Query 044927
Match_columns 467
No_of_seqs 487 out of 2729
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.6E-84 5.6E-89 753.4 40.5 455 1-458 856-1318(1321)
2 4f4c_A Multidrug resistance pr 100.0 1E-82 3.6E-87 738.3 54.4 454 1-456 196-653 (1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 4.2E-81 1.4E-85 672.8 54.1 455 1-458 123-580 (587)
4 3b5x_A Lipid A export ATP-bind 100.0 1.4E-79 4.8E-84 661.1 58.4 452 1-457 125-580 (582)
5 3qf4_B Uncharacterized ABC tra 100.0 4.3E-81 1.5E-85 674.4 46.3 455 1-460 137-594 (598)
6 4a82_A Cystic fibrosis transme 100.0 8.1E-81 2.8E-85 670.0 47.0 452 1-455 121-575 (578)
7 3b60_A Lipid A export ATP-bind 100.0 1.1E-79 3.7E-84 662.0 54.9 451 1-456 125-579 (582)
8 2yl4_A ATP-binding cassette SU 100.0 1.2E-78 4.2E-83 655.4 56.4 454 1-457 122-584 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 2.3E-76 7.9E-81 683.7 42.7 454 1-456 168-625 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 4.2E-73 1.4E-77 656.5 42.8 456 1-458 811-1272(1284)
11 3nh6_A ATP-binding cassette SU 100.0 6.7E-68 2.3E-72 523.9 25.6 278 177-458 13-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 7.6E-59 2.6E-63 447.4 30.8 237 219-455 6-244 (247)
13 2ghi_A Transport protein; mult 100.0 3.2E-57 1.1E-61 439.3 28.3 237 219-456 16-254 (260)
14 2ixe_A Antigen peptide transpo 100.0 2.7E-57 9.2E-62 442.3 27.0 239 219-457 15-258 (271)
15 1mv5_A LMRA, multidrug resista 100.0 3.4E-58 1.1E-62 442.2 20.0 233 221-454 2-236 (243)
16 3gd7_A Fusion complex of cysti 100.0 2.3E-56 7.7E-61 454.8 25.3 231 215-446 14-244 (390)
17 2pze_A Cystic fibrosis transme 100.0 9E-55 3.1E-59 414.6 26.3 221 219-452 5-226 (229)
18 2cbz_A Multidrug resistance-as 100.0 4.3E-55 1.5E-59 418.8 22.9 226 220-458 3-231 (237)
19 3gfo_A Cobalt import ATP-bindi 100.0 4.3E-54 1.5E-58 419.8 19.0 215 220-446 7-235 (275)
20 3tui_C Methionine import ATP-b 100.0 1E-53 3.4E-58 429.9 20.9 216 219-445 23-254 (366)
21 3tif_A Uncharacterized ABC tra 100.0 1.4E-53 4.8E-58 407.8 19.6 213 221-443 2-233 (235)
22 1ji0_A ABC transporter; ATP bi 100.0 4.5E-52 1.6E-56 398.7 24.4 217 220-444 6-228 (240)
23 4g1u_C Hemin import ATP-bindin 100.0 2.2E-52 7.6E-57 406.3 21.8 213 220-445 11-238 (266)
24 2olj_A Amino acid ABC transpor 100.0 4E-52 1.4E-56 403.6 22.9 213 220-445 24-249 (263)
25 3fvq_A Fe(3+) IONS import ATP- 100.0 6.1E-52 2.1E-56 416.7 23.1 214 220-446 4-230 (359)
26 1b0u_A Histidine permease; ABC 100.0 1.3E-51 4.4E-56 400.4 23.0 213 220-445 6-243 (262)
27 1vpl_A ABC transporter, ATP-bi 100.0 1.7E-51 5.8E-56 397.7 23.0 212 219-444 14-235 (256)
28 1g6h_A High-affinity branched- 100.0 9.2E-52 3.1E-56 400.5 20.8 209 220-441 7-239 (257)
29 2pcj_A ABC transporter, lipopr 100.0 8.2E-52 2.8E-56 392.8 19.3 206 220-438 4-222 (224)
30 3rlf_A Maltose/maltodextrin im 100.0 1.2E-51 4E-56 417.4 21.4 212 220-446 3-225 (381)
31 2yz2_A Putative ABC transporte 100.0 3.8E-51 1.3E-55 398.0 22.7 212 220-445 2-228 (266)
32 2bbs_A Cystic fibrosis transme 100.0 4.2E-51 1.4E-55 401.6 22.5 214 219-450 39-253 (290)
33 2yyz_A Sugar ABC transporter, 100.0 5.4E-51 1.8E-55 411.0 23.6 212 220-446 3-225 (359)
34 2onk_A Molybdate/tungstate ABC 100.0 3.8E-51 1.3E-55 391.8 20.2 207 221-445 2-217 (240)
35 1z47_A CYSA, putative ABC-tran 100.0 5.1E-51 1.7E-55 410.2 20.9 213 219-445 13-236 (355)
36 2ihy_A ABC transporter, ATP-bi 100.0 5.7E-51 2E-55 398.9 19.9 212 220-444 21-252 (279)
37 1v43_A Sugar-binding transport 100.0 1.4E-50 5E-55 409.6 23.5 212 220-446 11-233 (372)
38 2it1_A 362AA long hypothetical 100.0 6E-51 2.1E-55 411.0 20.0 212 220-446 3-225 (362)
39 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-50 3.7E-55 407.5 21.7 210 221-446 2-219 (348)
40 1oxx_K GLCV, glucose, ABC tran 100.0 6.2E-51 2.1E-55 410.5 19.1 214 220-446 3-232 (353)
41 2qi9_C Vitamin B12 import ATP- 100.0 1.5E-50 5.1E-55 389.6 20.5 207 220-444 4-222 (249)
42 1g29_1 MALK, maltose transport 100.0 2.1E-50 7.1E-55 409.1 19.9 212 220-446 3-231 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 8.1E-50 2.8E-54 385.3 21.7 209 220-441 3-230 (250)
44 2zu0_C Probable ATP-dependent 100.0 2.5E-49 8.6E-54 385.3 19.5 211 220-443 20-253 (267)
45 2pjz_A Hypothetical protein ST 100.0 3.3E-49 1.1E-53 383.0 18.6 206 221-444 2-215 (263)
46 2nq2_C Hypothetical ABC transp 100.0 7.9E-49 2.7E-53 378.7 20.2 199 220-444 4-217 (253)
47 1sgw_A Putative ABC transporte 100.0 3.5E-48 1.2E-52 364.6 12.2 193 220-433 10-210 (214)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 4.8E-40 1.7E-44 349.3 14.3 199 219-444 286-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 7.8E-40 2.7E-44 351.4 15.0 199 219-444 356-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 5.3E-39 1.8E-43 340.7 16.1 199 219-443 268-476 (538)
51 2iw3_A Elongation factor 3A; a 100.0 2.7E-38 9.2E-43 350.8 16.7 197 220-438 671-981 (986)
52 3j16_B RLI1P; ribosome recycli 100.0 8.9E-38 3E-42 334.9 15.1 197 224-445 350-560 (608)
53 3bk7_A ABC transporter ATP-bin 100.0 2.4E-38 8.3E-43 339.8 10.2 197 220-431 83-304 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 2.8E-38 9.4E-43 335.8 8.1 196 221-431 21-234 (538)
55 2iw3_A Elongation factor 3A; a 100.0 5.8E-36 2E-40 332.2 24.3 196 219-444 434-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 3.1E-37 1E-41 337.0 13.7 204 235-447 31-301 (670)
57 2v9p_A Replication protein E1; 100.0 1.6E-41 5.5E-46 334.4 -20.7 230 156-456 43-275 (305)
58 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-36 4.4E-41 332.0 11.3 202 235-447 335-643 (670)
59 3j16_B RLI1P; ribosome recycli 100.0 5.1E-36 1.7E-40 321.3 11.1 196 225-433 82-299 (608)
60 3ozx_A RNAse L inhibitor; ATP 100.0 3E-36 1E-40 319.5 7.7 193 225-432 4-214 (538)
61 3pih_A Uvrabc system protein A 100.0 2.8E-34 9.7E-39 318.3 17.8 205 236-450 598-908 (916)
62 4aby_A DNA repair protein RECN 100.0 2.1E-33 7.2E-38 289.7 13.2 200 237-437 50-381 (415)
63 2r6f_A Excinuclease ABC subuni 100.0 4.8E-33 1.6E-37 306.6 13.4 214 219-449 628-947 (972)
64 2vf7_A UVRA2, excinuclease ABC 100.0 7E-33 2.4E-37 304.9 14.0 215 219-446 501-829 (842)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.6E-36 5.5E-41 315.6 -14.7 190 220-444 118-338 (460)
66 2ygr_A Uvrabc system protein A 100.0 2.6E-32 9E-37 301.8 14.7 214 219-449 646-965 (993)
67 1e69_A Chromosome segregation 100.0 2.1E-29 7E-34 251.6 15.0 203 239-442 16-311 (322)
68 3b85_A Phosphate starvation-in 100.0 3.5E-31 1.2E-35 247.8 -4.3 158 236-433 14-172 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.9E-27 9.9E-32 239.9 16.0 83 353-435 275-364 (365)
70 1ye8_A Protein THEP1, hypothet 99.9 4.4E-28 1.5E-32 221.4 4.0 147 250-435 2-159 (178)
71 4gp7_A Metallophosphoesterase; 99.9 6.7E-28 2.3E-32 218.7 4.5 149 240-425 1-168 (171)
72 2pt7_A CAG-ALFA; ATPase, prote 99.9 4.3E-28 1.5E-32 242.6 -4.6 141 223-433 151-292 (330)
73 1z6g_A Guanylate kinase; struc 99.9 5.2E-29 1.8E-33 235.0 -10.8 168 237-430 12-193 (218)
74 1tq4_A IIGP1, interferon-induc 99.9 1.9E-28 6.5E-33 250.8 -7.6 172 236-431 37-254 (413)
75 2dpy_A FLII, flagellum-specifi 99.9 1.8E-28 6.1E-33 253.8 -10.6 194 219-443 130-343 (438)
76 1znw_A Guanylate kinase, GMP k 99.9 7.7E-27 2.6E-31 218.1 -6.2 168 234-429 8-202 (207)
77 3sop_A Neuronal-specific septi 99.9 3.1E-26 1.1E-30 222.8 -3.2 145 250-419 4-153 (270)
78 3b9q_A Chloroplast SRP recepto 99.9 2.7E-26 9.3E-31 226.5 -4.5 174 238-433 90-284 (302)
79 2o5v_A DNA replication and rep 99.9 1.5E-23 5.1E-28 211.2 12.5 82 357-443 265-355 (359)
80 2og2_A Putative signal recogni 99.9 3.6E-25 1.2E-29 222.8 -3.7 173 239-433 148-341 (359)
81 3aez_A Pantothenate kinase; tr 99.9 2.8E-26 9.6E-31 227.5 -11.7 174 218-432 41-246 (312)
82 2obl_A ESCN; ATPase, hydrolase 99.9 1.5E-24 5E-29 218.0 -0.5 194 219-442 44-253 (347)
83 1tf7_A KAIC; homohexamer, hexa 99.9 1.4E-24 4.9E-29 230.4 -5.0 176 224-431 16-210 (525)
84 2i3b_A HCR-ntpase, human cance 99.9 3.7E-24 1.3E-28 197.1 -4.5 159 248-437 1-169 (189)
85 2o8b_B DNA mismatch repair pro 99.9 1.9E-22 6.3E-27 227.4 7.0 170 219-439 749-937 (1022)
86 2eyu_A Twitching motility prot 99.9 8.5E-23 2.9E-27 197.5 2.9 131 236-429 15-146 (261)
87 3qkt_A DNA double-strand break 99.9 6.8E-21 2.3E-25 191.2 16.2 76 354-429 245-327 (339)
88 4ad8_A DNA repair protein RECN 99.8 1.5E-21 5E-26 206.9 11.3 76 356-431 395-473 (517)
89 3pih_A Uvrabc system protein A 99.8 7.3E-23 2.5E-27 227.2 1.3 169 263-445 383-561 (916)
90 1cr0_A DNA primase/helicase; R 99.8 8.2E-22 2.8E-26 193.9 6.2 181 236-433 23-237 (296)
91 2f1r_A Molybdopterin-guanine d 99.8 1.1E-23 3.7E-28 190.8 -7.0 111 249-379 3-125 (171)
92 2ehv_A Hypothetical protein PH 99.8 2.9E-22 9.9E-27 191.2 -2.6 179 221-430 7-207 (251)
93 2jeo_A Uridine-cytidine kinase 99.8 1.7E-22 5.8E-27 193.6 -4.7 165 234-443 11-186 (245)
94 2vf7_A UVRA2, excinuclease ABC 99.8 9.1E-21 3.1E-25 208.8 8.1 180 256-445 270-476 (842)
95 2ewv_A Twitching motility prot 99.8 1.5E-23 5.1E-28 212.9 -13.0 174 237-418 127-353 (372)
96 1tf7_A KAIC; homohexamer, hexa 99.8 2.2E-21 7.7E-26 205.8 3.0 153 242-432 275-444 (525)
97 3thx_A DNA mismatch repair pro 99.8 3.7E-20 1.3E-24 206.4 10.7 165 220-442 631-811 (934)
98 1w1w_A Structural maintenance 99.8 1E-19 3.6E-24 188.3 13.2 74 357-430 333-411 (430)
99 2r6f_A Excinuclease ABC subuni 99.8 3.7E-20 1.3E-24 204.4 9.2 95 351-445 498-601 (972)
100 1ewq_A DNA mismatch repair pro 99.8 1.6E-20 5.6E-25 205.7 5.3 145 219-422 549-704 (765)
101 4a74_A DNA repair and recombin 99.8 3.1E-20 1.1E-24 174.9 5.8 147 244-431 21-200 (231)
102 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.2E-19 7.4E-24 158.5 10.4 81 353-433 53-142 (148)
103 1pzn_A RAD51, DNA repair and r 99.8 6.8E-21 2.3E-25 191.8 0.2 166 237-443 119-314 (349)
104 3szr_A Interferon-induced GTP- 99.8 1E-21 3.4E-26 211.6 -7.1 189 220-442 10-235 (608)
105 1lvg_A Guanylate kinase, GMP k 99.8 7.6E-23 2.6E-27 189.8 -14.3 158 246-430 2-173 (198)
106 3jvv_A Twitching mobility prot 99.8 7.3E-20 2.5E-24 184.3 4.8 147 224-431 92-246 (356)
107 2qnr_A Septin-2, protein NEDD5 99.8 1.4E-20 4.8E-25 185.8 -0.8 161 224-417 2-168 (301)
108 1pui_A ENGB, probable GTP-bind 99.8 1.7E-20 5.9E-25 174.1 -0.4 168 221-403 4-196 (210)
109 1lw7_A Transcriptional regulat 99.8 3.8E-21 1.3E-25 195.0 -5.7 176 237-444 157-355 (365)
110 2ygr_A Uvrabc system protein A 99.8 4.8E-19 1.7E-23 196.2 9.5 95 351-445 515-618 (993)
111 3asz_A Uridine kinase; cytidin 99.8 8.9E-22 3E-26 183.7 -10.6 139 245-416 3-161 (211)
112 1rj9_A FTSY, signal recognitio 99.7 2.1E-20 7.2E-25 184.5 -4.5 164 246-432 100-284 (304)
113 3thx_B DNA mismatch repair pro 99.7 4.3E-19 1.5E-23 197.3 5.0 157 220-424 640-804 (918)
114 2qag_C Septin-7; cell cycle, c 99.7 1.2E-19 4.1E-24 186.2 0.1 165 219-418 10-179 (418)
115 2w0m_A SSO2452; RECA, SSPF, un 99.7 4.5E-19 1.5E-23 166.8 3.1 164 236-431 10-192 (235)
116 1s96_A Guanylate kinase, GMP k 99.7 1.1E-18 3.6E-23 164.4 2.8 143 242-443 10-159 (219)
117 2gza_A Type IV secretion syste 99.7 1.8E-19 6E-24 182.4 -3.7 153 222-432 137-303 (361)
118 3kta_B Chromosome segregation 99.7 3.1E-17 1.1E-21 148.5 10.7 79 355-433 62-146 (173)
119 1wb9_A DNA mismatch repair pro 99.7 4.2E-18 1.4E-22 187.7 3.3 152 235-437 595-751 (800)
120 2qag_B Septin-6, protein NEDD5 99.7 3.3E-18 1.1E-22 175.0 1.9 180 220-415 16-218 (427)
121 1nlf_A Regulatory protein REPA 99.7 5.3E-17 1.8E-21 158.2 5.7 151 244-419 26-184 (279)
122 1zp6_A Hypothetical protein AT 99.6 3E-18 1E-22 156.9 -4.5 139 244-403 5-147 (191)
123 1nij_A Hypothetical protein YJ 99.6 9.2E-18 3.2E-22 166.9 -3.1 153 249-417 5-190 (318)
124 1odf_A YGR205W, hypothetical 3 99.6 1.3E-18 4.5E-23 170.6 -9.2 129 246-392 29-169 (290)
125 2cvh_A DNA repair and recombin 99.6 6.8E-16 2.3E-20 144.0 9.6 150 237-431 8-185 (220)
126 1n0w_A DNA repair protein RAD5 99.6 6.7E-16 2.3E-20 146.3 8.3 146 244-431 20-209 (243)
127 2bdt_A BH3686; alpha-beta prot 99.6 2E-18 6.8E-23 158.2 -10.4 166 248-443 2-183 (189)
128 3c8u_A Fructokinase; YP_612366 99.6 2.2E-18 7.7E-23 160.7 -11.3 133 245-418 19-160 (208)
129 2qm8_A GTPase/ATPase; G protei 99.6 3.1E-18 1.1E-22 171.6 -12.6 177 221-403 30-258 (337)
130 2bbw_A Adenylate kinase 4, AK4 99.5 1.6E-16 5.6E-21 151.8 -4.2 147 247-404 26-197 (246)
131 1htw_A HI0065; nucleotide-bind 99.5 4.5E-16 1.5E-20 138.9 -2.7 86 224-317 11-96 (158)
132 1sxj_E Activator 1 40 kDa subu 99.5 1.2E-14 4E-19 145.8 6.4 139 250-419 38-177 (354)
133 2yhs_A FTSY, cell division pro 99.5 1.1E-14 3.8E-19 150.9 6.1 154 238-414 283-447 (503)
134 3auy_A DNA double-strand break 99.5 6.1E-14 2.1E-18 142.2 10.2 74 356-429 279-359 (371)
135 1p9r_A General secretion pathw 99.5 3.5E-17 1.2E-21 168.0 -14.1 127 237-380 158-314 (418)
136 3lda_A DNA repair protein RAD5 99.5 5.5E-14 1.9E-18 143.4 8.3 147 244-432 174-364 (400)
137 2oap_1 GSPE-2, type II secreti 99.5 1.3E-16 4.5E-21 167.9 -11.6 173 236-423 248-458 (511)
138 2rcn_A Probable GTPase ENGC; Y 99.5 2.2E-14 7.5E-19 143.8 4.9 122 237-373 205-329 (358)
139 3e70_C DPA, signal recognition 99.5 4.7E-14 1.6E-18 140.4 6.7 166 244-434 125-307 (328)
140 2kjq_A DNAA-related protein; s 99.4 9.4E-14 3.2E-18 122.6 6.0 91 237-415 30-124 (149)
141 3ec2_A DNA replication protein 99.4 1.1E-13 3.6E-18 125.6 5.9 111 242-417 32-144 (180)
142 2x8a_A Nuclear valosin-contain 99.4 6.6E-16 2.2E-20 150.3 -10.3 144 236-401 34-191 (274)
143 2yv5_A YJEQ protein; hydrolase 99.4 6.3E-14 2.2E-18 138.1 2.1 114 243-370 160-300 (302)
144 1sq5_A Pantothenate kinase; P- 99.3 6.9E-15 2.4E-19 145.4 -8.3 139 219-390 36-199 (308)
145 1u0l_A Probable GTPase ENGC; p 99.3 7.1E-13 2.4E-17 130.5 3.9 101 243-344 164-289 (301)
146 1udx_A The GTP-binding protein 99.3 2.4E-13 8.1E-18 139.4 0.2 152 238-414 147-306 (416)
147 3lnc_A Guanylate kinase, GMP k 99.3 6.6E-15 2.3E-19 139.2 -11.7 176 237-432 16-212 (231)
148 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.6E-14 1.6E-18 143.4 -9.5 169 244-439 16-208 (392)
149 3euj_A Chromosome partition pr 99.2 5E-12 1.7E-16 131.3 3.7 64 222-290 8-71 (483)
150 1vma_A Cell division protein F 99.2 2.3E-11 7.8E-16 119.8 6.9 98 241-386 97-197 (306)
151 2px0_A Flagellar biosynthesis 99.2 3.1E-11 1.1E-15 118.4 7.7 139 246-436 103-247 (296)
152 1ls1_A Signal recognition part 99.2 3.3E-11 1.1E-15 118.2 7.9 142 221-413 77-219 (295)
153 3tr0_A Guanylate kinase, GMP k 99.1 6.9E-12 2.3E-16 115.5 1.9 72 242-317 1-73 (205)
154 1t9h_A YLOQ, probable GTPase E 99.1 3.3E-12 1.1E-16 125.7 -0.8 72 243-316 168-247 (307)
155 1in4_A RUVB, holliday junction 99.1 7.9E-15 2.7E-19 146.6 -21.9 156 221-403 19-192 (334)
156 1cke_A CK, MSSA, protein (cyti 99.1 1.5E-12 5E-17 122.2 -6.3 128 248-386 5-151 (227)
157 1oix_A RAS-related protein RAB 99.1 1.1E-11 3.7E-16 113.3 -1.1 142 250-402 31-188 (191)
158 4e22_A Cytidylate kinase; P-lo 99.0 2.2E-11 7.5E-16 116.7 0.2 72 246-317 25-114 (252)
159 1iy2_A ATP-dependent metallopr 99.0 3.6E-13 1.2E-17 130.9 -12.9 136 222-385 51-195 (278)
160 1qhl_A Protein (cell division 99.0 5E-12 1.7E-16 119.1 -4.9 75 220-304 9-91 (227)
161 2dr3_A UPF0273 protein PH0284; 99.0 1.5E-10 5.3E-15 109.3 5.0 166 237-430 11-196 (247)
162 2zr9_A Protein RECA, recombina 99.0 6.8E-10 2.3E-14 111.3 9.2 143 244-438 57-237 (349)
163 3a00_A Guanylate kinase, GMP k 99.0 9.7E-11 3.3E-15 106.7 2.1 127 248-383 1-169 (186)
164 3k1j_A LON protease, ATP-depen 99.0 3.5E-11 1.2E-15 129.6 -2.5 156 235-402 47-227 (604)
165 2ius_A DNA translocase FTSK; n 98.9 2.2E-11 7.5E-16 127.4 -4.3 160 240-417 159-343 (512)
166 1ixz_A ATP-dependent metallopr 98.9 9.6E-13 3.3E-17 125.9 -13.6 138 221-386 26-172 (254)
167 2r6a_A DNAB helicase, replicat 98.9 5.4E-10 1.9E-14 116.1 4.9 176 237-433 192-401 (454)
168 2dy1_A Elongation factor G; tr 98.9 1.2E-09 4.1E-14 118.6 5.8 132 242-418 3-138 (665)
169 1svm_A Large T antigen; AAA+ f 98.8 3.9E-11 1.3E-15 121.4 -7.6 136 236-386 157-312 (377)
170 2f9l_A RAB11B, member RAS onco 98.8 2E-09 7E-14 98.5 3.9 35 366-402 130-164 (199)
171 3ney_A 55 kDa erythrocyte memb 98.7 2.1E-09 7.3E-14 98.7 1.5 83 243-333 14-109 (197)
172 1kgd_A CASK, peripheral plasma 98.7 1.8E-09 6.2E-14 97.7 -0.2 68 246-316 3-81 (180)
173 2ce7_A Cell division protein F 98.6 3.3E-08 1.1E-12 102.8 7.7 114 236-419 39-167 (476)
174 4eun_A Thermoresistant glucoki 98.6 3.1E-09 1.1E-13 97.8 -0.5 63 241-308 22-84 (200)
175 2j41_A Guanylate kinase; GMP, 98.6 1.1E-08 3.7E-13 93.9 3.2 62 243-308 1-63 (207)
176 3nwj_A ATSK2; P loop, shikimat 98.6 2.9E-09 9.8E-14 101.8 -1.0 52 220-272 17-72 (250)
177 3uie_A Adenylyl-sulfate kinase 98.6 1.1E-09 3.8E-14 100.8 -4.3 60 224-286 3-64 (200)
178 2qtf_A Protein HFLX, GTP-bindi 98.6 2E-08 6.7E-13 101.3 4.2 142 250-403 181-351 (364)
179 2qt1_A Nicotinamide riboside k 98.6 1.6E-08 5.6E-13 93.2 2.1 47 241-310 14-60 (207)
180 2dhr_A FTSH; AAA+ protein, hex 98.6 1.7E-09 5.7E-14 113.2 -5.2 138 222-387 42-188 (499)
181 1zu4_A FTSY; GTPase, signal re 98.5 1.4E-08 4.7E-13 100.5 1.2 67 238-304 95-171 (320)
182 3hr8_A Protein RECA; alpha and 98.5 2.5E-07 8.6E-12 92.6 8.6 60 244-306 57-117 (356)
183 3kta_A Chromosome segregation 98.5 2.2E-08 7.6E-13 90.2 0.4 66 239-305 18-89 (182)
184 3t34_A Dynamin-related protein 98.4 2.1E-07 7.1E-12 93.5 5.4 46 236-284 25-72 (360)
185 1jjv_A Dephospho-COA kinase; P 98.4 1.6E-07 5.6E-12 86.3 4.0 69 359-430 61-132 (206)
186 2vp4_A Deoxynucleoside kinase; 98.4 2.4E-08 8.2E-13 94.0 -1.8 64 242-309 14-87 (230)
187 3tau_A Guanylate kinase, GMP k 98.3 7.2E-08 2.5E-12 89.2 0.9 34 246-279 6-40 (208)
188 2e87_A Hypothetical protein PH 98.3 1.3E-06 4.3E-11 87.7 10.0 61 356-417 230-293 (357)
189 2xau_A PRE-mRNA-splicing facto 98.3 7.6E-07 2.6E-11 98.2 8.5 68 356-423 189-260 (773)
190 3vaa_A Shikimate kinase, SK; s 98.3 2.4E-07 8.3E-12 84.9 3.3 38 235-272 12-49 (199)
191 2ffh_A Protein (FFH); SRP54, s 98.2 8.3E-07 2.8E-11 90.9 5.3 159 224-414 80-246 (425)
192 4a1f_A DNAB helicase, replicat 98.2 4.4E-06 1.5E-10 83.0 10.2 103 237-389 35-141 (338)
193 1rz3_A Hypothetical protein rb 98.2 3.3E-07 1.1E-11 84.2 1.5 47 244-290 18-64 (201)
194 3kl4_A SRP54, signal recogniti 98.2 1.8E-06 6.2E-11 88.5 6.8 41 247-287 96-136 (433)
195 3cr8_A Sulfate adenylyltranfer 98.2 7.4E-08 2.5E-12 102.0 -4.0 61 244-304 365-437 (552)
196 3ice_A Transcription terminati 98.1 3.1E-07 1.1E-11 92.0 -0.0 54 218-272 131-198 (422)
197 2z43_A DNA repair and recombin 98.1 1.4E-06 4.9E-11 86.1 4.1 28 244-271 103-130 (324)
198 3tqc_A Pantothenate kinase; bi 98.0 5.5E-07 1.9E-11 88.9 -0.1 46 236-281 74-127 (321)
199 1knq_A Gluconate kinase; ALFA/ 98.0 1.3E-06 4.3E-11 78.0 1.7 38 246-287 6-43 (175)
200 1fnn_A CDC6P, cell division co 98.0 9.7E-06 3.3E-10 81.3 7.9 45 374-419 124-172 (389)
201 1v5w_A DMC1, meiotic recombina 97.9 4.4E-06 1.5E-10 83.4 4.2 28 244-271 118-145 (343)
202 1sxj_C Activator 1 40 kDa subu 97.9 1.5E-06 5.1E-11 86.4 0.4 42 236-277 32-75 (340)
203 3b9p_A CG5977-PA, isoform A; A 97.9 2.7E-05 9.3E-10 75.4 9.3 71 359-429 97-187 (297)
204 3m6a_A ATP-dependent protease 97.9 1.7E-06 5.8E-11 91.7 0.2 80 223-305 86-165 (543)
205 2pez_A Bifunctional 3'-phospho 97.9 1.3E-06 4.3E-11 78.4 -1.1 40 246-286 3-44 (179)
206 1ega_A Protein (GTP-binding pr 97.9 3.7E-06 1.3E-10 82.3 1.8 145 247-420 7-163 (301)
207 2p67_A LAO/AO transport system 97.8 2.1E-06 7.3E-11 85.6 -0.4 52 236-287 44-95 (341)
208 2z4s_A Chromosomal replication 97.8 1.6E-05 5.3E-10 82.1 6.1 67 374-440 193-264 (440)
209 1mky_A Probable GTP-binding pr 97.8 8.9E-06 3E-10 83.9 4.0 61 249-309 181-253 (439)
210 1ypw_A Transitional endoplasmi 97.8 2.6E-06 9E-11 94.4 -0.1 32 243-274 233-264 (806)
211 3lxx_A GTPase IMAP family memb 97.8 0.00011 3.6E-09 69.0 10.5 28 250-277 31-58 (239)
212 1f6b_A SAR1; gtpases, N-termin 97.7 8.2E-06 2.8E-10 74.3 1.7 57 227-285 6-70 (198)
213 1kag_A SKI, shikimate kinase I 97.7 1.2E-05 4E-10 71.4 2.6 33 247-283 3-35 (173)
214 4eaq_A DTMP kinase, thymidylat 97.7 9.1E-06 3.1E-10 76.3 1.9 44 238-282 13-59 (229)
215 2qby_A CDC6 homolog 1, cell di 97.7 1.4E-05 4.7E-10 79.8 3.1 30 246-275 43-72 (386)
216 2www_A Methylmalonic aciduria 97.7 8.3E-06 2.9E-10 81.5 1.5 42 246-287 72-113 (349)
217 3llm_A ATP-dependent RNA helic 97.7 4E-05 1.4E-09 71.9 5.5 132 245-412 73-215 (235)
218 3r20_A Cytidylate kinase; stru 97.6 1.4E-05 4.7E-10 75.3 1.8 69 248-316 9-95 (233)
219 1m7g_A Adenylylsulfate kinase; 97.6 9.8E-06 3.4E-10 74.7 0.4 42 243-284 20-63 (211)
220 3bh0_A DNAB-like replicative h 97.6 0.0002 6.8E-09 70.4 9.6 34 237-270 57-90 (315)
221 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.8E-05 1.3E-09 67.0 3.7 30 239-269 15-44 (149)
222 1m2o_B GTP-binding protein SAR 97.6 4.9E-05 1.7E-09 68.5 4.4 47 237-284 13-67 (190)
223 4fcw_A Chaperone protein CLPB; 97.5 8.4E-05 2.9E-09 72.2 6.3 32 248-279 47-78 (311)
224 2gj8_A MNME, tRNA modification 97.5 5.6E-05 1.9E-09 67.0 4.5 27 246-272 2-28 (172)
225 1u94_A RECA protein, recombina 97.5 0.00041 1.4E-08 69.4 11.2 35 237-272 50-87 (356)
226 1sxj_D Activator 1 41 kDa subu 97.5 1.5E-05 5.2E-10 78.9 0.3 43 375-418 133-175 (353)
227 1l8q_A Chromosomal replication 97.5 9.2E-05 3.1E-09 72.7 5.9 28 247-274 36-63 (324)
228 2qor_A Guanylate kinase; phosp 97.5 1.3E-05 4.6E-10 73.4 -0.3 30 244-273 8-37 (204)
229 2w58_A DNAI, primosome compone 97.5 8.2E-05 2.8E-09 67.7 4.7 26 249-274 55-80 (202)
230 1j8m_F SRP54, signal recogniti 97.4 1.8E-05 6.1E-10 77.3 -0.1 49 239-288 89-138 (297)
231 3cf0_A Transitional endoplasmi 97.4 0.00029 9.8E-09 68.6 7.8 30 243-272 44-73 (301)
232 3h4m_A Proteasome-activating n 97.4 0.00038 1.3E-08 66.7 8.1 28 245-272 48-75 (285)
233 2eyu_A Twitching motility prot 97.3 1.3E-07 4.4E-12 90.9 -16.9 74 342-417 157-241 (261)
234 1y63_A LMAJ004144AAA protein; 97.3 9.6E-05 3.3E-09 66.5 3.0 32 240-271 2-33 (184)
235 3bos_A Putative DNA replicatio 97.3 7.6E-05 2.6E-09 69.2 2.2 27 247-273 51-77 (242)
236 2yvu_A Probable adenylyl-sulfa 97.3 7.9E-05 2.7E-09 66.9 2.0 39 245-283 10-49 (186)
237 3n70_A Transport activator; si 97.2 0.00091 3.1E-08 57.5 8.5 40 375-415 76-115 (145)
238 2wji_A Ferrous iron transport 97.2 0.00027 9.1E-09 61.9 5.1 25 249-273 4-28 (165)
239 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00014 4.9E-09 73.5 3.6 41 244-284 18-69 (396)
240 2q6t_A DNAB replication FORK h 97.2 0.0011 3.7E-08 68.3 10.2 173 237-430 189-397 (444)
241 2qag_A Septin-2, protein NEDD5 97.2 2.5E-05 8.7E-10 78.3 -2.1 58 218-283 15-72 (361)
242 2wjg_A FEOB, ferrous iron tran 97.2 0.00019 6.4E-09 63.9 3.7 23 249-271 8-30 (188)
243 4dcu_A GTP-binding protein ENG 97.2 0.00041 1.4E-08 71.7 6.4 58 360-420 87-145 (456)
244 1njg_A DNA polymerase III subu 97.2 0.00012 4.2E-09 67.3 2.1 45 374-419 125-169 (250)
245 3qks_A DNA double-strand break 97.1 0.00022 7.6E-09 65.4 3.7 30 239-269 15-44 (203)
246 2i1q_A DNA repair and recombin 97.1 0.00023 8E-09 69.9 3.5 27 244-270 94-120 (322)
247 2if2_A Dephospho-COA kinase; a 97.1 0.00028 9.5E-09 64.2 3.5 22 250-271 3-24 (204)
248 1lw7_A Transcriptional regulat 97.1 8.1E-06 2.8E-10 82.0 -7.7 33 353-385 292-329 (365)
249 2zej_A Dardarin, leucine-rich 97.0 0.0003 1E-08 62.8 3.5 26 250-275 4-29 (184)
250 3t61_A Gluconokinase; PSI-biol 97.0 0.00012 4.2E-09 66.6 0.9 33 248-284 18-50 (202)
251 1np6_A Molybdopterin-guanine d 97.0 0.0002 6.8E-09 64.2 2.2 38 248-285 6-46 (174)
252 2ewv_A Twitching motility prot 97.0 0.00028 9.4E-09 71.1 3.2 57 365-427 199-255 (372)
253 2p5t_B PEZT; postsegregational 97.0 0.00018 6.2E-09 68.2 1.5 41 244-286 28-68 (253)
254 1lv7_A FTSH; alpha/beta domain 97.0 9.2E-05 3.1E-09 70.1 -0.7 44 238-285 37-80 (257)
255 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00036 1.2E-08 70.5 3.3 58 374-431 261-335 (392)
256 3dm5_A SRP54, signal recogniti 96.9 0.0047 1.6E-07 63.2 10.8 35 247-281 99-133 (443)
257 3cm0_A Adenylate kinase; ATP-b 96.8 0.00047 1.6E-08 61.5 2.9 26 246-271 2-27 (186)
258 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00017 5.8E-09 71.7 -0.2 36 237-272 11-48 (359)
259 3ihw_A Centg3; RAS, centaurin, 96.8 0.0012 4.1E-08 58.9 5.0 35 250-284 22-65 (184)
260 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0055 1.9E-07 57.5 9.7 26 247-272 38-63 (262)
261 3uk6_A RUVB-like 2; hexameric 96.7 0.0027 9.3E-08 63.0 7.9 38 246-283 68-105 (368)
262 3syl_A Protein CBBX; photosynt 96.7 0.011 3.7E-07 57.1 11.9 25 248-272 67-91 (309)
263 1qhx_A CPT, protein (chloramph 96.7 0.0009 3.1E-08 59.2 3.5 26 248-273 3-28 (178)
264 1q3t_A Cytidylate kinase; nucl 96.7 0.00083 2.8E-08 62.8 3.3 35 245-279 13-50 (236)
265 1xp8_A RECA protein, recombina 96.6 0.0067 2.3E-07 60.7 9.9 27 244-270 70-96 (366)
266 1uf9_A TT1252 protein; P-loop, 96.6 0.00088 3E-08 60.5 3.2 31 248-283 8-38 (203)
267 2chg_A Replication factor C sm 96.6 0.003 1E-07 57.0 6.8 44 374-418 101-144 (226)
268 3d8b_A Fidgetin-like protein 1 96.6 0.0048 1.7E-07 61.4 8.8 27 246-272 115-141 (357)
269 1fzq_A ADP-ribosylation factor 96.6 0.00099 3.4E-08 59.2 3.4 24 248-271 16-39 (181)
270 3kb2_A SPBC2 prophage-derived 96.6 0.00094 3.2E-08 58.5 3.2 23 250-272 3-25 (173)
271 2jaq_A Deoxyguanosine kinase; 96.6 0.00087 3E-08 60.5 3.0 23 250-272 2-24 (205)
272 1jal_A YCHF protein; nucleotid 96.6 0.0015 5.1E-08 65.3 4.7 36 248-283 2-48 (363)
273 1gtv_A TMK, thymidylate kinase 96.6 0.00028 9.4E-09 64.5 -0.7 26 250-275 2-27 (214)
274 2v1u_A Cell division control p 96.6 0.0012 4E-08 65.7 3.9 28 246-273 42-69 (387)
275 1kht_A Adenylate kinase; phosp 96.6 0.0012 4E-08 58.9 3.4 26 247-272 2-27 (192)
276 2rhm_A Putative kinase; P-loop 96.5 0.0013 4.3E-08 58.9 3.1 27 246-272 3-29 (193)
277 3lw7_A Adenylate kinase relate 96.5 0.0013 4.6E-08 57.3 3.2 19 250-268 3-21 (179)
278 3auy_A DNA double-strand break 96.5 0.0014 4.7E-08 65.8 3.6 31 238-269 16-46 (371)
279 3trf_A Shikimate kinase, SK; a 96.5 0.0014 4.9E-08 58.3 3.4 26 247-272 4-29 (185)
280 1gvn_B Zeta; postsegregational 96.5 0.0014 4.8E-08 63.4 3.5 36 246-283 31-66 (287)
281 1ko7_A HPR kinase/phosphatase; 96.4 0.0013 4.5E-08 64.3 3.1 46 236-282 133-182 (314)
282 2v54_A DTMP kinase, thymidylat 96.4 0.0016 5.6E-08 58.8 3.6 26 247-272 3-28 (204)
283 2b8t_A Thymidine kinase; deoxy 96.4 0.004 1.4E-07 57.9 6.3 51 375-429 89-150 (223)
284 1ex7_A Guanylate kinase; subst 96.4 0.0014 4.7E-08 59.3 3.0 44 251-296 4-60 (186)
285 1vht_A Dephospho-COA kinase; s 96.4 0.0017 5.8E-08 59.6 3.4 32 247-283 3-34 (218)
286 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.012 4.1E-07 57.7 9.5 27 246-272 43-69 (322)
287 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0037 1.2E-07 61.3 5.6 28 243-270 118-145 (331)
288 2ze6_A Isopentenyl transferase 96.3 0.0016 5.6E-08 61.6 3.0 24 249-272 2-25 (253)
289 3iij_A Coilin-interacting nucl 96.3 0.0018 6.1E-08 57.5 2.9 27 246-272 9-35 (180)
290 3co5_A Putative two-component 96.3 0.0072 2.5E-07 51.7 6.6 28 246-273 25-52 (143)
291 3cmw_A Protein RECA, recombina 96.3 0.017 5.8E-07 68.1 11.6 35 245-279 729-763 (1706)
292 2c95_A Adenylate kinase 1; tra 96.3 0.002 6.9E-08 57.7 3.2 27 246-272 7-33 (196)
293 3zvl_A Bifunctional polynucleo 96.3 0.019 6.5E-07 58.4 10.8 29 244-272 254-282 (416)
294 2wwf_A Thymidilate kinase, put 96.3 0.0022 7.6E-08 58.3 3.4 27 246-272 8-34 (212)
295 2plr_A DTMP kinase, probable t 96.2 0.0023 7.8E-08 58.0 3.4 28 247-274 3-30 (213)
296 1nn5_A Similar to deoxythymidy 96.2 0.0025 8.5E-08 58.0 3.4 28 245-272 6-33 (215)
297 1ly1_A Polynucleotide kinase; 96.2 0.0024 8.3E-08 56.2 3.2 22 249-270 3-24 (181)
298 1via_A Shikimate kinase; struc 96.2 0.002 6.9E-08 56.9 2.6 23 250-272 6-28 (175)
299 2lkc_A Translation initiation 96.1 0.0065 2.2E-07 53.0 5.7 26 246-271 6-31 (178)
300 3k53_A Ferrous iron transport 96.1 0.0024 8.3E-08 60.9 3.1 24 250-273 5-28 (271)
301 3bgw_A DNAB-like replicative h 96.1 0.016 5.3E-07 59.6 9.3 34 237-270 186-219 (444)
302 1tev_A UMP-CMP kinase; ploop, 96.1 0.0028 9.6E-08 56.5 3.3 26 247-272 2-27 (196)
303 3cbq_A GTP-binding protein REM 96.1 0.0029 1E-07 57.0 3.3 22 250-271 25-46 (195)
304 1xjc_A MOBB protein homolog; s 96.1 0.0018 6.1E-08 57.6 1.8 26 249-274 5-30 (169)
305 2erx_A GTP-binding protein DI- 96.1 0.0051 1.7E-07 53.1 4.8 21 250-270 5-25 (172)
306 2vli_A Antibiotic resistance p 96.1 0.0023 7.8E-08 56.7 2.4 27 246-272 3-29 (183)
307 1jr3_A DNA polymerase III subu 96.0 0.011 3.7E-07 58.5 7.5 43 375-418 119-161 (373)
308 2bwj_A Adenylate kinase 5; pho 96.0 0.0025 8.6E-08 57.2 2.5 28 245-272 9-36 (199)
309 3q72_A GTP-binding protein RAD 96.0 0.0031 1.1E-07 54.4 3.0 23 250-272 4-26 (166)
310 1nks_A Adenylate kinase; therm 96.0 0.0032 1.1E-07 56.1 3.1 24 250-273 3-26 (194)
311 1z2a_A RAS-related protein RAB 96.0 0.0033 1.1E-07 54.2 2.9 22 250-271 7-28 (168)
312 2ged_A SR-beta, signal recogni 95.9 0.0034 1.2E-07 55.9 3.0 25 248-272 48-72 (193)
313 1aky_A Adenylate kinase; ATP:A 95.9 0.0041 1.4E-07 57.1 3.5 27 246-272 2-28 (220)
314 2nzj_A GTP-binding protein REM 95.9 0.004 1.4E-07 54.1 3.3 23 250-272 6-28 (175)
315 3lxw_A GTPase IMAP family memb 95.9 0.0037 1.3E-07 58.9 3.2 23 250-272 23-45 (247)
316 3iby_A Ferrous iron transport 95.9 0.0042 1.4E-07 58.9 3.6 23 250-272 3-25 (256)
317 1kao_A RAP2A; GTP-binding prot 95.9 0.0038 1.3E-07 53.6 3.0 22 250-271 5-26 (167)
318 2ce2_X GTPase HRAS; signaling 95.9 0.0036 1.2E-07 53.6 2.8 22 250-271 5-26 (166)
319 2dyk_A GTP-binding protein; GT 95.9 0.0039 1.3E-07 53.4 3.0 23 250-272 3-25 (161)
320 3q85_A GTP-binding protein REM 95.9 0.0042 1.4E-07 53.7 3.2 23 250-272 4-26 (169)
321 2z0h_A DTMP kinase, thymidylat 95.8 0.0042 1.4E-07 55.6 3.2 23 250-272 2-24 (197)
322 1zd8_A GTP:AMP phosphotransfer 95.8 0.0043 1.5E-07 57.3 3.3 27 246-272 5-31 (227)
323 3tw8_B RAS-related protein RAB 95.8 0.0045 1.5E-07 54.1 3.2 22 250-271 11-32 (181)
324 1u8z_A RAS-related protein RAL 95.8 0.0041 1.4E-07 53.4 2.9 22 250-271 6-27 (168)
325 1z0j_A RAB-22, RAS-related pro 95.8 0.0043 1.5E-07 53.6 3.0 23 250-272 8-30 (170)
326 1g16_A RAS-related protein SEC 95.8 0.0041 1.4E-07 53.7 2.8 22 250-271 5-26 (170)
327 1z08_A RAS-related protein RAB 95.8 0.0044 1.5E-07 53.6 3.0 22 250-271 8-29 (170)
328 3ake_A Cytidylate kinase; CMP 95.8 0.0042 1.4E-07 56.1 2.9 23 250-272 4-26 (208)
329 1c1y_A RAS-related protein RAP 95.8 0.0044 1.5E-07 53.4 2.9 22 250-271 5-26 (167)
330 2cdn_A Adenylate kinase; phosp 95.8 0.0052 1.8E-07 55.5 3.6 26 247-272 19-44 (201)
331 3b1v_A Ferrous iron uptake tra 95.8 0.0045 1.6E-07 59.3 3.3 24 249-272 4-27 (272)
332 3pxi_A Negative regulator of g 95.8 0.018 6.3E-07 63.1 8.6 23 250-272 523-545 (758)
333 3fb4_A Adenylate kinase; psych 95.8 0.0045 1.6E-07 56.5 3.2 23 250-272 2-24 (216)
334 1ek0_A Protein (GTP-binding pr 95.8 0.0044 1.5E-07 53.4 2.9 22 250-271 5-26 (170)
335 1ky3_A GTP-binding protein YPT 95.8 0.0045 1.5E-07 54.1 3.0 23 250-272 10-32 (182)
336 1svi_A GTP-binding protein YSX 95.8 0.0043 1.5E-07 55.2 2.9 24 248-271 23-46 (195)
337 3t5d_A Septin-7; GTP-binding p 95.8 0.0045 1.5E-07 59.2 3.1 23 250-272 10-32 (274)
338 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0047 1.6E-07 53.9 3.0 22 250-271 9-30 (177)
339 3pqc_A Probable GTP-binding pr 95.7 0.0045 1.5E-07 54.9 2.9 24 249-272 24-47 (195)
340 2fn4_A P23, RAS-related protei 95.7 0.0046 1.6E-07 54.0 2.9 22 250-271 11-32 (181)
341 1ukz_A Uridylate kinase; trans 95.7 0.0051 1.7E-07 55.6 3.2 25 248-272 15-39 (203)
342 2ew1_A RAS-related protein RAB 95.7 0.0092 3.2E-07 54.0 4.9 22 250-271 28-49 (201)
343 1zak_A Adenylate kinase; ATP:A 95.7 0.0044 1.5E-07 57.0 2.7 26 247-272 4-29 (222)
344 2dby_A GTP-binding protein; GD 95.7 0.0045 1.5E-07 62.0 3.0 22 250-271 3-24 (368)
345 1zuh_A Shikimate kinase; alpha 95.7 0.0058 2E-07 53.5 3.3 24 248-271 7-30 (168)
346 1r2q_A RAS-related protein RAB 95.7 0.0052 1.8E-07 52.9 2.9 21 250-270 8-28 (170)
347 3dl0_A Adenylate kinase; phosp 95.7 0.0054 1.8E-07 56.1 3.2 23 250-272 2-24 (216)
348 2pt5_A Shikimate kinase, SK; a 95.7 0.0058 2E-07 53.3 3.2 23 250-272 2-24 (168)
349 2cxx_A Probable GTP-binding pr 95.6 0.0052 1.8E-07 54.3 2.9 23 250-272 3-25 (190)
350 1qf9_A UMP/CMP kinase, protein 95.6 0.0057 2E-07 54.4 3.1 25 248-272 6-30 (194)
351 1moz_A ARL1, ADP-ribosylation 95.6 0.0043 1.5E-07 54.6 2.3 24 247-270 17-40 (183)
352 1e6c_A Shikimate kinase; phosp 95.6 0.005 1.7E-07 53.9 2.7 24 249-272 3-26 (173)
353 2pbr_A DTMP kinase, thymidylat 95.6 0.0058 2E-07 54.5 3.1 23 250-272 2-24 (195)
354 2iyv_A Shikimate kinase, SK; t 95.6 0.0048 1.6E-07 54.8 2.6 24 249-272 3-26 (184)
355 4dsu_A GTPase KRAS, isoform 2B 95.6 0.0056 1.9E-07 54.0 3.0 22 250-271 6-27 (189)
356 3clv_A RAB5 protein, putative; 95.6 0.0056 1.9E-07 54.4 3.0 22 250-271 9-30 (208)
357 3t1o_A Gliding protein MGLA; G 95.6 0.006 2E-07 54.1 3.1 25 250-274 16-40 (198)
358 2oil_A CATX-8, RAS-related pro 95.6 0.0056 1.9E-07 54.5 2.9 22 250-271 27-48 (193)
359 2hxs_A RAB-26, RAS-related pro 95.6 0.0066 2.3E-07 53.0 3.3 22 250-271 8-29 (178)
360 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0092 3.1E-07 52.8 4.2 22 250-271 9-30 (184)
361 1r8s_A ADP-ribosylation factor 95.6 0.006 2.1E-07 52.4 2.9 21 250-270 2-22 (164)
362 1upt_A ARL1, ADP-ribosylation 95.6 0.006 2.1E-07 52.8 2.9 23 248-270 7-29 (171)
363 3bc1_A RAS-related protein RAB 95.6 0.0059 2E-07 53.9 2.9 22 250-271 13-34 (195)
364 2y8e_A RAB-protein 6, GH09086P 95.5 0.0059 2E-07 53.2 2.8 22 250-271 16-37 (179)
365 2grj_A Dephospho-COA kinase; T 95.5 0.0067 2.3E-07 55.0 3.2 23 249-271 13-35 (192)
366 1a7j_A Phosphoribulokinase; tr 95.5 0.0039 1.3E-07 60.3 1.6 26 247-272 4-29 (290)
367 3tlx_A Adenylate kinase 2; str 95.5 0.0071 2.4E-07 56.7 3.4 26 247-272 28-53 (243)
368 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0073 2.5E-07 57.2 3.4 25 247-271 3-27 (260)
369 2g6b_A RAS-related protein RAB 95.5 0.0067 2.3E-07 53.0 2.9 22 250-271 12-33 (180)
370 3con_A GTPase NRAS; structural 95.5 0.0067 2.3E-07 53.8 2.9 22 250-271 23-44 (190)
371 1z0f_A RAB14, member RAS oncog 95.5 0.0068 2.3E-07 52.8 2.9 22 250-271 17-38 (179)
372 2a9k_A RAS-related protein RAL 95.4 0.007 2.4E-07 53.1 2.9 22 250-271 20-41 (187)
373 2efe_B Small GTP-binding prote 95.4 0.0071 2.4E-07 52.9 3.0 22 250-271 14-35 (181)
374 3t5g_A GTP-binding protein RHE 95.4 0.012 4.3E-07 51.5 4.6 21 250-270 8-28 (181)
375 1wf3_A GTP-binding protein; GT 95.4 0.0072 2.5E-07 58.8 3.2 22 250-271 9-30 (301)
376 1uj2_A Uridine-cytidine kinase 95.4 0.0072 2.5E-07 56.9 3.2 24 249-272 23-46 (252)
377 2xtp_A GTPase IMAP family memb 95.4 0.0072 2.5E-07 57.0 3.1 24 249-272 23-46 (260)
378 1ksh_A ARF-like protein 2; sma 95.4 0.0083 2.8E-07 52.9 3.3 26 246-271 16-41 (186)
379 3a8t_A Adenylate isopentenyltr 95.4 0.0093 3.2E-07 58.8 3.8 27 247-273 39-65 (339)
380 2bme_A RAB4A, RAS-related prot 95.4 0.0072 2.5E-07 53.2 2.8 22 250-271 12-33 (186)
381 2gf9_A RAS-related protein RAB 95.3 0.008 2.7E-07 53.3 2.9 22 250-271 24-45 (189)
382 2fg5_A RAB-22B, RAS-related pr 95.3 0.0078 2.7E-07 53.7 2.9 22 250-271 25-46 (192)
383 3kkq_A RAS-related protein M-R 95.3 0.0081 2.8E-07 52.8 2.9 22 250-271 20-41 (183)
384 1vg8_A RAS-related protein RAB 95.3 0.0082 2.8E-07 53.9 3.0 23 250-272 10-32 (207)
385 2bov_A RAla, RAS-related prote 95.3 0.0082 2.8E-07 53.8 2.9 22 250-271 16-37 (206)
386 1sxj_B Activator 1 37 kDa subu 95.3 0.022 7.4E-07 54.9 6.1 43 375-418 107-149 (323)
387 2il1_A RAB12; G-protein, GDP, 95.3 0.0091 3.1E-07 53.3 3.2 22 250-271 28-49 (192)
388 1nrj_B SR-beta, signal recogni 95.3 0.0083 2.8E-07 54.6 2.9 24 249-272 13-36 (218)
389 2gf0_A GTP-binding protein DI- 95.3 0.0082 2.8E-07 53.5 2.9 22 249-270 9-30 (199)
390 2h57_A ADP-ribosylation factor 95.3 0.0082 2.8E-07 53.3 2.8 23 250-272 23-45 (190)
391 4dhe_A Probable GTP-binding pr 95.3 0.0051 1.7E-07 56.2 1.4 25 248-272 29-53 (223)
392 3tkl_A RAS-related protein RAB 95.3 0.0086 3E-07 53.2 2.9 23 250-272 18-40 (196)
393 3iev_A GTP-binding protein ERA 95.3 0.0088 3E-07 58.3 3.2 23 249-271 11-33 (308)
394 1ypw_A Transitional endoplasmi 95.2 0.00069 2.4E-08 75.0 -5.3 45 241-287 504-548 (806)
395 3u61_B DNA polymerase accessor 95.2 0.044 1.5E-06 53.2 8.3 43 375-418 105-148 (324)
396 3be4_A Adenylate kinase; malar 95.2 0.0091 3.1E-07 54.8 3.1 26 247-272 4-29 (217)
397 3i8s_A Ferrous iron transport 95.2 0.0088 3E-07 57.2 3.1 23 250-272 5-27 (274)
398 1z06_A RAS-related protein RAB 95.2 0.009 3.1E-07 53.0 3.0 22 250-271 22-43 (189)
399 2qu8_A Putative nucleolar GTP- 95.2 0.0096 3.3E-07 54.8 3.3 23 249-271 30-52 (228)
400 1zbd_A Rabphilin-3A; G protein 95.2 0.0097 3.3E-07 53.4 3.2 22 250-271 10-31 (203)
401 2qmh_A HPR kinase/phosphorylas 95.2 0.014 4.8E-07 53.1 4.2 34 237-271 24-57 (205)
402 2cjw_A GTP-binding protein GEM 95.2 0.009 3.1E-07 53.5 2.9 22 250-271 8-29 (192)
403 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.0092 3.1E-07 52.4 2.9 21 250-270 7-27 (186)
404 3oes_A GTPase rhebl1; small GT 95.2 0.0086 2.9E-07 53.8 2.8 24 249-272 25-48 (201)
405 3a1s_A Iron(II) transport prot 95.2 0.0098 3.4E-07 56.4 3.3 23 250-272 7-29 (258)
406 2f6r_A COA synthase, bifunctio 95.2 0.0092 3.2E-07 57.3 3.1 23 248-270 75-97 (281)
407 3dz8_A RAS-related protein RAB 95.2 0.0091 3.1E-07 53.1 2.8 22 250-271 25-46 (191)
408 4bas_A ADP-ribosylation factor 95.2 0.011 3.6E-07 52.7 3.3 23 249-271 18-40 (199)
409 1gwn_A RHO-related GTP-binding 95.2 0.015 5E-07 52.8 4.2 22 250-271 30-51 (205)
410 2o52_A RAS-related protein RAB 95.1 0.01 3.5E-07 53.4 3.1 22 250-271 27-48 (200)
411 3cnl_A YLQF, putative uncharac 95.1 0.011 3.7E-07 56.3 3.4 30 249-278 100-129 (262)
412 2a5j_A RAS-related protein RAB 95.1 0.0098 3.4E-07 52.9 2.9 22 250-271 23-44 (191)
413 2xb4_A Adenylate kinase; ATP-b 95.1 0.011 3.6E-07 54.7 3.2 23 250-272 2-24 (223)
414 1zj6_A ADP-ribosylation factor 95.1 0.011 3.6E-07 52.4 3.1 23 248-270 16-38 (187)
415 1e4v_A Adenylate kinase; trans 95.1 0.01 3.5E-07 54.2 3.0 23 250-272 2-24 (214)
416 3cmu_A Protein RECA, recombina 95.1 0.085 2.9E-06 63.1 11.4 29 245-273 380-408 (2050)
417 1jwy_B Dynamin A GTPase domain 95.1 0.01 3.5E-07 57.5 3.1 23 250-272 26-48 (315)
418 2h17_A ADP-ribosylation factor 95.1 0.0096 3.3E-07 52.5 2.6 22 250-271 23-44 (181)
419 3llu_A RAS-related GTP-binding 95.1 0.012 4.1E-07 52.7 3.3 25 250-274 22-46 (196)
420 1qvr_A CLPB protein; coiled co 95.0 0.027 9.4E-07 62.6 6.8 27 249-275 589-615 (854)
421 3bwd_D RAC-like GTP-binding pr 95.0 0.012 4.2E-07 51.4 3.3 24 248-271 8-31 (182)
422 2bcg_Y Protein YP2, GTP-bindin 95.0 0.01 3.5E-07 53.4 2.8 22 250-271 10-31 (206)
423 2atv_A RERG, RAS-like estrogen 95.0 0.011 3.8E-07 52.8 3.0 23 249-271 29-51 (196)
424 1zd9_A ADP-ribosylation factor 95.0 0.011 3.7E-07 52.5 2.9 22 250-271 24-45 (188)
425 3reg_A RHO-like small GTPase; 95.0 0.011 3.7E-07 52.7 2.9 22 250-271 25-46 (194)
426 2p5s_A RAS and EF-hand domain 95.0 0.011 3.7E-07 53.0 2.9 25 248-272 28-52 (199)
427 1x3s_A RAS-related protein RAB 95.0 0.011 3.8E-07 52.3 2.9 22 250-271 17-38 (195)
428 2fv8_A H6, RHO-related GTP-bin 95.0 0.011 3.7E-07 53.5 2.9 23 249-271 26-48 (207)
429 3cph_A RAS-related protein SEC 95.0 0.011 3.8E-07 53.3 2.9 23 249-271 21-43 (213)
430 3exa_A TRNA delta(2)-isopenten 95.0 0.013 4.3E-07 57.3 3.4 25 248-272 3-27 (322)
431 1jbk_A CLPB protein; beta barr 95.0 0.014 4.7E-07 51.2 3.4 27 246-272 41-67 (195)
432 3def_A T7I23.11 protein; chlor 95.0 0.012 4E-07 55.8 3.1 23 250-272 38-60 (262)
433 1h65_A Chloroplast outer envel 95.0 0.012 4E-07 56.1 3.1 23 250-272 41-63 (270)
434 2j1l_A RHO-related GTP-binding 95.0 0.012 4.2E-07 53.5 3.1 21 250-270 36-56 (214)
435 3d3q_A TRNA delta(2)-isopenten 95.0 0.012 4E-07 58.2 3.2 25 249-273 8-32 (340)
436 2wsm_A Hydrogenase expression/ 95.0 0.011 3.9E-07 53.8 2.9 24 249-272 31-54 (221)
437 3v9p_A DTMP kinase, thymidylat 94.9 0.011 3.7E-07 55.1 2.7 28 246-273 23-50 (227)
438 2f7s_A C25KG, RAS-related prot 94.9 0.013 4.5E-07 53.1 3.3 23 250-272 27-49 (217)
439 2r8r_A Sensor protein; KDPD, P 94.9 0.012 4.2E-07 54.6 3.0 24 247-270 4-28 (228)
440 1ak2_A Adenylate kinase isoenz 94.9 0.014 4.9E-07 54.0 3.5 26 247-272 15-40 (233)
441 2iwr_A Centaurin gamma 1; ANK 94.9 0.0092 3.2E-07 52.2 2.1 22 250-271 9-30 (178)
442 3c5c_A RAS-like protein 12; GD 94.9 0.013 4.3E-07 52.2 3.0 21 250-270 23-43 (187)
443 2q3h_A RAS homolog gene family 94.9 0.014 4.7E-07 52.3 3.2 23 249-271 21-43 (201)
444 4edh_A DTMP kinase, thymidylat 94.9 0.014 4.9E-07 53.7 3.4 29 246-274 4-32 (213)
445 2b6h_A ADP-ribosylation factor 94.9 0.013 4.4E-07 52.4 3.0 24 247-270 28-51 (192)
446 2aka_B Dynamin-1; fusion prote 94.9 0.012 4.1E-07 56.4 2.9 23 250-272 28-50 (299)
447 2fu5_C RAS-related protein RAB 94.8 0.0092 3.1E-07 52.4 1.9 22 250-271 10-31 (183)
448 2gco_A H9, RHO-related GTP-bin 94.8 0.013 4.5E-07 52.6 2.8 22 250-271 27-48 (201)
449 1sky_E F1-ATPase, F1-ATP synth 94.8 0.013 4.4E-07 60.3 3.0 42 237-279 141-182 (473)
450 2fh5_B SR-beta, signal recogni 94.8 0.018 6.2E-07 52.1 3.7 24 249-272 8-31 (214)
451 3lv8_A DTMP kinase, thymidylat 94.8 0.016 5.4E-07 54.3 3.3 27 247-273 26-52 (236)
452 3cmw_A Protein RECA, recombina 94.8 0.096 3.3E-06 61.8 10.5 34 237-271 370-406 (1706)
453 2h92_A Cytidylate kinase; ross 94.7 0.011 3.8E-07 54.0 2.2 25 248-272 3-27 (219)
454 4tmk_A Protein (thymidylate ki 94.7 0.017 5.9E-07 53.1 3.4 27 247-273 2-28 (213)
455 2g3y_A GTP-binding protein GEM 94.7 0.017 5.8E-07 53.0 3.3 22 250-271 39-60 (211)
456 2atx_A Small GTP binding prote 94.7 0.015 5.2E-07 51.6 2.9 22 250-271 20-41 (194)
457 4djt_A GTP-binding nuclear pro 94.7 0.0086 2.9E-07 54.5 1.2 22 250-271 13-34 (218)
458 3umf_A Adenylate kinase; rossm 94.6 0.014 4.7E-07 54.0 2.6 29 244-272 25-53 (217)
459 2x77_A ADP-ribosylation factor 94.6 0.013 4.3E-07 51.9 2.3 24 247-270 21-44 (189)
460 3euj_A Chromosome partition pr 94.6 0.052 1.8E-06 56.1 7.2 77 349-429 371-464 (483)
461 1ltq_A Polynucleotide kinase; 94.6 0.016 5.5E-07 55.7 3.2 22 249-270 3-24 (301)
462 3tmk_A Thymidylate kinase; pho 94.6 0.019 6.3E-07 53.1 3.3 29 246-274 3-31 (216)
463 3ld9_A DTMP kinase, thymidylat 94.6 0.019 6.5E-07 53.2 3.4 28 246-273 19-46 (223)
464 2ocp_A DGK, deoxyguanosine kin 94.6 0.018 6.3E-07 53.6 3.3 27 247-273 1-27 (241)
465 3crm_A TRNA delta(2)-isopenten 94.6 0.017 5.9E-07 56.6 3.2 25 249-273 6-30 (323)
466 3foz_A TRNA delta(2)-isopenten 94.5 0.02 7E-07 55.7 3.4 25 248-272 10-34 (316)
467 1q57_A DNA primase/helicase; d 94.5 0.22 7.4E-06 51.7 11.6 34 238-271 232-265 (503)
468 2hf9_A Probable hydrogenase ni 94.5 0.017 5.9E-07 52.8 2.8 24 249-272 39-62 (226)
469 1p5z_B DCK, deoxycytidine kina 94.4 0.014 4.9E-07 55.1 2.3 28 246-273 22-49 (263)
470 2hup_A RAS-related protein RAB 94.4 0.018 6.3E-07 51.8 2.9 22 250-271 31-52 (201)
471 2p65_A Hypothetical protein PF 94.4 0.017 5.9E-07 50.5 2.5 29 246-274 41-69 (187)
472 3r7w_A Gtpase1, GTP-binding pr 94.4 0.022 7.4E-07 55.4 3.5 26 247-272 2-27 (307)
473 4gzl_A RAS-related C3 botulinu 94.4 0.019 6.4E-07 51.9 2.8 23 248-270 30-52 (204)
474 2v3c_C SRP54, signal recogniti 94.4 0.006 2E-07 62.5 -0.6 38 249-286 100-137 (432)
475 3tqf_A HPR(Ser) kinase; transf 94.4 0.032 1.1E-06 49.5 4.2 33 237-270 6-38 (181)
476 2yc2_C IFT27, small RAB-relate 94.3 0.0097 3.3E-07 53.3 0.8 22 250-271 22-43 (208)
477 3cpj_B GTP-binding protein YPT 94.3 0.021 7.3E-07 52.2 3.0 22 250-271 15-36 (223)
478 2r62_A Cell division protease 94.2 0.0074 2.5E-07 57.1 -0.4 32 238-271 36-67 (268)
479 2zts_A Putative uncharacterize 94.2 0.03 1E-06 51.8 3.9 25 245-269 27-51 (251)
480 3q3j_B RHO-related GTP-binding 94.2 0.023 7.7E-07 51.8 2.9 23 249-271 28-50 (214)
481 1puj_A YLQF, conserved hypothe 94.1 0.03 1E-06 53.8 3.8 28 248-275 120-147 (282)
482 3eph_A TRNA isopentenyltransfe 94.0 0.026 8.9E-07 56.9 3.3 25 248-272 2-26 (409)
483 2j0v_A RAC-like GTP-binding pr 94.0 0.025 8.5E-07 51.1 2.8 21 250-270 11-31 (212)
484 3ec1_A YQEH GTPase; atnos1, at 93.8 0.026 9.1E-07 56.4 2.7 25 247-271 161-185 (369)
485 3sr0_A Adenylate kinase; phosp 93.8 0.033 1.1E-06 50.9 3.2 23 250-272 2-24 (206)
486 3cmu_A Protein RECA, recombina 93.7 0.25 8.5E-06 59.2 11.2 34 236-269 1067-1102(2050)
487 4hlc_A DTMP kinase, thymidylat 93.6 0.039 1.3E-06 50.4 3.3 26 248-273 2-27 (205)
488 3l0i_B RAS-related protein RAB 93.6 0.01 3.6E-07 53.2 -0.6 23 250-272 35-57 (199)
489 3h2y_A GTPase family protein; 93.5 0.028 9.4E-07 56.2 2.3 26 247-272 159-184 (368)
490 3gj0_A GTP-binding nuclear pro 93.5 0.023 7.7E-07 51.8 1.5 21 250-270 17-38 (221)
491 2hjg_A GTP-binding protein ENG 93.5 0.034 1.2E-06 56.8 3.0 22 250-271 5-26 (436)
492 1wxq_A GTP-binding protein; st 93.5 0.036 1.2E-06 56.0 3.1 23 250-272 2-24 (397)
493 1a5t_A Delta prime, HOLB; zinc 93.4 0.31 1.1E-05 47.6 9.8 43 375-418 108-150 (334)
494 2x2e_A Dynamin-1; nitration, h 93.4 0.028 9.6E-07 55.7 2.2 23 250-272 33-55 (353)
495 2orw_A Thymidine kinase; TMTK, 93.3 0.032 1.1E-06 49.9 2.3 52 375-430 76-138 (184)
496 3th5_A RAS-related C3 botulinu 92.4 0.015 5.1E-07 52.3 0.0 22 249-270 31-52 (204)
497 3geh_A MNME, tRNA modification 93.2 0.033 1.1E-06 57.5 2.3 26 246-271 222-247 (462)
498 1mky_A Probable GTP-binding pr 93.0 0.076 2.6E-06 54.2 4.8 36 250-285 3-50 (439)
499 3p32_A Probable GTPase RV1496/ 93.0 0.037 1.3E-06 54.9 2.4 26 248-273 79-104 (355)
500 1tue_A Replication protein E1; 92.9 0.033 1.1E-06 50.9 1.7 28 245-272 55-82 (212)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-84 Score=753.45 Aligned_cols=455 Identities=20% Similarity=0.285 Sum_probs=364.9
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
+||+++|++.++..++..+..++..++.+++.++++++++|++++++++++++.++....+.+..+.......+..++..
T Consensus 856 ~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1321)
T 4f4c_A 856 STRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSG 935 (1321)
T ss_dssp HHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHH
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999888777776666555544433333333344556677
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCcc--HH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--LPGKHL--PG 156 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~g 156 (467)
.++.|+++|+++||+|+.|+++.++|.+..+...+...+......+...+...+..+...++.++... ..+..+ .+
T Consensus 936 ~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 1015 (1321)
T 4f4c_A 936 KIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPM 1015 (1321)
T ss_dssp HHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHH
T ss_pred HHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchH
Confidence 88999999999999999999999999998888777655544444333333322222222222222211 223333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CC
Q 044927 157 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TP 235 (467)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~ 235 (467)
.+...+.+......++..+...+..++.+..+.+|+.++++.+++.+. ...++..++..+.|+|+||+|+|+++ ..
T Consensus 1016 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~ 1092 (1321)
T 4f4c_A 1016 RVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEI 1092 (1321)
T ss_dssp HHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCCCCCC
Confidence 333333333333345555667778889999999999999987655332 12222334566789999999999754 34
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||+||
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcC---CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927 316 LDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392 (467)
Q Consensus 316 l~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~ 392 (467)
|.++ ..+++++++++++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|
T Consensus 1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 9764 3578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927 393 DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS 458 (467)
Q Consensus 393 ~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~ 458 (467)
|+.|++.|++..+++|+|+||||++++++||||+||++|+|+|.|+|+||++++|.|++|++.+..
T Consensus 1253 E~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp HHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999987753
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-82 Score=738.32 Aligned_cols=454 Identities=20% Similarity=0.274 Sum_probs=394.1
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.+++.+...+..++..++++++.++++++++|+++++++.++++..++...+.+..++..+...+..++..
T Consensus 196 ~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1321)
T 4f4c_A 196 ATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAG 275 (1321)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999887776666666666666666666666666778888
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 276 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~ 355 (1321)
T 4f4c_A 276 KVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDM 355 (1321)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 99999999999999999999999999988877766655544444444333333333333332222 1234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV 237 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~ 237 (467)
.+++.|...+..|+..+...+..++++.++++|+.++++.+++.+...... ..+.+..+.|+|+||+|+|++. ..++
T Consensus 356 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~I~~~nvsF~Y~~~~~~~v 433 (1321)
T 4f4c_A 356 LTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAG--RKDMKIKGDITVENVHFTYPSRPDVPI 433 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCC--CCCCCCCCCEEEEEEEECCSSSTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc--ccCCCCCCcEEEEEeeeeCCCCCCCce
Confidence 999999999999999999999999999999999999998765432211111 1122345689999999999753 4579
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~ 513 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS 513 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHH
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
++. .+++++++++|+.+++++++..+|+|+||.+||+|.+|||||||||+||||+++||+|||||||||+||+++|+.+
T Consensus 514 ~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i 593 (1321)
T 4f4c_A 514 LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593 (1321)
T ss_dssp TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH
T ss_pred hhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHH
Confidence 764 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
++.|++..+|+|+|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|+++++.+
T Consensus 594 ~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q 653 (1321)
T 4f4c_A 594 QQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQ 653 (1321)
T ss_dssp HHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhh
Confidence 999999889999999999999999999999999999999999999999999999999765
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-81 Score=672.77 Aligned_cols=455 Identities=24% Similarity=0.335 Sum_probs=387.0
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++...+..++..++.+++.++++++++|+++++++.++++..++..++.+..++..+...+..+++.
T Consensus 123 ~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (587)
T 3qf4_A 123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVN 202 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999998877666666655555555555555555666778899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 203 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~ 282 (587)
T 3qf4_A 203 RVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSI 282 (587)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHH
Confidence 99999999999999999999999999888877666555444433333333333333222222222 1234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.+++.|...+..++..+...+..++++.++++|+.++++.+++.+... .+....+..+.|+++||+|+|+++.+++|
T Consensus 283 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~---~~~~~~~~~~~i~~~~v~~~y~~~~~~~l 359 (587)
T 3qf4_A 283 MAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD---NALALPNVEGSVSFENVEFRYFENTDPVL 359 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCT---TCBCCSCCCCCEEEEEEEECSSSSSCCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC---CccccCCCCCcEEEEEEEEEcCCCCCcce
Confidence 999999999989999999999999999999999999998765432111 11111123467999999999976556799
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++|+||||+|++|++|++||+.+
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~ 439 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW 439 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTT
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
.. ..++++++++++.+++++++..+|+|++|.++++|.+||||||||++|||||+++|++||||||||+||+++++.++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~ 519 (587)
T 3qf4_A 440 GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL 519 (587)
T ss_dssp TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 54 46788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS 458 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~ 458 (467)
+.+++..+++|+|+||||++++..||||++|++|+|++.|+|+|+++.++.|+++++.+..
T Consensus 520 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 520 DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFG 580 (587)
T ss_dssp HHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC-
T ss_pred HHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHhc
Confidence 9999988899999999999999999999999999999999999999999999999887643
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.4e-79 Score=661.14 Aligned_cols=452 Identities=20% Similarity=0.335 Sum_probs=393.3
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++...+..++.+++.+++.++++++++|+++++++.++++.+++...+.+..++..+...+..+++.
T Consensus 125 ~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (582)
T 3b5x_A 125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT 204 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999887776666666666666666666666667778899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 205 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l 284 (582)
T 3b5x_A 205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTF 284 (582)
T ss_pred HHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999998888777766666666665555555444433333222 1224588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.+++.+...+..|+..+...+..++++..+++|+.++++.+++.+. ...+ .++..+.++++||+|+|+++.+++|
T Consensus 285 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~i~~~~v~~~y~~~~~~~l 359 (582)
T 3b5x_A 285 TVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GKYE--AERVNGEVDVKDVTFTYQGKEKPAL 359 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CCCC--CCCCCCeEEEEEEEEEcCCCCcccc
Confidence 9999999999999999999999999999999999999987654321 1111 1122457999999999975334699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|+++|||||+|.+|++|++||+.+
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 439 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 319 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 319 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
.. ..++++++++++.++++++++++|+|+||.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b5x_A 440 AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519 (582)
T ss_pred cCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 53 4678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR 457 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~ 457 (467)
.+.+++..+|+|+|+||||++.++.||||++|++|++++.|+|+|+++.++.|+++++.+.
T Consensus 520 ~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 520 QAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 9999998779999999999999999999999999999999999999998899999987653
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-81 Score=674.36 Aligned_cols=455 Identities=25% Similarity=0.346 Sum_probs=394.7
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++..+...+..++.+++.+++.++++++++|+++++++.++++.+++..++.+..++..+...+..+++.
T Consensus 137 ~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (598)
T 3qf4_B 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLN 216 (598)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999887777777666666777766666666677778899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+......++..+...++.++. ....|.+++|.+
T Consensus 217 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~ 296 (598)
T 3qf4_B 217 GIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTI 296 (598)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHH
T ss_pred HHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999888877776665555555554444444443333332222 223488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.+++.|...+..++..+...+..++++.++++|+.++++.+++.+.. . ....++..+.|+++||+|+|+++ +++|
T Consensus 297 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~-~~~~~~~~~~i~~~~v~~~y~~~-~~~l 371 (598)
T 3qf4_B 297 ATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP---D-AVELREVRGEIEFKNVWFSYDKK-KPVL 371 (598)
T ss_dssp HHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS---S-CCCCCSCCCCEEEEEEECCSSSS-SCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---C-CCCCCCCCCeEEEEEEEEECCCC-Cccc
Confidence 99988888888999999999999999999999999999876553211 1 11112335679999999999754 4599
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|+++|||||+|++|++||+||+.+
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~ 451 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY 451 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHS
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
.. ..++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++||||||||+||+++++.+.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~ 531 (598)
T 3qf4_B 452 GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531 (598)
T ss_dssp SSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 53 46778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHhhh
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSY 460 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~~~ 460 (467)
+.+++..+|+|+|+||||+++++.||||++|++|+|++.|+|+|+++.++.|++++..+....
T Consensus 532 ~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 594 (598)
T 3qf4_B 532 AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGLV 594 (598)
T ss_dssp HHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHGGG
T ss_pred HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhhh
Confidence 999998789999999999999999999999999999999999999999999999998766543
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.1e-81 Score=669.99 Aligned_cols=452 Identities=23% Similarity=0.316 Sum_probs=386.8
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++...+..++.+++.++++++++++++|+++++++.++++.+.+...+.+..++..+...+..+++.
T Consensus 121 ~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (578)
T 4a82_A 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQ 200 (578)
T ss_dssp HHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999988888888999999999999999999999887666666666666666666666666667778899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 201 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l 280 (578)
T 4a82_A 201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTL 280 (578)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHH
Confidence 99999999999999999999999999988877766655544444444333333333322222222 1223488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.+++.|...+..|+..+...+..++++..+++|+.++++.+++.+.. .......+..+.++++||+|+|+++.+++|
T Consensus 281 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l 357 (578)
T 4a82_A 281 AAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVSFQYNDNEAPIL 357 (578)
T ss_dssp HHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEEECSCSSSCCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEEEEcCCCCCcce
Confidence 99999999999999999999999999999999999999876543211 111111123467999999999976555799
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|+++|||||+|++|++|++||+.+
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~ 437 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGG
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
.. ..++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++||||||||+||+++++.+.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~ 517 (578)
T 4a82_A 438 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517 (578)
T ss_dssp GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 43 46788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~ 455 (467)
+.+++..+++|+|+||||+++++.||||++|++|+|++.|+|+|+++.++.|+++++.
T Consensus 518 ~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~ 575 (578)
T 4a82_A 518 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 575 (578)
T ss_dssp HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 9999988899999999999999999999999999999999999999998999888753
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.1e-79 Score=662.02 Aligned_cols=451 Identities=20% Similarity=0.284 Sum_probs=392.2
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++.++...+..++.+++.+++.++++++++|+++++++.++++.+++...+.+..++..+...+..+++.
T Consensus 125 ~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (582)
T 3b60_A 125 LSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVT 204 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999998887766666666666666666666666667788899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--LPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++... ..|.+++|.+
T Consensus 205 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l 284 (582)
T 3b60_A 205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTI 284 (582)
T ss_dssp HHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHH
T ss_pred HHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999998888877776666666666655555544443333322221 2378999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L 238 (467)
.+++.|...+..|+..+...+..++++..+++|+.++++.+++.+. ...+ .++..+.|+++||+|+|+++.+++|
T Consensus 285 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~i~~~~v~~~y~~~~~~~l 359 (582)
T 3b60_A 285 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GKRV--IDRATGDLEFRNVTFTYPGREVPAL 359 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CCBC--CSCCCCCEEEEEEEECSSSSSCCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CCCC--CCCCCCcEEEEEEEEEcCCCCCccc
Confidence 9999999999999999999999999999999999999987654321 1111 1122457999999999974324699
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~ 318 (467)
+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++++||||+|.+|++|++||+.+
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 439 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY 439 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 319 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 319 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
.. ..++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++||||||||+||+++++.+
T Consensus 440 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b60_A 440 ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_dssp TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 53 4678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
.+.+++..+|+|+|+||||++.++.||||++|++|++++.|+|+|+++.++.|+++++.+
T Consensus 520 ~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b60_A 520 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579 (582)
T ss_dssp HHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred HHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999998777999999999999999999999999999999999999999889999988754
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-78 Score=655.39 Aligned_cols=454 Identities=26% Similarity=0.345 Sum_probs=374.6
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++..+...+..++..++.+++.++++++++|+++++++.++++..++...+.+..++..+...+..+++.
T Consensus 122 ~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (595)
T 2yl4_A 122 INRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQAT 201 (595)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999998877666666555555555555555565666677889
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 158 (467)
+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++ .....|.+++|.+
T Consensus 202 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l 281 (595)
T 2yl4_A 202 QLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGEL 281 (595)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999988888777666555555555444444433333222222 1234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCccc-EEEEeEEEEeCCC-CCc
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGR-IELEDLKVRYRPN-TPL 236 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~vs~~y~~~-~~~ 236 (467)
.+++.|...+..|+..+...+..++++..+++|+.++++.+++.+.. ....+ ..+..+. |+++||+|+|+++ ..+
T Consensus 282 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~--~~~~~~~~i~~~~v~~~y~~~~~~~ 358 (595)
T 2yl4_A 282 SSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN-EGVIL--NEKSFQGALEFKNVHFAYPARPEVP 358 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS-CSBCC--CTTTCCCCEEEEEEEEECSSCTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC-CCCCC--CcCCCCCeEEEEEEEEEeCCCCCCc
Confidence 99999999999999999999999999999999999999876543211 11111 0122456 9999999999743 246
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++++||||+|.+|++|++||+
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 438 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 438 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHH
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCC-C---CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927 317 DPLG-M---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392 (467)
Q Consensus 317 ~~~~-~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~ 392 (467)
.+.. . .++++++++++.++++++++++|+|++|.+|++|.+||||||||++|||||+++|++||||||||+||+++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~ 518 (595)
T 2yl4_A 439 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518 (595)
T ss_dssp HTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHH
T ss_pred hhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHH
Confidence 7643 2 56788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc-cCchHHHHHHHHH
Q 044927 393 DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME-TNSAFSKLVAEYR 457 (467)
Q Consensus 393 ~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~-~~~~~~~l~~~~~ 457 (467)
++.+.+.+++..+++|+|+||||++.++.||||++|++|+|++.|+|+|+++ .++.|+++++.+.
T Consensus 519 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 519 EYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C----------
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhh
Confidence 9999999999767899999999999999999999999999999999999998 4888999887654
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.3e-76 Score=683.69 Aligned_cols=454 Identities=22% Similarity=0.287 Sum_probs=384.1
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++..++..+..++.+++++++.++++++++|++++++++++++.+++..++.+..++..+...+..++..
T Consensus 168 ~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1284)
T 3g5u_A 168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAG 247 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999888877777777766777766666666677788899
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 158 (467)
+++.|+++|+++||+|+.|+++.++|.+..++..+...+.............++..+...++.++. ....|.+++|.+
T Consensus 248 ~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~ 327 (1284)
T 3g5u_A 248 AVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV 327 (1284)
T ss_dssp HTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCH
T ss_pred HHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999888877665544433333333333333322222222221 123477788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV 237 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~ 237 (467)
.+++.+......++..+...+..++.+.++++|+.++++.+++.+........+ .+..+.|+++||+|+|+++ ..++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~~~y~~~~~~~v 405 (1284)
T 3g5u_A 328 LTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEFKNIHFSYPSRKEVQI 405 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC--TTCCCCEEEEEEEECCSSTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCC--CCCCCeEEEEEEEEEcCCCCCCcc
Confidence 666666666667777788888899999999999999998655432111111111 1235689999999999753 3469
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+.+++.+++|++||||||+|++|++||+|||.
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~ 485 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR 485 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHH
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
++. ..++++++++++.+++++++.++|+|++|.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+
T Consensus 486 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i 565 (1284)
T 3g5u_A 486 YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV 565 (1284)
T ss_dssp HHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 643 5788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
++.+++..+|+|+|+||||++++..||+|+||++|+|++.|+|+|+++.++.|.+++..+
T Consensus 566 ~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 625 (1284)
T 3g5u_A 566 QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQ 625 (1284)
T ss_dssp HHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHh
Confidence 999998878999999999999999999999999999999999999999999999887644
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.2e-73 Score=656.49 Aligned_cols=456 Identities=20% Similarity=0.270 Sum_probs=365.8
Q ss_pred CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927 1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 80 (467)
Q Consensus 1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
++|+++|++.++..++..+..++..++.+++.++++++++|+++++++.++++.+++...+.+..+.......+..+...
T Consensus 811 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1284)
T 3g5u_A 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999988776555555444333333333333333333445566
Q ss_pred HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccHHHH
Q 044927 81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--LPGKHLPGFV 158 (467)
Q Consensus 81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~ 158 (467)
..+.|+++|+++||+|+.|+++.++|.+..+...+...+......+.......+..+...++.++... ..+.++.+.+
T Consensus 891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 970 (1284)
T 3g5u_A 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV 970 (1284)
T ss_dssp HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 78999999999999999999999999888877655544433332222222222222222222222111 1256676666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927 159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV 237 (467)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~ 237 (467)
..++.+......++..+......++.+..+.+|+.++++.+++........ ..+++..+.++++||+|+|++. ..++
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~~v~~~y~~~~~~~~ 1048 (1284)
T 3g5u_A 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQG--LKPNMLEGNVQFSGVVFNYPTRPSIPV 1048 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSC--CCTTTTSCCEEEEEEEBCCSCGGGCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc--ccccCCCCcEEEEEEEEECCCCCCCee
Confidence 666555555555555555556667888999999999998765432211111 1112335689999999999743 2359
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||+|.+|++||+||+.
T Consensus 1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~ 1128 (1284)
T 3g5u_A 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128 (1284)
T ss_dssp BSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHT
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927 318 PLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394 (467)
Q Consensus 318 ~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~ 394 (467)
+.. ..++++++++++.+++++++.++|+||||.+|++|.+||||||||++|||||+++|+|||||||||+||+++++
T Consensus 1129 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~ 1208 (1284)
T 3g5u_A 1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208 (1284)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 643 35788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS 458 (467)
Q Consensus 395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~ 458 (467)
.+++.|++..+|+|+|+||||++++..||||+||++|+|++.|+|+|+++.+|.|++|++.+..
T Consensus 1209 ~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp HHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999988899999999999999999999999999999999999999999999999987643
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.7e-68 Score=523.91 Aligned_cols=278 Identities=24% Similarity=0.411 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcC
Q 044927 177 RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGR 256 (467)
Q Consensus 177 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~ 256 (467)
.++..++.+.++++|++++++.+++...... .....+..+.|+++||+|+|+++ .++|+|+||+|++||++||+||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~---~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~ 88 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLPG---AGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGP 88 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCCTT---CBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESS
T ss_pred ccchhHHHHHHHHHHHHHHHhCCcccccccc---ccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECC
Confidence 3456778889999999999875433211111 01111234579999999999744 4699999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcC
Q 044927 257 TGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQ 335 (467)
Q Consensus 257 sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~ 335 (467)
||||||||+++|+|+++|++|+|.+||+++..++..++|++||||||+|.+|++||+|||.+.. ..++++++++++.++
T Consensus 89 sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~ 168 (306)
T 3nh6_A 89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168 (306)
T ss_dssp SCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999998654 467888999999999
Q ss_pred hHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccC
Q 044927 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR 415 (467)
Q Consensus 336 l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 415 (467)
+.+++..+|.|++|.++++|.+||||||||++|||||+++|+|||||||||+||+.++..+++.|++..+++|+|+||||
T Consensus 169 l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~ 248 (306)
T 3nh6_A 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248 (306)
T ss_dssp CHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred cHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998778999999999
Q ss_pred hhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927 416 VPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS 458 (467)
Q Consensus 416 l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~ 458 (467)
++++..||||++|++|+|++.|+|+++++.++.|+++++.+..
T Consensus 249 l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 249 LSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291 (306)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred hHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987754
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.6e-59 Score=447.38 Aligned_cols=237 Identities=31% Similarity=0.527 Sum_probs=219.0
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 46999999999943234699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 299 SIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 299 ~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
|||||+|.+|+.|++||+.+.. ..+++++.++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999997643 345677889999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHHH
Q 044927 378 ILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAE 455 (467)
Q Consensus 378 iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~ 455 (467)
+|||||||++||+.++..+.+.|++..+++|+|+|||+++.+..|||+++|++|++++.|+++++.+. .+.|.+++..
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999987668999999999999888999999999999999999999876 7788877654
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.2e-57 Score=439.28 Aligned_cols=237 Identities=31% Similarity=0.498 Sum_probs=217.9
Q ss_pred ccEEEEeEEEEeCCCC-CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 219 GRIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~-~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
+.|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3599999999996432 3599999999999999999999999999999999999987 8999999999988888888999
Q ss_pred cEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 298 LSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 298 i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
|+||||+|.+|+.|++||+.+.. ...++++.++++.+++.+++..+|+++++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999997542 24567788899999999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 377 RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
++|||||||++||+.++..+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++..+.|.+++...
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999999877899999999999988899999999999999999999988778888877655
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.7e-57 Score=442.28 Aligned_cols=239 Identities=28% Similarity=0.448 Sum_probs=216.1
Q ss_pred ccEEEEeEEEEeCC-CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 219 GRIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 219 ~~i~~~~vs~~y~~-~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
+.|+++||+|+|++ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964 12459999999999999999999999999999999999999999999999999988777788889
Q ss_pred cEEEcCCCccccccHHHhcCcCC-CCCH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 298 LSIIPQEPTLFRGSVRTNLDPLG-MYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 298 i~~v~Q~~~lf~~tv~enl~~~~-~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
|+||||++.+|+.|++||+.+.. .... +++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997643 2333 566777888899999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~ 453 (467)
|++|||||||++||+.++..+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|.+++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999999998753 899999999999988899999999999999999999998778888887
Q ss_pred HHHH
Q 044927 454 AEYR 457 (467)
Q Consensus 454 ~~~~ 457 (467)
+...
T Consensus 255 ~~~~ 258 (271)
T 2ixe_A 255 EALA 258 (271)
T ss_dssp HC--
T ss_pred HHhh
Confidence 6553
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-58 Score=442.17 Aligned_cols=233 Identities=28% Similarity=0.544 Sum_probs=213.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999533 459999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCccccccHHHhcCcC-C-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 301 IPQEPTLFRGSVRTNLDPL-G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~-~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
|||++.+|+.|++||+.+. . ...++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999864 2 3456778899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927 379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~ 454 (467)
|||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..+.|.+++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 236 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHH
Confidence 9999999999999999999999886678999999999998888999999999999999999999876666665554
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-56 Score=454.83 Aligned_cols=231 Identities=37% Similarity=0.672 Sum_probs=216.5
Q ss_pred CCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH
Q 044927 215 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 294 (467)
Q Consensus 215 ~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~ 294 (467)
|+..+.|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++..++...+
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 44556799999999996444569999999999999999999999999999999999998 89999999999999999999
Q ss_pred hcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 295 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
|+.+|||||++.+|+.|++||+.+.....+++++++++.+++.+++++.|.++++.+++.+.+||||||||++|||||++
T Consensus 93 rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred hCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998655567888999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
+|++||||||||+||+.++..+++.|++...++|+|+|||+++.+..||||++|++|+|++.|+|+++....
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999877789999999999988889999999999999999999998743
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9e-55 Score=414.58 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=197.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
+.|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999964344699999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 299 ~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
+|+||+|.+|+.|++||+.+.....+....++++.+++.+++..+|.+.++.+++.+.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999976433444556677888899999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHH-HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHH
Q 044927 379 LVLDEATASIDSATDAILQRII-REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l 452 (467)
|||||||++||+.+++.+.+.+ ++..+++|+|++||+++.+..||++++|++|++++.|+++++.+..+.|.++
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 226 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHH
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence 9999999999999999999874 5555589999999999998889999999999999999999998765555544
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.3e-55 Score=418.79 Aligned_cols=226 Identities=25% Similarity=0.417 Sum_probs=203.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++||+|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 4899999999964334699999999999999999999999999999999999999999999998 499
Q ss_pred EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
||||+|.+|..|++||+.+.....++...++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999999764433444566777888888888888999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHH---HHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 380 VLDEATASIDSATDAILQRIIR---EEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
||||||++||+.++..+.+.+. +..+++|+|++||+++.+..||++++|++|++++.|+++++.+..+.|.+++..+
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 229 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHT
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHHHH
Confidence 9999999999999999999984 3445899999999999888899999999999999999999998888888887766
Q ss_pred Hh
Q 044927 457 RS 458 (467)
Q Consensus 457 ~~ 458 (467)
++
T Consensus 230 ~~ 231 (237)
T 2cbz_A 230 AS 231 (237)
T ss_dssp CC
T ss_pred Hh
Confidence 54
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.3e-54 Score=419.79 Aligned_cols=215 Identities=25% Similarity=0.427 Sum_probs=183.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~ 297 (467)
.|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++. ..+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 59999999999643 35999999999999999999999999999999999999999999999999984 2234567889
Q ss_pred cEEEcCCC--ccccccHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 298 LSIIPQEP--TLFRGSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 298 i~~v~Q~~--~lf~~tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
||||||+| .+|..||+||+.+. ...+. +++.++++.+++.+..+ ....+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHHH
Confidence 99999998 46778999999642 12233 23555666666654333 3347899999999999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|++++.|+++++++.
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998864 38999999999999875 999999999999999999999864
Q ss_pred C
Q 044927 446 N 446 (467)
Q Consensus 446 ~ 446 (467)
.
T Consensus 235 ~ 235 (275)
T 3gfo_A 235 K 235 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1e-53 Score=429.90 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=187.7
Q ss_pred ccEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---
Q 044927 219 GRIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD--- 293 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~--- 293 (467)
..|+++||+++|+.+ ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 469999999999643 235899999999999999999999999999999999999999999999999999888665
Q ss_pred HhcccEEEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 294 LRTKLSIIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
+|++||||||++.+|+. ||+||+.+. ...+. +++.++++.+++.+..++ ...+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~-----------~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-----------CTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHH
Confidence 47889999999998875 999999642 12232 345566666666554444 347899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 442 (467)
++|||||+.+|++||||||||+||+.++..+++.|+++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999863 38999999999999875 999999999999999999999
Q ss_pred hcc
Q 044927 443 MET 445 (467)
Q Consensus 443 ~~~ 445 (467)
++.
T Consensus 252 ~~~ 254 (366)
T 3tui_C 252 FSH 254 (366)
T ss_dssp HSS
T ss_pred HhC
Confidence 864
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-53 Score=407.80 Aligned_cols=213 Identities=23% Similarity=0.373 Sum_probs=178.4
Q ss_pred EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----
Q 044927 221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL---- 294 (467)
Q Consensus 221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~---- 294 (467)
|+++||+|+|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 358999999999999999999999999999999999999999999999999998887654
Q ss_pred hcccEEEcCCCccccc-cHHHhcCcC------CCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 295 RTKLSIIPQEPTLFRG-SVRTNLDPL------GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~~-tv~enl~~~------~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
|+++|||||+|.+|+. |++||+.+. ...+.+ ++.++++.+++.+.. ......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4569999999999876 999999531 122222 334455555443211 1344578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSK 441 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~ 441 (467)
||++|||||+.+|++|||||||++||+.++..+.+.++++. + |+|+|+|||+++.+..||||++|++|+|++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999999998864 3 899999999999877799999999999999998877
Q ss_pred Hh
Q 044927 442 LM 443 (467)
Q Consensus 442 l~ 443 (467)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-52 Score=398.67 Aligned_cols=217 Identities=25% Similarity=0.404 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i 298 (467)
.++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+++
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 5899999999964 459999999999999999999999999999999999999999999999999988776654 4569
Q ss_pred EEEcCCCccccc-cHHHhcCcCC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
+||||++.+|+. |++||+.+.. ....++..+.+ .+.++.++ |++...+....+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999887 9999996532 11222222211 12333332 344445556789999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|++|||||||++||+.+++.+.+.|++.. +|+|+|++||+++.+. .|||+++|++|++++.|+++++.+
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999999998864 5899999999998875 599999999999999999999875
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.2e-52 Score=406.32 Aligned_cols=213 Identities=24% Similarity=0.322 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.+.+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999963 45999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEcCCCcc-ccccHHHhcCcCCC-----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 300 IIPQEPTL-FRGSVRTNLDPLGM-----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 300 ~v~Q~~~l-f~~tv~enl~~~~~-----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
|++|++.+ |..|++||+.+... ...+++.++++.+++.+..++ ...+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHHh
Confidence 99999987 56799999964321 123456667777766443332 33679999999999999999
Q ss_pred C------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 374 K------RNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 374 ~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+ +|++|||||||+|||+.++..+.+.|+++. + ++|+|+|||+++.+.. ||||++|++|++++.|+++++++
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 999999999999999999999999998864 3 5799999999999875 99999999999999999999975
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 3
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4e-52 Score=403.56 Aligned_cols=213 Identities=26% Similarity=0.433 Sum_probs=183.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~ 297 (467)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 5999999999953 35999999999999999999999999999999999999999999999999985 3344567888
Q ss_pred cEEEcCCCccccc-cHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
+|||||++.+|+. |++||+.+. ...+. +++.++++.+++.+.. .....+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHH
Confidence 9999999998876 999999642 11222 2345556666554433 33447899999999999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. |||+++|++|++++.|+++++.+.
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999998863 48999999999999875 999999999999999999999764
No 25
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.1e-52 Score=416.74 Aligned_cols=214 Identities=23% Similarity=0.337 Sum_probs=183.2
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC--CHHHHhcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM--GLKDLRTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~ 297 (467)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+. .....+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999963 4599999999999999999999999999999999999999999999999998321 22345678
Q ss_pred cEEEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 298 LSIIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 298 i~~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
||||||++.+|+. ||+||+.+... .. .+++.++++.+++.++.++.| .+||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999975 99999975321 12 234566777777765555544 78999999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|||+.+|++||||||||+||+.++..+++.+.+. ..|+|+|+|||+++.+.. ||||++|++|+|++.|+++++....
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 9999999999999999999999999998877664 248999999999998865 9999999999999999999998643
No 26
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-51 Score=400.37 Aligned_cols=213 Identities=25% Similarity=0.408 Sum_probs=184.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----------C
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----------M 289 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~----------~ 289 (467)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4999999999953 359999999999999999999999999999999999999999999999999861 3
Q ss_pred CH---HHHhcccEEEcCCCccccc-cHHHhcCcCC----CCC----HHHHHHHHHHcChHHH-HHhCCCcccccccCCCC
Q 044927 290 GL---KDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKAT-ISRLPMLLDSSVSDEGE 356 (467)
Q Consensus 290 ~~---~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~----~~~----~~~~~~~~~~~~l~~~-i~~l~~g~~t~v~~~g~ 356 (467)
+. ..+|+++|||||++.+|+. |++||+.+.. ..+ .+++.++++.+++.+. .++.| .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc-----------c
Confidence 33 3467789999999998876 9999996421 122 2345667777777666 54443 6
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELV 434 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv 434 (467)
+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++.. +|+|+|+|||+++.+.. ||||++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998863 48999999999999874 9999999999999
Q ss_pred EecChhhHhcc
Q 044927 435 EYDLPSKLMET 445 (467)
Q Consensus 435 ~~g~~~~l~~~ 445 (467)
+.|+++++.+.
T Consensus 233 ~~g~~~~~~~~ 243 (262)
T 1b0u_A 233 EEGDPEQVFGN 243 (262)
T ss_dssp EEECHHHHHHS
T ss_pred EeCCHHHHHhC
Confidence 99999999764
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-51 Score=397.74 Aligned_cols=212 Identities=25% Similarity=0.420 Sum_probs=184.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
+.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 46999999999953 459999999999999999999999999999999999999999999999999876 456678899
Q ss_pred EEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|||||++.+|+. |++||+.+.. ..+. +++.++++.+++.+..+ ....+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999998876 9999996421 1222 23455666666554333 334789999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999998864 58999999999999886 99999999999999999999864
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.2e-52 Score=400.51 Aligned_cols=209 Identities=20% Similarity=0.295 Sum_probs=178.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 298 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i 298 (467)
.++++||+++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .+|+++
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999963 3599999999999999999999999999999999999999999999999999876643 457789
Q ss_pred EEEcCCCcccc-ccHHHhcCcCC-C---------------CC-H---HHHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927 299 SIIPQEPTLFR-GSVRTNLDPLG-M---------------YS-D---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 357 (467)
Q Consensus 299 ~~v~Q~~~lf~-~tv~enl~~~~-~---------------~~-~---~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~ 357 (467)
+||||++.+|. .|++||+.+.. . .. . +++.++++..+ ++........+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----------LSHLYDRKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcC-----------CchhhCCCchh
Confidence 99999999886 59999996421 1 11 1 12333444444 33444455678
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEE
Q 044927 358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVE 435 (467)
Q Consensus 358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~ 435 (467)
||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +|+|+|++||+++.+. .||||++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998863 4899999999999886 599999999999999
Q ss_pred ecChhh
Q 044927 436 YDLPSK 441 (467)
Q Consensus 436 ~g~~~~ 441 (467)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999998
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.2e-52 Score=392.84 Aligned_cols=206 Identities=24% Similarity=0.284 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh-
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR- 295 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r- 295 (467)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+ +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4899999999964 45999999999999999999999999999999999999999999999999998776543 33
Q ss_pred cccEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 296 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
++++||||++.+|+. |++||+.+.. ... .+++.++++.+++.+ .......+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-----------KLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-----------CTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence 679999999998864 9999996421 112 123444555555433 333445789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDL 438 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~ 438 (467)
|||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||++++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998863 4899999999999887799999999999999886
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.2e-51 Score=417.37 Aligned_cols=212 Identities=25% Similarity=0.334 Sum_probs=185.4
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999887765 46799
Q ss_pred EEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+. ||+||+.+. ...+. +++.++++.+++.++.++.| .+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHHH
Confidence 99999999975 999999753 12233 34556677777665544444 7899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|+.+|++||||||||+||+..+..+.+.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++++....
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999999998864 3 8999999999998865 9999999999999999999998643
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-51 Score=398.01 Aligned_cols=212 Identities=28% Similarity=0.381 Sum_probs=184.9
Q ss_pred cEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 044927 220 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~ 296 (467)
.++++||+++|+.+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 389999999996222 4599999999999999999999999999999999999999999999999988642 6788
Q ss_pred ccEEEcCCC--ccccccHHHhcCcCCC------CCHHHHHHHHHHcChH--HHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 297 KLSIIPQEP--TLFRGSVRTNLDPLGM------YSDNEIWEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 297 ~i~~v~Q~~--~lf~~tv~enl~~~~~------~~~~~~~~~~~~~~l~--~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
++|||||+| .++..|++||+.+... ...+++.++++.+++. ++.++.| .+||||||||+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv 147 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRV 147 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHH
Confidence 899999996 4567899999965321 1235677888888887 6655554 67999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+|||||+++|++|||||||++||+.++..+.+.|++.. +|+|+|++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998863 48999999999999875 99999999999999999999875
Q ss_pred c
Q 044927 445 T 445 (467)
Q Consensus 445 ~ 445 (467)
.
T Consensus 228 ~ 228 (266)
T 2yz2_A 228 K 228 (266)
T ss_dssp H
T ss_pred C
Confidence 3
No 32
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.2e-51 Score=401.57 Aligned_cols=214 Identities=24% Similarity=0.375 Sum_probs=178.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
+.++++||+|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 469999999864 2489999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927 299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378 (467)
Q Consensus 299 ~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i 378 (467)
+||||++.+|++|++||+. ..........++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999999997 323344455667788899999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHH-HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHH
Q 044927 379 LVLDEATASIDSATDAILQRII-REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450 (467)
Q Consensus 379 liLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~ 450 (467)
|||||||++||+.++..+.+.+ ++..+++|+|++||+++.+..||++++|++|++++.|+++++......|.
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 253 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFS 253 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHH
Confidence 9999999999999999999874 44446899999999999988899999999999999999999976444443
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-51 Score=410.96 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=185.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999953 4599999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+. |++||+.+... .+ ++++.++++.+++.++.++.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999875 99999975321 11 235667777777766555544 6899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||||++|++|+|++.|+++++.+..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988642 899999999999876 59999999999999999999998653
No 34
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-51 Score=391.78 Aligned_cols=207 Identities=23% Similarity=0.326 Sum_probs=177.2
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++||+++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..|+++||
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987543 34678999
Q ss_pred EcCCCccccc-cHHHhcCcCCCC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 301 IPQEPTLFRG-SVRTNLDPLGMY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~~~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
|||++.+|+. |++||+.+.... . .+++.++++.+++.++ ......+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-----------LDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTT-----------TTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999876 999999753221 1 2334455555554433 333447899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. |||+++|++|++++.|+++++.+.
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998864 28999999999998764 999999999999999999998764
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.1e-51 Score=410.21 Aligned_cols=213 Identities=26% Similarity=0.435 Sum_probs=184.9
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..|+++||+++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++|
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 369999999999322 348999999999999999999999999999999999999999999999999987654 36789
Q ss_pred EEEcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 299 SIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 299 ~~v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|||||++.+|+. ||+||+.+. ...+ ++++.++++.+++.++.++.| .+||||||||++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999999999875 999999652 1122 234566777777765555444 689999999999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 445 (467)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++++.+.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988642 8999999999998865 999999999999999999999864
No 36
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.7e-51 Score=398.90 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~ 297 (467)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999963 45999999999999999999999999999999999999999999999999987 6777788899
Q ss_pred cEEEcCCCcc-ccc--cHHHhcCcCCC--------CCH---HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927 298 LSIIPQEPTL-FRG--SVRTNLDPLGM--------YSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363 (467)
Q Consensus 298 i~~v~Q~~~l-f~~--tv~enl~~~~~--------~~~---~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~ 363 (467)
||||||++.+ |.. |++||+.+... ..+ +++.++++.+++.+. ......+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-----------AQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHH
Confidence 9999999865 444 99999965311 122 234445555555433 3344578999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceE--EEEccChhHHh-hcCEEEEEeCCEEEEecCh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTV--ITVAHRVPTIT-DSDMFMVLSYGELVEYDLP 439 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tv--i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 439 (467)
||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +|+|+ |+|||+++.+. .||||++|++|++++.|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999998864 38899 99999999886 5999999999999999999
Q ss_pred hhHhc
Q 044927 440 SKLME 444 (467)
Q Consensus 440 ~~l~~ 444 (467)
+++.+
T Consensus 248 ~~~~~ 252 (279)
T 2ihy_A 248 EDILT 252 (279)
T ss_dssp HHHCS
T ss_pred HHHhc
Confidence 99875
No 37
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.4e-50 Score=409.65 Aligned_cols=212 Identities=24% Similarity=0.357 Sum_probs=179.8
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999953 4599999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEcCCCccccc-cHHHhcCcCCC---CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM---YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+. ||+||+.+... .+. +++.++++.+++.++.++.| .+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999875 99999976421 222 34566777777665555444 7899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|+|++.|+++++....
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988642 799999999999876 59999999999999999999998643
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6e-51 Score=411.02 Aligned_cols=212 Identities=23% Similarity=0.368 Sum_probs=183.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. +++||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 3899999999953 4599999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 300 IIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
||||++.+|+. ||+||+.+. ...+. +++.++++.+++.++.++.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999652 11222 34556667766655444443 6899999999999999
Q ss_pred hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||||++|++|+|++.|+++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999988642 899999999999876 59999999999999999999998643
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-50 Score=407.45 Aligned_cols=210 Identities=24% Similarity=0.415 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
++++||+++|++ . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++|||
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999953 4 8999999999999999999999999999999999999999999999999987554 4678999
Q ss_pred EcCCCccccc-cHHHhcCcC----CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 301 IPQEPTLFRG-SVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 301 v~Q~~~lf~~-tv~enl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
|||++.+|+. ||+||+.+. +...++++.++++.+++.++.++.| .+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHcC
Confidence 9999999976 999999652 1122356777777777765554444 68999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN 446 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 446 (467)
|++||||||||+||+.++..+.+.|+++. .|+|+|+|||+++.+. .||||++|++|+|++.|+++++.+..
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999998863 3899999999999876 49999999999999999999998643
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.2e-51 Score=410.52 Aligned_cols=214 Identities=24% Similarity=0.377 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCc--eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHH
Q 044927 220 RIELEDLKVRYRPNTPL--VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDL 294 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~--~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~ 294 (467)
.|+++||+++|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 3899999999953 45 899999999999999999999999999999999999999999999999986521 2234
Q ss_pred hcccEEEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 295 RTKLSIIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+++||||||++.+|+. |++||+.+... .+ ++++.++++.+++.++.++.| .+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence 7789999999999975 99999975321 22 234566777777766555544 68999999999
Q ss_pred HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
+|||||+.+|++||||||||+||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++++.
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998864 28999999999998765 9999999999999999999998
Q ss_pred ccC
Q 044927 444 ETN 446 (467)
Q Consensus 444 ~~~ 446 (467)
+..
T Consensus 230 ~~p 232 (353)
T 1oxx_K 230 DNP 232 (353)
T ss_dssp HSC
T ss_pred hCc
Confidence 643
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.5e-50 Score=389.60 Aligned_cols=207 Identities=19% Similarity=0.261 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4899999986 3899999999999999999999999999999999999999 99999999998888888889999
Q ss_pred EEcCCCccccc-cHHHhcCcCCC--CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 300 IIPQEPTLFRG-SVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
||||++.+|.. |++||+.+... .+++++.++++..++.++.+ ....+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998865 99999975421 13566777777777755433 334789999999999999999999
Q ss_pred C-------EEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927 377 R-------ILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 377 ~-------iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+ +|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998863 4899999999999985 599999999999999999999875
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.1e-50 Score=409.13 Aligned_cols=212 Identities=22% Similarity=0.330 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC------CCHHH
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS------MGLKD 293 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~------~~~~~ 293 (467)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 4899999999953 459999999999999999999999999999999999999999999999999865 443
Q ss_pred HhcccEEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 294 LRTKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
.+++||||||++.+|+. |++||+.+.. ..+. +++.++++.+++.++.++.| .+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHH
Confidence 35789999999999864 9999996521 1222 34556677776655544444 7899999999
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 442 (467)
++|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|+|++.|+++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988642 899999999999886 4999999999999999999999
Q ss_pred hccC
Q 044927 443 METN 446 (467)
Q Consensus 443 ~~~~ 446 (467)
+...
T Consensus 228 ~~~p 231 (372)
T 1g29_1 228 YDKP 231 (372)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8643
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.1e-50 Score=385.31 Aligned_cols=209 Identities=22% Similarity=0.285 Sum_probs=171.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~-r~ 296 (467)
.++++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 4899999999963 4599999999999999999999999999999999999 89999999999999988776655 45
Q ss_pred ccEEEcCCCccccc-cHHHhcCcC-----CC-CC----HHHHHHHHHHcCh-HHHHHhCCCcccccccCCCCC-CChhHH
Q 044927 297 KLSIIPQEPTLFRG-SVRTNLDPL-----GM-YS----DNEIWEAMEKCQL-KATISRLPMLLDSSVSDEGEN-WSVGQR 363 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~-tv~enl~~~-----~~-~~----~~~~~~~~~~~~l-~~~i~~l~~g~~t~v~~~g~~-LSgGq~ 363 (467)
.++|+||+|.+|++ |++||+.+. .. .. .+++.++++..++ .+.. .....+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-----------SRYLNEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-----------GSBTTCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-----------cCCcccCCCHHHH
Confidence 69999999999876 999998532 11 11 1233444444444 1222 223356 999999
Q ss_pred HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEecChh
Q 044927 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYDLPS 440 (467)
Q Consensus 364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g~~~ 440 (467)
||++|||||+++|++|||||||++||+.++..+.+.|++.. +++|+|+|||+++.+.. |||+++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999875 48999999999999876 5999999999999999987
Q ss_pred h
Q 044927 441 K 441 (467)
Q Consensus 441 ~ 441 (467)
.
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.5e-49 Score=385.30 Aligned_cols=211 Identities=19% Similarity=0.244 Sum_probs=175.7
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 296 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~-r~ 296 (467)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999953 4599999999999999999999999999999999999 57899999999999987776655 45
Q ss_pred ccEEEcCCCccccc-cHHHhcCcC--------C--CCCHH----HHHHHHHHcChHHHHHhCCCcccc-cccCCCC-CCC
Q 044927 297 KLSIIPQEPTLFRG-SVRTNLDPL--------G--MYSDN----EIWEAMEKCQLKATISRLPMLLDS-SVSDEGE-NWS 359 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~-tv~enl~~~--------~--~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~-~LS 359 (467)
.++||||++.+|+. |+.+|+.+. . ..+.+ ++.++++..+ +++ ....... +||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~~LS 166 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK-----------MPEDLLTRSVNVGFS 166 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTT-----------CCTTTTTSBTTTTCC
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcC-----------CChhHhcCCcccCCC
Confidence 69999999998876 899988431 0 11222 2333344333 322 1222333 599
Q ss_pred hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEe
Q 044927 360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEY 436 (467)
Q Consensus 360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~ 436 (467)
||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. |||+++|++|++++.
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999874 48999999999998875 899999999999999
Q ss_pred cChhhHh
Q 044927 437 DLPSKLM 443 (467)
Q Consensus 437 g~~~~l~ 443 (467)
|+++++.
T Consensus 247 g~~~~~~ 253 (267)
T 2zu0_C 247 GDFTLVK 253 (267)
T ss_dssp ECTTHHH
T ss_pred cCHHHHh
Confidence 9998874
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-49 Score=383.00 Aligned_cols=206 Identities=23% Similarity=0.317 Sum_probs=177.3
Q ss_pred EEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 221 i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
++++|++++|++. .+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 1359999999999 9999999999999999999999999 9999999999998654 33 7789
Q ss_pred E-EEcCCCccccccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 299 S-IIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 299 ~-~v~Q~~~lf~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+ ||||++.+ ..|++||+.+.. ...++++.++++..++.+ ...+....+||||||||++|||||++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9 99999998 889999996421 233455666666665540 33344557899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcC-EEEEEeCCEEEEecChhhHhc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSD-MFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d-~i~vl~~G~iv~~g~~~~l~~ 444 (467)
+|++|||||||++||+.+++.+.+.|++..+ |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999988754 9999999999876 499 999999999999999999874
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.9e-49 Score=378.73 Aligned_cols=199 Identities=20% Similarity=0.314 Sum_probs=170.6
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999622 4599999999999999999999999999999999999999999998 356799
Q ss_pred EEcCCCccc-cccHHHhcCcCCC--------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 300 IIPQEPTLF-RGSVRTNLDPLGM--------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 300 ~v~Q~~~lf-~~tv~enl~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
||||++.+| ..|++||+.+... .. ++++.++++.+++.++.+ ....+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHH
Confidence 999999887 5699999965310 12 134556666666654333 334789999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|||||+++|++|||||||++||+.++..+.+.|++.. + |+|+|++||+++.+. .||++++|++|+ ++.|+++++.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999999999998864 3 899999999999985 599999999999 99999999874
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-48 Score=364.61 Aligned_cols=193 Identities=27% Similarity=0.400 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 6999999999963 5999999999999999999999999999999999999999999999999885 3578899
Q ss_pred EEcCCCccccc-cHHHhcCcC----C-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 300 IIPQEPTLFRG-SVRTNLDPL----G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 300 ~v~Q~~~lf~~-tv~enl~~~----~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
||||++.+|.. |++||+.+. + ...++++.++++.+++ +.. +....+||||||||++|||||+
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~-~~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-----------LDL-KKKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-----------CCT-TSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CcC-CCChhhCCHHHHHHHHHHHHHH
Confidence 99999998876 999999642 1 1224455566665544 333 4456789999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
++|++|||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||+++ +.+|+|
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999999999998864 47899999999999887 67766 445766
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.8e-40 Score=349.31 Aligned_cols=199 Identities=26% Similarity=0.312 Sum_probs=164.4
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..++++|+++.|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.++
T Consensus 286 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred eEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 35899999999953 3699999999999999999999999999999999999999999975 2369
Q ss_pred EEEcCCCcc-ccccHHHhcCcC--CC-CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 299 SIIPQEPTL-FRGSVRTNLDPL--GM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 299 ~~v~Q~~~l-f~~tv~enl~~~--~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+||||++.. +..||.+|+... .. ...+.+.++++..+ +.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 456998887421 00 11222333333333 3333344557899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHhc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLME 444 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~ 444 (467)
+|++|||||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999863 48999999999999875 999999996 78889999998864
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7.8e-40 Score=351.41 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=165.2
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..++++|++++|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.+ +.++
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 35899999999953 2699999999999999999999999999999999999999999976 2369
Q ss_pred EEEcCCCcc-ccccHHHhcCcC-C-CC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 299 SIIPQEPTL-FRGSVRTNLDPL-G-MY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 299 ~~v~Q~~~l-f~~tv~enl~~~-~-~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
||+||++.+ +..|+.+|+... . .. ..+.+.++++..++. ........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-----------DLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 466999988532 0 00 122333444444433 22334457899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHhc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLME 444 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~ 444 (467)
+|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++++.|+|+++++
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999863 48999999999999875 999999996 88889999998864
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.3e-39 Score=340.66 Aligned_cols=199 Identities=20% Similarity=0.246 Sum_probs=164.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..++++|+++.|++ ..|++.||++++||++||+||||||||||+++|+|+++|++|+|.+++ ..+
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 35899999999963 368888999999999999999999999999999999999999999765 358
Q ss_pred EEEcCCCcc-ccccHHHhcCcCC-C---CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 299 SIIPQEPTL-FRGSVRTNLDPLG-M---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 299 ~~v~Q~~~l-f~~tv~enl~~~~-~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
+|+||++.. +..|+++|+.... . .....+.++++..++.+ .......+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-----------LLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-----------CTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999764 4679999985321 1 12233444555555543 233445789999999999999999
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHh
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLM 443 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~ 443 (467)
++|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...+++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998863 48999999999999876 999999986 5666777776654
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.7e-38 Score=350.82 Aligned_cols=197 Identities=20% Similarity=0.286 Sum_probs=150.3
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~ 299 (467)
.++++|++|+|++..+++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|. .+++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 59999999999753346899999999999999999999999999999999999999999999862 1356
Q ss_pred EEcCCCcc-----ccc----------------------------------------------------------------
Q 044927 300 IIPQEPTL-----FRG---------------------------------------------------------------- 310 (467)
Q Consensus 300 ~v~Q~~~l-----f~~---------------------------------------------------------------- 310 (467)
|++|++.. ...
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 66655321 011
Q ss_pred --cHHHhcCcCC------------------------------------------CCCHHHHHHHHHHcChHHHHHhCCCc
Q 044927 311 --SVRTNLDPLG------------------------------------------MYSDNEIWEAMEKCQLKATISRLPML 346 (467)
Q Consensus 311 --tv~enl~~~~------------------------------------------~~~~~~~~~~~~~~~l~~~i~~l~~g 346 (467)
|++||+.+.. ....+++.+.++..++.+...
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~----- 894 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV----- 894 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH-----
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh-----
Confidence 2233332110 011233444455554432110
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEE
Q 044927 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMF 425 (467)
Q Consensus 347 ~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i 425 (467)
......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. |||+
T Consensus 895 ----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 895 ----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp ----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred ----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence 12334789999999999999999999999999999999999999999999875 5799999999999875 9999
Q ss_pred EEEeCCEEEEecC
Q 044927 426 MVLSYGELVEYDL 438 (467)
Q Consensus 426 ~vl~~G~iv~~g~ 438 (467)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987764
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-38 Score=334.94 Aligned_cols=197 Identities=23% Similarity=0.287 Sum_probs=162.1
Q ss_pred EeEEEEeCCCCCceecceeEEEeCC-----cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 224 EDLKVRYRPNTPLVLKGITCTFKEG-----TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl~i~~G-----e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
++++++|++. ..+++++||++++| |++||+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 6778899643 34799999999999 7899999999999999999999999999962 11 3469
Q ss_pred EEEcCCCc-cccccHHHhcCc--CCC-CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 299 SIIPQEPT-LFRGSVRTNLDP--LGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 299 ~~v~Q~~~-lf~~tv~enl~~--~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+|+||++. .|..|+++|+.. ... ...+...++++..++.+. ......+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999975 467799998742 111 233444455555554332 333457899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHhcc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLMET 445 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~~ 445 (467)
+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|+|+++++.
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999998853 48999999999999876 999999996 899999999999864
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.4e-38 Score=339.79 Aligned_cols=197 Identities=25% Similarity=0.354 Sum_probs=156.7
Q ss_pred cEEE--------EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE---------EEc
Q 044927 220 RIEL--------EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LID 282 (467)
Q Consensus 220 ~i~~--------~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i---------~i~ 282 (467)
.|++ +||+++|++. ..+|+|+| ++++||++||+||||||||||+++|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 3788 8999999643 24899999 999999999999999999999999999999999996 345
Q ss_pred CEeCCCCCHH--HHhcccEEEcCCCc----cccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCC
Q 044927 283 GLDICSMGLK--DLRTKLSIIPQEPT----LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 356 (467)
Q Consensus 283 g~~i~~~~~~--~~r~~i~~v~Q~~~----lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~ 356 (467)
|.++...... ..+..+++++|... ++.+|+.||+.... ..+++.++++..++.+..++ ...
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~~-----------~~~ 227 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDR-----------ELH 227 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGGS-----------BGG
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhCC-----------Chh
Confidence 6544321111 12346889998743 34469999985321 12345667777766544333 236
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYG 431 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G 431 (467)
+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|+++
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 799999999999999999999999999999999999999999998863 48999999999998875 9999999864
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.8e-38 Score=335.83 Aligned_cols=196 Identities=26% Similarity=0.313 Sum_probs=151.4
Q ss_pred EEE-EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE---------EEcCEeCCCCC
Q 044927 221 IEL-EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LIDGLDICSMG 290 (467)
Q Consensus 221 i~~-~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i---------~i~g~~i~~~~ 290 (467)
.++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 455 6999999643 24899999 999999999999999999999999999999999995 34564432211
Q ss_pred HHH--HhcccEEEcCCCcc----ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 291 LKD--LRTKLSIIPQEPTL----FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 291 ~~~--~r~~i~~v~Q~~~l----f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
... .+..+++++|+... +.+|+.+|+.... ..+++.++++..++.+.. .....+|||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~-----------~~~~~~LSgGekQ 165 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVL-----------EREIQHLSGGELQ 165 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTT-----------TSBGGGCCHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhh-----------hCChhhCCHHHHH
Confidence 111 13468899997543 3358888874211 123455666666654322 2234679999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYG 431 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G 431 (467)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999998853 48999999999999876 9999999864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.8e-36 Score=332.19 Aligned_cols=196 Identities=20% Similarity=0.259 Sum_probs=163.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
..+...|++++|++ +.+|+|+||++++|++++|+||||||||||+++|+| |+| +|.+.. . +.++
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----~--~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----E--ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----T--TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----c--ceeE
Confidence 35888899999963 459999999999999999999999999999999995 554 554331 1 1247
Q ss_pred EEEcCCC-ccc-cccHHHhcCcC-CCCCHHHHHHHHHHcCh-HHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 299 SIIPQEP-TLF-RGSVRTNLDPL-GMYSDNEIWEAMEKCQL-KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 299 ~~v~Q~~-~lf-~~tv~enl~~~-~~~~~~~~~~~~~~~~l-~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
+|++|++ .++ ..|+.||+... ... .+++.++++..++ .+..++.+ .+||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHhc
Confidence 8999985 444 45999998531 112 6678888898888 45555443 6799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-EecChhhHhc
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-EYDLPSKLME 444 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~~ 444 (467)
+|++|||||||++||+.+...+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++..
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999988 58999999999999875 9999999999997 6899998864
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.1e-37 Score=336.97 Aligned_cols=204 Identities=23% Similarity=0.292 Sum_probs=137.0
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------ccEEEEcCEeC
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------------------SALFRLVEPE-------NGRILIDGLDI 286 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll---------------------~~l~gl~~p~-------~G~i~i~g~~i 286 (467)
..+|+|+||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8999999998 45666666554
Q ss_pred CCCCHHHHhcccEEEcCCCccc--------------------cccHHHhcCcCCCC--CH--HHHH-----HHHHHcChH
Q 044927 287 CSMGLKDLRTKLSIIPQEPTLF--------------------RGSVRTNLDPLGMY--SD--NEIW-----EAMEKCQLK 337 (467)
Q Consensus 287 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~tv~enl~~~~~~--~~--~~~~-----~~~~~~~l~ 337 (467)
.. ..++.+++|+|.+.++ ..|++||+.+.... .+ .+.. ++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 2244566666654332 34899998653211 11 1110 111111
Q ss_pred HHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEc
Q 044927 338 ATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATASIDSATDAILQRIIREEF-PGSTVITVA 413 (467)
Q Consensus 338 ~~i~~l~~g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 413 (467)
+.+..+ |++.. ......+||||||||++|||||+.+|+ +|||||||++||+.+...+.+.|+++. .|+|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 122322 23221 234457899999999999999999998 999999999999999999999998863 589999999
Q ss_pred cChhHHhhcCEEEEE------eCCEEEEecChhhHhccCc
Q 044927 414 HRVPTITDSDMFMVL------SYGELVEYDLPSKLMETNS 447 (467)
Q Consensus 414 H~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~~ 447 (467)
|+++.+..||||++| ++|++++.|+++++.+...
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999988889999999 8999999999999987543
No 57
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.6e-41 Score=334.39 Aligned_cols=230 Identities=15% Similarity=0.119 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCC-CcccEEEEeEEEEeCCCC
Q 044927 156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWP-SHGRIELEDLKVRYRPNT 234 (467)
Q Consensus 156 g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~vs~~y~~~~ 234 (467)
+.+.+++.+..+ ..++..+...+..++++..+.+|+.++++.+++... . ...++ ..+.|+++||+|+|+
T Consensus 43 ~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~---~---~~~~~~~~~~i~~~~vs~~y~--- 112 (305)
T 2v9p_A 43 SNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT---G---EGSWKSILTFFNYQNIELITF--- 112 (305)
T ss_dssp HHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC---S---SCCTHHHHHHHHHTTCCHHHH---
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---C---CCcccccCCeEEEEEEEEEcC---
Confidence 334444444333 356667777888889999999999999975432211 0 01111 123589999999996
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
.++|+++||+|++|++++|+||||||||||+++|+|++ +|+| +++++|++.+|.+|+++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHH
Confidence 35999999999999999999999999999999999999 7988 35789999999999997
Q ss_pred -hcCcCCCCCHHHHHHHHHHcChHHHHHh-CCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927 315 -NLDPLGMYSDNEIWEAMEKCQLKATISR-LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392 (467)
Q Consensus 315 -nl~~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~ 392 (467)
|+.+....++ +++++++. +|+|++ |.+|||||||| |||++++|+||| ||+||+.+
T Consensus 172 ~ni~~~~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 172 TRAALVDDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp CSCEEEEEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred HhhccCccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 8876433332 23456666 888887 68999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927 393 DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456 (467)
Q Consensus 393 ~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~ 456 (467)
+..+.. +|||++.+..||+| +|++|+|++.|+|+++ ++.|++++...
T Consensus 229 ~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~ 275 (305)
T 2v9p_A 229 EDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRL 275 (305)
T ss_dssp CGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTT
T ss_pred HHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHc
Confidence 888752 39999999899999 9999999999999999 57787776543
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.3e-36 Score=332.04 Aligned_cols=202 Identities=25% Similarity=0.304 Sum_probs=145.9
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------cCCCCCccEEEEcCEeCCCCCHH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------------------RLVEPENGRILIDGLDICSMGLK 292 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~----------------------gl~~p~~G~i~i~g~~i~~~~~~ 292 (467)
..+|+|+||+|++||++||+||||||||||+++|+ |+.. .+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998754 3333 356899999887654321
Q ss_pred HHhc-----------------------------------------ccEEEcCCCccc-----------------------
Q 044927 293 DLRT-----------------------------------------KLSIIPQEPTLF----------------------- 308 (467)
Q Consensus 293 ~~r~-----------------------------------------~i~~v~Q~~~lf----------------------- 308 (467)
..+. ..|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1111 113333322211
Q ss_pred ----------cccHHHhcCcCCCCCH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC-
Q 044927 309 ----------RGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN- 376 (467)
Q Consensus 309 ----------~~tv~enl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p- 376 (467)
..|++||+.+...... ++..+.++.+++. +...+....+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLG----------YMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCT----------TSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCc----------hhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 2366666654322111 1222222222221 12345566899999999999999999887
Q ss_pred --CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCEEEEecChhhHhccCc
Q 044927 377 --RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGELVEYDLPSKLMETNS 447 (467)
Q Consensus 377 --~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~~ 447 (467)
++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+..||||++| ++|+|++.|+++++.+...
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 643 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCc
Confidence 5999999999999999999999998864 489999999999998889999999 8999999999999986443
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-36 Score=321.32 Aligned_cols=196 Identities=24% Similarity=0.330 Sum_probs=144.3
Q ss_pred eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-----------EEcCEeCCCCCHHH
Q 044927 225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGLKD 293 (467)
Q Consensus 225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-----------~i~g~~i~~~~~~~ 293 (467)
|++++|+.+. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .+.|.++..+....
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 5688997543 4688877 589999999999999999999999999999999998 23333222111122
Q ss_pred Hhccc--EEEcCCCcc----ccc---cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 294 LRTKL--SIIPQEPTL----FRG---SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 294 ~r~~i--~~v~Q~~~l----f~~---tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
+.+.+ .+.+|.... +.+ ++.+++........+++.++++..++.+..+ ....+|||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGe~Q 228 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK-----------RDIEKLSGGELQ 228 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC-----------CChHHCCHHHHH
Confidence 22333 233332211 111 3444443212223456666777666644333 344789999999
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i 433 (467)
|++|||||+++|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|..
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 9999999999999999999999999999999999999864 48999999999999876 999999998654
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-36 Score=319.50 Aligned_cols=193 Identities=21% Similarity=0.300 Sum_probs=146.5
Q ss_pred eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-----------EEcCEeCCCCCHHH
Q 044927 225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGLKD 293 (467)
Q Consensus 225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-----------~i~g~~i~~~~~~~ 293 (467)
+++.+|+.+.. .|.++.. +++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+....
T Consensus 4 ~~~~~~~~~~f-~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNGF-KLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTSC-EEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCce-eecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 56789976642 3444432 45899999999999999999999999999999998 57776553321111
Q ss_pred Hh------cccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927 294 LR------TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367 (467)
Q Consensus 294 ~r------~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~ 367 (467)
.. ..+.+++|.+.++.+++++++.... ..+++.++++..++.+..+ ....+||||||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~Qrv~ 148 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWN-----------KDANILSGGGLQRLL 148 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHH
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 11 1234444555566778888764211 1223456666666643322 233679999999999
Q ss_pred HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGE 432 (467)
Q Consensus 368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~ 432 (467)
|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999998779999999999998876 99999998754
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-34 Score=318.33 Aligned_cols=205 Identities=22% Similarity=0.298 Sum_probs=147.6
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHH---------HHHhcCCCC------Ccc------EEEEcCEeCCCCCH---
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------SALFRLVEP------ENG------RILIDGLDICSMGL--- 291 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll---------~~l~gl~~p------~~G------~i~i~g~~i~~~~~--- 291 (467)
..|+|+||+|++|++++|+||||||||||+ +++.+...+ .+| .+.+++.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 379999999999999999999999999997 344444333 233 35555555432210
Q ss_pred H-------HH-------------------------------hcccEEEcCCCccccc-----------------------
Q 044927 292 K-------DL-------------------------------RTKLSIIPQEPTLFRG----------------------- 310 (467)
Q Consensus 292 ~-------~~-------------------------------r~~i~~v~Q~~~lf~~----------------------- 310 (467)
. .. .+..|+++|+..+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 01 1235777777655432
Q ss_pred ----------cHHHhcCcCCCCC-HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC---
Q 044927 311 ----------SVRTNLDPLGMYS-DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN--- 376 (467)
Q Consensus 311 ----------tv~enl~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p--- 376 (467)
|+.|++.++.... ..+..++++.+++ ++ ..+++.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 2333332221110 1112222333222 21 3467888999999999999999999875
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCEEEEecChhhHhccCchH
Q 044927 377 RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGELVEYDLPSKLMETNSAF 449 (467)
Q Consensus 377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~~~~ 449 (467)
++|||||||+|||+.+++.+++.|+++. +|+|+|+|||+++.++.||+|++| ++|+|++.|+|+++++..+.|
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 7999999999999999999999998863 589999999999999999999999 899999999999999866555
Q ss_pred H
Q 044927 450 S 450 (467)
Q Consensus 450 ~ 450 (467)
.
T Consensus 908 t 908 (916)
T 3pih_A 908 T 908 (916)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=2.1e-33 Score=289.69 Aligned_cols=200 Identities=20% Similarity=0.181 Sum_probs=148.2
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------------CCccE
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--------------------------------------PENGR 278 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~--------------------------------------p~~G~ 278 (467)
++++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 699999999999 999999999999999999976653 45789
Q ss_pred EEEcCEeCCCCCHHHHhcc-cEEEcCCCccccccHHHhcCcCCCCCH---H-------HHHHHHHH--------------
Q 044927 279 ILIDGLDICSMGLKDLRTK-LSIIPQEPTLFRGSVRTNLDPLGMYSD---N-------EIWEAMEK-------------- 333 (467)
Q Consensus 279 i~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~enl~~~~~~~~---~-------~~~~~~~~-------------- 333 (467)
+++||.+++..+..++.+. +++++|++.++..+..++..+...... . ++.++.++
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999876666677666 799999988765544333211111000 0 00000000
Q ss_pred ----------------------------------cChHHHHHhC--CC----------------cccc---cccCCCCC-
Q 044927 334 ----------------------------------CQLKATISRL--PM----------------LLDS---SVSDEGEN- 357 (467)
Q Consensus 334 ----------------------------------~~l~~~i~~l--~~----------------g~~t---~v~~~g~~- 357 (467)
..+.+.+..+ |. |.+. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 0011112222 11 2111 23334433
Q ss_pred -------CChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927 358 -------WSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL 428 (467)
Q Consensus 358 -------LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl 428 (467)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 7999999999999999999 9999999999999999999999999987789999999999988889999999
Q ss_pred ----eCCEEEEec
Q 044927 429 ----SYGELVEYD 437 (467)
Q Consensus 429 ----~~G~iv~~g 437 (467)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.98 E-value=4.8e-33 Score=306.62 Aligned_cols=214 Identities=23% Similarity=0.293 Sum_probs=154.9
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-cCC-------CCCcc-------------
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLV-------EPENG------------- 277 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~-------~p~~G------------- 277 (467)
..++++|++. ..|+|+||+|++||++||+|+||||||||++.++ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 3588998852 2699999999999999999999999999999864 211 12233
Q ss_pred EEEEcCEeCCCCC---HH-------HH---------hcccEEEcCCCccc------------------------------
Q 044927 278 RILIDGLDICSMG---LK-------DL---------RTKLSIIPQEPTLF------------------------------ 308 (467)
Q Consensus 278 ~i~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~lf------------------------------ 308 (467)
.|.++|.++...+ +. .. .+.+||++|.+.+-
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788888774321 11 11 13468888854321
Q ss_pred -------------------------cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhH
Q 044927 309 -------------------------RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ 362 (467)
Q Consensus 309 -------------------------~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq 362 (467)
..|+.||+.++.... ++.+ ..+.+..+ |+.. ..+....+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIKR------KLETLYDV--GLGYMKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHHH------HHHHHHHT--TCSSSBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHHH------HHHHHHHc--CCCcccccCchhhCCHHH
Confidence 012222322211110 0100 12334443 4444 5667778999999
Q ss_pred HHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCE
Q 044927 363 RQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGE 432 (467)
Q Consensus 363 ~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~ 432 (467)
||||+|||+|+++| ++|||||||+|||+.+...+.+.|+++. .|.|||+|||+++.+..||||++| ++|+
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCE
Confidence 99999999999875 9999999999999999999999998864 589999999999998889999999 7899
Q ss_pred EEEecChhhHhccCchH
Q 044927 433 LVEYDLPSKLMETNSAF 449 (467)
Q Consensus 433 iv~~g~~~~l~~~~~~~ 449 (467)
|++.|+++++.+....|
T Consensus 931 Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 931 IVAVGTPEEVAEVKESH 947 (972)
T ss_dssp EEEEESHHHHHTCTTCH
T ss_pred EEEecCHHHHHhCchhH
Confidence 99999999998754433
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.98 E-value=7e-33 Score=304.90 Aligned_cols=215 Identities=24% Similarity=0.311 Sum_probs=154.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHH-HhcCC-------CC----------------
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISA-LFRLV-------EP---------------- 274 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~-l~gl~-------~p---------------- 274 (467)
..++++|+++ .+|+|+||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 4599999975 15999999999999999999999999999996 66543 23
Q ss_pred --Ccc-------EEEEcCEeCCCCCH----------HHHhccc---------EEEcCCCc--------------------
Q 044927 275 --ENG-------RILIDGLDICSMGL----------KDLRTKL---------SIIPQEPT-------------------- 306 (467)
Q Consensus 275 --~~G-------~i~i~g~~i~~~~~----------~~~r~~i---------~~v~Q~~~-------------------- 306 (467)
.+| .|.++|.++...+. ..+|+.+ ||.++...
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899988754322 2233322 33222110
Q ss_pred --c------------------------cc-ccHHHhcCcCCCCCHHHHHHHH----HHcChHHHHHhCCCcccc-cccCC
Q 044927 307 --L------------------------FR-GSVRTNLDPLGMYSDNEIWEAM----EKCQLKATISRLPMLLDS-SVSDE 354 (467)
Q Consensus 307 --l------------------------f~-~tv~enl~~~~~~~~~~~~~~~----~~~~l~~~i~~l~~g~~t-~v~~~ 354 (467)
+ +. .|+.||+.+. -.+..... +.....+.+..+ |+.. .++..
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~lt----v~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~ 727 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALT----VDEAHDFFADESAIFRALDTLREV--GLGYLRLGQP 727 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCB----HHHHHHHTTTSHHHHHHHHHHHHT--TCTTSBTTCC
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhcc----HHHHHHHhhcchHHHHHHHHHHHc--CCCcccccCC
Confidence 0 11 1444544211 00000000 000122334443 3333 35667
Q ss_pred CCCCChhHHHHHHHHHHhcCC---CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEEEE--
Q 044927 355 GENWSVGQRQLFCLGRVLLKR---NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFMVL-- 428 (467)
Q Consensus 355 g~~LSgGq~Qrl~iARal~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl-- 428 (467)
..+|||||||||+|||+|+++ |++|||||||+|||+...+.+.+.|+++ ..|.|||+|||+++.+..||||++|
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p 807 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGP 807 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECS
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECC
Confidence 789999999999999999996 7999999999999999999999999886 3589999999999999889999999
Q ss_pred ----eCCEEEEecChhhHhccC
Q 044927 429 ----SYGELVEYDLPSKLMETN 446 (467)
Q Consensus 429 ----~~G~iv~~g~~~~l~~~~ 446 (467)
++|+|++.|+++++.+..
T Consensus 808 ~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 808 GAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp SSGGGCCSEEEEECHHHHTTCT
T ss_pred CCCCCCCEEEEEcCHHHHHhCc
Confidence 799999999999998654
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-36 Score=315.65 Aligned_cols=190 Identities=14% Similarity=0.046 Sum_probs=150.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-E-EEEcCEeCCCCCHHHHhcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-R-ILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~-i~i~g~~i~~~~~~~~r~~ 297 (467)
.++++||+|+| .++||++++|++++|+||||||||||+|+|+|+++|++| + |++|| + .|+.
T Consensus 118 mi~~~nl~~~y--------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFML--------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHH--------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehh--------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 35666666666 279999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred cEEEcCCCcccc----ccHHHhcCcCCCC-----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 298 LSIIPQEPTLFR----GSVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 298 i~~v~Q~~~lf~----~tv~enl~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
++++||++.+|. .|++||+ +.... ..+++.++++.+ |++.... ..+||||||||++|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence 999999986543 4899998 43221 111111222222 3333332 57899999999999
Q ss_pred HHH--hcCCCCE----EEeeC-CCCCCCHHHHHHHHHHHHHHCCCceEEEEccChh------HHh-hcCE-----EEEEe
Q 044927 369 GRV--LLKRNRI----LVLDE-ATASIDSATDAILQRIIREEFPGSTVITVAHRVP------TIT-DSDM-----FMVLS 429 (467)
Q Consensus 369 ARa--l~~~p~i----liLDE-pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~------~~~-~~d~-----i~vl~ 429 (467)
||| |+.+|++ ||||| ||++||+. ...+.+.+++. ++|+|+|+|+.+ .+. .||| |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 66777777664 679999999887 554 4999 99999
Q ss_pred -CCEEEEecChhhHhc
Q 044927 430 -YGELVEYDLPSKLME 444 (467)
Q Consensus 430 -~G~iv~~g~~~~l~~ 444 (467)
+|+++ .|+++++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 999988753
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=2.6e-32 Score=301.78 Aligned_cols=214 Identities=22% Similarity=0.320 Sum_probs=152.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-c----CCC---CCccE------------
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-R----LVE---PENGR------------ 278 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-g----l~~---p~~G~------------ 278 (467)
..++++|++. .+|+|+||+|++|+++||+|+||||||||++.|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 3589999851 2699999999999999999999999999999864 2 221 23343
Q ss_pred -EEEcCEeCCCC---CHH-------HH---------hcccEEEcCCCcc---------------------c---------
Q 044927 279 -ILIDGLDICSM---GLK-------DL---------RTKLSIIPQEPTL---------------------F--------- 308 (467)
Q Consensus 279 -i~i~g~~i~~~---~~~-------~~---------r~~i~~v~Q~~~l---------------------f--------- 308 (467)
|.+++.++... ++. .. .+..||+||...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 45566555321 111 11 2346888875422 0
Q ss_pred ----------------c-ccHHH--------hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhH
Q 044927 309 ----------------R-GSVRT--------NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ 362 (467)
Q Consensus 309 ----------------~-~tv~e--------nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq 362 (467)
. .++.+ ++.++.... .+.+ ..+.+..+ |+.. ..+....+|||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~--~~~~------~~~~L~~l--gL~~~~l~~~~~~LSGGe 868 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA--GVHR------YLRTLVDV--GLGYVRLGQPAPTLSGGE 868 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH--HHHH------HHHHHHHT--TGGGSBTTCCGGGSCHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch--HHHH------HHHHHHHc--CCCcccccCccccCCHHH
Confidence 0 02222 222111110 0000 12334443 4444 5667778999999
Q ss_pred HHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCE
Q 044927 363 RQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGE 432 (467)
Q Consensus 363 ~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~ 432 (467)
||||+|||+|+++| ++|||||||+|||+.+...+.+.|+++. .|.|||+|||+++.+..||||++| ++|+
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~ 948 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGT 948 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSE
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCE
Confidence 99999999999875 9999999999999999999999998863 589999999999999889999999 6899
Q ss_pred EEEecChhhHhccCchH
Q 044927 433 LVEYDLPSKLMETNSAF 449 (467)
Q Consensus 433 iv~~g~~~~l~~~~~~~ 449 (467)
|++.|+++++.+....|
T Consensus 949 Iv~~G~~~el~~~~~~~ 965 (993)
T 2ygr_A 949 VVAQGTPEDVAAVPASY 965 (993)
T ss_dssp EEEEECHHHHHHCTTCH
T ss_pred EEEecCHHHHHhCCHHH
Confidence 99999999998754444
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.1e-29 Score=251.62 Aligned_cols=203 Identities=17% Similarity=0.242 Sum_probs=141.4
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC----------------------------------------------
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV---------------------------------------------- 272 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~---------------------------------------------- 272 (467)
+++++++.+| +.+|+||||||||||+++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678899999 99999999999999999998443
Q ss_pred ----CCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc-cccHHHhcCcCCC----C------------CHHHHHHHH
Q 044927 273 ----EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGM----Y------------SDNEIWEAM 331 (467)
Q Consensus 273 ----~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~enl~~~~~----~------------~~~~~~~~~ 331 (467)
.+.+|++++||.++...+...+...+++.||+..++ .+++.+|+...+. . ..+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344578999999875444556666788889987765 6788888753211 0 001121111
Q ss_pred HHc------------ChH-HHHHhCCCccccccc------CCCCCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCC
Q 044927 332 EKC------------QLK-ATISRLPMLLDSSVS------DEGENWSVGQRQLFCLGRVLL----KRNRILVLDEATASI 388 (467)
Q Consensus 332 ~~~------------~l~-~~i~~l~~g~~t~v~------~~g~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~L 388 (467)
+.. .+. .....++.|+++.++ .....||||||||++|||||+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 000 011223445554332 234689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEE--EEEeCCEE-EEecChhhH
Q 044927 389 DSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMF--MVLSYGEL-VEYDLPSKL 442 (467)
Q Consensus 389 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i--~vl~~G~i-v~~g~~~~l 442 (467)
|+.....+.+.+++..+++|+|++||+++....||++ ++|++|+. +.....++.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999887788999999998877789987 88888854 444444443
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=3.5e-31 Score=247.84 Aligned_cols=158 Identities=17% Similarity=0.117 Sum_probs=101.1
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+++++||+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 489985 89999999999999999999999999 99999994 333321 2234577899999987 556
Q ss_pred c-CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927 316 L-DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394 (467)
Q Consensus 316 l-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~ 394 (467)
+ .+.... ...+........+.+.++. | | |||||++|||||+.+|++|||||||++ ++.
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 5 221000 0000000000011122221 1 1 999999999999999999999999999 888
Q ss_pred HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGEL 433 (467)
Q Consensus 395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i 433 (467)
.+.+.|++..+++|+| +||+++.+.. ....++|..
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~~ 172 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGLR 172 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcHH
Confidence 8999998874578999 9999986653 444566643
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.95 E-value=2.9e-27 Score=239.88 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=76.0
Q ss_pred CCCCCCChhHHHHHHHHHHhc------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEE
Q 044927 353 DEGENWSVGQRQLFCLGRVLL------KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMF 425 (467)
Q Consensus 353 ~~g~~LSgGq~Qrl~iARal~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i 425 (467)
....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+..||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 445689999999999999999 7999999999999999999999999998864 489999999999998789999
Q ss_pred EEEeCCEEEE
Q 044927 426 MVLSYGELVE 435 (467)
Q Consensus 426 ~vl~~G~iv~ 435 (467)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=4.4e-28 Score=221.40 Aligned_cols=147 Identities=14% Similarity=0.179 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHH
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 329 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~ 329 (467)
+++|+||||||||||+++|+|++. |.++|.+..+......++++||++|++ +..+|+. . ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~-~~------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-S-SK------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-E-ET-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-H-hh-------
Confidence 689999999999999999999985 556776543332124567899999987 3334441 0 00
Q ss_pred HHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH-----hcCCCCEEEeeC--CCCCCCHHHHHHHHHHHHH
Q 044927 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV-----LLKRNRILVLDE--ATASIDSATDAILQRIIRE 402 (467)
Q Consensus 330 ~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa-----l~~~p~iliLDE--pts~LD~~~~~~i~~~l~~ 402 (467)
+ .+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+++
T Consensus 63 -----~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 63 -----F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -----T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -----c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 0 00 0134556677899999999999996 999999999999 9999999999999998876
Q ss_pred HCCCceEEEEcc---ChhHHhh-cCEEEEEeCCEEEE
Q 044927 403 EFPGSTVITVAH---RVPTITD-SDMFMVLSYGELVE 435 (467)
Q Consensus 403 ~~~~~tvi~itH---~l~~~~~-~d~i~vl~~G~iv~ 435 (467)
.+.|+|+++| +.+.+.. ||| .+|+|++
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4677888885 7777765 787 5677765
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=6.7e-28 Score=218.74 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=105.5
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCc--cccccHHHhcC
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT--LFRGSVRTNLD 317 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~tv~enl~ 317 (467)
|+||++++||+++|+||||||||||++++.+ |...++ .+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 222222 22333 67777753 12222222221
Q ss_pred cCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH-----
Q 044927 318 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT----- 392 (467)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~----- 392 (467)
.. ....+..|+...+.. -...|||||||++||||+..+|++|+|||||++||+.+
T Consensus 64 -----------~~--------~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 64 -----------YI--------VSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp -----------HH--------HHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred -----------HH--------HHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 00 011112344444433 24469999999999999999999999999999999994
Q ss_pred -----------HHHHHHHHHHH-CCCceEEEEccChhHHhhcCEE
Q 044927 393 -----------DAILQRIIREE-FPGSTVITVAHRVPTITDSDMF 425 (467)
Q Consensus 393 -----------~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i 425 (467)
...+.+.+++. .+|.|+|++||+++.+..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 47777776654 2489999999999999887765
No 72
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=4.3e-28 Score=242.56 Aligned_cols=141 Identities=21% Similarity=0.184 Sum_probs=114.6
Q ss_pred EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 302 (467)
Q Consensus 223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 302 (467)
+++++| | .++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 556666 5 2389999999999999999999999999999999999999999999999652 22222334444432
Q ss_pred CCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEee
Q 044927 303 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382 (467)
Q Consensus 303 Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLD 382 (467)
| |||+||++|||||..+|++++||
T Consensus 224 -------------------------------------------------g-------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 -------------------------------------------------G-------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp -------------------------------------------------B-------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred -------------------------------------------------C-------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC-ceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927 383 EATASIDSATDAILQRIIREEFPG-STVITVAHRVPTITDSDMFMVLSYGEL 433 (467)
Q Consensus 383 Epts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~~~~~d~i~vl~~G~i 433 (467)
|||+. .+.+.++....| .|+|+++|+++....|||+++|++|+.
T Consensus 248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99982 245566665455 489999999997778999999998853
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=5.2e-29 Score=235.01 Aligned_cols=168 Identities=13% Similarity=0.051 Sum_probs=116.7
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcccEEEcCCCccccc-c-HH
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKLSIIPQEPTLFRG-S-VR 313 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~-t-v~ 313 (467)
.|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...++.++|++|++.+|.. + ..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 699999999999999999999999999999999999 6 99999 877654322 2346789999999877753 2 12
Q ss_pred HhcC---cCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH-----HHHhcCCCCEEEee
Q 044927 314 TNLD---PLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL-----GRVLLKRNRILVLD 382 (467)
Q Consensus 314 enl~---~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i-----ARal~~~p~iliLD 382 (467)
+++. +.. ..+.+++.++++.... ..++ .+|||||+||++| ||+++.+|++++||
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld 152 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLL 152 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH
Confidence 2221 111 1123445555543221 1111 5789999999999 89999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927 383 EATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 383 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
|||+++|.+++..+.+.+.+..+++| ++| +..||+|+++++
T Consensus 153 e~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 153 SRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999998887655555 566 356787777654
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=1.9e-28 Score=250.84 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=133.9
Q ss_pred ceecceeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 044927 236 LVLKGITCTFKEGT--------------------RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 295 (467)
Q Consensus 236 ~~L~~isl~i~~Ge--------------------~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r 295 (467)
.+|+++||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997653 1
Q ss_pred cccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh--HHHHHHHHHHhc
Q 044927 296 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG--QRQLFCLGRVLL 373 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG--q~Qrl~iARal~ 373 (467)
.++++|++.....|+.||+.+.. ....+.+.++..++.+. +..+ . |||| |+||++|||||.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHHHH
Confidence 27899997544669999885432 12345566666654321 2221 2 8999 999999999999
Q ss_pred C----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC----------CCceEEEEccChhH--Hhh-cCEEE-EEe
Q 044927 374 K----------RNRILVLDEATASIDSATDAILQRIIREEF----------PGSTVITVAHRVPT--ITD-SDMFM-VLS 429 (467)
Q Consensus 374 ~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~----------~~~tvi~itH~l~~--~~~-~d~i~-vl~ 429 (467)
+ +|++++|||||++||+.++..+.+.+++.. ...+++++||.++. ++. ||++. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999888888887651 13678899999886 665 88874 444
Q ss_pred CC
Q 044927 430 YG 431 (467)
Q Consensus 430 ~G 431 (467)
+|
T Consensus 253 eg 254 (413)
T 1tq4_A 253 IY 254 (413)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=1.8e-28 Score=253.78 Aligned_cols=194 Identities=14% Similarity=0.120 Sum_probs=153.3
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE---eCCCCC-----
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMG----- 290 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~---~i~~~~----- 290 (467)
..++++|+++.|+.+ ..+|+++ |++.+|++++|+||||||||||+++|+|+++|++|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 458899999999633 4599999 999999999999999999999999999999999999999998 454321
Q ss_pred HHHHhcccEEEcCC-Cccc-cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 291 LKDLRTKLSIIPQE-PTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 291 ~~~~r~~i~~v~Q~-~~lf-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
...+++.++|++|+ ..++ ..|+.+|+... .+... ..+ ......+ +...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~---~~~---------~~v~~~l-d~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFR---DRG---------QHVLLIM-DSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHH---TTT---------CEEEEEE-ECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHH---hCC---------CCHHHHH-HhHHHHHHHH-HHHHH
Confidence 34578889999995 3333 45888887531 11111 000 0001111 2346789999 99999
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-----Cc-----eEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-----GS-----TVITVAHRVPTITDSDMFMVLSYGELVEYDL 438 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~ 438 (467)
| +.+|++ |+|||+.+...+.+.+++..+ |+ |++++||+++ ...||++++|.+|+|+.+|+
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 889998 999999999999999988644 54 9999999999 66799999999999999999
Q ss_pred hhhHh
Q 044927 439 PSKLM 443 (467)
Q Consensus 439 ~~~l~ 443 (467)
+.++.
T Consensus 339 ~~~~~ 343 (438)
T 2dpy_A 339 LAEAG 343 (438)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 88874
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=7.7e-27 Score=218.14 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=111.4
Q ss_pred CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cH
Q 044927 234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV 312 (467)
Q Consensus 234 ~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv 312 (467)
..++++| .++++||+++|+||||||||||+++|+|+++. +.+++.....-.....++.++|+||++.+|.. |+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 3457888 79999999999999999999999999999963 44443221111112236789999999988764 67
Q ss_pred HHhcCcC----C-----CCCHHHHHHHH----------HHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 313 RTNLDPL----G-----MYSDNEIWEAM----------EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 313 ~enl~~~----~-----~~~~~~~~~~~----------~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
.+|+... . ..+.+++.+.+ +..++.+.....| ..|| ||+
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~ 139 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFL 139 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEE
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEE
Confidence 7776311 1 11233333332 2334444444444 3455 999
Q ss_pred CCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEe
Q 044927 374 KRNRILVLDEATASI----DSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLS 429 (467)
Q Consensus 374 ~~p~iliLDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~ 429 (467)
.+|++++|||||+++ |+..++.+.+.+++.. .+.|+|+|||+++.+.. ||||++|.
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999998 7788889999888763 47899999999998875 99999985
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.90 E-value=3.1e-26 Score=222.75 Aligned_cols=145 Identities=15% Similarity=0.110 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHHhcCcCCCCC----H
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYS----D 324 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~----~ 324 (467)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.++.... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 2346789999999988765 9999997643221 1
Q ss_pred HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC
Q 044927 325 NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF 404 (467)
Q Consensus 325 ~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 404 (467)
+.+.+.++ ..+.+.++ ..||||||||+++|||++. +++||||+++||+... .+++.+.+
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh--
Confidence 23333332 33444433 4689999999999999886 9999999999999763 33344433
Q ss_pred CCceEEEEccChhHH
Q 044927 405 PGSTVITVAHRVPTI 419 (467)
Q Consensus 405 ~~~tvi~itH~l~~~ 419 (467)
..++|+|.|+.+.+
T Consensus 140 -~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 -VVNIIPVIAKADTM 153 (270)
T ss_dssp -TSEEEEEETTGGGS
T ss_pred -cCcEEEEEeccccC
Confidence 38899999987755
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.90 E-value=2.7e-26 Score=226.55 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=124.7
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHH--hcccEEEcCCCc-ccc-
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LFR- 309 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~- 309 (467)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35678899999999999999999999999999999999999999999876542 1233 457999999987 665
Q ss_pred ccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCC
Q 044927 310 GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATA 386 (467)
Q Consensus 310 ~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts 386 (467)
.|+++|+.+.. ...+ ...++.+++ .........+|| |||++||||++.+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d---~~lldt~gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD---VVLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS---EEEECCCCC-----------SSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc---chHHhcCCC-----------CcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 48999985310 0000 001111221 111111123578 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHCCCceEEEEcc---------ChhHHhh-cCEEEEEeCCEE
Q 044927 387 SIDSATDAILQRIIREEFPGSTVITVAH---------RVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 387 ~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~l~~~~~-~d~i~vl~~G~i 433 (467)
++|+.++. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 22322 23789999999 4444443 689999999975
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.89 E-value=1.5e-23 Score=211.25 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=76.1
Q ss_pred CCChhHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEE
Q 044927 357 NWSVGQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v 427 (467)
.||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998864 79999999 444 8999999
Q ss_pred EeCCEEEEecChhhHh
Q 044927 428 LSYGELVEYDLPSKLM 443 (467)
Q Consensus 428 l~~G~iv~~g~~~~l~ 443 (467)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.88 E-value=3.6e-25 Score=222.79 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=125.4
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHH--hcccEEEcCCCc-ccc-c
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LFR-G 310 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 310 (467)
.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999876542 1223 467999999987 664 4
Q ss_pred cHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCC
Q 044927 311 SVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATAS 387 (467)
Q Consensus 311 tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~ 387 (467)
|+++|+.+.. ...+. ..++.+++ .........+|| |||++||||++.+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCC-----------SSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCC-----------ChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 8999985311 00000 01111221 111111123478 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHCCCceEEEEcc---------ChhHHhh-cCEEEEEeCCEE
Q 044927 388 IDSATDAILQRIIREEFPGSTVITVAH---------RVPTITD-SDMFMVLSYGEL 433 (467)
Q Consensus 388 LD~~~~~~i~~~l~~~~~~~tvi~itH---------~l~~~~~-~d~i~vl~~G~i 433 (467)
+|+.++. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 22222 23789999999 3444443 689999999974
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.88 E-value=2.8e-26 Score=227.46 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=129.3
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCT-----------------------FKEGTRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~-----------------------i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
.+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 477777765 899999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC--CCC----HHHHHHHHHHcChHHHHHhCCCccc
Q 044927 275 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--MYS----DNEIWEAMEKCQLKATISRLPMLLD 348 (467)
Q Consensus 275 ~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~--~~~----~~~~~~~~~~~~l~~~i~~l~~g~~ 348 (467)
..|. +++++|+|++++++.|+++|+.+.. ..+ .+.+.+ ++..+..|..
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~---------~L~~l~~~~~ 170 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMR---------FVTSVKSGSD 170 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHH---------HHHHHHTTCS
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHH---------HHHHhCCCcc
Confidence 7663 4699999999998889999986432 111 122333 3333333332
Q ss_pred -ccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh--hcCEE
Q 044927 349 -SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT--DSDMF 425 (467)
Q Consensus 349 -t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~--~~d~i 425 (467)
.. ...|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+|+|+|+.+... ..+|.
T Consensus 171 ~~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~ 239 (312)
T 3aez_A 171 YAC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRF 239 (312)
T ss_dssp CEE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHH
T ss_pred cCC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHH
Confidence 22 25799999999999999999999999999999998622 1122222 3 4578888877643 36777
Q ss_pred EEEeCCE
Q 044927 426 MVLSYGE 432 (467)
Q Consensus 426 ~vl~~G~ 432 (467)
+.+.+|+
T Consensus 240 ~~~rd~~ 246 (312)
T 3aez_A 240 LAMRTTA 246 (312)
T ss_dssp HHHTTTG
T ss_pred HHHHhcc
Confidence 7666654
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.88 E-value=1.5e-24 Score=218.05 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=143.0
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC-------CCH
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-------MGL 291 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~-------~~~ 291 (467)
..++.+++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ...
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358899999999633 3589999 9999999999999999999999999999999999999999865211 111
Q ss_pred HHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHH
Q 044927 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~-v~~~g~~LSgGq~Qrl~iAR 370 (467)
..+++.+.+++|... ...+++..+...+.+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~---------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR---------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTTS---------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 122333444444211 112333334443344443322 122211 113456899999 999999
Q ss_pred HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC---CCc-----eEEEEccChhHHhhcCEEEEEeCCEEEEecChhhH
Q 044927 371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF---PGS-----TVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 442 (467)
+.+|++ |+|+|+.....+.+.+++.. .|. |++++||+++ -..||+++++.+|+|+.+|+++++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688887 99999999999999998864 377 9999999999 455999999999999999988876
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.87 E-value=1.4e-24 Score=230.43 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=123.8
Q ss_pred EeEEEEeCCCCCceecceeE-EEeCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 224 EDLKVRYRPNTPLVLKGITC-TFKEGTRVGVVGRTGSGKTTLISA--LFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl-~i~~Ge~~~ivG~sGsGKSTll~~--l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
+++. +|+.+ .++|+++|+ .+++|++++|+||||||||||+++ +.|+++|++|.|+++|.+. ..+....++.+||
T Consensus 16 ~~~~-~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 16 QAIA-KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGW 92 (525)
T ss_dssp SSCC-EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTC
T ss_pred cccc-cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCC
Confidence 3443 34433 358999999 999999999999999999999999 6899999999999999872 2223345678999
Q ss_pred EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
++|++... +|+.......+++..++++..++.+...+.+ ..|||| +|++++
T Consensus 93 ~~q~~~~~-----~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~li 143 (525)
T 1tf7_A 93 DLAKLVDE-----GKLFILDASPDPEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVS 143 (525)
T ss_dssp CHHHHHHT-----TSEEEEECCCCSSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEE
T ss_pred ChHHhhcc-----CcEEEEecCcccchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEE
Confidence 99987531 1221100000000111222223333333333 335665 588999
Q ss_pred eeCCCCC-----CCHHHHHHHHHHHHHHC-CCceEEEEccChhHH---------hh-cCEEEEEeCC
Q 044927 381 LDEATAS-----IDSATDAILQRIIREEF-PGSTVITVAHRVPTI---------TD-SDMFMVLSYG 431 (467)
Q Consensus 381 LDEpts~-----LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~---------~~-~d~i~vl~~G 431 (467)
|||||+. +|+...+.+.+.++.+. .|+|+|++||+++.+ +. ||+|++|++|
T Consensus 144 lDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 144 IDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp EECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred ECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 9999984 68999999999888754 489999999999874 45 9999999983
No 84
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.86 E-value=3.7e-24 Score=197.15 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=120.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHH
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI 327 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~ 327 (467)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++ ..+++++||++|+. .++ ++|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 99999888544 34688899999986 332 344431110000
Q ss_pred HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH-HHHH---HhcCCCCEEEeeC--CCCCCCHHHHHHHHHHHH
Q 044927 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF-CLGR---VLLKRNRILVLDE--ATASIDSATDAILQRIIR 401 (467)
Q Consensus 328 ~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl-~iAR---al~~~p~iliLDE--pts~LD~~~~~~i~~~l~ 401 (467)
+...+..+++.+..+|+|||+++ ++++ |++.+|+++|||| |+..+|+...+.+.+.++
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 11123477888889999999998 5565 6899999999999 899999988777777776
Q ss_pred HHCCCceEE----EEccChhHHhhcCEEEEEeCCEEEEec
Q 044927 402 EEFPGSTVI----TVAHRVPTITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 402 ~~~~~~tvi----~itH~l~~~~~~d~i~vl~~G~iv~~g 437 (467)
. .+++| .++||.+ ...+|||..+++|+|++..
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 3 34455 3449875 4557888888999998754
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.86 E-value=1.9e-22 Score=227.38 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=121.7
Q ss_pred ccEEEEe-----EEEEeCCCCCceecceeEEEeC-------CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 044927 219 GRIELED-----LKVRYRPNTPLVLKGITCTFKE-------GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 286 (467)
Q Consensus 219 ~~i~~~~-----vs~~y~~~~~~~L~~isl~i~~-------Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i 286 (467)
+.|+++| |++.|+++ ..+++|++|++++ |++++|+|||||||||++|++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 3599999 99999433 4599999999987 999999999999999999999 99864
Q ss_pred CCCCHHHHhcccE-EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927 287 CSMGLKDLRTKLS-IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365 (467)
Q Consensus 287 ~~~~~~~~r~~i~-~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr 365 (467)
..++| ||||++. ..|+.|||.. . .++.+.+.. | ..++|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~--r------------ig~~d~~~~---~--------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFT--R------------LGASDRIMS---G--------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEE--E------------CC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHH--H------------cCCHHHHhh---c--------hhhhHHHHHH-
Confidence 23566 9999873 4577777731 1 111111111 1 1456777765
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHH-HHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEE--EecCh
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSAT-DAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELV--EYDLP 439 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv--~~g~~ 439 (467)
+++|++++.+|+++||||||+|+|+.. ...++..++.+. + ++|+|++||+++.+.. ||++.++ +|++. +.|++
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999999999999999987 455667776653 3 8999999999998876 8999887 48887 45544
No 86
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=8.5e-23 Score=197.53 Aligned_cols=131 Identities=20% Similarity=0.172 Sum_probs=99.3
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 3899999 9999999999999999999999999999998 999999997653221 1112222221
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~ 394 (467)
+.|++ ...| |++|||||..+|++++||||| |+++..
T Consensus 79 -----------------------------~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 -----------------------------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp -----------------------------EBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred -----------------------------HhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 11111 1122 899999999999999999999 998865
Q ss_pred HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEe
Q 044927 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS 429 (467)
Q Consensus 395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~ 429 (467)
.+.+ ....|.|+++++|+.+....|||+++|.
T Consensus 115 ~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 115 TALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 4443 3345899999999988766688876654
No 87
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=6.8e-21 Score=191.23 Aligned_cols=76 Identities=24% Similarity=0.232 Sum_probs=67.9
Q ss_pred CCCCCChhHHH------HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEE
Q 044927 354 EGENWSVGQRQ------LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFM 426 (467)
Q Consensus 354 ~g~~LSgGq~Q------rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~ 426 (467)
....||||||| |+++|||++.+|++|||||||++||+.....+.+.|++.. .++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 34679999999 6788899999999999999999999999999999998853 4789999999987767799999
Q ss_pred EEe
Q 044927 427 VLS 429 (467)
Q Consensus 427 vl~ 429 (467)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.85 E-value=1.5e-21 Score=206.89 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=70.9
Q ss_pred CCC-ChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCC
Q 044927 356 ENW-SVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYG 431 (467)
Q Consensus 356 ~~L-SgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G 431 (467)
..| ||||+||++||||++.+| ++|||||||+|||+.+...+.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999999999876689999999999998889999999654
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=7.3e-23 Score=227.16 Aligned_cols=169 Identities=21% Similarity=0.209 Sum_probs=119.7
Q ss_pred HHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHh
Q 044927 263 TLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISR 342 (467)
Q Consensus 263 Tll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~ 342 (467)
|+..+.-+.+.|..|+|+++|+++.++....+...++++.+-. .+..++. .-....+..+. ..+.+..
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~------~~~~~~~~~~~--~~~~L~~ 450 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTERERE------IVGELLKEIEK--RLEFLVD 450 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTT------THHHHHHHHHH--HHHHHHT
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHH------HHHhhHHHHHH--HHHHHHH
Confidence 3445556778999999999999885543333333333322110 0111110 00111111111 1123333
Q ss_pred CCCccccc-ccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH
Q 044927 343 LPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT 418 (467)
Q Consensus 343 l~~g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~ 418 (467)
+ |++.. .+....+||||||||++|||||+++|+ +|||||||++||+.....+.+.|+++. .|.|+|+|+|+++.
T Consensus 451 v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~ 528 (916)
T 3pih_A 451 V--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528 (916)
T ss_dssp T--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH
T ss_pred c--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 2 44332 455567899999999999999999887 999999999999999999999999875 48999999999999
Q ss_pred HhhcCEEEEE------eCCEEEEecChhhHhcc
Q 044927 419 ITDSDMFMVL------SYGELVEYDLPSKLMET 445 (467)
Q Consensus 419 ~~~~d~i~vl------~~G~iv~~g~~~~l~~~ 445 (467)
+..||+|++| ++|+|++.|+++++++.
T Consensus 529 ~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 529 IRNADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp HHTCSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred HHhCCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 9889999999 89999999999999864
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.84 E-value=8.2e-22 Score=193.93 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=119.4
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
++|+++++.+++|++++|+||||||||||++.|+|...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 379999999999999999999999999999999999999888 77665433 3455666666555554322 1222
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH-HHHHHHHHHhcCCCCEEEeeCCCC---C---
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ-RQLFCLGRVLLKRNRILVLDEATA---S--- 387 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq-~Qrl~iARal~~~p~iliLDEpts---~--- 387 (467)
++... ..++++..+..+ ..+...+.. +.+....+|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 33210 011122222211 122222211 223335689998 67777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHC--CCceEEEEccCh--h--------------------HHh-hcCEEEEEeCCEE
Q 044927 388 IDS-ATDAILQRIIREEF--PGSTVITVAHRV--P--------------------TIT-DSDMFMVLSYGEL 433 (467)
Q Consensus 388 LD~-~~~~~i~~~l~~~~--~~~tvi~itH~l--~--------------------~~~-~~d~i~vl~~G~i 433 (467)
+|. .....+.+.|+++. .++|||+++|.. + .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 55567778887753 389999999995 4 455 4999999999875
No 91
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.84 E-value=1.1e-23 Score=190.80 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCC---HHHHh-cccE----EEcCCCccccccHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMG---LKDLR-TKLS----IIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~tv~enl~ 317 (467)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999987776 56777 4788 899999887 221
Q ss_pred cCCCCCHHHHHHHHHHcChHHHHHh-CCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927 318 PLGMYSDNEIWEAMEKCQLKATISR-LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379 (467)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il 379 (467)
.. ++. .+++++++.+ +| |+||.++|+ |||||+|||+||||++++|++.
T Consensus 77 ----~~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VS-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CC-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CC-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11 221 6799999999 99 999999995 9999999999999999999873
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.82 E-value=2.9e-22 Score=191.24 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=110.2
Q ss_pred EEEEeEEEEeCCCCCceecceeE--EEeCCcEEEEEcCCCCcHHHHHHHHh--cCCCCCccEEEEcCEeCCCCCHHHHhc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITC--TFKEGTRVGVVGRTGSGKTTLISALF--RLVEPENGRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl--~i~~Ge~~~ivG~sGsGKSTll~~l~--gl~~p~~G~i~i~g~~i~~~~~~~~r~ 296 (467)
+++++++..++ .|+++ + .|++|++++|+||||||||||+++|+ |+.++.+|.+++++.+... .....++
T Consensus 7 ~~~~~i~tg~~-----~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 7 QPVRRVKSGIP-----GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp -CCCEECCSCT-----TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred cccceeecCCH-----hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 45566665553 24443 2 68999999999999999999999999 7756778888887753211 1223446
Q ss_pred ccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 297 KLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
.+++++|+...+.. ++.++..........+..... ...+-++.+....+..-..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLE------------------------DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HcCCChHHHhhcCCEEEEEccccccccccccceecc------------------------CcccHHHHHHHHHHHHHhhC
Confidence 78888887644322 333332110000000000000 11233444444444444579
Q ss_pred CCEEEeeCCCCCCC-----HHHHHHHHHHHHHHC-CCceEEEEccChhHH----------hhc-CEEEEEeC
Q 044927 376 NRILVLDEATASID-----SATDAILQRIIREEF-PGSTVITVAHRVPTI----------TDS-DMFMVLSY 430 (467)
Q Consensus 376 p~iliLDEpts~LD-----~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~----------~~~-d~i~vl~~ 430 (467)
|++++|||||+++| +..++.+.+.++.+. .|+|+|++||+++.+ ..| |+|++|++
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99999999999997 556666777777653 489999999999886 347 99999963
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.82 E-value=1.7e-22 Score=193.60 Aligned_cols=165 Identities=12% Similarity=0.126 Sum_probs=103.5
Q ss_pred CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHH
Q 044927 234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 313 (467)
Q Consensus 234 ~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 313 (467)
...+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 345899999999999999999999999999999999976 555444 357789999999743345888
Q ss_pred HhcCcC-C--CC------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927 314 TNLDPL-G--MY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384 (467)
Q Consensus 314 enl~~~-~--~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp 384 (467)
+|+.+. + .. ..+++.+.++. +.++.+.. ...||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCc
Confidence 876421 1 11 11222222221 22223332 25799999999988 688999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCceEEEEccChh-HHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 385 TASIDSATDAILQRIIREEFPGSTVITVAHRVP-TITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 385 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~-~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
....|.. +.+. .+.|++++||+.. ..+. ++++ ++|+ +++++.
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8887764 2222 3789999999744 3344 4444 6674 566665
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=9.1e-21 Score=208.76 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=131.4
Q ss_pred CCCCcHHHHHHHHhcC---------CCCCccEEEEcCEeCCC---CCHHHHhcccEEEcCCCccccccHHHhcCcCCCCC
Q 044927 256 RTGSGKTTLISALFRL---------VEPENGRILIDGLDICS---MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 323 (467)
Q Consensus 256 ~sGsGKSTll~~l~gl---------~~p~~G~i~i~g~~i~~---~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~ 323 (467)
.+..||+++.+.+... +.|.+|+|.++|+++.+ ++..++...+.-+||++..+. + +...+.. .
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--~ 344 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--E 344 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS--S
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch--h
Confidence 3556899998887663 35678999999999887 455555555555555554322 2 1222111 1
Q ss_pred HHHHH-----HHHHHcChHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHH
Q 044927 324 DNEIW-----EAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAI 395 (467)
Q Consensus 324 ~~~~~-----~~~~~~~l~~~i~~l~~g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~ 395 (467)
..++. ++.++. . .+..+ |++.. .+....+|||||||||+||++|..+| ++|||||||++||+...+.
T Consensus 345 ~~~i~~~i~~ei~~rl--~-~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 345 QAIALQRMAADLVKRL--D-VLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp HHHHHHHHHHHHHHHH--H-HHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred hHHHHHHHHHHHHHHH--H-HHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 11111 121221 1 23333 44432 45666899999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCEEEEecChhhHhcc
Q 044927 396 LQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGELVEYDLPSKLMET 445 (467)
Q Consensus 396 i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~ 445 (467)
+.+.++++. .|.|+|+|+||++.+..||+|++| ++|++++.|+++++.+.
T Consensus 420 L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 420 LLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 999998864 489999999999988889999999 79999999999999864
No 95
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.82 E-value=1.5e-23 Score=212.95 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=139.2
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcccEEEcC-----CCccccc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQ-----EPTLFRG 310 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~~ 310 (467)
+|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .++..+++|+| ++..|+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 567665 7999999999999999999999999999998 899988776553 2 35678999999 8888999
Q ss_pred cHHHhcCcCCCC-------CHHHHHHHHHHcCh-----------------HHHH------------HhCCCcccccccCC
Q 044927 311 SVRTNLDPLGMY-------SDNEIWEAMEKCQL-----------------KATI------------SRLPMLLDSSVSDE 354 (467)
Q Consensus 311 tv~enl~~~~~~-------~~~~~~~~~~~~~l-----------------~~~i------------~~l~~g~~t~v~~~ 354 (467)
++++|+...++. +.+.++.+++.+.. +..+ ..++.++++.++++
T Consensus 201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qr 280 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQR 280 (372)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEE
T ss_pred HHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEE
Confidence 999999754433 55666666665432 1111 12356788999998
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCE--EEeeCCCCCCCHH----H-----HHHHHHHHHHHCCCceEEEEccChhH
Q 044927 355 GENWSVGQRQLFCLGRVLLKRNRI--LVLDEATASIDSA----T-----DAILQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 355 g~~LSgGq~Qrl~iARal~~~p~i--liLDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
+..+|+| ||++++|+++.+|++ +|+||+|++||.. + +...++.++...+|+|.+.++||++.
T Consensus 281 l~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 281 LLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred eEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 8888999 899999999999999 9999999999965 2 33567777777889999999999873
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=2.2e-21 Score=205.84 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=113.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCC
Q 044927 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 321 (467)
Q Consensus 242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~ 321 (467)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. ..+.++....+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 4589999999999999999999999999998875 53 01345566652 13333332111
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHH-----HHHHH
Q 044927 322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA-----TDAIL 396 (467)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~-----~~~~i 396 (467)
.+.++ +.. .|+..........|||||+||+++||++..+|++||+| ||++||+. ..+.+
T Consensus 333 ~~~~~----~~~-----------~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i 396 (525)
T 1tf7_A 333 MDFEE----MER-----------QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV 396 (525)
T ss_dssp CCHHH----HHH-----------TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH
T ss_pred CCHHH----HHh-----------CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH
Confidence 11111 111 12222333445679999999999999999999999999 99999998 88888
Q ss_pred HHHHHHHC-CCceEEEEccCh----------hHHhh-cCEEEEEeCCE
Q 044927 397 QRIIREEF-PGSTVITVAHRV----------PTITD-SDMFMVLSYGE 432 (467)
Q Consensus 397 ~~~l~~~~-~~~tvi~itH~l----------~~~~~-~d~i~vl~~G~ 432 (467)
.+.++.+. .|.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 397 ~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 397 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 88887653 589999999998 66664 99999999886
No 97
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.81 E-value=3.7e-20 Score=206.38 Aligned_cols=165 Identities=12% Similarity=0.065 Sum_probs=117.1
Q ss_pred cEEEEeEEEEeCC---CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHH--------hcCCCCCccEEEEcCEeCCC
Q 044927 220 RIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--------FRLVEPENGRILIDGLDICS 288 (467)
Q Consensus 220 ~i~~~~vs~~y~~---~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l--------~gl~~p~~G~i~i~g~~i~~ 288 (467)
.+++++...-+-. +...+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4777765432211 224589999999999999999999999999999999 56555543321
Q ss_pred CCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 289 MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 289 ~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
++. .+.+. ...++.+.+ ...+|+|++++..+
T Consensus 702 ---------~~~------------~d~i~--------------~~ig~~d~l--------------~~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSI------------VDCIL--------------ARVGAGDSQ--------------LKGVSTFMAEMLET 732 (934)
T ss_dssp ---------EEC------------CSEEE--------------EECC-----------------------CHHHHHHHHH
T ss_pred ---------chH------------HHHHH--------------HhcCchhhH--------------HHhHhhhHHHHHHH
Confidence 000 01110 001111111 13468888888888
Q ss_pred HHHh--cCCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhH
Q 044927 369 GRVL--LKRNRILVLDEATASIDSATDAIL-QRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 369 ARal--~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 442 (467)
|+++ +.+|+++||||||+|+|+.....+ +..++.+. .++|+|++||+.+....||++..+++|++...++++++
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 8888 999999999999999999887766 44455442 48999999999888888999999999999988877765
No 98
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.81 E-value=1e-19 Score=188.34 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhhcCEEEEEeC
Q 044927 357 NWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 357 ~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.|++... +.++|++||+......||+++++..
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 7899999999888888999999863
No 99
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=3.7e-20 Score=204.36 Aligned_cols=95 Identities=24% Similarity=0.321 Sum_probs=87.0
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEE
Q 044927 351 VSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 351 v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v 427 (467)
.+....+|||||+|||+||++|..+| ++|||||||++||+...+.+.+.|+++. .|.|||+|+||++.+..||||++
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 577 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID 577 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 45556789999999999999999985 9999999999999999999999998864 58999999999999988999999
Q ss_pred E------eCCEEEEecChhhHhcc
Q 044927 428 L------SYGELVEYDLPSKLMET 445 (467)
Q Consensus 428 l------~~G~iv~~g~~~~l~~~ 445 (467)
| ++|++++.|+++++.+.
T Consensus 578 LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 578 IGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp ECSSSGGGCCSEEEEECTTTTTTC
T ss_pred eCCCccCCCCEEEEecCHHHHHhh
Confidence 9 79999999999999863
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.80 E-value=1.6e-20 Score=205.73 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=111.3
Q ss_pred ccEEEEeEEEEeCC---CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCHHHH
Q 044927 219 GRIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGLKDL 294 (467)
Q Consensus 219 ~~i~~~~vs~~y~~---~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p~~G~i~i~g~~i~~~~~~~~ 294 (467)
+.+++++. +++- +...+++|+||+ |++++|+||||||||||+|+++|+.. |+.|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------hh
Confidence 35888877 3432 234689999999 99999999999999999999999874 6777652 0 11
Q ss_pred hcccEEEcCCCcccc-ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh-
Q 044927 295 RTKLSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL- 372 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal- 372 (467)
+..+++++| +|. .++.||+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 446788876 443 255555421 2589999999999999
Q ss_pred -cCCCCEEEeeCC---CCCCCHHHH-HHHHHHHHHHCCCceEEEEccChhHHhhc
Q 044927 373 -LKRNRILVLDEA---TASIDSATD-AILQRIIREEFPGSTVITVAHRVPTITDS 422 (467)
Q Consensus 373 -~~~p~iliLDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 422 (467)
+.+|+++||||| |+++|+.+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 578888877 589999999998876554
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.79 E-value=3.1e-20 Score=174.89 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=100.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-------CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEP-------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
.+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .. ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 445888887542 11 2357778888777777899998
Q ss_pred CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh-------cCCCCEEEeeCCCCCCC
Q 044927 317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL-------LKRNRILVLDEATASID 389 (467)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal-------~~~p~iliLDEpts~LD 389 (467)
.+.......+. ++.+..++++ ..+|++++|||||+.+|
T Consensus 95 ~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNHQ-----------------------------------MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHHH-----------------------------------HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHHH-----------------------------------HHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 64332222211 1112222222 35899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHC--CCceEEEEccChh----HHhh-cCEEEEEeCC
Q 044927 390 SA-------TD-----AILQRIIREEF--PGSTVITVAHRVP----TITD-SDMFMVLSYG 431 (467)
Q Consensus 390 ~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~l~----~~~~-~d~i~vl~~G 431 (467)
+. .+ ..+.+.+.+.. .++|+|++||..+ .+.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 21 24555555532 3899999999544 4665 8999999975
No 102
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=2.2e-19 Score=158.54 Aligned_cols=81 Identities=23% Similarity=0.221 Sum_probs=71.4
Q ss_pred CCCCCCChhHHHHHHHH------HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEE
Q 044927 353 DEGENWSVGQRQLFCLG------RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMF 425 (467)
Q Consensus 353 ~~g~~LSgGq~Qrl~iA------Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i 425 (467)
....+||||||||++|| ||++.+|+++||||||++||+.+...+.+.+++.. .++|+|++||+++....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 45678999999999876 99999999999999999999999999999999864 478999999999666669999
Q ss_pred EEE--eCCEE
Q 044927 426 MVL--SYGEL 433 (467)
Q Consensus 426 ~vl--~~G~i 433 (467)
++| ++|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45643
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.79 E-value=6.8e-21 Score=191.84 Aligned_cols=166 Identities=19% Similarity=0.132 Sum_probs=115.0
Q ss_pred eecce-eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCc----cE-EEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927 237 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPEN----GR-ILIDGLDICSMGLKDLRTKLSIIPQEPTLF 308 (467)
Q Consensus 237 ~L~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~----G~-i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 308 (467)
.|+++ ++.+++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6766 68 999987641 245688899999888
Q ss_pred cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc-------CCCCEEEe
Q 044927 309 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-------KRNRILVL 381 (467)
Q Consensus 309 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~-------~~p~iliL 381 (467)
..++.+|+.+..... |.+|+|++.++++++ .+|+++|+
T Consensus 193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 789999986432222 234555555555555 78999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 382 DEATASIDSAT------------DAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 382 DEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
||||+++|+.. ...+...|.+.. .++|+|+++|....... ++...+...|++++.+.+..+.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 99999999862 234444455432 48999999998775542 3445667778887777665553
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.78 E-value=1e-21 Score=211.57 Aligned_cols=189 Identities=16% Similarity=0.203 Sum_probs=120.3
Q ss_pred cEEEEeEEEEeCCCCCceecce----------eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCC
Q 044927 220 RIELEDLKVRYRPNTPLVLKGI----------TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS 288 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~i----------sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~ 288 (467)
.++++|+++.|+...+++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999964333455444 366665 999999999999999999999988 79999999998632
Q ss_pred --C-CHHHHhcccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927 289 --M-GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364 (467)
Q Consensus 289 --~-~~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q 364 (467)
. ....+|+.++|++|++.+++. ||++|+... ... ..... ..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~------~~~~~-----------~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNA------IAGEG-----------MGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHH------HHCSS-----------SCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHH------hcCCc-----------cccc---hH
Confidence 1 134678899999999988764 899988420 000 00001 1111 23
Q ss_pred HHHHHHHhcCCCCEEEeeCC------CCCCCHHHHHHHHHHHHHHC---CCceEEEEccChhHH--------hh-----c
Q 044927 365 LFCLGRVLLKRNRILVLDEA------TASIDSATDAILQRIIREEF---PGSTVITVAHRVPTI--------TD-----S 422 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEp------ts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~--------~~-----~ 422 (467)
++.++.+...+|+++++||| |++||+..+..+.+.++++. .+.++++++|+++.. .. .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 34455555678999999999 99999999999999998852 256888999987632 22 3
Q ss_pred CEEEEEeCCEEEEecChhhH
Q 044927 423 DMFMVLSYGELVEYDLPSKL 442 (467)
Q Consensus 423 d~i~vl~~G~iv~~g~~~~l 442 (467)
..|+|+.++.+++.|+.+++
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCC
T ss_pred ceEEEecchhhcCcccHHHH
Confidence 56899999988888877654
No 105
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.78 E-value=7.6e-23 Score=189.83 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=118.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccH
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSV 312 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 312 (467)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78897 589888888888888876 79999999999
Q ss_pred HHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH-HhcCCCCEEEeeCCCCCCCHH
Q 044927 313 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR-VLLKRNRILVLDEATASIDSA 391 (467)
Q Consensus 313 ~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR-al~~~p~iliLDEpts~LD~~ 391 (467)
.+|+ ++ .++++++++++.....-+ +..|.|+++.... ++ .|| +++.+|++++|||||+++|.+
T Consensus 77 ~~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YG--TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CC--CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 9998 32 356778777765321100 1123444443221 12 567 899999999999999999999
Q ss_pred HHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927 392 TDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY 430 (467)
Q Consensus 392 ~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~ 430 (467)
+++.|.+.|.+..++ +.++| +. ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999988775433 35677 33 67999998875
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.77 E-value=7.3e-20 Score=184.33 Aligned_cols=147 Identities=20% Similarity=0.169 Sum_probs=106.5
Q ss_pred EeEEEEeCCCCCceecceeE-------EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHh
Q 044927 224 EDLKVRYRPNTPLVLKGITC-------TFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLR 295 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl-------~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r 295 (467)
.+++++|.+...+.|+++.+ ...+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 56778885555567888776 77899999999999999999999999999997 56665443332 221 23
Q ss_pred cccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927 296 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 296 ~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~ 375 (467)
...++++|.+.... . .+-.+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~-----~------~~~~~----------------------------------------~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----T------LGFSE----------------------------------------ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----B------SCHHH----------------------------------------HHHHHTTSC
T ss_pred ccccceeeeeeccc-----c------CCHHH----------------------------------------HHHHHhhhC
Confidence 34455665432110 0 00000 999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCC
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYG 431 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G 431 (467)
|+++++|||| |+++...+.+. ...|.|+++++|+.+.+..+||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 77775555444 23489999999999998889999888543
No 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=1.4e-20 Score=185.79 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=80.6
Q ss_pred EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927 224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLKDLRTKLSIIP 302 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl-~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 302 (467)
+||++.|++ +.++++++|+| +|+||||||||||++.|+|. ..|++| |.++|.++.. . .. ++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEEe
Confidence 478889963 35899999988 99999999999999999998 889999 8888877643 1 12 45689999
Q ss_pred CCCccc-cccHHHhcCcCCCCCH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 303 QEPTLF-RGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 303 Q~~~lf-~~tv~enl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
|++.++ .-|+.|+..+...... ++.....+. +.+..+.. ..++|||||||+.+|||++ +++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~-----------~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERY-----------LHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTHHHH--HHHHHHHH-----------HHHHTSSCCTTCCCCCCCE----EEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHH-----------HHHhCHHhhhhhhhhhhhh----eee
Confidence 987654 4588888754221111 111111111 11111111 1457999999999999986 999
Q ss_pred eeCCCCC-CCHHHHHHHHHHHHHHC--CCceEEEEccChh
Q 044927 381 LDEATAS-IDSATDAILQRIIREEF--PGSTVITVAHRVP 417 (467)
Q Consensus 381 LDEpts~-LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~ 417 (467)
+||||++ ||+... +.+++.. .+.++|+..|++.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999985 999864 3344433 2678899999974
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.77 E-value=1.7e-20 Score=174.14 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=100.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCccEEEEc-------CEeCC-
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILID-------GLDIC- 287 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~-----~p~~G~i~i~-------g~~i~- 287 (467)
++++|++|.|+. +++++ |++++|.+++|+|+||||||||++.|+|.. .|+.|.+.+. +..+.
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 789999999952 47888 889999999999999999999999999998 8888887642 22221
Q ss_pred --CCC--------HHHHhcccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCC
Q 044927 288 --SMG--------LKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 356 (467)
Q Consensus 288 --~~~--------~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~ 356 (467)
.+. .+.+++.+++++|+...+.+ ++..++.......++++.+.++. ..+|. -.++.+..
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~---~~v~nK~D 148 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAV---LVLLTKAD 148 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCE---EEEEECGG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCe---EEEEeccc
Confidence 111 12344445555554333322 33333321111111222222221 12221 12344455
Q ss_pred CCChhHHHH-HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927 357 NWSVGQRQL-FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE 403 (467)
Q Consensus 357 ~LSgGq~Qr-l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 403 (467)
.+|+||+|| +..+|+++.+|+++++|||||++|+.....+.+.|.+.
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 789999999 89999999999999999999999999999999988774
No 109
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.77 E-value=3.8e-21 Score=195.01 Aligned_cols=176 Identities=13% Similarity=0.113 Sum_probs=125.1
Q ss_pred eecceeEEEeC--CcEEEEEcCCCCcHHHHHHHHhcCCCCCc----cEEEEc----CEeCCCCCHHHHhcccEEEcCCCc
Q 044927 237 VLKGITCTFKE--GTRVGVVGRTGSGKTTLISALFRLVEPEN----GRILID----GLDICSMGLKDLRTKLSIIPQEPT 306 (467)
Q Consensus 237 ~L~~isl~i~~--Ge~~~ivG~sGsGKSTll~~l~gl~~p~~----G~i~i~----g~~i~~~~~~~~r~~i~~v~Q~~~ 306 (467)
+.+.|++++++ |++++|+||||||||||+++|+|+++|++ |+|+++ |.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 999874 5555 4455555 55999999998
Q ss_pred cccccHHHhcCcCCCC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc-CCCCEEEeeC-
Q 044927 307 LFRGSVRTNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-KRNRILVLDE- 383 (467)
Q Consensus 307 lf~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~-~~p~iliLDE- 383 (467)
+|..|+++|+.+.... .+.... .+|+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 8999999999754311 111111 12455567777777764 5888888888
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927 384 --AT------ASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME 444 (467)
Q Consensus 384 --pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~ 444 (467)
|+ +++|+..+..+.+.+++..+ +.++++++|.-...+.+|++.++++ +++.++++||.+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 54 57888888888888866433 6788888875333344666666654 556667777754
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=4.8e-19 Score=196.21 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=87.0
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEE
Q 044927 351 VSDEGENWSVGQRQLFCLGRVLLKR--NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 351 v~~~g~~LSgGq~Qrl~iARal~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v 427 (467)
.+....+|||||||||+||++|..+ |++|||||||++||+...+.+.+.|+++. .|.|||+|+||++.+..||||++
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 594 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVD 594 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEE
Confidence 4556678999999999999999998 58999999999999999999999998864 58999999999999988999999
Q ss_pred E------eCCEEEEecChhhHhcc
Q 044927 428 L------SYGELVEYDLPSKLMET 445 (467)
Q Consensus 428 l------~~G~iv~~g~~~~l~~~ 445 (467)
| ++|++++.|+++++.+.
T Consensus 595 Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 595 IGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp ECSSSGGGCCSCCEEECHHHHHHC
T ss_pred ecCccccCCCEEEEeeCHHHhhhh
Confidence 9 69999999999999864
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.76 E-value=8.9e-22 Score=183.69 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=105.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc---cHHHhcCcC-C
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG---SVRTNLDPL-G 320 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~---tv~enl~~~-~ 320 (467)
.++|+++||+||||||||||+++|+|++.| +++|++|++.++.. |+++|..+. .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 58999999988743 676765321 1
Q ss_pred ---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH----HHHHHHHHHhcCCCCEEEeeCCCCC------
Q 044927 321 ---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ----RQLFCLGRVLLKRNRILVLDEATAS------ 387 (467)
Q Consensus 321 ---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq----~Qrl~iARal~~~p~iliLDEpts~------ 387 (467)
....+.+.++++..++.+. +...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 1233455555554433222 122345678885 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHH--CCCceEEEEccCh
Q 044927 388 -IDSATDAILQRIIREE--FPGSTVITVAHRV 416 (467)
Q Consensus 388 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~l 416 (467)
||+..+..+.+.+++. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999988888888764 3588999999985
No 112
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.75 E-value=2.1e-20 Score=184.50 Aligned_cols=164 Identities=17% Similarity=0.115 Sum_probs=108.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHH--hcccEEEcCCCccccc-cHHHhcCc
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL--RTKLSIIPQEPTLFRG-SVRTNLDP 318 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~lf~~-tv~enl~~ 318 (467)
.+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+..... ..+ |..+++++|++.+++. ++++|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999866531 222 4579999999887654 78888742
Q ss_pred CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCCCCHHHHHHH
Q 044927 319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATASIDSATDAIL 396 (467)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~LD~~~~~~i 396 (467)
. . .+... ..+-..+...+ .....++..++||++||||+..+|+ ++.|| |+++.+ +
T Consensus 180 ~------~----~~~~d--~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 180 M------K----ARGYD--LLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp H------H----HHTCS--EEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred H------H----hCCCC--EEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 1 0 00000 00000010000 0112246677999999999999999 55566 555543 3
Q ss_pred HHHHHHHC--CCceEEEEccChhHHhh----------cCEEEEEeCCE
Q 044927 397 QRIIREEF--PGSTVITVAHRVPTITD----------SDMFMVLSYGE 432 (467)
Q Consensus 397 ~~~l~~~~--~~~tvi~itH~l~~~~~----------~d~i~vl~~G~ 432 (467)
.+.+++.. .+.|+|++||.....+. --.|..+-.|+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 33333321 27899999997544321 13566676665
No 113
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.74 E-value=4.3e-19 Score=197.32 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=103.1
Q ss_pred cEEEEeEEEEe-----CCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH
Q 044927 220 RIELEDLKVRY-----RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 294 (467)
Q Consensus 220 ~i~~~~vs~~y-----~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~ 294 (467)
.+.+++...-. +.+...+++|+||++++|++++|+|||||||||++|++.++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 57776643211 11235689999999999999999999999999999999753211
Q ss_pred hcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927 295 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374 (467)
Q Consensus 295 r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~ 374 (467)
.+.-.++|++..-+ .+.+++. ...++.+.+. .+...+|+|++|+..++++ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh-cc
Confidence 01112333322110 0111110 0011111111 1125689999999999999 89
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHH-HHHHHH--CCCceEEEEccChhHHhhcCE
Q 044927 375 RNRILVLDEATASIDSATDAILQ-RIIREE--FPGSTVITVAHRVPTITDSDM 424 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~-~~l~~~--~~~~tvi~itH~l~~~~~~d~ 424 (467)
+|+++||||||+|+|+.....+. ..++.+ ..|+|+|++||+++....||+
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 99999999999999998877776 555544 358999999999988765554
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=1.2e-19 Score=186.24 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=99.2
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i 298 (467)
+.|.++||+++|++ ..+++++||+| +|+||||||||||+++|+|...|..| .+|.++... ....+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 35899999999964 35899999998 99999999999999999999886655 233332211 11124568
Q ss_pred EEEcCCCccc-cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927 299 SIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377 (467)
Q Consensus 299 ~~v~Q~~~lf-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ 377 (467)
++++|++.++ ..|+.||+.+.......+.+.. +.+++.. .++.+++||++||||++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999988776 4599999864322221111111 1122221 245567789999999999999
Q ss_pred ---EEEeeCCC-CCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927 378 ---ILVLDEAT-ASIDSATDAILQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 378 ---iliLDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
+|++|||| .+||+... .+ ++.+..+.++|+|.|..+.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-~~---lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-EF---MKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-HH---HHHHTTTSEEEEEEESTTS
T ss_pred eeEEEEEecCcccCCCHHHH-HH---HHHHhccCcEEEEEEcccC
Confidence 99999999 69998764 23 3334457888888887664
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.74 E-value=4.5e-19 Score=166.82 Aligned_cols=164 Identities=11% Similarity=0.032 Sum_probs=113.3
Q ss_pred ceecceeE-EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc---ccEEEcCCCcccccc
Q 044927 236 LVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGS 311 (467)
Q Consensus 236 ~~L~~isl-~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~t 311 (467)
+.|+++.. .+++|++++|+||||||||||++.+++...+.+|.+.+.+.+. +...++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 46888887 8999999999999999999999999998888888888876543 2333322 34444443211
Q ss_pred HHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCCC-
Q 044927 312 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATASI- 388 (467)
Q Consensus 312 v~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~L- 388 (467)
+++........ . .+ +. .+. ...|.++.++...+.+...+|+ ++++||||+.+
T Consensus 83 --~~~~~~~~~~~-~-------~~--------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMK-E-------KE--------DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEecccc-c-------cC--------ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 11111001100 0 00 00 000 1348999988888888778999 99999999888
Q ss_pred -CHHHHHHHHHHHHHHC--CCceEEEEccCh--------hHHhh-cCEEEEEeCC
Q 044927 389 -DSATDAILQRIIREEF--PGSTVITVAHRV--------PTITD-SDMFMVLSYG 431 (467)
Q Consensus 389 -D~~~~~~i~~~l~~~~--~~~tvi~itH~l--------~~~~~-~d~i~vl~~G 431 (467)
|+.....+.+.|++.. .++|+|+++|.. ..+.. ||+|++|++.
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988888888887752 489999999998 34554 9999999865
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.72 E-value=1.1e-18 Score=164.41 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=103.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cH----HH
Q 044927 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV----RT 314 (467)
Q Consensus 242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv----~e 314 (467)
.-..++|++++|+||||||||||+++|+|+++| .+|.|.+.+.+... ..++.++|+||++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346799999999999999999999999999986 68999998876532 235679999999988865 55 46
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~ 394 (467)
|+.+.+.. + |-.+++ ++.++..++++||| ||+.+..
T Consensus 86 ~~~~~~~~------------------------y------------g~~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 86 HAEVFGNY------------------------Y------------GTSREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEEETTEE------------------------E------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHHhcc------------------------C------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 65432210 0 000111 23333447999999 9999999
Q ss_pred HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
.+.+.+. +++||++++|+++.++. |+ +.+| .++++++.
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 9988775 57999999999998876 43 6677 57777775
No 117
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.71 E-value=1.8e-19 Score=182.35 Aligned_cols=153 Identities=18% Similarity=0.139 Sum_probs=114.8
Q ss_pred EEEeEEEE---eCCCCCcee---------cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC
Q 044927 222 ELEDLKVR---YRPNTPLVL---------KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 289 (467)
Q Consensus 222 ~~~~vs~~---y~~~~~~~L---------~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~ 289 (467)
+|+||+|+ |++..+++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 78999998 853223355 9999999999999999999999999999999999999999999985 344
Q ss_pred CHHHHhcccEEEc-CCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927 290 GLKDLRTKLSIIP-QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368 (467)
Q Consensus 290 ~~~~~r~~i~~v~-Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i 368 (467)
.....++.+++++ |++.+ | ++++..++-.|
T Consensus 215 ~~~~~~~~v~~v~~q~~~~--------------------------------------~-----------~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKE--------------------------------------E-----------ENAPVTAATLL 245 (361)
T ss_dssp CCTTCSSEEEEECC-----------------------------------------------------------CCHHHHH
T ss_pred CccccCCEEEEeecCcccc--------------------------------------c-----------cccccCHHHHH
Confidence 4444677889998 65531 0 12333477888
Q ss_pred HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhhcCEEEEEeCCE
Q 044927 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITDSDMFMVLSYGE 432 (467)
Q Consensus 369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~d~i~vl~~G~ 432 (467)
++++..+|+.+++|||..+ ...+.++.... ..|++..+|..+....+||+..+..|.
T Consensus 246 ~~~l~~~pd~~l~~e~r~~-------~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 246 RSCLRMKPTRILLAELRGG-------EAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp HHHTTSCCSEEEESCCCST-------HHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCCEEEEcCchHH-------HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 8888899999999999862 34445555433 357899999987666789988887763
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=3.1e-17 Score=148.46 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE--
Q 044927 355 GENWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL-- 428 (467)
Q Consensus 355 g~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl-- 428 (467)
...||||||||++|||+++ ++|+++||||||++||+.++..+.+.|++..++.++|+|||+......||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5579999999999999999999999999987788999999999988889999855
Q ss_pred eCCEE
Q 044927 429 SYGEL 433 (467)
Q Consensus 429 ~~G~i 433 (467)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 46643
No 119
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.69 E-value=4.2e-18 Score=187.65 Aligned_cols=152 Identities=10% Similarity=0.060 Sum_probs=100.4
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cH
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV 312 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv 312 (467)
..+++|+||+ ++|++++|+|||||||||++|+++|+..+ ..| ..+.. -+..+++++| +|.. ++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hcccceeHHH---HHhhCCH
Confidence 4589999999 99999999999999999999999997432 222 11110 0233555544 3321 33
Q ss_pred HHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927 313 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392 (467)
Q Consensus 313 ~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~ 392 (467)
.||+.. ++ ..+|+|+++ ++.+...+.+|+++|||||++|+|+..
T Consensus 660 ~d~l~~---------------------------~~--------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 660 ADDLAS---------------------------GR--------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred HHHHHh---------------------------hh--------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 343311 00 235667665 444445689999999999999999865
Q ss_pred HHHH-HHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927 393 DAIL-QRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYD 437 (467)
Q Consensus 393 ~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g 437 (467)
...+ ...++.+. .++|+|++||+.+....||++..+++|++....
T Consensus 704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 704 GLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 5443 55555542 489999999999887778887777777765443
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=3.3e-18 Score=174.95 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=114.1
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~ 297 (467)
.+++++ +++|++ .+ |+++||++++|++ +||+||||||||||+++|+|+. ++|.++....+...++.
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 466666 788853 34 9999999999999 9999999999999999999984 45555544334444668
Q ss_pred cEEEcCCCcccc-ccHHHhcCcCCCCCHHHHHH----HHHHcChHHHHHhC-------CCccccc-------ccCCCCCC
Q 044927 298 LSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWE----AMEKCQLKATISRL-------PMLLDSS-------VSDEGENW 358 (467)
Q Consensus 298 i~~v~Q~~~lf~-~tv~enl~~~~~~~~~~~~~----~~~~~~l~~~i~~l-------~~g~~t~-------v~~~g~~L 358 (467)
++|++|++.++. .|+.||+.+....+....+. .++. ....++... +..-|+. +-+.+..|
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 999999998874 59999997654333221111 1111 122222221 1112222 12344566
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH-HC-CCceEEEEccC
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EF-PGSTVITVAHR 415 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~ 415 (467)
+... +.++++|..+++++++|||+..|.+.....+.+.+++ +. .|.+++.++.+
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 7665 7999999999999999999999999877778888876 43 47888888864
No 121
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.65 E-value=5.3e-17 Score=158.23 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=96.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC-cCCCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-PLGMY 322 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~-~~~~~ 322 (467)
.+++|++++|+||||||||||++.+++... .|++ +.|.+... +..+.|+..+... ..+..++. .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998664 4666 33543211 2356777655432 11222221 11122
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC--CCCHHHH---HHHH
Q 044927 323 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA--SIDSATD---AILQ 397 (467)
Q Consensus 323 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts--~LD~~~~---~~i~ 397 (467)
......+.++... +....+.....||+||+|++ |+++.+|+++|+||||+ ++|+... ..+.
T Consensus 95 ~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 2333333333322 22223445678999998865 68889999999999999 9997543 6677
Q ss_pred HHHHHHC--CCceEEEEccChhHH
Q 044927 398 RIIREEF--PGSTVITVAHRVPTI 419 (467)
Q Consensus 398 ~~l~~~~--~~~tvi~itH~l~~~ 419 (467)
+.|+++. .++|+|+++|.....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777653 389999999987654
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.64 E-value=3e-18 Score=156.93 Aligned_cols=139 Identities=15% Similarity=0.075 Sum_probs=89.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 323 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~ 323 (467)
.+++|++++|+|||||||||+++.|+|. |+.|.|.++|.++.... ..++.++|++|++. ...++.+|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHH----
Confidence 4789999999999999999999999998 78899999987653221 11344678888664 345777877421
Q ss_pred HHHHHHHHHHcChHHHHHhCC--Cccccc--ccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH
Q 044927 324 DNEIWEAMEKCQLKATISRLP--MLLDSS--VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399 (467)
Q Consensus 324 ~~~~~~~~~~~~l~~~i~~l~--~g~~t~--v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~ 399 (467)
.. .... .+....++... .+++.. .+.....+|+|++||+++||++.++|+++ +|+...+.+.+.
T Consensus 76 -~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AG--RYAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HH--HHHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HH--HHhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00 0010 00000000000 011100 02233579999999999999999999876 588777777666
Q ss_pred HHHH
Q 044927 400 IREE 403 (467)
Q Consensus 400 l~~~ 403 (467)
++..
T Consensus 144 ~~~l 147 (191)
T 1zp6_A 144 FADL 147 (191)
T ss_dssp TTCC
T ss_pred Hhcc
Confidence 6543
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.63 E-value=9.2e-18 Score=166.89 Aligned_cols=153 Identities=20% Similarity=0.187 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC--------CCCccEEEEcCEeCCCCC---------------HHHHhcccEEE---c
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV--------EPENGRILIDGLDICSMG---------------LKDLRTKLSII---P 302 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~--------~p~~G~i~i~g~~i~~~~---------------~~~~r~~i~~v---~ 302 (467)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999998 789999999999987653 34567788888 7
Q ss_pred CCCcc-ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCC-CcccccccC-----CCCCCChhHHHHHHHHHHhcCC
Q 044927 303 QEPTL-FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP-MLLDSSVSD-----EGENWSVGQRQLFCLGRVLLKR 375 (467)
Q Consensus 303 Q~~~l-f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~-~g~~t~v~~-----~g~~LSgGq~Qrl~iARal~~~ 375 (467)
|++.+ |..++.||..+. ....+.+.+.. -.+.-...+ .+.-+.++- .-.++|+||+||+..+++++.+
T Consensus 85 q~~~~~~~~~v~E~~~l~---~p~~~~~~~~~--~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA---DPGPIIQTFFS--HEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHTSCCCSEEEEEEETTC---CHHHHHHHHHH--SHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred hcCCCCCCEEEEeCCCCC---CHHHHHHHHhc--CccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 87764 567999998642 12222111100 000000000 001111110 0025899999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChh
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVP 417 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 417 (467)
|+++ ||| ..+.+.+++..++.|++++||+..
T Consensus 160 ~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 160 TDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred cccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 9987 998 677777877777899999999643
No 124
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.62 E-value=1.3e-18 Score=170.58 Aligned_cols=129 Identities=10% Similarity=0.038 Sum_probs=90.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC----C
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG----M 321 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~ 321 (467)
+++.+++|+|++|||||||++.|.+++++. | . . ++.+.+|+||+++|+.++++|+.+.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999863 2 0 1 44566669999999999999874210 0
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCccccc------ccCCCCCCChhHHHHHHHH--HHhcCCCCEEEeeCCCCCCCHHH
Q 044927 322 YSDNEIWEAMEKCQLKATISRLPMLLDSS------VSDEGENWSVGQRQLFCLG--RVLLKRNRILVLDEATASIDSAT 392 (467)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~------v~~~g~~LSgGq~Qrl~iA--Ral~~~p~iliLDEpts~LD~~~ 392 (467)
.......++.+...+.+++..++.|++|. +...+..+||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000001111223566788888887653 4556789999999999998 555 999999999999999853
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.62 E-value=6.8e-16 Score=144.02 Aligned_cols=150 Identities=18% Similarity=0.091 Sum_probs=95.7
Q ss_pred eecceeE-EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 237 VLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 237 ~L~~isl-~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+...+++ .
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~------------------~ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ------------------M 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH------------------H
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH------------------H
Confidence 5666665 689999999999999999999999999 4334444444321 112222111 1
Q ss_pred cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh--HHHHHHHHHHhcCC-CCEEEeeCCCCCCCHHH
Q 044927 316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG--QRQLFCLGRVLLKR-NRILVLDEATASIDSAT 392 (467)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG--q~Qrl~iARal~~~-p~iliLDEpts~LD~~~ 392 (467)
.... ....++ ..+.+. + ..+|++ ++|+++.+|+++.+ |+++|+||||+.+|+..
T Consensus 66 ~~~~-~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 66 AETR-GLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp HHTT-TCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred HHhc-CCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 1000 011111 111111 1 123444 36789999999986 99999999999999743
Q ss_pred H--------HHHHHHHHHHC--CCceEEEEccChh-------------HHh-hcCEEEEEeCC
Q 044927 393 D--------AILQRIIREEF--PGSTVITVAHRVP-------------TIT-DSDMFMVLSYG 431 (467)
Q Consensus 393 ~--------~~i~~~l~~~~--~~~tvi~itH~l~-------------~~~-~~d~i~vl~~G 431 (467)
+ ..+.+.|++.. .++|+|+++|... .++ .||++++|++.
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2 33444455543 2789999999765 344 49999999864
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.61 E-value=6.7e-16 Score=146.32 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=89.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCC-----CccEEEEcCEeCCC-CCHHHHhcccEEEcCCCccccccHHHh
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFR--LVEP-----ENGRILIDGLDICS-MGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p-----~~G~i~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
.+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+... .....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 67889998865211 1122344456665543 4556
Q ss_pred cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCCCHH--
Q 044927 316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASIDSA-- 391 (467)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~LD~~-- 391 (467)
+.+....+.++..+.+ .-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQLL-----------------------------------YQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHHH-----------------------------------HHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 5432222222222111 1111111 689999999999999985
Q ss_pred -----HH-----HHHHHHHHHHC--CCceEEEEccChhHH-------------------h-hcCEEEEEeCC
Q 044927 392 -----TD-----AILQRIIREEF--PGSTVITVAHRVPTI-------------------T-DSDMFMVLSYG 431 (467)
Q Consensus 392 -----~~-----~~i~~~l~~~~--~~~tvi~itH~l~~~-------------------~-~~d~i~vl~~G 431 (467)
.+ ..+...+.+.. .++|+|+++|..... . .||++++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23344444432 389999999965432 2 48999999875
No 127
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.60 E-value=2e-18 Score=158.17 Aligned_cols=166 Identities=14% Similarity=0.034 Sum_probs=105.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc-cccHHHhcCcCCCCCHHH
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNE 326 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~enl~~~~~~~~~~ 326 (467)
|++++|+|||||||||+++.|++ |.+|.+.++|.++... ...++++|....+ ..++++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999997 6789999998654321 2467777765333 33666666310
Q ss_pred HHHHHHHcChHHHHHhCCCcccccccC----CCCCC--ChhHHHHHHHHH------HhcCCCCEEEeeCCCCCCCHHHHH
Q 044927 327 IWEAMEKCQLKATISRLPMLLDSSVSD----EGENW--SVGQRQLFCLGR------VLLKRNRILVLDEATASIDSATDA 394 (467)
Q Consensus 327 ~~~~~~~~~l~~~i~~l~~g~~t~v~~----~g~~L--SgGq~Qrl~iAR------al~~~p~iliLDEpts~LD~~~~~ 394 (467)
...... .+ .+.-++...+. .-..+ |+|++|++.++. +++.+|+...+|+ ++|+....
T Consensus 66 ~~~~~~-~~-------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 66 TVNFLL-AQ-------NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp HHHHHH-TT-------CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred HHHHHh-cC-------CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 000100 00 00001110000 00124 888888888888 8888888888884 89998777
Q ss_pred HHHHHHHHHC-CCceEEEEccC-hhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927 395 ILQRIIREEF-PGSTVITVAHR-VPTITD-SDMFMVLSYGELVEYDLPSKLM 443 (467)
Q Consensus 395 ~i~~~l~~~~-~~~tvi~itH~-l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 443 (467)
. ++.+.... .+.++|.+||. ++.++. ||+|+ ++|+++..|+++-+-
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 7 77777754 36899999999 998876 99998 999999999987653
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.59 E-value=2.2e-18 Score=160.67 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=94.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC--C-
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--M- 321 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~--~- 321 (467)
.++|++++|+||||||||||+++|+|+++|. | ..+++|+++.+.+..+..+|+.... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 4 2467777877777666666653110 1
Q ss_pred ---CCHHHHHHHHHHcChHHHHHhCCCc--ccccccCCCCCCChhHHHHHHHH-HHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927 322 ---YSDNEIWEAMEKCQLKATISRLPML--LDSSVSDEGENWSVGQRQLFCLG-RVLLKRNRILVLDEATASIDSATDAI 395 (467)
Q Consensus 322 ---~~~~~~~~~~~~~~l~~~i~~l~~g--~~t~v~~~g~~LSgGq~Qrl~iA-Ral~~~p~iliLDEpts~LD~~~~~~ 395 (467)
...+. +.+++..++.| +++.+.+.+..+|+||+||+++| |+++.++.++++|||..
T Consensus 80 ~~~~~~~~---------~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------- 141 (208)
T 3c8u_A 80 PETFDFEG---------FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------- 141 (208)
T ss_dssp GGGBCHHH---------HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG---------
T ss_pred CchhhHHH---------HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh---------
Confidence 11122 22233333333 67778889999999999999998 89899998888999842
Q ss_pred HHHHHHHHCCCceEEEEccChhH
Q 044927 396 LQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 396 i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
..+.+.. ..+|++.+..+.
T Consensus 142 --~~l~~~~--d~~i~vd~~~~~ 160 (208)
T 3c8u_A 142 --RDLTAIW--DVSIRLEVPMAD 160 (208)
T ss_dssp --GGGGGTC--SEEEEECCCHHH
T ss_pred --HHHHHhc--CEEEEEeCCHHH
Confidence 0112221 367778777765
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.57 E-value=3.1e-18 Score=171.56 Aligned_cols=177 Identities=18% Similarity=0.214 Sum_probs=115.8
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhc
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRT 296 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~ 296 (467)
++++|+++.|+. ..+|+++|+++++|++++|+||||||||||++.|+|++.|++|+|.+.|.++..... ...|.
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 445566667742 348999999999999999999999999999999999999999999999988754321 23467
Q ss_pred ccEEEcCCCccccc----------c---HHHhc--------C--c---CC-CCCHHHHHHHHHH-------------cCh
Q 044927 297 KLSIIPQEPTLFRG----------S---VRTNL--------D--P---LG-MYSDNEIWEAMEK-------------CQL 336 (467)
Q Consensus 297 ~i~~v~Q~~~lf~~----------t---v~enl--------~--~---~~-~~~~~~~~~~~~~-------------~~l 336 (467)
++++++|++.+|.. | ++|.+ . + .+ ..++..+.+.++. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999988741 1 11111 0 0 00 0011111100000 000
Q ss_pred HHHHHhCCCcc-cccccC-CCCCCChhHHHHHHHHHHhcC------CCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927 337 KATISRLPMLL-DSSVSD-EGENWSVGQRQLFCLGRVLLK------RNRILVLDEATASIDSATDAILQRIIREE 403 (467)
Q Consensus 337 ~~~i~~l~~g~-~t~v~~-~g~~LSgGq~Qrl~iARal~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~ 403 (467)
...+...|.-+ -+.++. ....+|+|++|++..|++++. +|+++. ||++|......+.+.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 00011112110 011111 124579999999999999997 688876 9999999988888888764
No 130
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.53 E-value=1.6e-16 Score=151.82 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhcCc----
Q 044927 247 EGTRVGVVGRTGSGKTTLISALF---RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDP---- 318 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~---gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~---- 318 (467)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...++.++|++.+++ .++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 123445666778776654 477777632
Q ss_pred -------C-C-CCCHHHHHHHHH--HcChHHHHHhCCC-cccccccCCCCCCChhHHHHHHHHHHh-cCCCCEEEee---
Q 044927 319 -------L-G-MYSDNEIWEAME--KCQLKATISRLPM-LLDSSVSDEGENWSVGQRQLFCLGRVL-LKRNRILVLD--- 382 (467)
Q Consensus 319 -------~-~-~~~~~~~~~~~~--~~~l~~~i~~l~~-g~~t~v~~~g~~LSgGq~Qrl~iARal-~~~p~iliLD--- 382 (467)
. + ....++.....+ ..++.-+++.-|. .++.........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0 1 011222111111 1110000000000 011111223356898 56 888 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHC
Q 044927 383 -EATASIDSATDAILQRIIREEF 404 (467)
Q Consensus 383 -Epts~LD~~~~~~i~~~l~~~~ 404 (467)
|||+++|+.++..+.+.+++..
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999988888887753
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.51 E-value=4.5e-16 Score=138.86 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=70.6
Q ss_pred EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcC
Q 044927 224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 303 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 303 (467)
+|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++... ...+ .+++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 455667742 35899999999999999999999999999999999999 9999999999877421 1112 27999
Q ss_pred CCccccccHHHhcC
Q 044927 304 EPTLFRGSVRTNLD 317 (467)
Q Consensus 304 ~~~lf~~tv~enl~ 317 (467)
++.+|..|+.||+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888768888884
No 132
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.2e-14 Score=145.83 Aligned_cols=139 Identities=20% Similarity=0.256 Sum_probs=79.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHH
Q 044927 250 RVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW 328 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~ 328 (467)
.+.|.||+|+||||+++.++| ++.|+.|.+.++|.+..... ..+..+++++|.+++.-.. -. .+......+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~ 110 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITP----SD-MGNNDRIVIQ 110 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecH----hh-cCCcchHHHH
Confidence 389999999999999999999 89999999999998765322 2366799999987652110 00 0111111233
Q ss_pred HHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCce
Q 044927 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGST 408 (467)
Q Consensus 329 ~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 408 (467)
+.++.+ .... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.+..++++
T Consensus 111 ~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 111 ELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp HHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred HHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 332221 1111 111111 4566 778999999999999 999999999999998777899
Q ss_pred EEEEccChhHH
Q 044927 409 VITVAHRVPTI 419 (467)
Q Consensus 409 vi~itH~l~~~ 419 (467)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999997643
No 133
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.50 E-value=1.1e-14 Score=150.87 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=101.2
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHH--HhcccEEEcCCCcccc-c
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKD--LRTKLSIIPQEPTLFR-G 310 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf~-~ 310 (467)
-+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|..... ... .|+.++|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36899999999999999999999999999999999999999999987765431 122 3678999999987654 5
Q ss_pred cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccC--CCCCCChhHHHHHHHHHHhcC-CC-CEEEeeCCCC
Q 044927 311 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD--EGENWSVGQRQLFCLGRVLLK-RN-RILVLDEATA 386 (467)
Q Consensus 311 tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~--~g~~LSgGq~Qrl~iARal~~-~p-~iliLDEpts 386 (467)
|+++|+.+.. ..+.+-.+ +||. |. +-.++-.-.+|++.++|++.. .| .+|+..+||+
T Consensus 363 tV~e~l~~a~------------~~~~DvVL------IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 363 VIFDAIQAAK------------ARNIDVLI------ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHH------------HTTCSEEE------ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHH------------hcCCCEEE------EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 8888885310 00000000 1110 00 001111223578899998754 46 3555555888
Q ss_pred CCCHHHHHHHHHHHHHHCCCceEEEEcc
Q 044927 387 SIDSATDAILQRIIREEFPGSTVITVAH 414 (467)
Q Consensus 387 ~LD~~~~~~i~~~l~~~~~~~tvi~itH 414 (467)
+.|.... .+.+.+. -+.|.+++||
T Consensus 424 Gq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 424 GQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp THHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred cHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 8665422 2223222 3689999999
No 134
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=6.1e-14 Score=142.24 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=67.3
Q ss_pred CCCChhHHHHH------HHHHHhcCC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927 356 ENWSVGQRQLF------CLGRVLLKR-NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL 428 (467)
Q Consensus 356 ~~LSgGq~Qrl------~iARal~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl 428 (467)
..|||||+||+ ++||++..+ |++|||||||++||+.+...+.+.|.+..++.++|++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999988 668999999 99999999999999999999999998875567999999999865669999999
Q ss_pred e
Q 044927 429 S 429 (467)
Q Consensus 429 ~ 429 (467)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 135
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.48 E-value=3.5e-17 Score=167.99 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=88.9
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHHHhcccEEEc---------C
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTKLSIIP---------Q 303 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~~~r~~i~~v~---------Q 303 (467)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999998876321 1223445566655 8
Q ss_pred CCccc--c-----ccHHHhcCcC--C--------CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927 304 EPTLF--R-----GSVRTNLDPL--G--------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366 (467)
Q Consensus 304 ~~~lf--~-----~tv~enl~~~--~--------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl 366 (467)
+|.++ . .|+.+++... + ..+..+....+...++.++. ....|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 88753 2 3778877421 1 01112333344554544332 125799999999
Q ss_pred HHHHHhcCCCCEEE
Q 044927 367 CLGRVLLKRNRILV 380 (467)
Q Consensus 367 ~iARal~~~p~ili 380 (467)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.47 E-value=5.5e-14 Score=143.43 Aligned_cols=147 Identities=16% Similarity=0.220 Sum_probs=93.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCcc-----EEEEcCEeCC-CCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISA--LFRLVEPENG-----RILIDGLDIC-SMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~--l~gl~~p~~G-----~i~i~g~~i~-~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
-|++|++++|+||||||||||++. +.+..+|+.| .+++++.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577776444 8889886531 1112234455666554 56677
Q ss_pred cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--cCCCCEEEeeCCCCCCCHHHH
Q 044927 316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILVLDEATASIDSATD 393 (467)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal--~~~p~iliLDEpts~LD~~~~ 393 (467)
+.+......++..+ .+.-++.+ -.+|+++++|||++.+|+...
T Consensus 247 i~~~~~~~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 65432222222211 11111121 257999999999999997533
Q ss_pred ------------HHHHHHHHHHC--CCceEEEEccChh-------------------HHhh-cCEEEEEeCCE
Q 044927 394 ------------AILQRIIREEF--PGSTVITVAHRVP-------------------TITD-SDMFMVLSYGE 432 (467)
Q Consensus 394 ------------~~i~~~l~~~~--~~~tvi~itH~l~-------------------~~~~-~d~i~vl~~G~ 432 (467)
..+.+.|+++. .+.|+|+++|... .+.+ +|.+++|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 44566666543 3899999999821 2344 89999998763
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.46 E-value=1.3e-16 Score=167.88 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=112.9
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHH
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRT 314 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e 314 (467)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +..++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46889999999999999999999999999999999999999999999865222211 345667776654111 14554
Q ss_pred hcCc----------CCCCCHHHHHHHHHHc--C-----------hHHHHHhC---CCccccccc-------CCCCCCChh
Q 044927 315 NLDP----------LGMYSDNEIWEAMEKC--Q-----------LKATISRL---PMLLDSSVS-------DEGENWSVG 361 (467)
Q Consensus 315 nl~~----------~~~~~~~~~~~~~~~~--~-----------l~~~i~~l---~~g~~t~v~-------~~g~~LSgG 361 (467)
++.. .+...+.+...+++.+ | ..+.+.++ |.++...+. .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 4321 1233333444433332 1 23334333 223222111 123457999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEE--EccChhHHhh-cC
Q 044927 362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVIT--VAHRVPTITD-SD 423 (467)
Q Consensus 362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~--itH~l~~~~~-~d 423 (467)
|+||.++|. + | |+|||+.....+.+.+.++. .++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 99999988776666666653 3788875 8999998764 64
No 138
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.46 E-value=2.2e-14 Score=143.84 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=80.0
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEEc-CEeCCCCCHHHHhcccEEEcCCCccccc-cHH
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILID-GLDICSMGLKDLRTKLSIIPQEPTLFRG-SVR 313 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p~~G~i~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~ 313 (467)
-++++++. .+|++++|+||||||||||+|+|+|+.. |.+|+|.++ |.+.. ...+..++++||++.++.. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47777774 5899999999999999999999999999 999999987 76542 1345679999999988865 888
Q ss_pred HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927 314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373 (467)
Q Consensus 314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~ 373 (467)
++-.. ..+.+++.+. ..+++..+ |+....+....+|| ||+||++||++++
T Consensus 280 e~~l~--~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC--CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc--CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 86421 2344443221 12222222 33333444557899 9999999999863
No 139
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.46 E-value=4.7e-14 Score=140.39 Aligned_cols=166 Identities=16% Similarity=0.102 Sum_probs=107.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH----Hhcc--cEEEcCCCccccc-cHHHhc
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----LRTK--LSIIPQEPTLFRG-SVRTNL 316 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~----~r~~--i~~v~Q~~~lf~~-tv~enl 316 (467)
..++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+......+ ++++ +.+++|+..+++. ++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999999999987765432 3333 5599998887754 888888
Q ss_pred CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927 317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396 (467)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i 396 (467)
.... ...... .-+||. |.. ..-..=..+.-.++|++..++++++||.+|. .|... .
T Consensus 205 ~~~~----------~~~~d~--------vliDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~---~ 260 (328)
T 3e70_C 205 QHAK----------ARGIDV--------VLIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE---Q 260 (328)
T ss_dssp HHHH----------HHTCSE--------EEEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH---H
T ss_pred HHHH----------hccchh--------hHHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH---H
Confidence 4210 000000 001221 100 0011123445569999999999999996655 33322 1
Q ss_pred HHHHHHHCCCceEEEEccChhH---------Hh-hcCEEEEEeCCEEE
Q 044927 397 QRIIREEFPGSTVITVAHRVPT---------IT-DSDMFMVLSYGELV 434 (467)
Q Consensus 397 ~~~l~~~~~~~tvi~itH~l~~---------~~-~~d~i~vl~~G~iv 434 (467)
.+.+.+ ..+.|.|++||--.+ +. ..-.|..+..|+-+
T Consensus 261 ~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 ARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 122222 137899999994432 11 24578888888764
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.43 E-value=9.4e-14 Score=122.56 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=68.8
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G--~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 45555 8999999999999999999999999987 46 555554322110
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~ 394 (467)
+++.+|++|+||||++ +|+..++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2356899999999998 6655577
Q ss_pred HHHHHHHHHC-CCce-EEEEccC
Q 044927 395 ILQRIIREEF-PGST-VITVAHR 415 (467)
Q Consensus 395 ~i~~~l~~~~-~~~t-vi~itH~ 415 (467)
.+.+.+.... ++++ +|++||+
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 8888887754 3677 8888885
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.42 E-value=1.1e-13 Score=125.58 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=74.6
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCC
Q 044927 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 321 (467)
Q Consensus 242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~ 321 (467)
++++++|+.++|+||||+|||||++++++.+.|.+|... .|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHHHHH-----
Confidence 467788999999999999999999999999876665210 010 111111
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC-CCCHHHHHHHHHHH
Q 044927 322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA-SIDSATDAILQRII 400 (467)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts-~LD~~~~~~i~~~l 400 (467)
+++..... . + ... -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 80 ---~~~~~~~~---------~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 80 ---FRLKHLMD---------E---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ---HHHHHHHH---------H---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ---HHHHHHhc---------C---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 01111100 0 0 000 0112234899999999995 89999999999988
Q ss_pred HHHC-CCceEEEEccChh
Q 044927 401 REEF-PGSTVITVAHRVP 417 (467)
Q Consensus 401 ~~~~-~~~tvi~itH~l~ 417 (467)
.... +++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 7754 6899999999764
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.41 E-value=6.6e-16 Score=150.27 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=103.0
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC-cccc-ccHH
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFR-GSVR 313 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~ 313 (467)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++......+.++.+++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999887 79999998887655566677899999986 3333 3678
Q ss_pred HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC-------
Q 044927 314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA------- 386 (467)
Q Consensus 314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts------- 386 (467)
||+.......... .. . .......+++ ..|||||+||+.+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~--~~-~--~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--ET-G--ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC--------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--cc-h--HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 8886432111100 00 0 0111122221 358999999999999999999975 99975
Q ss_pred -----CCCHHHHHHHHHHHH
Q 044927 387 -----SIDSATDAILQRIIR 401 (467)
Q Consensus 387 -----~LD~~~~~~i~~~l~ 401 (467)
--|...+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 226666666666553
No 143
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.38 E-value=6.3e-14 Score=138.12 Aligned_cols=114 Identities=16% Similarity=0.068 Sum_probs=79.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHh-cccEEEcCCCccc------cccH
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLR-TKLSIIPQEPTLF------RGSV 312 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~tv 312 (467)
+++.+|++++++||||||||||+|+|+ +.+|++|+|.+ +|.++..... ..+ +.+||++|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345679999999999999999999999 99999999999 9988765432 222 3699999998542 3478
Q ss_pred HHhc--CcC---------CC-----CCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 313 RTNL--DPL---------GM-----YSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 313 ~enl--~~~---------~~-----~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
+|+ .+. .. .....+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 787 221 11 12245778888888864 455544 568998889999987
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.34 E-value=6.9e-15 Score=145.45 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=94.1
Q ss_pred ccEEEEeEEEEeCCCCCceecceeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhcCCC--CCcc
Q 044927 219 GRIELEDLKVRYRPNTPLVLKGITCTF-------------------KEGTRVGVVGRTGSGKTTLISALFRLVE--PENG 277 (467)
Q Consensus 219 ~~i~~~~vs~~y~~~~~~~L~~isl~i-------------------~~Ge~~~ivG~sGsGKSTll~~l~gl~~--p~~G 277 (467)
+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4589999999993 4899999988 8999999999999999999999999998 9999
Q ss_pred EEEE---cCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccC
Q 044927 278 RILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD 353 (467)
Q Consensus 278 ~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~ 353 (467)
+|.+ ||.... ...++.++++ |+..++. .|+.+|+.+.. ....-.. .-..| -++
T Consensus 112 ~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~-----------~l~~~~~-~i~~P-~~~----- 168 (308)
T 1sq5_A 112 RVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS-----------DLKSGVP-NVTAP-VYS----- 168 (308)
T ss_dssp CEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH-----------HHTTTCS-CEEEC-CEE-----
T ss_pred eEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH-----------HHhCCCC-ceecc-ccc-----
Confidence 9999 887642 2345668888 7665543 36666653210 0000000 00111 111
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927 354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390 (467)
Q Consensus 354 ~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~ 390 (467)
.+.+ +|+..+.+.+.+|+++|+|.|....++
T Consensus 169 ----~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 ----HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ----TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ----cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1222 233333355678999999999988774
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.30 E-value=7.1e-13 Score=130.54 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=68.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHhcccEEEcCCCc-------------
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPT------------- 306 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 306 (467)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.+++|+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9998876542211246999999984
Q ss_pred ---cccc-cHHHhcCcCC----CCCHHHHHHHHHHcCh-HHHHHhCC
Q 044927 307 ---LFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQL-KATISRLP 344 (467)
Q Consensus 307 ---lf~~-tv~enl~~~~----~~~~~~~~~~~~~~~l-~~~i~~l~ 344 (467)
+|+. |+ +|+.+.. ......+.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3543 77 8887532 1223568889999999 46666666
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=2.4e-13 Score=139.36 Aligned_cols=152 Identities=15% Similarity=0.218 Sum_probs=91.8
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
-++++|+++.|+.++|+|+||||||||++.|+|..+ .+.+.+...+ ...+++++++.. ...++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999853 3444443332 345777777641 1112233221
Q ss_pred cC------CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHH
Q 044927 318 PL------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391 (467)
Q Consensus 318 ~~------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~ 391 (467)
+. ..... ...+..+.+.. .+.. +|-. .+...+||+|++|++++|++|..+|.++++ +.+|+.
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~~--lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTRV--LLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSSE--EEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHHHh--hhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 11 01111 11111111110 0100 1110 122356899999999999999999999999 999987
Q ss_pred HHHHHHHHHHH-H-CCCceEEEEcc
Q 044927 392 TDAILQRIIRE-E-FPGSTVITVAH 414 (467)
Q Consensus 392 ~~~~i~~~l~~-~-~~~~tvi~itH 414 (467)
... ..+.+.+ . ..+.+++.+|.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEEC
Confidence 653 3333333 2 23667766653
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.28 E-value=6.6e-15 Score=139.17 Aligned_cols=176 Identities=7% Similarity=0.084 Sum_probs=70.6
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHH-HHhcccEEEcCCCccccc-cHH
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLK-DLRTKLSIIPQEPTLFRG-SVR 313 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i~~v~Q~~~lf~~-tv~ 313 (467)
..+++||++++|++++|+||||||||||+++|+ |++++. .++.++....+. ..+..++|.++++..|.. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence 578999999999999999999999999999999 998541 222222111111 011234566666655533 333
Q ss_pred HhcC----cCCC---CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCC--hhHHHHH-HHH-HHhcCCCCEEEee
Q 044927 314 TNLD----PLGM---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS--VGQRQLF-CLG-RVLLKRNRILVLD 382 (467)
Q Consensus 314 enl~----~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS--gGq~Qrl-~iA-Ral~~~p~iliLD 382 (467)
+++. +... ...+++.+.++... ...+. ..+. ..-++++ .-+ ..++..|+..++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~ 155 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRKNLEDNVDKGV------------STLLV---IDWQGAFKFMEMMREHVVSIFIMPPSMEELR 155 (231)
T ss_dssp TCEEEEEEETTEEEEEECTTHHHHHHHTC------------EEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHHHHH
T ss_pred CceehhhhhccccCCCCHHHHHHHHHcCC------------eEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHHHHH
Confidence 3332 1110 11223333333211 00000 0001 1113333 112 2345677888899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHC------CCceEEEEccChhHHh-hcCEEEEEeCCE
Q 044927 383 EATASIDSATDAILQRIIREEF------PGSTVITVAHRVPTIT-DSDMFMVLSYGE 432 (467)
Q Consensus 383 Epts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~~~~-~~d~i~vl~~G~ 432 (467)
|++.+.|..++..+.+.+.... +....+++.|+++.+. ..++++-..+++
T Consensus 156 ~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 156 RRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp HC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 9999999888777766554321 1345666666665433 345544333343
No 148
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.23 E-value=4.6e-14 Score=143.40 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=109.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc------------CCCCCccEEEEcCEeCCCCCH-HHHhccc---EEEcCCCcc
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFR------------LVEPENGRILIDGLDICSMGL-KDLRTKL---SIIPQEPTL 307 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~g------------l~~p~~G~i~i~g~~i~~~~~-~~~r~~i---~~v~Q~~~l 307 (467)
++++|.+++|+|+||||||||++.|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 667999999998743211100 0001122 356676666
Q ss_pred ccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCC
Q 044927 308 FRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEA 384 (467)
Q Consensus 308 f~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEp 384 (467)
..+ +..+++. .+....++.+.. +... ++..-......+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~-------~~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG-------NAFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC-------HHHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH-------HHHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchhh
Confidence 543 3333331 122222222211 0000 0100012233456652 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-CC-CceEEEEccChhHHhh-cCEEE-EEeCC-EEEEecCh
Q 044927 385 TASIDSATDAILQRIIREE-FP-GSTVITVAHRVPTITD-SDMFM-VLSYG-ELVEYDLP 439 (467)
Q Consensus 385 ts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~l~~~~~-~d~i~-vl~~G-~iv~~g~~ 439 (467)
++.+|+...+..++.++.. .. |.|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999988888888876 44 5564 3999988765 99999 99999 88876653
No 149
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.20 E-value=5e-12 Score=131.30 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=55.4
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 290 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~ 290 (467)
.+.+++... ..+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 455555443 1379999999999 999999999999999999999999999999999999887554
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.17 E-value=2.3e-11 Score=119.80 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=72.0
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 320 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~ 320 (467)
++++.++|++++++|||||||||++..|++.+.+..|+|.+.+.|.... + ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------HH-------
Confidence 3445678999999999999999999999999999999999987664210 0 01
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH---HHHHHhcCCCCEEEeeCCCC
Q 044927 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF---CLGRVLLKRNRILVLDEATA 386 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl---~iARal~~~p~iliLDEpts 386 (467)
+++...++..+ +| . + ...|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 149 ----eqL~~~~~~~g-------l~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKIWGERVG-------AT----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHHHHHHHT-------CE----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHHHHHHcC-------Cc----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11222222211 11 1 1 24589999999 99999999999999999974
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.17 E-value=3.1e-11 Score=118.42 Aligned_cols=139 Identities=15% Similarity=0.155 Sum_probs=89.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHH
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 325 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~ 325 (467)
++|++++++|||||||||++..|++.+.+++| +++.++.+|++ ..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 47899999999999999999999999988778 24566666652 22222222
Q ss_pred HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-
Q 044927 326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF- 404 (467)
Q Consensus 326 ~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~- 404 (467)
....+..+ +| .... .+ +...+.+++++ ++|+++|+| |+++|+..+..+.+..+-..
T Consensus 154 --~~~~~~~g-------l~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 154 --KTYAELLQ-------AP----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp --HHHHTTTT-------CC----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred --HHHHHhcC-------CC----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 11111111 11 1110 12 34456677764 899999999 99999876655554433322
Q ss_pred --CCceEEEE--ccChhHHhh-cCEEEEEeCCEEEEe
Q 044927 405 --PGSTVITV--AHRVPTITD-SDMFMVLSYGELVEY 436 (467)
Q Consensus 405 --~~~tvi~i--tH~l~~~~~-~d~i~vl~~G~iv~~ 436 (467)
.+.+++++ +|..+.+.. ++++..++.|.++..
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 33345555 899877765 787777777777764
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.17 E-value=3.3e-11 Score=118.18 Aligned_cols=142 Identities=18% Similarity=0.086 Sum_probs=97.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
+.++++++.|++. . ++++|+ +|++++++|+||+||||++..|++++.+..|+|.+.+.|+..- ...
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~~------ 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AAR------ 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HHH------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hHH------
Confidence 4556666777432 1 678887 9999999999999999999999999999999999988765421 100
Q ss_pred EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927 301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380 (467)
Q Consensus 301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili 380 (467)
+ ++....+.. |++-... +......+.+|.+++++...+++++|
T Consensus 143 -------------~-----------ql~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 143 -------------E-----------QLRLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------H-----------HHHHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------H-----------HHHHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0 000001111 1111100 01123445678999999889999999
Q ss_pred eeCC-CCCCCHHHHHHHHHHHHHHCCCceEEEEc
Q 044927 381 LDEA-TASIDSATDAILQRIIREEFPGSTVITVA 413 (467)
Q Consensus 381 LDEp-ts~LD~~~~~~i~~~l~~~~~~~tvi~it 413 (467)
+||| ++++|......+.+..+....+.+++++.
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999 99999988888877777666676666554
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.15 E-value=6.9e-12 Score=115.55 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=56.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHHhcC
Q 044927 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLD 317 (467)
Q Consensus 242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~enl~ 317 (467)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 588888877766555557789999999988765 6666653
No 154
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=3.3e-12 Score=125.67 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=43.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHhcccEEEcCCCcccc-----ccHHH
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-----GSVRT 314 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~e 314 (467)
+++.+|++++|+||||||||||+|+|+|+.+|.+|+|.+ +|+++.... ...+..+++++|.|.++. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 566789999999999999999999999999999999999 888776532 122223899999997643 367 7
Q ss_pred hc
Q 044927 315 NL 316 (467)
Q Consensus 315 nl 316 (467)
|+
T Consensus 246 ~l 247 (307)
T 1t9h_A 246 EL 247 (307)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.10 E-value=7.9e-15 Score=146.65 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=94.9
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCC-------cEEEEEcCCCCcHHHHHHHHhcCC----CCCccEEEEcCEeCCCC
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEG-------TRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSM 289 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~G-------e~~~ivG~sGsGKSTll~~l~gl~----~p~~G~i~i~g~~i~~~ 289 (467)
++.++++..|+. ..+++++++.+++| +.++|+||||+|||||+++++|.+ .|.+|.+..++.++...
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 334455555643 34899999999877 899999999999999999999998 67778777666544221
Q ss_pred CHHHHhcccEEEcCCCccccccHHHhcCcC-CCC--C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927 290 GLKDLRTKLSIIPQEPTLFRGSVRTNLDPL-GMY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362 (467)
Q Consensus 290 ~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~-~~~--~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq 362 (467)
.....+..|.+++|...++. ++.|++... ... . ..... +. +...+. +.++.. ...+...||+|+
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~--~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQ--PFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCC--CeEEEE-ecCCcccCCHHH
Confidence 11111456999999877765 677766310 000 0 00000 00 001111 112211 123345799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE 403 (467)
Q Consensus 363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 403 (467)
|||++++ .+||+.+...+.+.+++.
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 9998654 667777777777777654
No 156
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.08 E-value=1.5e-12 Score=122.18 Aligned_cols=128 Identities=17% Similarity=0.193 Sum_probs=92.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC---CCCccEEEE--------cCEeCCC-CCHHHHhcccEEEcCCC------cccc
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV---EPENGRILI--------DGLDICS-MGLKDLRTKLSIIPQEP------TLFR 309 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~---~p~~G~i~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf~ 309 (467)
+.+++|+||+||||||+.++|++.+ .+++|.+.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 788999987 7876652 34556888999999976 3344
Q ss_pred ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccc-cCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC
Q 044927 310 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386 (467)
Q Consensus 310 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts 386 (467)
.++.+++. ++++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++|+.+++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 45666652 4667777777777777766544444433 2445666776 45667788999999888753
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.06 E-value=1.1e-11 Score=113.31 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=77.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CccEEEEcCEeCCC--CCHHHHhcccEEEcCCCcccc--ccHHH
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEP-----------ENGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFR--GSVRT 314 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p-----------~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~--~tv~e 314 (467)
+++|+|+||||||||++.++|...| .+|+|.++|.++.- ++....++..++++|...-.. -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57999999976531 111112222333333211000 01222
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHH-HhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATI-SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i-~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~ 393 (467)
+... .+.+.+...++. +.... ...| . -.++.+ ..|..-..+...+||+++.+|+++++| ||++|+...
T Consensus 111 ~~~~---~s~~~~~~~~~~--~~~~~~~~~~--i-~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKH---LTYENVERWLKE--LRDHADSNIV--I-MLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCH---HHHHTHHHHHHH--HHHHSCTTCE--E-EEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCH---HHHHHHHHHHHH--HHHhcCCCCc--E-EEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 2110 000111111110 00000 0011 0 011111 112222223478899999999999999 999999998
Q ss_pred HHHHHHHHH
Q 044927 394 AILQRIIRE 402 (467)
Q Consensus 394 ~~i~~~l~~ 402 (467)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 158
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.04 E-value=2.2e-11 Score=116.69 Aligned_cols=72 Identities=25% Similarity=0.257 Sum_probs=61.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEE--------EcCEeCC-CCCHHHHhcccEEEcCCC------cc
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDIC-SMGLKDLRTKLSIIPQEP------TL 307 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~---gl~~p~~G~i~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 307 (467)
++|++++|+|||||||||++++|+ |++.|++|.++ .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 445778899999999753 45
Q ss_pred ccccHHHhcC
Q 044927 308 FRGSVRTNLD 317 (467)
Q Consensus 308 f~~tv~enl~ 317 (467)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5567777764
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.03 E-value=3.6e-13 Score=130.89 Aligned_cols=136 Identities=18% Similarity=0.130 Sum_probs=94.8
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v 301 (467)
+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45666666742 34899999999999 99999999999999999999885 79999998776544334455668888
Q ss_pred cCCCc-ccc-ccHHHhcCc-CCCC------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 302 PQEPT-LFR-GSVRTNLDP-LGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 302 ~Q~~~-lf~-~tv~enl~~-~~~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+|++. .++ -++.||+.. .... ..++..+.+ ..++ ..|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88764 333 356777732 1110 011111111 1111 23699999999999999
Q ss_pred cCCCCEEEeeCCC
Q 044927 373 LKRNRILVLDEAT 385 (467)
Q Consensus 373 ~~~p~iliLDEpt 385 (467)
..+|++ ||++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67664
No 160
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.02 E-value=5e-12 Score=119.10 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=52.0
Q ss_pred cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH--------
Q 044927 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-------- 291 (467)
Q Consensus 220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-------- 291 (467)
.|+++|++..|+. ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5888988765521 456666 8999999999999999999999999999999999998843322
Q ss_pred HHHhcccEEEcCC
Q 044927 292 KDLRTKLSIIPQE 304 (467)
Q Consensus 292 ~~~r~~i~~v~Q~ 304 (467)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2246679999984
No 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.02 E-value=1.5e-10 Score=109.31 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=89.0
Q ss_pred eecce-eEEEeCCcEEEEEcCCCCcHHHHHHHH-hcCCCCCccEEEEcCEeCCCCCHHHH---hcccEEEcCCCcccccc
Q 044927 237 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLISAL-FRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGS 311 (467)
Q Consensus 237 ~L~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l-~gl~~p~~G~i~i~g~~i~~~~~~~~---r~~i~~v~Q~~~lf~~t 311 (467)
.|+++ .--+++|+.++|.||||||||||+..+ .+..+...+.+++++.. +..++ ..++++.+|+....
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~--- 83 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK--- 83 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH---
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC---
Confidence 46665 557899999999999999999995544 55555444555555432 23332 23456655543110
Q ss_pred HHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCC-
Q 044927 312 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASI- 388 (467)
Q Consensus 312 v~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~L- 388 (467)
+++....... .. .+. ....+ ....+. +....+....++.++ .+|+++++|+|++-+
T Consensus 84 --~~l~~~~~~~-~~-------~~~---~~~~~----~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 84 --GMFAMVDAFT-AG-------IGK---SKEYE----KYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp --TSEEEEECST-TT-------TCC-----CCC----SCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred --CcEEEEecch-hh-------ccc---ccccc----cccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 1221000000 00 000 00000 000010 112233333344443 479999999999988
Q ss_pred -CHHHHHHHHHHHHHH--CCCceEEEEccChhH--------H-hhcCEEEEEeC
Q 044927 389 -DSATDAILQRIIREE--FPGSTVITVAHRVPT--------I-TDSDMFMVLSY 430 (467)
Q Consensus 389 -D~~~~~~i~~~l~~~--~~~~tvi~itH~l~~--------~-~~~d~i~vl~~ 430 (467)
|+.........+.+. ..++|+|+++|.... + ..||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 553333343444332 247999999997764 3 34899999974
No 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.00 E-value=6.8e-10 Score=111.34 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=83.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-EEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY 322 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~ 322 (467)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. ...+++++-+|+ +....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQ-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEEC--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEec--
Confidence 478999999999999999999888875544434443 343321 1111 111222222211 10000
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC--CCEEEeeCCCCCC----------CH
Q 044927 323 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR--NRILVLDEATASI----------DS 390 (467)
Q Consensus 323 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~--p~iliLDEpts~L----------D~ 390 (467)
| .+. .|-+.++++++++ |+++++||+++-+ |+
T Consensus 121 ---------------------~-------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 121 ---------------------P-------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ---------------------C-------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ---------------------C-------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 0 011 2345577878755 9999999999998 32
Q ss_pred ---HHHHHHHHHHHHH-----CCCceEEEEccChh----------------HHh-hcCEEEEEeCCEEEEecC
Q 044927 391 ---ATDAILQRIIREE-----FPGSTVITVAHRVP----------------TIT-DSDMFMVLSYGELVEYDL 438 (467)
Q Consensus 391 ---~~~~~i~~~l~~~-----~~~~tvi~itH~l~----------------~~~-~~d~i~vl~~G~iv~~g~ 438 (467)
...+.+.+.++++ ..++|+|+++|-.. .++ .||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1222333333332 23899999999543 144 489999998876655443
No 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.98 E-value=9.7e-11 Score=106.71 Aligned_cols=127 Identities=13% Similarity=0.229 Sum_probs=52.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+...+...+ .++..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 666664 55544444433333321 1233333333333
Q ss_pred hcCcCCCCCHHHHHHHHHHc----------ChHHHHHh--------------CCCcccccccCCCCCCChhHHHHHHHHH
Q 044927 315 NLDPLGMYSDNEIWEAMEKC----------QLKATISR--------------LPMLLDSSVSDEGENWSVGQRQLFCLGR 370 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~----------~l~~~i~~--------------l~~g~~t~v~~~g~~LSgGq~Qrl~iAR 370 (467)
|+ +. .+.+.+.+.++.. ++.. +.. -++.+..++.++|..-....+||+.-|+
T Consensus 76 ~~-yg--~~~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YG--STVASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EE--EEHHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-cc--CcHHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33 11 1233444444331 1111 111 1134555666667666677788888888
Q ss_pred Hhc-----CCCCEEEeeC
Q 044927 371 VLL-----KRNRILVLDE 383 (467)
Q Consensus 371 al~-----~~p~iliLDE 383 (467)
.-+ ..++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 755 4567766654
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.95 E-value=3.5e-11 Score=129.58 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=102.5
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcccEEEcCCC--------
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEP-------- 305 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-------- 305 (467)
..+++++++.+++|+.+.|+||||+|||||+++|++++++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 348999999999999999999999999999999999999987 8888888665433 34588887754
Q ss_pred --------------cccc-ccHHHhcCcCCC-CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927 306 --------------TLFR-GSVRTNLDPLGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369 (467)
Q Consensus 306 --------------~lf~-~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA 369 (467)
+.|. .++.+|+..... .....+... ......+...... .. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~----~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR----HD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC----CC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE----ec-hhhcCCccccccccccCc
Confidence 1221 234444421100 000000000 0011111221111 00 112245899999999999
Q ss_pred HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 044927 370 RVLLKRNRILVLDEATASIDSATDAILQRIIRE 402 (467)
Q Consensus 370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 402 (467)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999999985
No 165
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.95 E-value=2.2e-11 Score=127.40 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=91.6
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 317 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~ 317 (467)
.+++++.++..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. ++.+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 4778889999999999999999999999886 67777788888888776543332221 122211 1111110
Q ss_pred c----CCCCCHHHH---HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH----------HHHHHhcCCCC-EE
Q 044927 318 P----LGMYSDNEI---WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF----------CLGRVLLKRNR-IL 379 (467)
Q Consensus 318 ~----~~~~~~~~~---~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl----------~iARal~~~p~-il 379 (467)
. ... ..+++ .+.+...++.+.. +|+..+ ...+|+||+|+. ++|+++...|. ++
T Consensus 231 ~a~~~L~~-~~~EmerR~~ll~~~Gv~~i~-----~yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALRW-CVNEMERRYKLMSALGVRNLA-----GYNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHTTCSSHH-----HHHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHcCCccHH-----HHHHHH---HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 0 000 00111 1222222221110 011001 023577877652 46777888898 78
Q ss_pred EeeCCCCCCCHHHHHHHHHHHH---HH-C-CCceEEEEccChh
Q 044927 380 VLDEATASIDSATDAILQRIIR---EE-F-PGSTVITVAHRVP 417 (467)
Q Consensus 380 iLDEpts~LD~~~~~~i~~~l~---~~-~-~~~tvi~itH~l~ 417 (467)
++||+++.+|... ..+.+.+. +. . -|.++|++|||++
T Consensus 302 vIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999887432 22333332 32 2 2889999999987
No 166
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.94 E-value=9.6e-13 Score=125.94 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=95.4
Q ss_pred EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300 (467)
Q Consensus 221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~ 300 (467)
.+++++++.|.. +.+++++++++++| ++|+||||||||||++++++... .|.+.++|.++........++.+++
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 456677777742 34899999999999 99999999999999999999875 7899999877644433444566778
Q ss_pred EcCCCc-ccc-ccHHHhcC-cCCC-C-----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927 301 IPQEPT-LFR-GSVRTNLD-PLGM-Y-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371 (467)
Q Consensus 301 v~Q~~~-lf~-~tv~enl~-~~~~-~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa 371 (467)
++|+.. .++ -++.|++. +... . ..++..+.+ ..++ ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 332 35667763 1111 0 111111111 1112 2368999999999999
Q ss_pred hcCCCCEEEeeCCCC
Q 044927 372 LLKRNRILVLDEATA 386 (467)
Q Consensus 372 l~~~p~iliLDEpts 386 (467)
+..+|++ ||++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 788764
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.91 E-value=5.4e-10 Score=116.11 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=108.4
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhccc-EEEcCCCccccccHHH
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKL-SIIPQEPTLFRGSVRT 314 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~tv~e 314 (467)
.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...++.++ +....-+ .+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------AQ 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------HH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------HH
Confidence 68888878999999999999999999999999987766545 56665533 3444444332 1111100 01
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCCCH--
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASIDS-- 390 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~LD~-- 390 (467)
.+. .+..++++...+.+.. +.+...|- .+.+ ...+|.+|.+ +.+|.+. .+|+++++|+++.-.++
T Consensus 262 ~l~-~g~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~ 330 (454)
T 2r6a_A 262 NLR-TGKLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGR 330 (454)
T ss_dssp HHH-TSCCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC
T ss_pred HHh-cCCCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCC
Confidence 111 1233444433332221 12222221 1111 2468999876 5677776 68999999999997743
Q ss_pred ------HHHHHHHHHHHHHC--CCceEEEEcc---------C--hh--------HHh-hcCEEEEEeCCEE
Q 044927 391 ------ATDAILQRIIREEF--PGSTVITVAH---------R--VP--------TIT-DSDMFMVLSYGEL 433 (467)
Q Consensus 391 ------~~~~~i~~~l~~~~--~~~tvi~itH---------~--l~--------~~~-~~d~i~vl~~G~i 433 (467)
.....+.+.|+.+. .+++||+++| + +. .++ .||.|++|+.++.
T Consensus 331 ~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 331 SKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 12245555666543 3799999999 1 32 344 4999999987654
No 168
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.87 E-value=1.2e-09 Score=118.64 Aligned_cols=132 Identities=23% Similarity=0.238 Sum_probs=93.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL 319 (467)
Q Consensus 242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~ 319 (467)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|.+.++..++..|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456789999999999999999999999987665 67988 789899999888889999999999988877777777311
Q ss_pred CCCCH--HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927 320 GMYSD--NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397 (467)
Q Consensus 320 ~~~~~--~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~ 397 (467)
+...+ .+...++. ..++-++++| |+.++++.++..+.
T Consensus 82 pG~~~f~~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHHH
Confidence 11111 11111111 2456677778 88888887775443
Q ss_pred HHHHHHCCCceEEEEccChhH
Q 044927 398 RIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 398 ~~l~~~~~~~tvi~itH~l~~ 418 (467)
.. ++ .+.++|++.|.++.
T Consensus 121 ~~-~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VA-ER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp HH-HH--TTCCEEEEEECGGG
T ss_pred HH-HH--ccCCEEEEecCCch
Confidence 33 22 35677778887664
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.82 E-value=3.9e-11 Score=121.36 Aligned_cols=136 Identities=18% Similarity=0.104 Sum_probs=87.3
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
.+++++|+++++|+.++|+||||||||||+++|+|. .+|++...+ .. ...++..++++||.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence 479999999999999999999999999999999996 367776511 11 122233478889887543 233
Q ss_pred cCcCCC----C-CHHHHHHHHHHcChHHHHHh---------CCCccc-----ccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927 316 LDPLGM----Y-SDNEIWEAMEKCQLKATISR---------LPMLLD-----SSVSDEGENWSVGQRQLFCLGRVLLKRN 376 (467)
Q Consensus 316 l~~~~~----~-~~~~~~~~~~~~~l~~~i~~---------l~~g~~-----t~v~~~g~~LSgGq~Qrl~iARal~~~p 376 (467)
+..... . ....+. ....+.+.++. .|+.++ -.+..+...+++|++||++.+.++..+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332111 1 000100 11122333321 011010 1234455678999999999998899999
Q ss_pred CEEE-eeCCCC
Q 044927 377 RILV-LDEATA 386 (467)
Q Consensus 377 ~ili-LDEpts 386 (467)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9998 999997
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.80 E-value=2e-09 Score=98.48 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 044927 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE 402 (467)
Q Consensus 366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 402 (467)
...||+++.+|+++++| ||++|+.....+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999888777777654
No 171
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.73 E-value=2.1e-09 Score=98.74 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=64.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 309 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 309 (467)
+...+|+.++|+||||||||||++.|++.++ |..|+ ++|++..-++..++++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4456899999999999999999999999886 77887 689888778888888765 68889999
Q ss_pred ccHHHhcCcCCCCCHHHHHHHHHH
Q 044927 310 GSVRTNLDPLGMYSDNEIWEAMEK 333 (467)
Q Consensus 310 ~tv~enl~~~~~~~~~~~~~~~~~ 333 (467)
+++.+|. ++ .+.+.+.++++.
T Consensus 89 ~~~~~n~-YG--t~~~~v~~~l~~ 109 (197)
T 3ney_A 89 GSYQGNM-FG--TKFETVHQIHKQ 109 (197)
T ss_dssp EEETTEE-EE--EEHHHHHHHHHT
T ss_pred hhhhcee-cc--cchhhHHHHHhc
Confidence 9999995 32 234455555543
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.69 E-value=1.8e-09 Score=97.70 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=49.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEE----------cCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILI----------DGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i----------~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
.+|++++|+||||||||||++.|++++++ ..|.|.. +|.+....+...+++. +.|+.+++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999874 4455543 4544444455555542 45667777777777
Q ss_pred hc
Q 044927 315 NL 316 (467)
Q Consensus 315 nl 316 (467)
|.
T Consensus 80 n~ 81 (180)
T 1kgd_A 80 AM 81 (180)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.64 E-value=3.3e-08 Score=102.83 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=75.6
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 315 (467)
..++++++++++| +.|+||+|+|||||++++++.... | ++.-+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHH
Confidence 3577888888887 889999999999999999983210 0 111111111
Q ss_pred cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCC----------
Q 044927 316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT---------- 385 (467)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpt---------- 385 (467)
... + +| .|++++|-.+++|....|.+|++||+.
T Consensus 86 ~~~---~----------------------------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VEL---F----------------------------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTC---C----------------------------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHH---H----------------------------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 110 0 01 267888999999999999999999994
Q ss_pred CCCCHHHHHHHHHHHHHH-----CCCceEEEEccChhHH
Q 044927 386 ASIDSATDAILQRIIREE-----FPGSTVITVAHRVPTI 419 (467)
Q Consensus 386 s~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~l~~~ 419 (467)
++.|++.++.+.+.+... ..+..+|.+||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 356666665555555443 2367889999998654
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.63 E-value=3.1e-09 Score=97.76 Aligned_cols=63 Identities=21% Similarity=0.126 Sum_probs=44.1
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 308 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 308 (467)
-.++.++|++++|+|||||||||++++|++.+ |.+.++|.++... ....+..+++++|++..+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 34667899999999999999999999999987 8999999776421 111223568888875443
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.63 E-value=1.1e-08 Score=93.93 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=42.2
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEPTLF 308 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 308 (467)
+++++|++++|+|||||||||++++|++++.|+.| .+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i---~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSI---SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCC---CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEec---ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977665 22 22222111 11233588899887544
No 176
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.62 E-value=2.9e-09 Score=101.77 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=35.6
Q ss_pred cEEEEeE-EEEeCCCCCceecceeEEEeC---CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 220 RIELEDL-KVRYRPNTPLVLKGITCTFKE---GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 220 ~i~~~~v-s~~y~~~~~~~L~~isl~i~~---Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++++|+ +|+|++ ...+|+|+||+|++ |++++|+|++||||||+.+.|++.+
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999855
No 177
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.60 E-value=1.1e-09 Score=100.78 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=45.2
Q ss_pred EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE--EEcCEeC
Q 044927 224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI--LIDGLDI 286 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i--~i~g~~i 286 (467)
+|++..+.. ..+.+..++..++|++++|+|||||||||+++.|++.+. ..|.+ ++||.++
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 345555432 236788888899999999999999999999999999987 67988 8888554
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.59 E-value=2e-08 Score=101.27 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=81.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcc----ccccHH-
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVE-----------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL----FRGSVR- 313 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~-----------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~tv~- 313 (467)
+++|+|++|||||||++.|+|... |..|.|.++|.++. +....|++.|.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999875 67799999997652 23346666664431 222222
Q ss_pred ----HhcCcCCCCCHHH--HHHHHHHcChHHHHHhCC-Ccc-cccccCCCCCCChhHHHHHHHH----HHh-cCCCCEEE
Q 044927 314 ----TNLDPLGMYSDNE--IWEAMEKCQLKATISRLP-MLL-DSSVSDEGENWSVGQRQLFCLG----RVL-LKRNRILV 380 (467)
Q Consensus 314 ----enl~~~~~~~~~~--~~~~~~~~~l~~~i~~l~-~g~-~t~v~~~g~~LSgGq~Qrl~iA----Ral-~~~p~ili 380 (467)
+++.+.-+.++.. ..+..+. ..+.+..+. .+. --.++.+...+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1221111111111 1111111 111222210 011 1122334445788888988877 666 445554
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHH
Q 044927 381 LDEATASIDSATDAILQRIIREE 403 (467)
Q Consensus 381 LDEpts~LD~~~~~~i~~~l~~~ 403 (467)
+|+|++|......+.+.|.+.
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHH
Confidence 899999998888888877653
No 179
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.55 E-value=1.6e-08 Score=93.19 Aligned_cols=47 Identities=28% Similarity=0.294 Sum_probs=40.4
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 310 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 310 (467)
+-=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 334678899999999999999999999999875 37889999888865
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.55 E-value=1.7e-09 Score=113.23 Aligned_cols=138 Identities=18% Similarity=0.167 Sum_probs=94.7
Q ss_pred EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301 (467)
Q Consensus 222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v 301 (467)
+++++...|.+ +.+++++++++++| +.|+||+|+|||||+++|++... .|.+.++|.++.+......++++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 45555555532 34789999999999 99999999999999999999875 78999999887655444445567788
Q ss_pred cCCCc-cccc-cHHHhcCcCC-CC------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927 302 PQEPT-LFRG-SVRTNLDPLG-MY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372 (467)
Q Consensus 302 ~Q~~~-lf~~-tv~enl~~~~-~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal 372 (467)
+|... .++. .+.|++.... .. ..++..+.+. .++. .||||++|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEEe
Confidence 88764 2333 5567774221 10 1222222221 1222 2578888888899999
Q ss_pred cCCCCEEEeeCCCCC
Q 044927 373 LKRNRILVLDEATAS 387 (467)
Q Consensus 373 ~~~p~iliLDEpts~ 387 (467)
..+|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 999987 8888753
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.54 E-value=1.4e-08 Score=100.55 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=54.1
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHH-----hcccEEE-cCC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL-----RTKLSII-PQE 304 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~ 304 (467)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 467888889999999999999999999999999999999999998887754321 233 4567777 554
No 182
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.48 E-value=2.5e-07 Score=92.61 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=45.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-EEcCEeCCCCCHHHHhcccEEEcCCCc
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPT 306 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 306 (467)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+.. + ..+.+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhh
Confidence 378999999999999999999999999888777865 66664322 2 224456777766543
No 183
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.46 E-value=2.2e-08 Score=90.20 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=47.2
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE--eCCCCC----HHHHhcccEEEcCCC
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL--DICSMG----LKDLRTKLSIIPQEP 305 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~--~i~~~~----~~~~r~~i~~v~Q~~ 305 (467)
+++++++.+| +.+|+||||||||||+++|.+++.+..|...-.+. ++-... ....+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988887765432221 111110 002345688999986
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.39 E-value=2.1e-07 Score=93.53 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=35.7
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEEcCE
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGL 284 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p~~G~i~i~g~ 284 (467)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.+.-...
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 37899999998 999999999999999999999 77888887654443
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.38 E-value=1.6e-07 Score=86.26 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH---hhcCEEEEEeC
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI---TDSDMFMVLSY 430 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~---~~~d~i~vl~~ 430 (467)
+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+... ..||++++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678999999999998888654333 3455676666666666543 355888888987654 45899999863
No 186
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.37 E-value=2.4e-08 Score=93.96 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=49.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------CHHH----HhcccEEEcCCCcccc
Q 044927 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------GLKD----LRTKLSIIPQEPTLFR 309 (467)
Q Consensus 242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf~ 309 (467)
+.+.++|++++|.|+|||||||++++|.|+ .|+|.+.+.+.... .... .++.+++++|.+.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345588999999999999999999999998 78999998875321 1211 1456889999876654
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=7.2e-08 Score=89.21 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=29.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEE
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRI 279 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i 279 (467)
++|++++|+||||||||||++.|++.++| ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 58999999999999999999999999987 33433
No 188
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.35 E-value=1.3e-06 Score=87.72 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=49.1
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEee-CCCCCCCHHHHHHHHHHHHHHCCCceEEEEc--cChh
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLD-EATASIDSATDAILQRIIREEFPGSTVITVA--HRVP 417 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~l~ 417 (467)
..+|+|++|++. +.+...++-++++| ++++++|......+.+.+.+...++.+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 457999999887 66666777889999 9999999998888888777765578888888 7764
No 189
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.33 E-value=7.6e-07 Score=98.20 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=53.3
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHCC-CceEEE-EccChhHHhh-cC
Q 044927 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATA-SIDSATDAILQRIIREEFP-GSTVIT-VAHRVPTITD-SD 423 (467)
Q Consensus 356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~l~~~~~-~d 423 (467)
.-+|+|+.+|..++++++.+++++|+|||.. ++|......+.+.+....+ .+++++ .||+.+.+.. ++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 4568999999999999999999999999997 8998776666666655544 466666 4898876653 44
No 190
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=2.4e-07 Score=84.86 Aligned_cols=38 Identities=29% Similarity=0.283 Sum_probs=24.9
Q ss_pred CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999766
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.22 E-value=8.3e-07 Score=90.88 Aligned_cols=159 Identities=23% Similarity=0.170 Sum_probs=91.6
Q ss_pred EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-HhcccEEEc
Q 044927 224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLSIIP 302 (467)
Q Consensus 224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i~~v~ 302 (467)
+++++.|++.. ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++. .
T Consensus 80 ~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~-~---- 148 (425)
T 2ffh_A 80 EALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL-L---- 148 (425)
T ss_dssp HHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH-H----
T ss_pred HHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH-h----
Confidence 44555554321 567777 89999999999999999999999999999999999887765422211 111 0
Q ss_pred CCCccccccHHHhcCcC--C-CCCHHHHHHHHHHcChHHHHHhC-CCcccccccCCCCCCC---hhHHHHHHHHHHhcCC
Q 044927 303 QEPTLFRGSVRTNLDPL--G-MYSDNEIWEAMEKCQLKATISRL-PMLLDSSVSDEGENWS---VGQRQLFCLGRVLLKR 375 (467)
Q Consensus 303 Q~~~lf~~tv~enl~~~--~-~~~~~~~~~~~~~~~l~~~i~~l-~~g~~t~v~~~g~~LS---gGq~Qrl~iARal~~~ 375 (467)
.-..|+... . ..+..++. .+.+..+ ..++|..+=+-+..++ .-..+...+++++..+
T Consensus 149 --------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd 212 (425)
T 2ffh_A 149 --------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPD 212 (425)
T ss_dssp --------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCS
T ss_pred --------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCc
Confidence 001233211 1 12223331 1222222 2456655544333333 3466777888888767
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEcc
Q 044927 376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414 (467)
Q Consensus 376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 414 (467)
+-++++| ++++.|.... .+.+.+. -+.+-+++|+
T Consensus 213 ~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 213 EVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp EEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred eEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence 6778888 5566555432 1223322 2456667776
No 192
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.21 E-value=4.4e-06 Score=82.98 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=64.7
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl 316 (467)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+.|. |+.=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl-------------------~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA-------------------VFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE-------------------EEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE-------------------EEeC-------------
Confidence 46666557899999999999999999999888765432222222 2210
Q ss_pred CcCCCCCHHHHHH----HHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCC
Q 044927 317 DPLGMYSDNEIWE----AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389 (467)
Q Consensus 317 ~~~~~~~~~~~~~----~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD 389 (467)
+.+.+++.. ......+..... ..||++++||++.|...+.+++++|.|+|...+|
T Consensus 83 ----Ems~~ql~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ----EMSAEQLALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ----SSCHHHHHHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ----CCCHHHHHHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 112222211 111222222211 2588888999888888888888888888865543
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.19 E-value=3.3e-07 Score=84.21 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=40.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 290 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~ 290 (467)
..++|++++|+|+|||||||+++.|.+++++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35789999999999999999999999999988999988776654443
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.18 E-value=1.8e-06 Score=88.48 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~ 287 (467)
++.+++++||+||||||++..|++.+.+..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999998899988776653
No 195
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.16 E-value=7.4e-08 Score=101.99 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=48.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEE-EcCEeCCC-------CCHH---HHhcccEEEcCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RIL-IDGLDICS-------MGLK---DLRTKLSIIPQE 304 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~ 304 (467)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.++.. ++.. ..++++++++|+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999987 785 89866532 2221 234567888876
No 196
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.13 E-value=3.1e-07 Score=91.99 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=48.8
Q ss_pred cccEEEEeEEEEeCCCCCceec--------------ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 218 HGRIELEDLKVRYRPNTPLVLK--------------GITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~--------------~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+.+.|+||++.|+.. +..|+ |+++.+.+|++++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3579999999999865 45788 899999999999999999999999999999875
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.10 E-value=1.4e-06 Score=86.15 Aligned_cols=28 Identities=32% Similarity=0.297 Sum_probs=25.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+++|+.+.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5799999999999999999999988764
No 198
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.05 E-value=5.5e-07 Score=88.92 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=37.1
Q ss_pred ceecceeEEEeCCc------EEEEEcCCCCcHHHHHHHHhcCCC--CCccEEEE
Q 044927 236 LVLKGITCTFKEGT------RVGVVGRTGSGKTTLISALFRLVE--PENGRILI 281 (467)
Q Consensus 236 ~~L~~isl~i~~Ge------~~~ivG~sGsGKSTll~~l~gl~~--p~~G~i~i 281 (467)
..|++++..+.+++ ++||+|||||||||++++|.+++. |++|.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 36777777777766 999999999999999999999987 45555433
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.02 E-value=1.3e-06 Score=78.01 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=33.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~ 287 (467)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88999886654
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.99 E-value=9.7e-06 Score=81.28 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=33.9
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC----CCceEEEEccChhHH
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEF----PGSTVITVAHRVPTI 419 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~~ 419 (467)
.+|.++++||+... |+.....+.+.+.+.. .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 8877777777765432 367899999988543
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.94 E-value=4.4e-06 Score=83.36 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=25.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 202
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=1.5e-06 Score=86.40 Aligned_cols=42 Identities=31% Similarity=0.324 Sum_probs=37.4
Q ss_pred ceecceeEEEeCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 044927 236 LVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENG 277 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~gl~~p~~G 277 (467)
.+++.++..++.|+. +.+.||+|+||||+++.+++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998766544
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.92 E-value=2.7e-05 Score=75.39 Aligned_cols=71 Identities=8% Similarity=-0.012 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHH----------HHHHHHHHHHHHC-----CCceEEEEccChhHH----
Q 044927 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSA----------TDAILQRIIREEF-----PGSTVITVAHRVPTI---- 419 (467)
Q Consensus 359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~----------~~~~i~~~l~~~~-----~~~tvi~itH~l~~~---- 419 (467)
+++++.|..++++...+|.+|++||+.+-++.. ....+...+.... .+..+|.+|++++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777888888888899999999998776532 2223444444432 234577788876432
Q ss_pred -hhcCEEEEEe
Q 044927 420 -TDSDMFMVLS 429 (467)
Q Consensus 420 -~~~d~i~vl~ 429 (467)
+.+++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 3477665553
No 204
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.89 E-value=1.7e-06 Score=91.74 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=48.9
Q ss_pred EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 302 (467)
Q Consensus 223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 302 (467)
++++...|. ...+++++++++ +|+.++|+||||+|||||+++|++...+..|+|.++|......-....++.+|+++
T Consensus 86 ~~~vk~~i~--~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~ 162 (543)
T 3m6a_A 86 LEKVKERIL--EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP 162 (543)
T ss_dssp CHHHHHHHH--HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred HHHHHHHHH--HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence 345555553 124678888888 89999999999999999999999999999999988875332111122345566666
Q ss_pred CCC
Q 044927 303 QEP 305 (467)
Q Consensus 303 Q~~ 305 (467)
|..
T Consensus 163 ~~~ 165 (543)
T 3m6a_A 163 GRI 165 (543)
T ss_dssp -CH
T ss_pred hHH
Confidence 643
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.87 E-value=1.3e-06 Score=78.44 Aligned_cols=40 Identities=35% Similarity=0.440 Sum_probs=32.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDI 286 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G--~i~i~g~~i 286 (467)
++|++++|+|++||||||+.+.|.+.++| .| .+.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666776443
No 206
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.85 E-value=3.7e-06 Score=82.29 Aligned_cols=145 Identities=17% Similarity=0.120 Sum_probs=74.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHH
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNE 326 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~ 326 (467)
++.+++|+|++|+|||||++.|+|.. +.+.. .......++..++++++..-+. +.| .++ ... +
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s----~~~~tTr~~~~gi~~~~~~~i~--~iD--TpG--~~~-~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITS----RKAQTTRHRIVGIHTEGAYQAI--YVD--TPG--LHM-E 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECC----CCSSCCSSCEEEEEEETTEEEE--EES--SSS--CCH-H
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccC----CCCCcceeeEEEEEEECCeeEE--EEE--CcC--CCc-c
Confidence 34589999999999999999999863 21111 1111112334677777643111 111 111 110 1
Q ss_pred HHHHHHHcChHHHHHhCCC---cccc--cccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCCCHHH-HHHHHH
Q 044927 327 IWEAMEKCQLKATISRLPM---LLDS--SVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASIDSAT-DAILQR 398 (467)
Q Consensus 327 ~~~~~~~~~l~~~i~~l~~---g~~t--~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~LD~~~-~~~i~~ 398 (467)
....+.. .+...... ..|- .+-+... +|+|++ .+++++. ..|.++++ +.+|... ...+.+
T Consensus 70 ~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~ 137 (301)
T 1ega_A 70 EKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP 137 (301)
T ss_dssp HHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred chhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence 1111110 11111111 1121 1122223 898886 4566665 67888888 6788765 455556
Q ss_pred HHHHHCC--C--ceEEEEccChhHHh
Q 044927 399 IIREEFP--G--STVITVAHRVPTIT 420 (467)
Q Consensus 399 ~l~~~~~--~--~tvi~itH~l~~~~ 420 (467)
.+.++.+ + .++.+++|+-..+.
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHhcCcCceEEEECCCCCCHH
Confidence 5555422 3 36667777765544
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.83 E-value=2.1e-06 Score=85.57 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=46.3
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~ 287 (467)
.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 3788999999999999999999999999999999999888888887666553
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.83 E-value=1.6e-05 Score=82.07 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=44.1
Q ss_pred CCCCEEEeeCCCCCCCH-HHHHHHHHHHHHH-CCCceEEEEccCh-hHHhh-cCEEEE-EeCCEEEEecChh
Q 044927 374 KRNRILVLDEATASIDS-ATDAILQRIIREE-FPGSTVITVAHRV-PTITD-SDMFMV-LSYGELVEYDLPS 440 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~-~~~~~i~~~l~~~-~~~~tvi~itH~l-~~~~~-~d~i~v-l~~G~iv~~g~~~ 440 (467)
.+|++|++||+..-.+. .++..+...+... ..++.+|++||+. ..+.. .+++.- ++.|.+++.++|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 5677788888764 4578899999984 33221 222222 3456666666554
No 209
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.82 E-value=8.9e-06 Score=83.86 Aligned_cols=61 Identities=28% Similarity=0.494 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 309 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 309 (467)
-+++|+|+||+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 4799999999999999999999853 678999999987655554445555566656555443
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.81 E-value=2.6e-06 Score=94.38 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=29.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
+.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998753
No 211
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.78 E-value=0.00011 Score=68.97 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPENG 277 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G 277 (467)
+++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997766555
No 212
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.72 E-value=8.2e-06 Score=74.31 Aligned_cols=57 Identities=26% Similarity=0.313 Sum_probs=38.3
Q ss_pred EEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC----C----CCCccEEEEcCEe
Q 044927 227 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL----V----EPENGRILIDGLD 285 (467)
Q Consensus 227 s~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl----~----~p~~G~i~i~g~~ 285 (467)
+++|++-. .+++++|++.+++ +++++|++|+|||||++.+.+- + .++.+.+.++|..
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 45666543 4899999998887 5789999999999999999872 2 2344666666643
No 213
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.71 E-value=1.2e-05 Score=71.36 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 283 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g 283 (467)
.|++++|+|||||||||+++.|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55654
No 214
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.71 E-value=9.1e-06 Score=76.27 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=32.4
Q ss_pred ecceeEEEe---CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 044927 238 LKGITCTFK---EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 282 (467)
Q Consensus 238 L~~isl~i~---~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~ 282 (467)
|.+.|+++. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 666677666 8999999999999999999999999887 6666543
No 215
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.70 E-value=1.4e-05 Score=79.82 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPE 275 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~ 275 (467)
.++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
No 216
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.70 E-value=8.3e-06 Score=81.52 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=36.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~ 287 (467)
+++.+++|+|++|||||||++.|+|.+.|.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 457899999999999999999999999888899988776654
No 217
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.66 E-value=4e-05 Score=71.88 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=69.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhcCc-CCCC
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDP-LGMY 322 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~-~~~~ 322 (467)
+.+|+.+.++|||||||||++.+++.......|. ...++++.+.|.... .++.+|+.. .+..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3578999999999999999888764321111110 124567777775432 245555521 1000
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCccc----ccccCCCC---CCChhHHHHHHHHHHhcCCCCEEEeeCCCC-CCCHHHHH
Q 044927 323 SDNEIWEAMEKCQLKATISRLPMLLD----SSVSDEGE---NWSVGQRQLFCLGRVLLKRNRILVLDEATA-SIDSATDA 394 (467)
Q Consensus 323 ~~~~~~~~~~~~~l~~~i~~l~~g~~----t~v~~~g~---~LSgGq~Qrl~iARal~~~p~iliLDEpts-~LD~~~~~ 394 (467)
.+ ...|+. ........ --+.|.-.+.. +..+.+-+++|+||+-. ++|.....
T Consensus 137 -----------~~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 -----------PG-------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp -----------TT-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred -----------cC-------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 00 000111 01000000 12456555543 44689999999999976 57766554
Q ss_pred HHHHHHHHHCCC-ceEEEE
Q 044927 395 ILQRIIREEFPG-STVITV 412 (467)
Q Consensus 395 ~i~~~l~~~~~~-~tvi~i 412 (467)
...+.+....++ ++++++
T Consensus 197 ~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp HHHHHHHHHCTTSEEEEEE
T ss_pred HHHHHHHhhCCCCeEEEEe
Confidence 344444444333 444444
No 218
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.63 E-value=1.4e-05 Score=75.25 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEE--------EcCEeCCCCC-HHHHhcccEEEcC------CCcccc
Q 044927 248 GTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDICSMG-LKDLRTKLSIIPQ------EPTLFR 309 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~---gl~~p~~G~i~--------i~g~~i~~~~-~~~~r~~i~~v~Q------~~~lf~ 309 (467)
.-+++|.||+||||||+.+.|+ |+...+.|.++ -.|.++.+.. ..++...+.+.++ ..+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 66556667663 3466555432 3345556666653 333444
Q ss_pred ccHHHhc
Q 044927 310 GSVRTNL 316 (467)
Q Consensus 310 ~tv~enl 316 (467)
..|.++|
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 4555554
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.60 E-value=9.8e-06 Score=74.72 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=37.2
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEEcCE
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGL 284 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G--~i~i~g~ 284 (467)
+.+++|.++.|+|++||||||+.+.|.+.+.|..| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 45678999999999999999999999999988888 8888753
No 220
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.58 E-value=0.0002 Score=70.35 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=29.6
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
.|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5777765689999999999999999999888774
No 221
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.57 E-value=3.8e-05 Score=66.99 Aligned_cols=30 Identities=37% Similarity=0.687 Sum_probs=24.8
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALF 269 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 269 (467)
++..+++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666655 88999999999999999987
No 222
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.55 E-value=4.9e-05 Score=68.52 Aligned_cols=47 Identities=28% Similarity=0.426 Sum_probs=27.2
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc----CCCC----CccEEEEcCE
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LVEP----ENGRILIDGL 284 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g----l~~p----~~G~i~i~g~ 284 (467)
+++++|++.++. +++++|++|+|||||++.+.+ .+.| +.+.+.++|.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 688999988877 789999999999999999997 2333 3455556654
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.55 E-value=8.4e-05 Score=72.22 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i 279 (467)
...+.++||+|+||||+++.+++...+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766643
No 224
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.54 E-value=5.6e-05 Score=67.04 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++|.+++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.54 E-value=0.00041 Score=69.36 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=28.3
Q ss_pred eecceeEE---EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 237 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 237 ~L~~isl~---i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.|+.+ +. +++|+.+.|.||+|+|||||...++.-.
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45554 33 8899999999999999999998777543
No 226
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=1.5e-05 Score=78.86 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=34.2
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
+++++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6788998888898888876656667778876654
No 227
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.50 E-value=9.2e-05 Score=72.74 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
++..+.|.||+|+|||||++.+++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3567899999999999999999986643
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.49 E-value=1.3e-05 Score=73.37 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
...+|..++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.47 E-value=8.2e-05 Score=67.68 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999976543
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.45 E-value=1.8e-05 Score=77.32 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=42.5
Q ss_pred cc-eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 044927 239 KG-ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 288 (467)
Q Consensus 239 ~~-isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~ 288 (467)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34 677766 99999999999999999999999999888999988777654
No 231
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.39 E-value=0.00029 Score=68.63 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=27.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999865
No 232
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.36 E-value=0.00038 Score=66.72 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+.++..+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998764
No 233
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.31 E-value=1.3e-07 Score=90.87 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=64.8
Q ss_pred hCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE--EEeeCCCCCCCHHH---------HHHHHHHHHHHCCCceEE
Q 044927 342 RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI--LVLDEATASIDSAT---------DAILQRIIREEFPGSTVI 410 (467)
Q Consensus 342 ~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i--liLDEpts~LD~~~---------~~~i~~~l~~~~~~~tvi 410 (467)
.++.++++.+++++..+|+| ||++++|+++.+|++ +|+||+|+++|... +...++.++...+|+|.+
T Consensus 157 ~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~ 234 (261)
T 2eyu_A 157 VLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITL 234 (261)
T ss_dssp HHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCH
T ss_pred HHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCH
Confidence 45678999999999999999 999999999999999 99999999999863 345777787778899999
Q ss_pred EEccChh
Q 044927 411 TVAHRVP 417 (467)
Q Consensus 411 ~itH~l~ 417 (467)
.++||++
T Consensus 235 ~~a~r~~ 241 (261)
T 2eyu_A 235 EDAMEAS 241 (261)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999875
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.31 E-value=9.6e-05 Score=66.48 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.6
Q ss_pred ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 235
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.29 E-value=7.6e-05 Score=69.17 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
++..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987554
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.27 E-value=7.9e-05 Score=66.94 Aligned_cols=39 Identities=38% Similarity=0.612 Sum_probs=32.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-EEcC
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDG 283 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-~i~g 283 (467)
.++|..+.|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45789999999999999999999999888776766 3443
No 237
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.25 E-value=0.00091 Score=57.54 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccC
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR 415 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 415 (467)
+..+|++||.- .|++..+..+.+.+.....+..+|.+|++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 45689999984 68888888888888554445566666664
No 238
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.24 E-value=0.00027 Score=61.91 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
-+++++|++|+|||||++.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3689999999999999999998654
No 239
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.23 E-value=0.00014 Score=73.49 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=34.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcC-----------CCCCccEEEEcCE
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRL-----------VEPENGRILIDGL 284 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl-----------~~p~~G~i~i~g~ 284 (467)
.+..|.+++|||++|+|||||++.|+|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567889999999999999999999998 6788898887663
No 240
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.22 E-value=0.0011 Score=68.27 Aligned_cols=173 Identities=16% Similarity=0.255 Sum_probs=93.4
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEE-EcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RIL-IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 314 (467)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+. +.. +.+..++..++- .+...+-. +
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~--~~~~~i~~----~ 258 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMM--CSEARIDM----N 258 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHH--HHHTTCCT----T
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHH--HHHcCCCH----H
Confidence 46666656899999999999999999999888765543223 333 332 344444443321 00000000 0
Q ss_pred hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCCCH--
Q 044927 315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASIDS-- 390 (467)
Q Consensus 315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~LD~-- 390 (467)
.+. .+..++++..+..+.+ +.+...|-- +.+ ...+|..+ ..+.+|.+. .+|+++++|..+.-.+.
T Consensus 259 ~l~-~g~l~~~~~~~~~~a~---~~l~~~~l~----i~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~~~ 327 (444)
T 2q6t_A 259 RVR-LGQLTDRDFSRLVDVA---SRLSEAPIY----IDD-TPDLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGPGS 327 (444)
T ss_dssp TCC-GGGCCHHHHHHHHHHH---HHHHTSCEE----EEC-CTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC--
T ss_pred HHh-CCCCCHHHHHHHHHHH---HHHhcCCEE----EEC-CCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCCcC
Confidence 111 0123444443332221 122222211 111 13456554 355666665 57999999999865432
Q ss_pred ----HH-H---HHHHHHHHHHC--CCceEEEEccC-------------hh------HHh-hcCEEEEEeC
Q 044927 391 ----AT-D---AILQRIIREEF--PGSTVITVAHR-------------VP------TIT-DSDMFMVLSY 430 (467)
Q Consensus 391 ----~~-~---~~i~~~l~~~~--~~~tvi~itH~-------------l~------~~~-~~d~i~vl~~ 430 (467)
.+ . ..+.+.|+.+. .+++||+++|- ++ .++ .||.|+.|..
T Consensus 328 ~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 328 GKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 11 1 24445555533 27899999981 11 233 4899999953
No 241
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.22 E-value=2.5e-05 Score=78.35 Aligned_cols=58 Identities=31% Similarity=0.335 Sum_probs=36.2
Q ss_pred cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 283 (467)
Q Consensus 218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g 283 (467)
.+.+.++|++..|+. +.++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 346888999888853 34789999876 99999999999999999987666555544333
No 242
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.00019 Score=63.94 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+++++|++|+|||||++.+++-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999984
No 243
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.17 E-value=0.00041 Score=71.67 Aligned_cols=58 Identities=7% Similarity=0.131 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHhcCCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh
Q 044927 360 VGQRQLFCLGRVLLKRNRILVLDEATA-SIDSATDAILQRIIREEFPGSTVITVAHRVPTIT 420 (467)
Q Consensus 360 gGq~Qrl~iARal~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 420 (467)
+.|.+....+...+++++++|+..... ++.... ..+.+.+++ .++.+|++.+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccchh
Confidence 347777888888888999888665443 454443 455555544 4788899988877543
No 244
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.16 E-value=0.00012 Score=67.27 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 419 (467)
.+|.++++||+-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999866 78888778887776655567888888876643
No 245
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.15 E-value=0.00022 Score=65.37 Aligned_cols=30 Identities=37% Similarity=0.687 Sum_probs=24.5
Q ss_pred cceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927 239 KGITCTFKEGTRVGVVGRTGSGKTTLISALF 269 (467)
Q Consensus 239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 269 (467)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666664 89999999999999999885
No 246
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.00023 Score=69.88 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988774
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.07 E-value=0.00028 Score=64.18 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++|+|++||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 248
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.05 E-value=8.1e-06 Score=82.04 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=22.8
Q ss_pred CCCCCCChhHHHHHHHHHHh---cC--CCCEEEeeCCC
Q 044927 353 DEGENWSVGQRQLFCLGRVL---LK--RNRILVLDEAT 385 (467)
Q Consensus 353 ~~g~~LSgGq~Qrl~iARal---~~--~p~iliLDEpt 385 (467)
++|.++|+||+||.+++|+| ++ +++++++|||+
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 56778999999999999999 77 89999999997
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.05 E-value=0.0003 Score=62.79 Aligned_cols=26 Identities=42% Similarity=0.730 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPE 275 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~ 275 (467)
+++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00012 Score=66.63 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 284 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~ 284 (467)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 4689999999999999999998865 45556553
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.04 E-value=0.0002 Score=64.16 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEe
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLD 285 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~ 285 (467)
-..++|+|+||||||||++.|++.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999876543 3777776644
No 252
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.02 E-value=0.00028 Score=71.05 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEE
Q 044927 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV 427 (467)
Q Consensus 365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v 427 (467)
+.+|+++|..+|+++++|||+ |+++.. ..++....|.+++.++|..+....+||++.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence 569999999999999999999 776533 344445568899999998775555666543
No 253
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.98 E-value=0.00018 Score=68.21 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 286 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i 286 (467)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.++|-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998765 35677777433
No 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=9.2e-05 Score=70.14 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=28.9
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 285 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~ 285 (467)
++++++..++| +.|+||+|+||||+++++++.+... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 44444445554 8999999999999999999876422 35555543
No 255
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.93 E-value=0.00036 Score=70.47 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=44.1
Q ss_pred CCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHCC-CceEEEEccChhHH-------------hhcCEEEEEeCC
Q 044927 374 KRNRILVLDEATASID---SATDAILQRIIREEFP-GSTVITVAHRVPTI-------------TDSDMFMVLSYG 431 (467)
Q Consensus 374 ~~p~iliLDEpts~LD---~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~-------------~~~d~i~vl~~G 431 (467)
..|.++++||+-.-++ +.....+.+.+++.++ +..++++||+++.+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3588999999999885 5667778888877544 88999999998754 236667776653
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.86 E-value=0.0047 Score=63.23 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i 281 (467)
++.+++++|++|+||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45799999999999999999999877654445544
No 257
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.85 E-value=0.00047 Score=61.53 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.83 E-value=0.00017 Score=71.67 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=32.8
Q ss_pred eecceeEEEeCCcE--EEEEcCCCCcHHHHHHHHhcCC
Q 044927 237 VLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 237 ~L~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 68888999999999 9999999999999999998754
No 259
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.76 E-value=0.0012 Score=58.95 Aligned_cols=35 Identities=40% Similarity=0.777 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-C----CCCCcc----EEEEcCE
Q 044927 250 RVGVVGRTGSGKTTLISALFR-L----VEPENG----RILIDGL 284 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g-l----~~p~~G----~i~i~g~ 284 (467)
+++|+|++|+|||||++.+.+ . +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 689999999999999976654 3 556656 5556654
No 260
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.74 E-value=0.0055 Score=57.51 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+..-+.|.||+|+||||+++.++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998743
No 261
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.74 E-value=0.0027 Score=62.99 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=29.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 283 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g 283 (467)
.+|..+.|.||+|+||||+++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45678999999999999999999987754334444544
No 262
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.73 E-value=0.011 Score=57.06 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+..+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888765
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.69 E-value=0.0009 Score=59.18 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
|..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997654
No 264
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.67 E-value=0.00083 Score=62.76 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=27.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhc---CCCCCccEE
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFR---LVEPENGRI 279 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~g---l~~p~~G~i 279 (467)
-++|.+++|+|++||||||+.+.|++ +..++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 46789999999999999999999986 333444544
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.65 E-value=0.0067 Score=60.71 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
-+++|+.+.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 378999999999999999999977764
No 266
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.64 E-value=0.00088 Score=60.49 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 283 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g 283 (467)
..+++|+|++||||||+.+.|+.. |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999985 6666664
No 267
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.003 Score=57.01 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=32.3
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927 374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
.++.++++||. ..+++.....+.+.+.+...+..+|+++++...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 36889999996 446777777788888775556677777777653
No 268
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.63 E-value=0.0048 Score=61.40 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998754
No 269
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.63 E-value=0.00099 Score=59.23 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
.-+++++|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999975
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.63 E-value=0.00094 Score=58.49 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 271
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.62 E-value=0.00087 Score=60.48 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
No 272
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.59 E-value=0.0015 Score=65.27 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc-----------CCCCCccEEEEcC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFR-----------LVEPENGRILIDG 283 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~g-----------l~~p~~G~i~i~g 283 (467)
|-+++|||.+|+|||||++.|++ -..|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3467788887765
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.58 E-value=0.00028 Score=64.53 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEPE 275 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p~ 275 (467)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887653
No 274
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.58 E-value=0.0012 Score=65.70 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
..+..+.|.||+|+||||+++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.56 E-value=0.0012 Score=58.94 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+|.++.|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.48 E-value=0.0013 Score=58.93 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.48 E-value=0.0013 Score=57.34 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 044927 250 RVGVVGRTGSGKTTLISAL 268 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l 268 (467)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 278
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.48 E-value=0.0014 Score=65.81 Aligned_cols=31 Identities=32% Similarity=0.665 Sum_probs=26.5
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALF 269 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 269 (467)
+++..+++.+| ...|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46677777774 88999999999999999886
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.47 E-value=0.0014 Score=58.32 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997644
No 280
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.47 E-value=0.0014 Score=63.40 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=28.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 283 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g 283 (467)
.+|..+.|+||+||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987543 35667765
No 281
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.44 E-value=0.0013 Score=64.27 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=35.2
Q ss_pred ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc----CCCCCccEEEEc
Q 044927 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LVEPENGRILID 282 (467)
Q Consensus 236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g----l~~p~~G~i~i~ 282 (467)
..+++..+.+ .|.-++|.|+||+||||+...+.+ +...+...|...
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~ 182 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREI 182 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEc
Confidence 3678887877 789999999999999999999887 444444444443
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.44 E-value=0.0016 Score=58.77 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+|..++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999876
No 283
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.43 E-value=0.004 Score=57.89 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccC-----------hhHHhhcCEEEEEe
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR-----------VPTITDSDMFMVLS 429 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------l~~~~~~d~i~vl~ 429 (467)
+|+++++||.-- ++.+.-..+ ..+.+ .+.++|++-|+ .+.+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432222 33333 38999999992 22345699998864
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.43 E-value=0.0014 Score=59.28 Aligned_cols=44 Identities=27% Similarity=0.614 Sum_probs=29.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC-------------CCCccEEEEcCEeCCCCCHHHHhc
Q 044927 251 VGVVGRTGSGKTTLISALFRLV-------------EPENGRILIDGLDICSMGLKDLRT 296 (467)
Q Consensus 251 ~~ivG~sGsGKSTll~~l~gl~-------------~p~~G~i~i~g~~i~~~~~~~~r~ 296 (467)
+.|+||||||||||++.|..-+ +|-.|++ ||++..-++.++..+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~ 60 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHH
Confidence 6899999999999999987443 3344554 666555445554433
No 285
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.38 E-value=0.0017 Score=59.61 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 283 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g 283 (467)
.+-+++|.|++||||||+.+.|..+ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999983 4445543
No 286
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.35 E-value=0.012 Score=57.71 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 287
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0037 Score=61.28 Aligned_cols=28 Identities=36% Similarity=0.287 Sum_probs=25.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 243 CTFKEGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 243 l~i~~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
-.+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999999999999999875
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.0016 Score=61.63 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
..++|+||+|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.30 E-value=0.0018 Score=57.53 Aligned_cols=27 Identities=30% Similarity=0.214 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998543
No 290
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.28 E-value=0.0072 Score=51.69 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
+.+.-+.|.||+|+|||++.+.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3456789999999999999999987643
No 291
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.28 E-value=0.017 Score=68.12 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=29.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i 279 (467)
+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999999887655444444
No 292
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.27 E-value=0.002 Score=57.71 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 293
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.019 Score=58.39 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=24.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.-++...+.++|++||||||+.+.|+.-+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998643
No 294
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.25 E-value=0.0022 Score=58.27 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+|.+++|.|+.||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.25 E-value=0.0023 Score=58.01 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
+|.+++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876553
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.19 E-value=0.0025 Score=58.01 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++|.+++|.|+.||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998643
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.19 E-value=0.0024 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 044927 249 TRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~g 270 (467)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.18 E-value=0.002 Score=56.93 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 299
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.14 E-value=0.0065 Score=53.01 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999874
No 300
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.13 E-value=0.0024 Score=60.91 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
+++++|++|||||||++.++|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 301
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.13 E-value=0.016 Score=59.59 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=27.5
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555443589999999999999999999877664
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.0028 Score=56.51 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999987543
No 303
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.10 E-value=0.0029 Score=56.98 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999764
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.10 E-value=0.0018 Score=57.60 Aligned_cols=26 Identities=35% Similarity=0.302 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
..++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999987654
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0051 Score=53.13 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 044927 250 RVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g 270 (467)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 306
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.08 E-value=0.0023 Score=56.72 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=18.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++..+.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999998543
No 307
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.04 E-value=0.011 Score=58.50 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
+++++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999964 47777777888888765456677888887653
No 308
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.03 E-value=0.0025 Score=57.21 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+++.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998754
No 309
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.03 E-value=0.0031 Score=54.42 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 310
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.01 E-value=0.0032 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
++.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987554
No 311
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.98 E-value=0.0033 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 312
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0034 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.-+++++|++|+|||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999864
No 313
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.92 E-value=0.0041 Score=57.12 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++|-.+.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998654
No 314
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.92 E-value=0.004 Score=54.13 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998753
No 315
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.92 E-value=0.0037 Score=58.87 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|+|++|+|||||++.|+|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999854
No 316
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.91 E-value=0.0042 Score=58.93 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 317
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.90 E-value=0.0038 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 318
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.90 E-value=0.0036 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.89 E-value=0.0039 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 320
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.88 E-value=0.0042 Score=53.74 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998654
No 321
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.85 E-value=0.0042 Score=55.60 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 322
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.84 E-value=0.0043 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 323
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.84 E-value=0.0045 Score=54.09 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 324
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.83 E-value=0.0041 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 325
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.82 E-value=0.0043 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 326
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.81 E-value=0.0041 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 327
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.80 E-value=0.0044 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 328
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.79 E-value=0.0042 Score=56.12 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 329
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.79 E-value=0.0044 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 330
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.79 E-value=0.0052 Score=55.51 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+-+++|+|+.||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998644
No 331
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.79 E-value=0.0045 Score=59.28 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
-+++++|++|||||||++.++|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999964
No 332
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.78 E-value=0.018 Score=63.10 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+.+.||+|+|||++.+.++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 333
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.78 E-value=0.0045 Score=56.51 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999996543
No 334
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.78 E-value=0.0044 Score=53.41 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.78 E-value=0.0045 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999988643
No 336
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.77 E-value=0.0043 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
--+++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999875
No 337
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.76 E-value=0.0045 Score=59.15 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++++|++|+|||||++.|++--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988653
No 338
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.76 E-value=0.0047 Score=53.91 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 339
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.74 E-value=0.0045 Score=54.87 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
-+++++|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.73 E-value=0.0046 Score=54.00 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.73 E-value=0.0051 Score=55.59 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998544
No 342
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0092 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 343
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.70 E-value=0.0044 Score=57.00 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 344
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.69 E-value=0.0045 Score=61.98 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++|||++|+|||||++.|+|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 345
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.67 E-value=0.0058 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.330 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+.++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999763
No 346
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.67 E-value=0.0052 Score=52.94 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 044927 250 RVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g 270 (467)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.66 E-value=0.0054 Score=56.06 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997544
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.65 E-value=0.0058 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 349
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.65 E-value=0.0052 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.64 E-value=0.0057 Score=54.36 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997643
No 351
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.63 E-value=0.0043 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999874
No 352
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.63 E-value=0.005 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+++|.|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 353
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.63 E-value=0.0058 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.62 E-value=0.0048 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.62 E-value=0.0056 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 356
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.61 E-value=0.0056 Score=54.42 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999975
No 357
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.60 E-value=0.006 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
+++++|++|+|||||++.+.|-..+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
No 358
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.60 E-value=0.0056 Score=54.49 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 359
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.58 E-value=0.0066 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.57 E-value=0.0092 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 361
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.57 E-value=0.006 Score=52.44 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 044927 250 RVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g 270 (467)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 362
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.57 E-value=0.006 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 044927 248 GTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999975
No 363
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.56 E-value=0.0059 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 364
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.53 E-value=0.0059 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 365
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.52 E-value=0.0067 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+++|+|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999865
No 366
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.50 E-value=0.0039 Score=60.31 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++-+++|.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998744
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.50 E-value=0.0071 Score=56.73 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++-+++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999997544
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.48 E-value=0.0073 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
++..+.|+|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 369
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0067 Score=53.05 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 370
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.47 E-value=0.0067 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 371
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.46 E-value=0.0068 Score=52.76 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 372
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.44 E-value=0.007 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6899999999999999999853
No 373
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.44 E-value=0.0071 Score=52.91 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 374
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.43 E-value=0.012 Score=51.45 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 044927 250 RVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g 270 (467)
+++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 375
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.42 E-value=0.0072 Score=58.75 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++|+|++|+|||||++.++|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.42 E-value=0.0072 Score=56.87 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997743
No 377
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.42 E-value=0.0072 Score=56.96 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
-+++|+|++|+|||||++.|+|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999743
No 378
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.38 E-value=0.0083 Score=52.94 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999864
No 379
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.38 E-value=0.0093 Score=58.79 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567899999999999999999998763
No 380
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.37 E-value=0.0072 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 381
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.32 E-value=0.008 Score=53.33 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.0078 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 383
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.31 E-value=0.0081 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999853
No 384
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.30 E-value=0.0082 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 385
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.29 E-value=0.0082 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
.++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 386
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.022 Score=54.95 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
+++++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 48899999964 35666666777777765556777888877653
No 387
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.27 E-value=0.0091 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 388
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.27 E-value=0.0083 Score=54.56 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999754
No 389
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.27 E-value=0.0082 Score=53.46 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 044927 249 TRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~g 270 (467)
=.++++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3789999999999999999986
No 390
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.26 E-value=0.0082 Score=53.33 Aligned_cols=23 Identities=39% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 391
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.25 E-value=0.0051 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.-+++++|++|+|||||++.++|-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 392
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.25 E-value=0.0086 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 393
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.25 E-value=0.0088 Score=58.26 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+++|+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999985
No 394
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.24 E-value=0.00069 Score=74.98 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=36.7
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287 (467)
Q Consensus 241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~ 287 (467)
.++.+.+++.+.++||+|+|||||++++++... .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 467788999999999999999999999999874 345666665553
No 395
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.24 E-value=0.044 Score=53.20 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=32.5
Q ss_pred CCCEEEeeCCCCCCC-HHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927 375 RNRILVLDEATASID-SATDAILQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 375 ~p~iliLDEpts~LD-~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
+++++++||.-. +. ......+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999843 44 66667777777776566788888888764
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.24 E-value=0.0091 Score=54.79 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+|-.+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 397
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.24 E-value=0.0088 Score=57.19 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.23 E-value=0.009 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 399
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.22 E-value=0.0096 Score=54.83 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+++++|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 400
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.22 E-value=0.0097 Score=53.37 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 401
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.22 E-value=0.014 Score=53.09 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.6
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
.++..-+.+ .|..+.|+||+|||||||...|+.-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 466665554 5788999999999999999998754
No 402
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.21 E-value=0.009 Score=53.54 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 403
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.21 E-value=0.0092 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 044927 250 RVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g 270 (467)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999874
No 404
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.21 E-value=0.0086 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
=+++++|++|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 478999999999999999998743
No 405
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.19 E-value=0.0098 Score=56.38 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.19 E-value=0.0092 Score=57.32 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 044927 248 GTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
..+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.0091 Score=53.13 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999999864
No 408
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.16 E-value=0.011 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+++++|++|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 409
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.15 E-value=0.015 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 410
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.15 E-value=0.01 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 411
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.14 E-value=0.011 Score=56.27 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCccE
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVEPENGR 278 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~ 278 (467)
-+++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999876554443
No 412
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.13 E-value=0.0098 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.12 E-value=0.011 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++.|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997644
No 414
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.011 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 044927 248 GTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999985
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.11 E-value=0.01 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998644
No 416
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.10 E-value=0.085 Score=63.12 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
+++|+.+.|.||+|+|||||+..++.-..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999888775443
No 417
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.07 E-value=0.01 Score=57.48 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 418
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.06 E-value=0.0096 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 419
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.06 E-value=0.012 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
+++++|++|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7899999999999999999885443
No 420
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.04 E-value=0.027 Score=62.60 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVEPE 275 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~p~ 275 (467)
..+.|.||+|+|||++.+.|.......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478999999999999999999877543
No 421
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.04 E-value=0.012 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
-=+++++|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999853
No 422
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.04 E-value=0.01 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.011 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.04 E-value=0.011 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.03 E-value=0.011 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 426
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.03 E-value=0.011 Score=53.03 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.=+++++|+.|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3478999999999999999998643
No 427
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.02 E-value=0.011 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 428
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.011 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
-+++++|++|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 429
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.01 E-value=0.011 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999854
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.00 E-value=0.013 Score=57.26 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 431
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.98 E-value=0.014 Score=51.21 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
..+..+.|.||+|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998765
No 432
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.98 E-value=0.012 Score=55.80 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.++|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999843
No 433
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.97 E-value=0.012 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 434
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.96 E-value=0.012 Score=53.51 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 044927 250 RVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g 270 (467)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 435
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.96 E-value=0.012 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
..++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 436
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.95 E-value=0.011 Score=53.83 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
-.++++|++|+|||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 437
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.94 E-value=0.011 Score=55.07 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
.+|..+.+.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987654
No 438
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.93 E-value=0.013 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 439
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.92 E-value=0.012 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=18.2
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHhc
Q 044927 247 EGTR-VGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 247 ~Ge~-~~ivG~sGsGKSTll~~l~g 270 (467)
+|+. +.+.|+.|+||||++-.++.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHH
Confidence 4554 77899999999999555543
No 440
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.92 E-value=0.014 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 441
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.92 E-value=0.0092 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 442
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.91 E-value=0.013 Score=52.15 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 044927 250 RVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g 270 (467)
+++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999998875
No 443
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.91 E-value=0.014 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
=+++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 444
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.90 E-value=0.014 Score=53.68 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
.+|..+.+.|+.||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999876653
No 445
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.90 E-value=0.013 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
+.=+++++|++|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999975
No 446
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.85 E-value=0.012 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++++|++|+|||||++.|+|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 78999999999999999999864
No 447
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.84 E-value=0.0092 Score=52.43 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=9.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 448
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.79 E-value=0.013 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 449
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.79 E-value=0.013 Score=60.27 Aligned_cols=42 Identities=33% Similarity=0.642 Sum_probs=32.6
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i 279 (467)
+++.+ +.+-+|++++|+|++|+|||||++.|++-.....|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 45555 6778999999999999999999999987554333333
No 450
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.78 E-value=0.018 Score=52.08 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
-+++++|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998643
No 451
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.76 E-value=0.016 Score=54.30 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
+|..+.+.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 452
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.76 E-value=0.096 Score=61.83 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=27.6
Q ss_pred eecceeEE---EeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 237 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 237 ~L~~isl~---i~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
-|+.+ +. +++|+.+.|.||+|+|||||..-++.-
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45554 33 899999999999999999998777643
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.74 E-value=0.011 Score=54.01 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+-+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 454
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.70 E-value=0.017 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.017 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 456
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.015 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 457
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.65 E-value=0.0086 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
No 458
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.64 E-value=0.014 Score=53.98 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 244 TFKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+.++..++.|+||.||||+|..+.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998654
No 459
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.64 E-value=0.013 Score=51.94 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
+.=+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344799999999999999999964
No 460
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.64 E-value=0.052 Score=56.12 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=55.3
Q ss_pred ccccCCCCCCChhHHHHHHHHH--HhcC---------------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEE
Q 044927 349 SSVSDEGENWSVGQRQLFCLGR--VLLK---------------RNRILVLDEATASIDSATDAILQRIIREEFPGSTVIT 411 (467)
Q Consensus 349 t~v~~~g~~LSgGq~Qrl~iAR--al~~---------------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 411 (467)
+........+||||+|-.-+|. |+++ .=.+++|||+ +-+|.+..+..++.++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 3444455778999999543333 2221 1258999999 999999999999999976 666778
Q ss_pred EccChhHHhhcCEEEEEe
Q 044927 412 VAHRVPTITDSDMFMVLS 429 (467)
Q Consensus 412 itH~l~~~~~~d~i~vl~ 429 (467)
+|=. .....+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 8776 3334588888775
No 461
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.63 E-value=0.016 Score=55.71 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 044927 249 TRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~g 270 (467)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 462
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.60 E-value=0.019 Score=53.06 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
++|..+.+-|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999987764
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.58 E-value=0.019 Score=53.24 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
.+|..+.+.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.57 E-value=0.018 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
+|..++|.|+.||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999987663
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.56 E-value=0.017 Score=56.55 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.48 E-value=0.02 Score=55.65 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
...+.|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998665
No 467
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.46 E-value=0.22 Score=51.69 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=27.1
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
|+.+---+++|+.+.|.|++|+|||||+.-++--
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4444335899999999999999999998776643
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.46 E-value=0.017 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
-+++|+|++|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988653
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.45 E-value=0.014 Score=55.15 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
+++..++|.|+.||||||+.+.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
No 470
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.43 E-value=0.018 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999764
No 471
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.39 E-value=0.017 Score=50.52 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRLVEP 274 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p 274 (467)
..+..+.|.||+|+||||+++.++.....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999876543
No 472
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.39 E-value=0.022 Score=55.39 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987753
No 473
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.39 E-value=0.019 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 044927 248 GTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34789999999999999988874
No 474
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.39 E-value=0.006 Score=62.45 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 286 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i 286 (467)
.+++++|++|+||||++..|++.+.....+|.+-..|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58999999999999999999998765445566544443
No 475
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.37 E-value=0.032 Score=49.52 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.6
Q ss_pred eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 270 (467)
.++..-+. -.|.-+.|.|+||+||||+...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45554444 4588999999999999999987764
No 476
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.33 E-value=0.0097 Score=53.30 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=4.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988764
No 477
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.021 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.20 E-value=0.0074 Score=57.06 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=24.6
Q ss_pred ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
+.+++...++| +.|.||+|+||||+++.+++.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33444444555 789999999999999999874
No 479
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.20 E-value=0.03 Score=51.75 Aligned_cols=25 Identities=48% Similarity=0.744 Sum_probs=22.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALF 269 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~ 269 (467)
+++|+.+.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999986543
No 480
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.18 E-value=0.023 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 044927 249 TRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~gl 271 (467)
=+++++|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999999864
No 481
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.14 E-value=0.03 Score=53.82 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVEPE 275 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~ 275 (467)
+-.++++|.+|+|||||+|.|.|-....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CceEEEEecCCCchHHHHHHHhcCceee
Confidence 3478999999999999999999875433
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.04 E-value=0.026 Score=56.92 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
...++|+||||||||||...|+.-+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998654
No 483
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.00 E-value=0.025 Score=51.06 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 044927 250 RVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~g 270 (467)
+++++|++|+|||||++.+.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 484
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.77 E-value=0.026 Score=56.37 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
++..++++|++|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999986
No 485
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.76 E-value=0.033 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++.|+||.||||+|..+.|+.-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998655
No 486
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.74 E-value=0.25 Score=59.23 Aligned_cols=34 Identities=32% Similarity=0.322 Sum_probs=30.2
Q ss_pred ceeccee--EEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927 236 LVLKGIT--CTFKEGTRVGVVGRTGSGKTTLISALF 269 (467)
Q Consensus 236 ~~L~~is--l~i~~Ge~~~ivG~sGsGKSTll~~l~ 269 (467)
+.|+++. .-+++|+.+.+.||+|||||||...+.
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4677876 579999999999999999999999877
No 487
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.58 E-value=0.039 Score=50.35 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
|.+|+|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 488
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.56 E-value=0.01 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++++|++|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988643
No 489
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.51 E-value=0.028 Score=56.22 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 247 EGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 247 ~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
++..++++|++|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57889999999999999999999863
No 490
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.47 E-value=0.023 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHH-Hhc
Q 044927 250 RVGVVGRTGSGKTTLISA-LFR 270 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~-l~g 270 (467)
+++++|++|+|||||++. +.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999998 444
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.46 E-value=0.034 Score=56.81 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 044927 250 RVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl 271 (467)
+++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 492
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.46 E-value=0.036 Score=55.96 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++|+|++|+|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 493
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.43 E-value=0.31 Score=47.65 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=30.7
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT 418 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 418 (467)
+++++|+||+= .|.......+.+.+++-..+..+|++|++++-
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 57999999974 35666666777777654445677888888753
No 494
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.42 E-value=0.028 Score=55.70 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
.++++|+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999854
No 495
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.32 E-value=0.032 Score=49.92 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=33.0
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChh-----------HHhhcCEEEEEeC
Q 044927 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVP-----------TITDSDMFMVLSY 430 (467)
Q Consensus 375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~-----------~~~~~d~i~vl~~ 430 (467)
+++++++||.-- +|+.....+.... + .+..+++..++.+ .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~-~--~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLL-D--RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHH-H--TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHH-H--CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999854 6554333332222 2 3788888888443 3445999987754
No 496
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.44 E-value=0.015 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 044927 249 TRVGVVGRTGSGKTTLISALFR 270 (467)
Q Consensus 249 e~~~ivG~sGsGKSTll~~l~g 270 (467)
=+++++|++|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4789999999999999988764
No 497
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.15 E-value=0.033 Score=57.46 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927 246 KEGTRVGVVGRTGSGKTTLISALFRL 271 (467)
Q Consensus 246 ~~Ge~~~ivG~sGsGKSTll~~l~gl 271 (467)
+.|=+++|+|++|+|||||++.++|-
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34557999999999999999999874
No 498
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.05 E-value=0.076 Score=54.23 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC----C--------CCccEEEEcCEe
Q 044927 250 RVGVVGRTGSGKTTLISALFRLV----E--------PENGRILIDGLD 285 (467)
Q Consensus 250 ~~~ivG~sGsGKSTll~~l~gl~----~--------p~~G~i~i~g~~ 285 (467)
+++|||++++|||||++.+.|-- . ...|.+.++|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~ 50 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 50 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence 68999999999999999999753 2 224566677763
No 499
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.03 E-value=0.037 Score=54.93 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927 248 GTRVGVVGRTGSGKTTLISALFRLVE 273 (467)
Q Consensus 248 Ge~~~ivG~sGsGKSTll~~l~gl~~ 273 (467)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987653
No 500
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.94 E-value=0.033 Score=50.94 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927 245 FKEGTRVGVVGRTGSGKTTLISALFRLV 272 (467)
Q Consensus 245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~ 272 (467)
+++...+.+.||.|+||||+...|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 5666679999999999999999998875
Done!