DSATDAILQRIIREEF-PGSTVITVAHRVPTI--------TD-SDMFMVLS 429 (467)
Q Consensus 376 p~iliLDEpts~L----D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~--------~~-~d~i~vl~ 429 (467)
|+++++||||+++ |+...+.+.+.++.+. .++|+++ ||+.... +. ||-|+.|+
T Consensus 118 ~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 118 KDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 9999999999999 7777777888887764 3676655 5554321 22 68888887
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.26 E-value=8.4e-12 Score=124.53 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=99.1
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 320 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~ 320 (467)
+++.+++|+.++|+||+|||||||+++|+++++|..|.+.++. ..++.... +..+.++.+.. -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~----------~~~-- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKG----------GQG-- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCC----------CCC--
Confidence 4567889999999999999999999999999999999888752 33332211 11122111100 000
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHH
Q 044927 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l 400 (467)
+++....-.++++|-.+|+++++|||.+ ....+.+
T Consensus 202 --------------------------------------~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 202 --------------------------------------LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred --------------------------------------cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 0000112245567788999999999996 2344555
Q ss_pred HHHCCC-ceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927 401 REEFPG-STVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 401 ~~~~~~-~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+....| .+++.++|..+.....||+..|..|++...|.+.+.+
T Consensus 237 ~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 554444 4679999999977779999999999999999888876
No 439
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=1.8e-11 Score=140.82 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=70.7
Q ss_pred CCCCCChhHHHHHHHHHHhcC----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-
Q 044927 354 EGENWSVGQRQLFCLGRVLLK----------RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD- 421 (467)
Q Consensus 354 ~g~~LSgGq~Qrl~iARal~~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~- 421 (467)
...+|||||++|++||+||+. +|++|||||||++||+.+...+.+.|..+. .|++|++|||.++....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 457899999999999999985 799999999999999999999999998864 58999999999998876
Q ss_pred cCEEEEEeCC
Q 044927 422 SDMFMVLSYG 431 (467)
Q Consensus 422 ~d~i~vl~~G 431 (467)
+|+|.|++.|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 8999999864
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.21 E-value=6.6e-11 Score=109.01 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=60.6
Q ss_pred ccCCCCCCChhHHH------HHHHHHHhcCCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHC-CCceEEEEccChhH--
Q 044927 351 VSDEGENWSVGQRQ------LFCLGRVLLKRNRILVLDEATASID---SATDAILQRIIREEF-PGSTVITVAHRVPT-- 418 (467)
Q Consensus 351 v~~~g~~LSgGq~Q------rl~iARal~~~p~iliLDEpts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-- 418 (467)
.......+|+|++| +...+.+...+|+++++|||++.+| ......+.+.++... .|.|+|+++|....
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 33444678999998 4444555567999999999999999 666777777776643 48899999998764
Q ss_pred -------Hhh-cCEEEEEeC
Q 044927 419 -------ITD-SDMFMVLSY 430 (467)
Q Consensus 419 -------~~~-~d~i~vl~~ 430 (467)
+.. ||.|+.|+.
T Consensus 145 ~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred cccCcCceeEeeeEEEEEEE
Confidence 444 899999973
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.20 E-value=1.1e-10 Score=120.14 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=117.0
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
+.++-++++..|..+ ..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|+.-.
T Consensus 129 ~~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~----------- 195 (432)
T PRK06793 129 HAFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR----------- 195 (432)
T ss_pred CchheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----------
Confidence 346777888777643 3478885 999999999999999999999999999999999988877664321
Q ss_pred EEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc-----
Q 044927 299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----- 373 (467)
Q Consensus 299 ~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~----- 373 (467)
+++|.+. ..+...++. .+.+=..-.+-|.|+|+|.+.+.+..
T Consensus 196 ------------ev~e~~~-----------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 196 ------------EVKDFIR-----------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred ------------cHHHHHH-----------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2222221 001110110 01111222567999999999999887
Q ss_pred --CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927 374 --KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 374 --~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g 437 (467)
.++-++++|+||...|+. +.+...+.+.. .|.+..+.+|-....+.+-+ .++|.|...+
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~ 304 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIY 304 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEE
Confidence 789999999999999996 44554555543 47888888885555555544 4688886654
No 442
>PRK01156 chromosome segregation protein; Provisional
Probab=99.20 E-value=4.2e-11 Score=136.18 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=66.8
Q ss_pred CCCCCChhHHHHHHH------HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CC--C-ceEEEEccChhHHhhcC
Q 044927 354 EGENWSVGQRQLFCL------GRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FP--G-STVITVAHRVPTITDSD 423 (467)
Q Consensus 354 ~g~~LSgGq~Qrl~i------ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~--~-~tvi~itH~l~~~~~~d 423 (467)
.+..|||||++|++| ||+++.+|++++|||||++||+.....+.+.+... .. + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 59999999999999999999999999988888753 22 3 48999999999988899
Q ss_pred EEEEEe
Q 044927 424 MFMVLS 429 (467)
Q Consensus 424 ~i~vl~ 429 (467)
+++.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 443
>PRK03918 chromosome segregation protein; Provisional
Probab=99.19 E-value=4.1e-11 Score=136.14 Aligned_cols=76 Identities=25% Similarity=0.237 Sum_probs=66.9
Q ss_pred CCCCChhHHH------HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEE
Q 044927 355 GENWSVGQRQ------LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 355 g~~LSgGq~Q------rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v 427 (467)
...|||||+| |++|||+++.+|+++||||||++||+.....+.+.|.... .+.|+|+|||+.+....||++++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence 3579999999 5666678899999999999999999999999999998754 36799999999988778999999
Q ss_pred EeC
Q 044927 428 LSY 430 (467)
Q Consensus 428 l~~ 430 (467)
|+.
T Consensus 866 l~~ 868 (880)
T PRK03918 866 VSL 868 (880)
T ss_pred EEe
Confidence 983
No 444
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.19 E-value=1.2e-11 Score=126.75 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=56.4
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcccEEEcCCC
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEP 305 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 305 (467)
.+|+++|+++++||+++|+||||||||||++ .|+.+|++| +|.++|.++...+..++...- +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 4899999999999999999999999999999 788888888 799999999887655433211 788853
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.14 E-value=6.5e-11 Score=138.12 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=68.9
Q ss_pred CCCCCCChhHHHHHHHHHHh----cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927 353 DEGENWSVGQRQLFCLGRVL----LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL 428 (467)
Q Consensus 353 ~~g~~LSgGq~Qrl~iARal----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl 428 (467)
.....|||||+||++|||++ +++|+++||||||++||+.+...+.+.|....++.++|+|||++..+..||+++.+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 34568999999999999998 47789999999999999999999999998876678999999999998889998755
Q ss_pred e
Q 044927 429 S 429 (467)
Q Consensus 429 ~ 429 (467)
.
T Consensus 1165 ~ 1165 (1179)
T TIGR02168 1165 T 1165 (1179)
T ss_pred e
Confidence 4
No 446
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=4.2e-10 Score=106.43 Aligned_cols=138 Identities=13% Similarity=0.095 Sum_probs=81.9
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVR 313 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~ 313 (467)
..+-+|++|+.++|++++|.||||+||||+++.+....-... -|..+. .+ +..++++. .+|. ....
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-----~G~~vp---a~--~~~i~~~~---~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-----MGMDVP---AK--SMRLSLVD---RIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-----cCCccC---cc--ccEecccc---EEEEecCcc
Confidence 358899999999999999999999999999999876532210 010000 00 01111111 1111 1222
Q ss_pred HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927 314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393 (467)
Q Consensus 314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~ 393 (467)
|++......-.. |-++++-.-..+.+|+++|||||.+|+|+...
T Consensus 84 d~~~~~~StF~~------------------------------------e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKGESTFMV------------------------------------ELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccCcchHHH------------------------------------HHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 333211000011 11222222222357999999999999999876
Q ss_pred HHHHHH-HHHHCC--CceEEEEccChhHHhh
Q 044927 394 AILQRI-IREEFP--GSTVITVAHRVPTITD 421 (467)
Q Consensus 394 ~~i~~~-l~~~~~--~~tvi~itH~l~~~~~ 421 (467)
..+... ++.+.+ +.++|++||..+....
T Consensus 128 ~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 128 YAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 666665 444333 7899999999988764
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.10 E-value=5.6e-10 Score=99.62 Aligned_cols=129 Identities=20% Similarity=0.129 Sum_probs=77.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHH
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 329 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~ 329 (467)
++.|.||+|+||||+++.+++...+..|.+.+-+.+... ...+ ++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhh----------
Confidence 368999999999999999999887766666554432211 1111 000000
Q ss_pred HHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCC----------CHHHHHHHHHH
Q 044927 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI----------DSATDAILQRI 399 (467)
Q Consensus 330 ~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~L----------D~~~~~~i~~~ 399 (467)
... ..+... ..+.......+.++.++++.+++...+|+++++||+++-+ |....+.+.+.
T Consensus 50 --~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 50 --SLK-------GALDNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred --hhc-------cccccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 000 000000 0111111223455566788899999999999999999544 44445566555
Q ss_pred HHHHC-CCceEEEEccChhHH
Q 044927 400 IREEF-PGSTVITVAHRVPTI 419 (467)
Q Consensus 400 l~~~~-~~~tvi~itH~l~~~ 419 (467)
..... .+.|+|+++|.....
T Consensus 120 ~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHhcCCceEEEEEecCCcc
Confidence 55543 489999999977543
No 448
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.10 E-value=1.7e-10 Score=109.92 Aligned_cols=64 Identities=23% Similarity=0.346 Sum_probs=53.0
Q ss_pred CCCChhHHHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHH
Q 044927 356 ENWSVGQRQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTI 419 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~ 419 (467)
..+|.|++|.+.++-++...+ .++++|||-++|.|...+.+.+.+.+..+ +.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999998888776 89999999999999999999999987665 78999999998764
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.09 E-value=1.1e-09 Score=122.67 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=58.4
Q ss_pred hcCCCCEEEeeCCCCCC-CHHHHHHHHHHHHHH-CCCceEEEEccChhHHh----------hcCEEEEEeCCEEEEecCh
Q 044927 372 LLKRNRILVLDEATASI-DSATDAILQRIIREE-FPGSTVITVAHRVPTIT----------DSDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 372 l~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~----------~~d~i~vl~~G~iv~~g~~ 439 (467)
+..+|+++++|||+.+| |+...+.+.+.++.. +.+.+++++||+++.+. .||+.++|.+|++.+.|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 35799999999999999 689999999999875 45889999999998763 5999999999998776643
No 450
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.06 E-value=3e-10 Score=132.65 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=68.9
Q ss_pred CCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927 356 ENWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
..||||||++++||++++ .+||++|||||+++||+.....+.+.|.+..++.++|+|||+...+..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 479999999999999998 478999999999999999999999999988777889999999998888999987764
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.04 E-value=4.2e-10 Score=105.16 Aligned_cols=118 Identities=23% Similarity=0.256 Sum_probs=74.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHH
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW 328 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~ 328 (467)
.+.|+||+||||||+++.+++.+++. .|.|.....++. +.. ....+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeecc-----------------------
Confidence 68899999999999999999888754 567665443321 100 00111111100
Q ss_pred HHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCce
Q 044927 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGST 408 (467)
Q Consensus 329 ~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 408 (467)
+|.....++ =+++++|..+|+++++|||. |+++-.. .++....|.+
T Consensus 56 ----------------------vg~~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~---~l~~a~~G~~ 101 (198)
T cd01131 56 ----------------------VGLDTLSFE------NALKAALRQDPDVILVGEMR---DLETIRL---ALTAAETGHL 101 (198)
T ss_pred ----------------------cCCCccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHH---HHHHHHcCCE
Confidence 000001111 14788999999999999996 6654333 3434445889
Q ss_pred EEEEccChhHHhhcCEEEEE
Q 044927 409 VITVAHRVPTITDSDMFMVL 428 (467)
Q Consensus 409 vi~itH~l~~~~~~d~i~vl 428 (467)
++.++|..+.....||++.+
T Consensus 102 v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 102 VMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred EEEEecCCcHHHHHhHHHhh
Confidence 99999998876666776555
No 452
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.01 E-value=7.8e-10 Score=127.00 Aligned_cols=78 Identities=22% Similarity=0.165 Sum_probs=67.4
Q ss_pred CCCCCCChhHHHHHHHHHHhcC--------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-c
Q 044927 353 DEGENWSVGQRQLFCLGRVLLK--------RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-S 422 (467)
Q Consensus 353 ~~g~~LSgGq~Qrl~iARal~~--------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~ 422 (467)
....+|||||+|+++|||||.. +|++|+|||||++||+.+...+++.|..+. .|+||++|||....... .
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 3457899999999999999995 899999999999999999999999998864 58999999997766665 5
Q ss_pred CEEEEEeC
Q 044927 423 DMFMVLSY 430 (467)
Q Consensus 423 d~i~vl~~ 430 (467)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777654
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.97 E-value=2e-08 Score=86.42 Aligned_cols=117 Identities=32% Similarity=0.360 Sum_probs=79.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHH
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 325 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~ 325 (467)
++..+.|+||+|+||||+++.+++.+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467899999999999999999999887654 4455544322211111000
Q ss_pred HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH-------
Q 044927 326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR------- 398 (467)
Q Consensus 326 ~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~------- 398 (467)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 011112234567888888999999988899999999999999887765543
Q ss_pred HHHHHCCCceEEEEccC
Q 044927 399 IIREEFPGSTVITVAHR 415 (467)
Q Consensus 399 ~l~~~~~~~tvi~itH~ 415 (467)
.......+..+|.++|.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEEeCC
Confidence 22223456788888884
No 454
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.94 E-value=3.9e-09 Score=94.97 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=62.7
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
...|-||-=.--+.|.+ ++.-|+|||||-|+|.|.-+-.+...|+++. .|.-+|+.||.+=.+.. --+|+-++.+.+
T Consensus 128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 34599998766667766 4568999999999999999999999998864 58899999999877665 568888887764
No 455
>PRK02224 chromosome segregation protein; Provisional
Probab=98.94 E-value=1.6e-09 Score=123.08 Aligned_cols=76 Identities=24% Similarity=0.307 Sum_probs=66.5
Q ss_pred CCCChhHHH------HHHHHHHhcCC-----C-CEEEeeCCCCCCCHHHHHHHHHHHHHHCC-C-ceEEEEccChhHHhh
Q 044927 356 ENWSVGQRQ------LFCLGRVLLKR-----N-RILVLDEATASIDSATDAILQRIIREEFP-G-STVITVAHRVPTITD 421 (467)
Q Consensus 356 ~~LSgGq~Q------rl~iARal~~~-----p-~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~~~~ 421 (467)
..||||||| |+++|+++..+ | +++||||||++||+.....+.+.|..... + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 2 67999999999999999999998887643 4 489999999999988
Q ss_pred cCEEEEEeCC
Q 044927 422 SDMFMVLSYG 431 (467)
Q Consensus 422 ~d~i~vl~~G 431 (467)
||+++++...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999754
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.93 E-value=1.6e-08 Score=97.00 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHHhcC--CCCEEEeeCCCCCCC---HHHHHHHHHHHHHH-CCCceEEEEccChhH-------Hhh-c
Q 044927 357 NWSVGQRQLFCLGRVLLK--RNRILVLDEATASID---SATDAILQRIIREE-FPGSTVITVAHRVPT-------ITD-S 422 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~--~p~iliLDEpts~LD---~~~~~~i~~~l~~~-~~~~tvi~itH~l~~-------~~~-~ 422 (467)
..|.++++.+..++..+. +|+++++||||+.+| ......+.+.++.. ..++|+++++|.... +.. +
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 346788999999999997 999999999996544 44334444445443 357899999997653 233 6
Q ss_pred CEEEEEeC
Q 044927 423 DMFMVLSY 430 (467)
Q Consensus 423 d~i~vl~~ 430 (467)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 77777763
No 457
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.91 E-value=3.7e-09 Score=99.07 Aligned_cols=66 Identities=27% Similarity=0.426 Sum_probs=54.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHH
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 313 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 313 (467)
++|++++|+||||||||||++.|++.++ |..|+ ++|.++..++..++++. +.|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 58888877777777764 3566777778887
Q ss_pred Hhc
Q 044927 314 TNL 316 (467)
Q Consensus 314 enl 316 (467)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 774
No 458
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.89 E-value=2.9e-09 Score=109.74 Aligned_cols=86 Identities=19% Similarity=0.289 Sum_probs=70.6
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc---CEeCCCCCHHH-
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID---GLDICSMGLKD- 293 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~---g~~i~~~~~~~- 293 (467)
.+.++.++++..|..+ ..+++.++ ++.+||+++|+||||||||||++.|+|+.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 4568999999999754 35888885 999999999999999999999999999999999999885 56665544332
Q ss_pred ---HhcccEEEcCCC
Q 044927 294 ---LRTKLSIIPQEP 305 (467)
Q Consensus 294 ---~r~~i~~v~Q~~ 305 (467)
+++.+++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 235799999954
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.84 E-value=1.3e-08 Score=103.16 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceec-----------ceeEEEeCCcEEEE
Q 044927 185 NIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK-----------GITCTFKEGTRVGV 253 (467)
Q Consensus 185 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~-----------~isl~i~~Ge~~~i 253 (467)
...+.+|++++++.++... . ++. ...+.++|+||+|.|++.. .+|+ |+++.|.+|++++|
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~-----~-~~e--~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNG-----D-DPE--KAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred ccccHhHHHHHhCCCccCC-----C-Ccc--ccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 3467899999998754421 1 111 1245799999999998654 6897 99999999999999
Q ss_pred EcCCCCcHHHHHHHHhcCCCCC
Q 044927 254 VGRTGSGKTTLISALFRLVEPE 275 (467)
Q Consensus 254 vG~sGsGKSTll~~l~gl~~p~ 275 (467)
+||+|||||||++.|.+.+...
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred ECCCCCChhHHHHHHHHhhccc
Confidence 9999999999999999987643
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.78 E-value=8.2e-10 Score=116.90 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=97.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--hcCCCCCccEEEEcCEeCCCCCHHHHhc---ccEEEcCCCccccccHHHhcCc
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENGRILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l--~gl~~p~~G~i~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
-+++|..+.|.||+|||||||..-. .|..++.+.-+++... -+++++++ .+|+-.++..- .+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4789999999999999999999876 3555555666777653 23444433 45555443210 011111
Q ss_pred CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH--HHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG--RVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA--Ral~~~p~iliLDEpts~LD~~~~~~i 396 (467)
............++..++.+.++.++ ..+|+|++||+.|+ .++..+|+.. +..++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecCchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 00011111112334455666665554 56799999999999 6666655433 4556677
Q ss_pred HHHHHHH-CCCceEEEEccChhH--------H-hh-cCEEEEEe
Q 044927 397 QRIIREE-FPGSTVITVAHRVPT--------I-TD-SDMFMVLS 429 (467)
Q Consensus 397 ~~~l~~~-~~~~tvi~itH~l~~--------~-~~-~d~i~vl~ 429 (467)
.+.++.+ ..|+|+|+++|+.+. + +. ||.|+.|+
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 7777664 358999999998753 2 33 89999987
No 461
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.77 E-value=5.4e-08 Score=98.82 Aligned_cols=171 Identities=22% Similarity=0.246 Sum_probs=116.0
Q ss_pred EEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCC
Q 044927 226 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 304 (467)
Q Consensus 226 vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 304 (467)
|++..++.. .+.+ +-|++| ++.|+|.+=-|||||+++|. |.|+.--| ||.+ ||--+
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE--------------~VVT~ 283 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE--------------FVVTD 283 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce--------------EEEEC
Confidence 667766543 3454 478999 99999999999999999997 78876555 5532 11111
Q ss_pred CccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927 305 PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384 (467)
Q Consensus 305 ~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp 384 (467)
+.-.. | .+ |--+..+.+++..||..||.|.||.- ---.+=||-.-|=-.|..|+=..+++||+||=
T Consensus 284 ~~avk--i--------rA---EDGR~V~~vDISpFI~~LP~g~dT~~-FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDED 349 (448)
T PF09818_consen 284 PDAVK--I--------RA---EDGRSVEGVDISPFINNLPGGKDTTC-FSTENASGSTSQAANIMEALEAGARLLLIDED 349 (448)
T ss_pred CCceE--E--------Ee---cCCceEeCccchHHHhhCCCCCCCCc-ccccCCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence 11000 0 00 00123345678899999999999873 22245699999999999999999999999999
Q ss_pred CCCC-----CHHHHHHH----------HHHHHHH--CCCceEEEEccCh-hHHhhcCEEEEEeCCEE
Q 044927 385 TASI-----DSATDAIL----------QRIIREE--FPGSTVITVAHRV-PTITDSDMFMVLSYGEL 433 (467)
Q Consensus 385 ts~L-----D~~~~~~i----------~~~l~~~--~~~~tvi~itH~l-~~~~~~d~i~vl~~G~i 433 (467)
||+- |...+..+ .+.++.+ ..|.++|+|+=-. ..+..||+|++|++=+-
T Consensus 350 tsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 350 TSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred ccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 9987 55445544 2223333 1365555555444 46777999999998653
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.71 E-value=9.6e-09 Score=107.24 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=47.4
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
+++.++.+++|+++++|||||+||||++..|++.+.+..|. ++++++++|+ |+.+..|++.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHH
Confidence 34455556789999999999999999999999988766663 1578888887 5556677774
No 463
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=1.3e-08 Score=104.85 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=61.8
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc---EEEEcCEeCCCCCHHHH------hcccEEEcCCCc
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG---RILIDGLDICSMGLKDL------RTKLSIIPQEPT 306 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G---~i~i~g~~i~~~~~~~~------r~~i~~v~Q~~~ 306 (467)
.+++++ |++.+|++++|+|+||||||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 489999 99999999999999999999999999999998863 34444545544332322 456899999987
Q ss_pred ccc-ccHHHhcC
Q 044927 307 LFR-GSVRTNLD 317 (467)
Q Consensus 307 lf~-~tv~enl~ 317 (467)
.+. .++.++..
T Consensus 223 ~~~rl~a~e~a~ 234 (434)
T PRK07196 223 PLMRIKATELCH 234 (434)
T ss_pred hhhhHHHHHHHH
Confidence 664 36666653
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.67 E-value=4.9e-07 Score=101.92 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=47.5
Q ss_pred HHHHhcCCCCEEEeeCCCCCC-CHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh
Q 044927 368 LGRVLLKRNRILVLDEATASI-DSATDAILQRIIREE-FPGSTVITVAHRVPTITD 421 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~ 421 (467)
|+|++..+|+++++|||+.+| |+...+.+.+.++.. +.+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688899999999999999999 788899999988875 358899999999997754
No 465
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=2.9e-08 Score=101.21 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHHHHhcC---------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh
Q 044927 357 NWSVGQRQLFCLGRVLLK---------RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT 420 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~---------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 420 (467)
.+|.||++++.||.+|+. +|+|||||||+|+||+.....+.+.|.+. +.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 579999999999999999 99999999999999999999999999754 679999999987654
No 466
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.63 E-value=3.1e-07 Score=95.39 Aligned_cols=176 Identities=18% Similarity=0.181 Sum_probs=105.5
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HH-----HhcccEEEcCCCcc
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KD-----LRTKLSIIPQEPTL 307 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~-----~r~~i~~v~Q~~~l 307 (467)
.+++++ +++.+|++++|+|+||+|||||++.|+|..+|+.|.+...|..-.++.. +. +++.+.++.+
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~---- 226 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT---- 226 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC----
Confidence 489999 9999999999999999999999999999999998887776654333210 00 0111111111
Q ss_pred ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCCh-hHHHHHHHHHHhcCCCCEEEeeCC--
Q 044927 308 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV-GQRQLFCLGRVLLKRNRILVLDEA-- 384 (467)
Q Consensus 308 f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSg-Gq~Qrl~iARal~~~p~iliLDEp-- 384 (467)
..+..-++...+.-.+-..++... .|.|-.+=- .+++- =|.|| .++ +.+.||
T Consensus 227 -----------~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~--DslTr~A~A~R-Eis---------l~~ge~P~ 281 (440)
T TIGR01026 227 -----------SDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLM--DSVTRFAMAQR-EIG---------LAAGEPPA 281 (440)
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEE--eChHHHHHHHH-HHH---------HhcCCCCc
Confidence 011112222222222223233332 244432210 01111 11111 111 123453
Q ss_pred CCCCCHHHHHHHHHHHHHHC-CCc-------eEEEEccChhHHhhcCEEEEEeCCEEEEecChhhH
Q 044927 385 TASIDSATDAILQRIIREEF-PGS-------TVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 385 ts~LD~~~~~~i~~~l~~~~-~~~-------tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 442 (467)
+.|.||.....+.+.+.+.. .++ ||++-+|++. -.-+|++.-+.+|+|+.+....+.
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhhC
Confidence 56899999888888887754 356 8888999983 224899999999999988766544
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.63 E-value=2.5e-08 Score=92.23 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=50.2
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 305 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 305 (467)
..+=+.+.+++|+.++|+|||||||||++++|+|+++|+.|.|.+.+..-...+ .+..++++.|.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~ 79 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPG 79 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecC
Confidence 345566778999999999999999999999999999999999999774322221 133456665543
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.61 E-value=7.5e-08 Score=92.62 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=35.3
Q ss_pred hcCCCCEEEeeCCCCC------CCHHHHHHHHHHHHHHC--CCceEEEEccCh
Q 044927 372 LLKRNRILVLDEATAS------IDSATDAILQRIIREEF--PGSTVITVAHRV 416 (467)
Q Consensus 372 l~~~p~iliLDEpts~------LD~~~~~~i~~~l~~~~--~~~tvi~itH~l 416 (467)
...+|+++|+| |+++ .|+.....+.+.+.+.. .++|+|+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7754 68888888888887743 389999999976
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.57 E-value=1.5e-07 Score=95.37 Aligned_cols=119 Identities=21% Similarity=0.216 Sum_probs=73.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCC
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 323 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~ 323 (467)
..++..+.|.||+||||||+++.+.+.+++ .+|+|..-..++.-. .....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 357889999999999999999999997763 467766544322100 00000011110
Q ss_pred HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE 403 (467)
Q Consensus 324 ~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 403 (467)
.+|..... -.-++++||-.+|+++++||+. |+++.....+ ..
T Consensus 176 --------------------------evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa 217 (343)
T TIGR01420 176 --------------------------EVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALT---AA 217 (343)
T ss_pred --------------------------ccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HH
Confidence 00100000 1234677888999999999997 8887765443 33
Q ss_pred CCCceEEEEccChhHHhhcCE
Q 044927 404 FPGSTVITVAHRVPTITDSDM 424 (467)
Q Consensus 404 ~~~~tvi~itH~l~~~~~~d~ 424 (467)
..|.+++.+.|..+.....+|
T Consensus 218 ~tGh~v~~T~Ha~~~~~~~~R 238 (343)
T TIGR01420 218 ETGHLVFGTLHTNSAAQTIER 238 (343)
T ss_pred HcCCcEEEEEcCCCHHHHHHH
Confidence 458889999998655443333
No 470
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.57 E-value=8.2e-08 Score=97.47 Aligned_cols=87 Identities=28% Similarity=0.318 Sum_probs=59.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC--Cc-cEEEEcCEeCCCCCHHHHhcccEEEcCCCc-----cccccHHHhcC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEP--EN-GRILIDGLDICSMGLKDLRTKLSIIPQEPT-----LFRGSVRTNLD 317 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----lf~~tv~enl~ 317 (467)
++|..++|+|||||||||++++|++.+.+ .+ +.|.....++ ++..+.+++..++++|... -|...+++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999843 33 4565544444 4666666666788888642 46677888775
Q ss_pred cCC------CCCHH-HHHHHHHH
Q 044927 318 PLG------MYSDN-EIWEAMEK 333 (467)
Q Consensus 318 ~~~------~~~~~-~~~~~~~~ 333 (467)
..+ +..+. .+..+++.
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHH
Confidence 332 22333 34456665
No 471
>PRK14079 recF recombination protein F; Provisional
Probab=98.57 E-value=1.3e-07 Score=96.01 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEE
Q 044927 357 NWSVGQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v 427 (467)
-+|+||++++++|+.|+ .+|++++||||++.||+.....+.+.+.... .++|..|+ .-..||+++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~~ 337 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTLR 337 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEEE
Confidence 57999999999999998 8999999999999999999999988886532 34444443 2345899999
Q ss_pred EeCCEEEEecC
Q 044927 428 LSYGELVEYDL 438 (467)
Q Consensus 428 l~~G~iv~~g~ 438 (467)
+++|++.-+.+
T Consensus 338 ~~~~~~~~~~~ 348 (349)
T PRK14079 338 IEAGVFTPEAP 348 (349)
T ss_pred EeccEecCCCC
Confidence 99998765444
No 472
>PRK01889 GTPase RsgA; Reviewed
Probab=98.54 E-value=5.8e-08 Score=98.76 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=64.7
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|++.+++.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566777788999999999999999999999999999999999998753221 2235679999999999987777666
Q ss_pred Cc
Q 044927 317 DP 318 (467)
Q Consensus 317 ~~ 318 (467)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 54
No 473
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.54 E-value=8.5e-09 Score=112.63 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
++++| +.|+||+|+||||+.+.+++...
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 45566 89999999999999999988553
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.53 E-value=4.7e-08 Score=91.15 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=59.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHH
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI 327 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~ 327 (467)
++||+||||||||||.+.|.+++ ..|.+.+-+.|--. .+....+...+...+ .....+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 64 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERKNNNYD--------------HPDAFDFDLL 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhccCCCC--------------CCCcccHHHH
Confidence 47999999999999999999988 34444444333110 000000000000000 0011122222
Q ss_pred HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390 (467)
Q Consensus 328 ~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~ 390 (467)
.+.+.. +-.+ ..+.....++|.|++++..+ .+.+|+++|+|+|+...++
T Consensus 65 ~~~l~~---------l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 65 ISHLQD---------LKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHH---------HHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 222222 1111 11222335678888776554 5688999999999999886
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.50 E-value=1.2e-07 Score=87.73 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 305 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 305 (467)
|++++|+||||||||||++.|++...| .+.+++..+........+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888888777655555667788888875
No 476
>PRK08149 ATP synthase SpaL; Validated
Probab=98.48 E-value=1.4e-07 Score=97.28 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=58.1
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---cEEEEcCEeCCCCCHHHHh----cccEEEcCC
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLR----TKLSIIPQE 304 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~---G~i~i~g~~i~~~~~~~~r----~~i~~v~Q~ 304 (467)
.+++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|..+|.++.++..+.++ +++++|+..
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 489999 9999999999999999999999999999999987 9999999988776554443 566777553
No 477
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.45 E-value=3.1e-07 Score=108.04 Aligned_cols=62 Identities=24% Similarity=0.240 Sum_probs=54.9
Q ss_pred CCCCCChhHHHHHH----HHHH--------hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChh
Q 044927 354 EGENWSVGQRQLFC----LGRV--------LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVP 417 (467)
Q Consensus 354 ~g~~LSgGq~Qrl~----iARa--------l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 417 (467)
....|||||||+++ +|++ +..+|++++|||||+++|+.+...+++.+.++ +.++|++||++-
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 35789999999996 5755 55899999999999999999999999999887 789999999874
No 478
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.41 E-value=7.6e-07 Score=101.50 Aligned_cols=78 Identities=24% Similarity=0.282 Sum_probs=67.5
Q ss_pred CCCCCChhHHHHHHHHHHh------cCC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhhcCE
Q 044927 354 EGENWSVGQRQLFCLGRVL------LKR--NRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITDSDM 424 (467)
Q Consensus 354 ~g~~LSgGq~Qrl~iARal------~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~d~ 424 (467)
...+|||||+=.++||-+| ..+ -++++|||||.+||+++...+.+.|..... +.+|++|||+-+....+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 4578999999877776665 355 699999999999999999999999998654 6999999999999999999
Q ss_pred EEEEeCC
Q 044927 425 FMVLSYG 431 (467)
Q Consensus 425 i~vl~~G 431 (467)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9988754
No 479
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.38 E-value=2e-06 Score=96.77 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=45.4
Q ss_pred CChhHHHHHHHHHHhcC--CCCEEEeeCC---CCCCCHHH-HHHHHHHHHHHCCCceEEEEccChhHHhhcCE
Q 044927 358 WSVGQRQLFCLGRVLLK--RNRILVLDEA---TASIDSAT-DAILQRIIREEFPGSTVITVAHRVPTITDSDM 424 (467)
Q Consensus 358 LSgGq~Qrl~iARal~~--~p~iliLDEp---ts~LD~~~-~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~ 424 (467)
+|--+.....++++|-. ++.++||||| |+.+|... ...+.+.+.+. .+++++++||..+....+++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK 738 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence 45555666667776654 8999999999 99999654 33455555442 25899999999665554543
No 480
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.37 E-value=8.4e-06 Score=91.76 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=41.5
Q ss_pred HhcCCCCEEEeeCCCCCCC-HHHHHHHHHHHHHHC-CCceEEEEccChhHH
Q 044927 371 VLLKRNRILVLDEATASID-SATDAILQRIIREEF-PGSTVITVAHRVPTI 419 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 419 (467)
.+..+|.++++|||...|| +...+.+.+.++..+ .+..++++||.++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567899999999999999 888888888888753 478999999998764
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.36 E-value=1.7e-06 Score=101.12 Aligned_cols=43 Identities=35% Similarity=0.495 Sum_probs=36.4
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEEcC
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDG 283 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g-l~~p~~G~i~i~g 283 (467)
+++..+.+++++|+|++|+|||||++.+.+ +....+|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 567778899999999999999999999954 4455689998876
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.33 E-value=4.5e-07 Score=83.10 Aligned_cols=53 Identities=26% Similarity=0.372 Sum_probs=40.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc-ccEEEcCCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KLSIIPQEP 305 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~ 305 (467)
+||+++++|+|||||||+++.|++++.| +.++|.++... ...|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 6999999999999999999999999887 58899877432 22332 345556654
No 483
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.32 E-value=2.9e-07 Score=86.54 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
++|++++|+||||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999999864
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.32 E-value=1e-06 Score=80.69 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=43.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE-----------cCEeCCCCCHHHH-----hcccEEEcCCCccccc
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-----------DGLDICSMGLKDL-----RTKLSIIPQEPTLFRG 310 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~lf~~ 310 (467)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+..++ .+.++.++|.+.++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 5555554544443 2347777776544443
No 485
>PLN02796 D-glycerate 3-kinase
Probab=98.29 E-value=2.8e-07 Score=92.05 Aligned_cols=61 Identities=25% Similarity=0.378 Sum_probs=50.5
Q ss_pred ceecceeEEE---eCCcE-----EEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhc
Q 044927 236 LVLKGITCTF---KEGTR-----VGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 236 ~~L~~isl~i---~~Ge~-----~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~ 296 (467)
.+++++++++ ++|+. +||+|++|||||||++.|.+++++. .|.|.+||..+...+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 4788888887 67777 9999999999999999999999875 588999998876655555554
No 486
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.28 E-value=4.6e-06 Score=83.45 Aligned_cols=159 Identities=18% Similarity=0.147 Sum_probs=104.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCC
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 321 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~ 321 (467)
+-|++| ++.|+|+|=-|||||+.+|. |-++.--| ||.+. +|.. ..+-... .+|..
T Consensus 238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE~-------------vVTd-~~lakae-ae~gr---- 293 (554)
T COG3044 238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRER-------------VVTD-VKLAKAE-AEEGR---- 293 (554)
T ss_pred cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCceE-------------EEeh-hhhhhhh-cccce----
Confidence 578999 99999999999999999997 44433222 33210 0110 0000000 01111
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH--------
Q 044927 322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD-------- 393 (467)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~-------- 393 (467)
...-.++..|++.||.|-+|.-.-.| .=||-+.|--.|=||+=...++|++||=+|+......
T Consensus 294 --------~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~e 364 (554)
T COG3044 294 --------CVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESE 364 (554)
T ss_pred --------eeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhc
Confidence 11223467799999977788754433 4599999999999999999999999999999843221
Q ss_pred --H---HHHHHHHHHCC-CceEEEEccChhH-HhhcCEEEEEeCCEEE
Q 044927 394 --A---ILQRIIREEFP-GSTVITVAHRVPT-ITDSDMFMVLSYGELV 434 (467)
Q Consensus 394 --~---~i~~~l~~~~~-~~tvi~itH~l~~-~~~~d~i~vl~~G~iv 434 (467)
+ .+.+.+.+... +.++|.+|--+.. ...+||+++|++-+-.
T Consensus 365 G~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 365 GERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred CcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 1 22333334433 3788888887765 4569999999987644
No 487
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.27 E-value=2.5e-06 Score=92.84 Aligned_cols=110 Identities=16% Similarity=0.238 Sum_probs=67.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------EEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENG--------RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G--------~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
..+.+.|+||+|+||||+++++.++..+..| -+.++|.++. ++...+. .+ +|. .+.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~--------~~-llg-~~~~~~-- 240 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT--------NP-LLG-SVHDPI-- 240 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh--------HH-hcC-CccHHH--
Confidence 3467999999999999999999998865444 4778876542 2222211 11 111 011100
Q ss_pred CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927 319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~ 398 (467)
.....+.++..++.+.... ....+||| +|+||| +..||+..+..+.+
T Consensus 241 -----~~~a~~~l~~~gl~~~~~g-----------~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 241 -----YQGARRDLAETGVPEPKTG-----------LVTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----HHHHHHHHHHcCCCchhcC-----------chhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 1112223344444332222 12456777 999999 79999999999999
Q ss_pred HHHH
Q 044927 399 IIRE 402 (467)
Q Consensus 399 ~l~~ 402 (467)
.+++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 9875
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.26 E-value=1e-06 Score=91.02 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=56.7
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 285 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~ 285 (467)
..++.++++..+..+ ..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 357788888888544 3489999 9999999999999999999999999999999999988877754
No 489
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.26 E-value=1.7e-06 Score=82.50 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=38.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHH---hcccEEEcCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQE 304 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~---r~~i~~v~Q~ 304 (467)
-+++|+.+.|.||+|||||||...++ ....+.++.+++... .+.+++ .+.+++.+|+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e----~~~~~i~~~~~~~g~~~~~ 76 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE----ESRESIIRQAAQFGMDFEK 76 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHhCCCHHH
Confidence 58999999999999999999988654 233455566777652 223332 3346666654
No 490
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.25 E-value=1.7e-06 Score=80.89 Aligned_cols=57 Identities=35% Similarity=0.473 Sum_probs=44.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcc
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 307 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 307 (467)
+++|+||+|||||||++.+.+.+++..| +.+...+.......++....++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999888655 55555566555555666677888988754
No 491
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=5.2e-06 Score=71.84 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC------CCceEEEEccChh
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF------PGSTVITVAHRVP 417 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~ 417 (467)
.+.....++...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4556667777889999999998765 5556667777777653 4678888888654
No 492
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.22 E-value=7.7e-06 Score=78.17 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=33.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcC-CCC------CccEEEEcCEe
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRL-VEP------ENGRILIDGLD 285 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl-~~p------~~G~i~i~g~~ 285 (467)
+++|+++.|.||+|||||||+..++.. ..| ..+.+++++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 789999999999999999999988732 334 37888888764
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.22 E-value=1e-06 Score=88.19 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=48.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------CHHHHhcccEEEcCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------GLKDLRTKLSIIPQEP 305 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~------~~~~~r~~i~~v~Q~~ 305 (467)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|.... .....+..+.+++|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE 177 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC
Confidence 56899999999999999999999999999889999988876432 2223355688888753
No 494
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.21 E-value=1.2e-06 Score=92.27 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=56.3
Q ss_pred EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287 (467)
Q Consensus 223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~ 287 (467)
++|++..|+. ..+++++++.+..|+.++++||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 4588888853 34899999999999999999999999999999999999999999999886653
No 495
>PTZ00035 Rad51 protein; Provisional
Probab=98.20 E-value=5.2e-06 Score=83.79 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=54.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-C-----CccEE-EEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVE-P-----ENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p-----~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
-+++|+++.|.||+|||||||+..++.... | ..|++ ++|+... ++++. +..++|.+.+...++.+|+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 478999999999999999999999886554 3 45666 7887543 34443 3444566556556788888
Q ss_pred CcCCCCCHHHH
Q 044927 317 DPLGMYSDNEI 327 (467)
Q Consensus 317 ~~~~~~~~~~~ 327 (467)
.+...++.++.
T Consensus 188 ~~~~~~~~e~~ 198 (337)
T PTZ00035 188 AYARAYNHEHQ 198 (337)
T ss_pred EEEccCCHHHH
Confidence 65444444433
No 496
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.18 E-value=1.2e-06 Score=90.75 Aligned_cols=70 Identities=27% Similarity=0.437 Sum_probs=53.4
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEE---cCEeCCCCCHHHHh---cccEEE-----cC
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILI---DGLDICSMGLKDLR---TKLSII-----PQ 303 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i---~g~~i~~~~~~~~r---~~i~~v-----~Q 303 (467)
.+++++ |++.+|++++|+|+||||||||++.|+|+.++ +.|.|.+ +|.++.++..+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 378887 99999999999999999999999999999854 4466766 44666555444443 235566 88
Q ss_pred CCc
Q 044927 304 EPT 306 (467)
Q Consensus 304 ~~~ 306 (467)
+|.
T Consensus 232 ~p~ 234 (442)
T PRK06315 232 SSQ 234 (442)
T ss_pred CHH
Confidence 774
No 497
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.17 E-value=2.7e-06 Score=85.00 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=49.2
Q ss_pred eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 044927 225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 285 (467)
Q Consensus 225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~ 285 (467)
.++..|..+ ..+++++ +++.+|++++|+|+||+|||||+++|+|...|+.|.+..-|.+
T Consensus 48 ~~~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 48 PIDEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred cceeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 334445433 3489999 9999999999999999999999999999999999888776644
No 498
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.15 E-value=4.7e-06 Score=77.08 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhH--H-hhcCEEEEEeCC
Q 044927 360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPT--I-TDSDMFMVLSYG 431 (467)
Q Consensus 360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~--~-~~~d~i~vl~~G 431 (467)
.|+-+|..||.++..+|+.+..+| +-+||...+.+.+.+.+... +.++++.+|.+.. + ..||++++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999988887 78999999999998887643 4799999999854 3 359999998875
No 499
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=6.1e-06 Score=83.91 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=32.8
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++++.++.+++|++++++||||+||||++..|++.+
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 577788889999999999999999999999999865
No 500
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.14 E-value=1.5e-06 Score=64.91 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=30.5
Q ss_pred ecceeEEEeC-CcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 044927 238 LKGITCTFKE-GTRVGVVGRTGSGKTTLISALFRLVEPEN 276 (467)
Q Consensus 238 L~~isl~i~~-Ge~~~ivG~sGsGKSTll~~l~gl~~p~~ 276 (467)
+++-.+++.+ |+.+.|.|||||||||++.++.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3445677775 57999999999999999999886665543
Done!